forked from D-Net/dnet-hadoop
Merge pull request 'stats DB for monitor' (#99) from antonis.lempesis/dnet-hadoop:master into master
Looks good to me, just a note on the parsing of the citations: since the last version, IIS produces citations as proper relationships among results. This is what we got already in the BETA graph ``` count r.reltype r.subreltype r.relclass 62.129.254 resultResult citation cites 62.043.309 resultResult citation isCitedBy ``` Thus, I suggest to move away from the current property based implementation for the extraction of the citation links and start relying on the relationships instead.
This commit is contained in:
commit
e8789b0cdb
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@ -0,0 +1,18 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export SOURCE=$1
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export SHADOW=$2
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echo "Updating shadow database"
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impala-shell -d ${SOURCE} -q "invalidate metadata"
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impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${SOURCE}.\1;/" | impala-shell -c -f -
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impala-shell -q "create database if not exists ${SHADOW}"
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impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -c -f -
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impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
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echo "Shadow db ready!"
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@ -1,18 +0,0 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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if ! [ -L $link_folder ]
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then
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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echo "Getting file from " $3
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hdfs dfs -copyToLocal $3
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echo "Running impala shell make the new database visible"
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impala-shell -q "INVALIDATE METADATA;"
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echo "Running impala shell to compute new table stats"
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impala-shell -d $1 -f $2
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echo "Impala shell finished"
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rm $2
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@ -0,0 +1,25 @@
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export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
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export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
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||||
if ! [ -L $link_folder ]
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||||
then
|
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rm -Rf "$link_folder"
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ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
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fi
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export SOURCE=$1
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export TARGET=$2
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export SHADOW=$3
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export SCRIPT_PATH=$4
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echo "Getting file from " $4
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hdfs dfs -copyToLocal $4
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echo "Creating monitor database"
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cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 | impala-shell -f -
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echo "Impala shell finished"
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echo "Updating shadow monitor database"
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impala-shell -q "create database if not exists ${SHADOW}"
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impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
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impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f -
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echo "Shadow db ready!"
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@ -3,14 +3,37 @@
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-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
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CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
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CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
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CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
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CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
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CREATE OR REPLACE VIEW ${stats_db_name}.context AS SELECT * FROM ${external_stats_db_name}.context;
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CREATE OR REPLACE VIEW ${stats_db_name}.category AS SELECT * FROM ${external_stats_db_name}.category;
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CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_stats_db_name}.concept;
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CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS
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SELECT *
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FROM ${external_stats_db_name}.fundref;
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CREATE OR REPLACE VIEW ${stats_db_name}.country AS
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SELECT *
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FROM ${external_stats_db_name}.country;
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CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS
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SELECT *
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FROM ${external_stats_db_name}.countrygdp;
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CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS
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SELECT *
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FROM ${external_stats_db_name}.roarmap;
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CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS
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SELECT *
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FROM ${external_stats_db_name}.rndexpediture;
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||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.context AS
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||||
SELECT *
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||||
FROM ${external_stats_db_name}.context;
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||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.category AS
|
||||
SELECT *
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||||
FROM ${external_stats_db_name}.category;
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|
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CREATE OR REPLACE VIEW ${stats_db_name}.concept AS
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||||
SELECT *
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FROM ${external_stats_db_name}.concept;
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||||
|
||||
|
||||
------------------------------------------------------------------------------------------------
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@ -18,4 +41,8 @@ CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_sta
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-- Creation date of the database
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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create table ${stats_db_name}.creation_date as select date_format(current_date(), 'dd-MM-yyyy') as date;
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create table ${stats_db_name}.creation_date as
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select date_format(current_date(), 'dd-MM-yyyy') as date;
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--
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-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS;
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||||
-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS FOR COLUMNS;
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||||
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@ -5,40 +5,114 @@
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----------------------------------------------------------------
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--Datasource temporary table updates
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UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
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UPDATE ${stats_db_name}.datasource_tmp
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SET harvested='true'
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WHERE datasource_tmp.id IN (SELECT DISTINCT d.id
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FROM ${stats_db_name}.datasource_tmp d,
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||||
${stats_db_name}.result_datasources rd
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||||
WHERE d.id = rd.datasource);
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||||
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||||
-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
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||||
UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
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UPDATE ${stats_db_name}.project_tmp
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SET haspubs='yes'
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WHERE project_tmp.id IN (SELECT pr.id
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FROM ${stats_db_name}.project_results pr,
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${stats_db_name}.result r
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WHERE pr.result = r.id
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AND r.type = 'publication');
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DROP TABLE IF EXISTS ${stats_db_name}.project;
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CREATE TABLE ${stats_db_name}.project stored as parquet as
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SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
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CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
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CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
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||||
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
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p.callidentifier, p.code
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||||
SELECT p.id,
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p.acronym,
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p.title,
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p.funder,
|
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p.funding_lvl0,
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||||
p.funding_lvl1,
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||||
p.funding_lvl2,
|
||||
p.ec39,
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||||
p.type,
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||||
p.startdate,
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p.enddate,
|
||||
p.start_year,
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p.end_year,
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||||
p.duration,
|
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CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
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CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
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p.callidentifier,
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p.code
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||||
FROM ${stats_db_name}.project_tmp p
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LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
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FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
|
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WHERE r.type='publication'
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GROUP BY pr.id) AS prr1 on prr1.id = p.id
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LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
|
||||
FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
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WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
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GROUP BY pp.id) AS prr2
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ON prr2.id = p.id;
|
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LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
|
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FROM ${stats_db_name}.project_results pr
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INNER JOIN ${stats_db_name}.result r ON pr.result = r.id
|
||||
WHERE r.type = 'publication'
|
||||
GROUP BY pr.id) AS prr1 on prr1.id = p.id
|
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LEFT JOIN (SELECT pp.id,
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max(datediff(to_date(r.date), to_date(pp.enddate))) AS daysForlastPub,
|
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count(distinct r.id) AS dp
|
||||
FROM ${stats_db_name}.project_tmp pp,
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${stats_db_name}.project_results pr,
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${stats_db_name}.result r
|
||||
WHERE pp.id = pr.id
|
||||
AND pr.result = r.id
|
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AND r.type = 'publication'
|
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AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
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||||
GROUP BY pp.id) AS prr2
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||||
ON prr2.id = p.id;
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|
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-- Publication temporary table updates
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UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
|
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UPDATE ${stats_db_name}.publication_tmp
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||||
SET delayed = 'yes'
|
||||
WHERE publication_tmp.id IN (SELECT distinct r.id
|
||||
FROM stats_wf_db_obs.result r,
|
||||
${stats_db_name}.project_results pr,
|
||||
${stats_db_name}.project_tmp p
|
||||
WHERE r.id = pr.result
|
||||
AND pr.id = p.id
|
||||
AND to_date(r.date) - to_date(p.enddate) > 0);
|
||||
|
||||
-- Dataset temporary table updates
|
||||
UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
|
||||
UPDATE ${stats_db_name}.dataset_tmp
|
||||
SET delayed = 'yes'
|
||||
WHERE dataset_tmp.id IN (SELECT distinct r.id
|
||||
FROM stats_wf_db_obs.result r,
|
||||
${stats_db_name}.project_results pr,
|
||||
${stats_db_name}.project_tmp p
|
||||
WHERE r.id = pr.result
|
||||
AND pr.id = p.id
|
||||
AND to_date(r.date) - to_date(p.enddate) > 0);
|
||||
|
||||
-- Software temporary table updates
|
||||
UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
|
||||
UPDATE ${stats_db_name}.software_tmp
|
||||
SET delayed = 'yes'
|
||||
WHERE software_tmp.id IN (SELECT distinct r.id
|
||||
FROM ${stats_db_name}.result r,
|
||||
${stats_db_name}.project_results pr,
|
||||
${stats_db_name}.project_tmp p
|
||||
WHERE r.id = pr.result
|
||||
AND pr.id = p.id
|
||||
AND to_date(r.date) - to_date(p.enddate) > 0);
|
||||
|
||||
-- Oherresearchproduct temporary table updates
|
||||
UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
|
||||
UPDATE ${stats_db_name}.otherresearchproduct_tmp
|
||||
SET delayed = 'yes'
|
||||
WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
|
||||
FROM ${stats_db_name}.result r,
|
||||
${stats_db_name}.project_results pr,
|
||||
${stats_db_name}.project_tmp p
|
||||
WHERE r.id = pr.result
|
||||
AND pr.id = p.id
|
||||
AND to_date(r.date) - to_date(p.enddate) > 0);
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
|
||||
SELECT result_projects.id AS result,
|
||||
result_projects.project AS project_results,
|
||||
result.date as resultdate,
|
||||
project.enddate as projectenddate,
|
||||
result_projects.daysfromend AS daysfromend
|
||||
FROM ${stats_db_name}.result_projects,
|
||||
${stats_db_name}.result,
|
||||
${stats_db_name}.project
|
||||
WHERE result_projects.id = result.id
|
||||
AND result.type = 'publication'
|
||||
AND project.id = result_projects.project;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -1,21 +1,25 @@
|
|||
------------------------------------------------------------------------------------------------------
|
||||
-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
|
||||
------------------------------------------------------------------------------------------------------
|
||||
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.datasource_tmp;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource;
|
||||
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
|
||||
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_tmp;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.publication;
|
||||
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
|
||||
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_tmp;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.dataset;
|
||||
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
|
||||
CREATE TABLE ${stats_db_name}.software stored AS parquet AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_tmp;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software;
|
||||
CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||
|
||||
DROP TABLE ${stats_db_name}.project_tmp;
|
||||
DROP TABLE ${stats_db_name}.datasource_tmp;
|
||||
|
|
@ -29,10 +33,47 @@ DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
|
|||
---------------------------------------------
|
||||
|
||||
-- Result
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result AS
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.publication
|
||||
UNION ALL
|
||||
SELECT *, bestlicence as access_mode
|
||||
FROM ${stats_db_name}.software
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.dataset
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.otherresearchproduct;
|
||||
|
||||
|
||||
-------------------------------------------------------------------------------
|
||||
-- To see with Antonis if the following is needed and where it should be placed
|
||||
-------------------------------------------------------------------------------
|
||||
CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;
|
||||
CREATE TABLE ${stats_db_name}.numbers_country AS
|
||||
SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications
|
||||
FROM ${stats_db_name}.result r,
|
||||
${stats_db_name}.result_datasources rd,
|
||||
${stats_db_name}.datasource d,
|
||||
${stats_db_name}.datasource_organizations dor,
|
||||
${stats_db_name}.organization org
|
||||
WHERE r.id = rd.id
|
||||
AND rd.datasource = d.id
|
||||
AND d.id = dor.id
|
||||
AND dor.organization = org.id
|
||||
AND r.type = 'publication'
|
||||
AND r.bestlicence = 'Open Access'
|
||||
GROUP BY org.country;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -57,3 +57,12 @@ UNION ALL
|
|||
SELECT * FROM ${stats_db_name}.software_sources
|
||||
UNION ALL
|
||||
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -47,3 +47,16 @@ FROM (
|
|||
SELECT substr(d.id, 4) id
|
||||
from ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -34,3 +34,12 @@ union all
|
|||
select * from ${stats_db_name}.software_refereed
|
||||
union all
|
||||
select * from ${stats_db_name}.otherresearchproduct_refereed;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -78,3 +78,14 @@ join ${stats_db_name}.datasource d on d.id=rd.datasource
|
|||
join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
|
||||
join ${stats_db_name}.organization o on o.id=dor.organization
|
||||
where o.country is not null and o.country!='';
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -53,3 +53,6 @@ drop table if exists ${stats_db_name}.result;
|
|||
drop view if exists ${stats_db_name}.result;
|
||||
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
|
||||
drop table ${stats_db_name}.result_tmp;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -29,4 +29,11 @@ select rcount.pid, sum(case when rcount.type='publication' then rcount.count els
|
|||
from rcount
|
||||
group by rcount.pid;
|
||||
|
||||
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture
|
||||
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -1,207 +0,0 @@
|
|||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Shadow schema table exchange
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
|
||||
-- Dropping old views
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
|
||||
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
|
||||
|
||||
|
||||
-- Creating the shadow database, in case it doesn't exist
|
||||
CREATE database IF NOT EXISTS ${stats_db_shadow_name};
|
||||
|
||||
-- Creating new views
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
|
||||
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Impala table statistics - Needed to make the tables
|
||||
-- visible for impala
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
|
||||
INVALIDATE METADATA ${stats_db_name};
|
||||
|
|
@ -1,8 +0,0 @@
|
|||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Impala table statistics - Needed to make the tables
|
||||
-- visible for impala
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
|
||||
INVALIDATE METADATA ${stats_db_name};
|
||||
|
|
@ -5,40 +5,109 @@
|
|||
--------------------------------------------------------------
|
||||
|
||||
-- Publication temporary table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
|
||||
CREATE TABLE ${stats_db_name}.publication_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
)
|
||||
clustered by (id) into 100 buckets stored as orc tblproperties ('transactional' = 'true');
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||
|
||||
INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal ,
|
||||
p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
|
||||
p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
|
||||
case when size(p.description) > 0 then true else false end as abstract,
|
||||
'publication' as type
|
||||
INSERT INTO ${stats_db_name}.publication_tmp
|
||||
SELECT substr(p.id, 4) as id,
|
||||
p.title[0].value as title,
|
||||
p.publisher.value as publisher,
|
||||
p.journal.name as journal,
|
||||
p.dateofacceptance.value as date,
|
||||
date_format(p.dateofacceptance.value, 'yyyy') as year,
|
||||
p.bestaccessright.classname as bestlicence,
|
||||
p.embargoenddate.value as embargo_end_date,
|
||||
false as delayed,
|
||||
size(p.author) as authors,
|
||||
concat_ws('\u003B', p.source.value) as source,
|
||||
case when size(p.description) > 0 then true else false end as abstract,
|
||||
'publication' as type
|
||||
from ${openaire_db_name}.publication p
|
||||
where p.datainfo.deletedbyinference=false;
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_classifications AS
|
||||
SELECT substr(p.id, 4) as id, instancetype.classname as type
|
||||
from ${openaire_db_name}.publication p
|
||||
LATERAL VIEW explode(p.instance.instancetype) instances as instancetype
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_concepts AS
|
||||
SELECT substr(p.id, 4) as id, contexts.context.id as concept
|
||||
from ${openaire_db_name}.publication p
|
||||
LATERAL VIEW explode(p.context) contexts as context
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_datasources as
|
||||
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
|
||||
FROM (
|
||||
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
|
||||
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
|
||||
where p.datainfo.deletedbyinference=false ) p
|
||||
LEFT OUTER JOIN (
|
||||
SELECT substr(d.id, 4) id
|
||||
from ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference=false ) d on p.datasource = d.id;
|
||||
FROM (
|
||||
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
|
||||
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
|
||||
where p.datainfo.deletedbyinference = false) p
|
||||
LEFT OUTER JOIN (
|
||||
SELECT substr(d.id, 4) id
|
||||
from ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language FROM ${openaire_db_name}.publication p where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_languages AS
|
||||
select substr(p.id, 4) as id, p.language.classname as language
|
||||
FROM ${openaire_db_name}.publication p
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_oids AS
|
||||
SELECT substr(p.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.publication p
|
||||
LATERAL VIEW explode(p.originalid) oids AS ids
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_pids AS
|
||||
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid
|
||||
FROM ${openaire_db_name}.publication p
|
||||
LATERAL VIEW explode(p.pid) pids AS ppid
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_topics as
|
||||
select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic
|
||||
FROM ${openaire_db_name}.publication p
|
||||
LATERAL VIEW explode(p.subject) subjects AS subject
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
-- Publication_citations
|
||||
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.publication_citations AS
|
||||
SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
|
||||
FROM ${openaire_db_name}.publication p
|
||||
lateral view explode(p.extrainfo) citations AS citation
|
||||
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
|
||||
and p.datainfo.deletedbyinference = false;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -0,0 +1,121 @@
|
|||
drop database if exists TARGET cascade;
|
||||
create database if not exists TARGET;
|
||||
|
||||
create view if not exists TARGET.category as select * from SOURCE.category;
|
||||
create view if not exists TARGET.concept as select * from SOURCE.concept;
|
||||
create view if not exists TARGET.context as select * from SOURCE.context;
|
||||
create view if not exists TARGET.country as select * from SOURCE.country;
|
||||
create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
|
||||
create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
|
||||
create view if not exists TARGET.funder as select * from SOURCE.funder;
|
||||
create view if not exists TARGET.fundref as select * from SOURCE.fundref;
|
||||
create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
|
||||
--create view if not exists TARGET.roarmap as select * from SOURCE.roarmap;
|
||||
|
||||
create table TARGET.result as
|
||||
select distinct * from (
|
||||
select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
|
||||
union all
|
||||
select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) ) foo;
|
||||
compute stats TARGET.result;
|
||||
|
||||
create table TARGET.result_affiliated_country as select * from SOURCE.result_affiliated_country rac where exists (select 1 from TARGET.result r where r.id=rac.id);
|
||||
compute stats TARGET.result_affiliated_country;
|
||||
|
||||
create table TARGET.result_citations as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_citations;
|
||||
|
||||
create table TARGET.result_classifications as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_classifications;
|
||||
|
||||
create table TARGET.result_concepts as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_concepts;
|
||||
|
||||
create table TARGET.result_datasources as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_datasources;
|
||||
|
||||
create table TARGET.result_deposited_country as select * from SOURCE.result_deposited_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_deposited_country;
|
||||
|
||||
create table TARGET.result_fundercount as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_fundercount;
|
||||
|
||||
create table TARGET.result_gold as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_gold;
|
||||
|
||||
create table TARGET.result_greenoa as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_greenoa;
|
||||
|
||||
create table TARGET.result_languages as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_languages;
|
||||
|
||||
create table TARGET.result_licences as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_licences;
|
||||
|
||||
create table TARGET.result_oids as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_oids;
|
||||
|
||||
create table TARGET.result_organization as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_organization;
|
||||
|
||||
create table TARGET.result_peerreviewed as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_peerreviewed;
|
||||
|
||||
create table TARGET.result_pids as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_pids;
|
||||
|
||||
create table TARGET.result_projectcount as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_projectcount;
|
||||
|
||||
create table TARGET.result_projects as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_projects;
|
||||
|
||||
create table TARGET.result_refereed as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_refereed;
|
||||
|
||||
create table TARGET.result_sources as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_sources;
|
||||
|
||||
create table TARGET.result_topics as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
|
||||
compute stats TARGET.result_topics;
|
||||
|
||||
-- datasources
|
||||
create view if not exists TARGET.datasource as select * from SOURCE.datasource;
|
||||
create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
|
||||
create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
|
||||
create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
|
||||
|
||||
create table TARGET.datasource_results as select id as result, datasource as id from TARGET.result_datasources;
|
||||
compute stats TARGET.datasource_results;
|
||||
|
||||
-- organizations
|
||||
create view if not exists TARGET.organization as select * from SOURCE.organization;
|
||||
create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
|
||||
create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
|
||||
create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
|
||||
create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
|
||||
|
||||
-- projects
|
||||
create view if not exists TARGET.project as select * from SOURCE.project;
|
||||
create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
|
||||
create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
|
||||
create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
|
||||
|
||||
create table TARGET.project_results as select id as result, project as id from TARGET.result_projects;
|
||||
compute stats TARGET.project_results;
|
||||
|
||||
--denorm
|
||||
alter table TARGET.result rename to TARGET.res_tmp;
|
||||
|
||||
create table TARGET.result_denorm as
|
||||
select distinct r.*, rp.project, p.acronym as pacronym, p.title as ptitle, p.funder as pfunder, p.funding_lvl0 as pfunding_lvl0, rd.datasource, d.name as dname, d.type as dtype
|
||||
from TARGET.res_tmp r
|
||||
join TARGET.result_projects rp on rp.id=r.id
|
||||
join TARGET.result_datasources rd on rd.id=r.id
|
||||
join TARGET.project p on p.id=rp.project
|
||||
join TARGET.datasource d on d.id=rd.datasource;
|
||||
compute stats TARGET.result_denorm;
|
||||
|
||||
alter table TARGET.result_denorm rename to TARGET.result;
|
||||
drop table TARGET.res_tmp;
|
||||
--- done!
|
||||
|
|
@ -5,32 +5,108 @@
|
|||
------------------------------------------------------
|
||||
|
||||
-- Dataset temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
|
||||
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||
CREATE TABLE ${stats_db_name}.dataset_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
)
|
||||
clustered by (id) into 100 buckets stored AS orc tblproperties ('transactional' = 'true');
|
||||
|
||||
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal,
|
||||
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
|
||||
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
|
||||
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
|
||||
'dataset' AS type
|
||||
INSERT INTO ${stats_db_name}.dataset_tmp
|
||||
SELECT substr(d.id, 4) AS id,
|
||||
d.title[0].value AS title,
|
||||
d.publisher.value AS publisher,
|
||||
cast(null AS string) AS journal,
|
||||
d.dateofacceptance.value as date,
|
||||
date_format(d.dateofacceptance.value, 'yyyy') AS year,
|
||||
d.bestaccessright.classname AS bestlicence,
|
||||
d.embargoenddate.value AS embargo_end_date,
|
||||
false AS delayed,
|
||||
size(d.author) AS authors,
|
||||
concat_ws('\u003B', d.source.value) AS source,
|
||||
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
|
||||
'dataset' AS type
|
||||
FROM ${openaire_db_name}.dataset d
|
||||
WHERE d.datainfo.deletedbyinference=FALSE;
|
||||
WHERE d.datainfo.deletedbyinference = FALSE;
|
||||
|
||||
-- Dataset_citations
|
||||
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and d.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_citations AS
|
||||
SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
|
||||
FROM ${openaire_db_name}.dataset d
|
||||
LATERAL VIEW explode(d.extrainfo) citations AS citation
|
||||
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
|
||||
and d.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_classifications AS
|
||||
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_concepts AS
|
||||
SELECT substr(p.id, 4) as id, contexts.context.id as concept
|
||||
from ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.context) contexts as context
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
|
||||
CREATE TABLE ${stats_db_name}.dataset_datasources AS
|
||||
SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
|
||||
FROM (
|
||||
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.instance) instances AS instance
|
||||
where p.datainfo.deletedbyinference = false) p
|
||||
LEFT OUTER JOIN (
|
||||
SELECT substr(d.id, 4) id
|
||||
FROM ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_languages AS
|
||||
SELECT substr(p.id, 4) AS id, p.language.classname AS language
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_oids AS
|
||||
SELECT substr(p.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.originalid) oids AS ids
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_pids AS
|
||||
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.pid) pids AS ppid
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.dataset_topics AS
|
||||
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
|
||||
FROM ${openaire_db_name}.dataset p
|
||||
LATERAL VIEW explode(p.subject) subjects AS subject
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -5,32 +5,108 @@
|
|||
--------------------------------------------------------
|
||||
|
||||
-- Software temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
|
||||
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||
CREATE TABLE ${stats_db_name}.software_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
)
|
||||
clustered by (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
|
||||
|
||||
INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal,
|
||||
s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
|
||||
s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
|
||||
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
'software' as type
|
||||
INSERT INTO ${stats_db_name}.software_tmp
|
||||
SELECT substr(s.id, 4) as id,
|
||||
s.title[0].value AS title,
|
||||
s.publisher.value AS publisher,
|
||||
CAST(NULL AS string) AS journal,
|
||||
s.dateofacceptance.value AS DATE,
|
||||
date_format(s.dateofacceptance.value, 'yyyy') AS YEAR,
|
||||
s.bestaccessright.classname AS bestlicence,
|
||||
s.embargoenddate.value AS embargo_end_date,
|
||||
FALSE AS delayed,
|
||||
SIZE(s.author) AS authors,
|
||||
concat_ws('\u003B', s.source.value) AS source,
|
||||
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
'software' as type
|
||||
from ${openaire_db_name}.software s
|
||||
where s.datainfo.deletedbyinference=false;
|
||||
where s.datainfo.deletedbyinference = false;
|
||||
|
||||
-- Software_citations
|
||||
CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and s.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_citations AS
|
||||
SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
|
||||
FROM ${openaire_db_name}.software s
|
||||
LATERAL VIEW explode(s.extrainfo) citations as citation
|
||||
where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
|
||||
and s.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_classifications AS
|
||||
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_concepts AS
|
||||
SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.context) contexts AS context
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
|
||||
CREATE TABLE ${stats_db_name}.software_datasources AS
|
||||
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource
|
||||
FROM (
|
||||
SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.instance) instances AS instance
|
||||
where p.datainfo.deletedbyinference = false) p
|
||||
LEFT OUTER JOIN (
|
||||
SELECT substr(d.id, 4) id
|
||||
FROM ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_languages AS
|
||||
select substr(p.id, 4) AS id, p.language.classname AS language
|
||||
FROM ${openaire_db_name}.software p
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_oids AS
|
||||
SELECT substr(p.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.originalid) oids AS ids
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_pids AS
|
||||
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.pid) pids AS ppid
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.software_topics AS
|
||||
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
|
||||
FROM ${openaire_db_name}.software p
|
||||
LATERAL VIEW explode(p.subject) subjects AS subject
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
--
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -5,32 +5,99 @@
|
|||
--------------------------------------------------------------------------------
|
||||
|
||||
-- Otherresearchproduct temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp
|
||||
(
|
||||
id STRING,
|
||||
title STRING,
|
||||
publisher STRING,
|
||||
journal STRING,
|
||||
date STRING,
|
||||
year STRING,
|
||||
bestlicence STRING,
|
||||
embargo_end_date STRING,
|
||||
delayed BOOLEAN,
|
||||
authors INT,
|
||||
source STRING,
|
||||
abstract BOOLEAN,
|
||||
type STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
|
||||
|
||||
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal,
|
||||
o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
|
||||
o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
|
||||
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
'other' AS type
|
||||
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp
|
||||
SELECT substr(o.id, 4) AS id,
|
||||
o.title[0].value AS title,
|
||||
o.publisher.value AS publisher,
|
||||
CAST(NULL AS string) AS journal,
|
||||
o.dateofacceptance.value AS DATE,
|
||||
date_format(o.dateofacceptance.value, 'yyyy') AS year,
|
||||
o.bestaccessright.classname AS bestlicence,
|
||||
o.embargoenddate.value as embargo_end_date,
|
||||
FALSE AS delayed,
|
||||
SIZE(o.author) AS authors,
|
||||
concat_ws('\u003B', o.source.value) AS source,
|
||||
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
|
||||
'other' AS type
|
||||
FROM ${openaire_db_name}.otherresearchproduct o
|
||||
WHERE o.datainfo.deletedbyinference=FALSE;
|
||||
WHERE o.datainfo.deletedbyinference = FALSE;
|
||||
|
||||
-- Otherresearchproduct_citations
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and o.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS
|
||||
SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
|
||||
FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation
|
||||
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
|
||||
and o.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS
|
||||
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
|
||||
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
|
||||
SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
|
||||
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS
|
||||
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
|
||||
FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
|
||||
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance
|
||||
where p.datainfo.deletedbyinference = false) p
|
||||
LEFT OUTER JOIN(SELECT substr(d.id, 4) id
|
||||
from ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS
|
||||
SELECT substr(p.id, 4) AS id, p.language.classname AS language
|
||||
FROM ${openaire_db_name}.otherresearchproduct p
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS
|
||||
SELECT substr(p.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS
|
||||
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
|
||||
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS
|
||||
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
|
||||
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject
|
||||
where p.datainfo.deletedbyinference = false;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -1,30 +1,84 @@
|
|||
-- noinspection SqlNoDataSourceInspectionForFile
|
||||
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Project table/view and Project related tables/views
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Project_oids Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
|
||||
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
|
||||
CREATE TABLE ${stats_db_name}.project_oids AS
|
||||
SELECT substr(p.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
|
||||
CREATE TABLE ${stats_db_name}.project_organizations AS
|
||||
SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
|
||||
from ${openaire_db_name}.relation r
|
||||
WHERE r.reltype = 'projectOrganization'
|
||||
and r.datainfo.deletedbyinference = false;
|
||||
|
||||
-- Project_organizations Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
|
||||
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization' and r.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.project_results AS
|
||||
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result
|
||||
FROM ${openaire_db_name}.relation r
|
||||
WHERE r.reltype = 'resultProject'
|
||||
and r.datainfo.deletedbyinference = false;
|
||||
|
||||
-- Project_results Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_results;
|
||||
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject' and r.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.project_tmp
|
||||
(
|
||||
id STRING,
|
||||
acronym STRING,
|
||||
title STRING,
|
||||
funder STRING,
|
||||
funding_lvl0 STRING,
|
||||
funding_lvl1 STRING,
|
||||
funding_lvl2 STRING,
|
||||
ec39 STRING,
|
||||
type STRING,
|
||||
startdate STRING,
|
||||
enddate STRING,
|
||||
start_year INT,
|
||||
end_year INT,
|
||||
duration INT,
|
||||
haspubs STRING,
|
||||
numpubs INT,
|
||||
daysforlastpub INT,
|
||||
delayedpubs INT,
|
||||
callidentifier STRING,
|
||||
code STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
|
||||
|
||||
-- Project table
|
||||
----------------
|
||||
-- Creating and populating temporary Project table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
|
||||
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year INT, end_year INT, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||
|
||||
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, year(p.startdate.value) AS start_year, year(p.enddate.value) AS end_year, CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
|
||||
INSERT INTO ${stats_db_name}.project_tmp
|
||||
SELECT substr(p.id, 4) AS id,
|
||||
p.acronym.value AS acronym,
|
||||
p.title.value AS title,
|
||||
xpath_string(p.fundingtree[0].value, '//funder/name') AS funder,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1,
|
||||
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2,
|
||||
p.ecsc39.value AS ec39,
|
||||
p.contracttype.classname AS type,
|
||||
p.startdate.value AS startdate,
|
||||
p.enddate.value AS enddate,
|
||||
year(p.startdate.value) AS start_year,
|
||||
year(p.enddate.value) AS end_year,
|
||||
CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration,
|
||||
'no' AS haspubs,
|
||||
0 AS numpubs,
|
||||
0 AS daysforlastpub,
|
||||
0 AS delayedpubs,
|
||||
p.callidentifier.value AS callidentifier,
|
||||
p.code.value AS code
|
||||
FROM ${openaire_db_name}.project p
|
||||
WHERE p.datainfo.deletedbyinference = false;
|
||||
|
||||
create table ${stats_db_name}.funder as
|
||||
select distinct xpath_string(fund, '//funder/id') as id, xpath_string(fund, '//funder/name') as name, xpath_string(fund, '//funder/shortname') as shortname
|
||||
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund
|
||||
select distinct xpath_string(fund, '//funder/id') as id,
|
||||
xpath_string(fund, '//funder/name') as name,
|
||||
xpath_string(fund, '//funder/shortname') as shortname
|
||||
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -5,27 +5,137 @@
|
|||
----------------------------------------------------
|
||||
|
||||
-- Views on temporary tables that should be re-created in the end
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result as
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.publication_tmp
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.software_tmp
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.dataset_tmp
|
||||
UNION ALL
|
||||
SELECT *, bestlicence AS access_mode
|
||||
FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||
|
||||
-- Views on final tables
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_datasources
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_datasources
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_datasources
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_citations
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_citations
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_citations
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_classifications
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_classifications
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_classifications
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_concepts
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_concepts
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_concepts
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_languages
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_languages
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_languages
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_oids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_oids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_oids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_pids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_pids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_pids
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.publication_topics
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.software_topics
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.dataset_topics
|
||||
UNION ALL
|
||||
SELECT *
|
||||
FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
|
||||
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization' and r.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.result_organization AS
|
||||
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
|
||||
FROM ${openaire_db_name}.relation r
|
||||
WHERE r.reltype = 'resultOrganization'
|
||||
and r.datainfo.deletedbyinference = false;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
|
||||
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;
|
||||
CREATE TABLE ${stats_db_name}.result_projects AS
|
||||
select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend
|
||||
FROM ${stats_db_name}.result r
|
||||
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
|
||||
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -5,54 +5,105 @@
|
|||
-- Datasource table/view and Datasource related tables/views
|
||||
------------------------------------------------------------
|
||||
------------------------------------------------------------
|
||||
|
||||
-- Datasource table creation & update
|
||||
-------------------------------------
|
||||
-- Creating and populating temporary datasource table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
|
||||
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
|
||||
CREATE TABLE ${stats_db_name}.datasource_tmp
|
||||
(
|
||||
`id` string,
|
||||
`name` STRING,
|
||||
`type` STRING,
|
||||
`dateofvalidation` STRING,
|
||||
`yearofvalidation` string,
|
||||
`harvested` BOOLEAN,
|
||||
`piwik_id` INT,
|
||||
`latitude` STRING,
|
||||
`longitude` STRING,
|
||||
`websiteurl` STRING,
|
||||
`compatibility` STRING
|
||||
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
|
||||
|
||||
-- Insert statement that takes into account the piwik_id of the openAIRE graph
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp
|
||||
SELECT substr(d1.id, 4) AS id, officialname.value AS name,
|
||||
datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d1.dateofvalidation.value,'yyyy') AS yearofvalidation,
|
||||
FALSE AS harvested,
|
||||
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
|
||||
d1.latitude.value AS latitude, d1.longitude.value AS longitude,
|
||||
d1.websiteurl.value AS websiteurl, d1.openairecompatibility.classid AS compatibility
|
||||
SELECT substr(d1.id, 4) AS id,
|
||||
officialname.value AS name,
|
||||
datasourcetype.classname AS type,
|
||||
dateofvalidation.value AS dateofvalidation,
|
||||
date_format(d1.dateofvalidation.value, 'yyyy') AS yearofvalidation,
|
||||
FALSE AS harvested,
|
||||
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
|
||||
d1.latitude.value AS latitude,
|
||||
d1.longitude.value AS longitude,
|
||||
d1.websiteurl.value AS websiteurl,
|
||||
d1.openairecompatibility.classid AS compatibility
|
||||
FROM ${openaire_db_name}.datasource d1
|
||||
LEFT OUTER JOIN
|
||||
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
|
||||
FROM ${openaire_db_name}.datasource
|
||||
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
|
||||
WHERE originalidd like "piwik:%") AS d2
|
||||
ON d1.id = d2.id
|
||||
WHERE d1.datainfo.deletedbyinference=FALSE;
|
||||
LEFT OUTER JOIN
|
||||
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
|
||||
FROM ${openaire_db_name}.datasource
|
||||
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
|
||||
WHERE originalidd like "piwik:%") AS d2
|
||||
ON d1.id = d2.id
|
||||
WHERE d1.datainfo.deletedbyinference = FALSE;
|
||||
|
||||
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
|
||||
-- Creating a temporary dual table that will be removed after the following insert
|
||||
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
|
||||
INSERT INTO ${stats_db_name}.dual VALUES('X');
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
|
||||
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
|
||||
CREATE TABLE ${stats_db_name}.dual
|
||||
(
|
||||
dummy CHAR(1)
|
||||
);
|
||||
INSERT INTO ${stats_db_name}.dual
|
||||
VALUES ('X');
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
|
||||
`piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
|
||||
SELECT 'other',
|
||||
'Other',
|
||||
'Repository',
|
||||
NULL,
|
||||
NULL,
|
||||
false,
|
||||
0,
|
||||
NULL,
|
||||
NULL,
|
||||
NULL,
|
||||
'unknown'
|
||||
FROM ${stats_db_name}.dual
|
||||
WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
|
||||
DROP TABLE ${stats_db_name}.dual;
|
||||
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
|
||||
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
|
||||
UPDATE ${stats_db_name}.datasource_tmp
|
||||
SET name='Other'
|
||||
WHERE name = 'Unknown Repository';
|
||||
UPDATE ${stats_db_name}.datasource_tmp
|
||||
SET yearofvalidation=null
|
||||
WHERE yearofvalidation = '-1';
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
|
||||
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
|
||||
CREATE TABLE ${stats_db_name}.datasource_languages AS
|
||||
SELECT substr(d.id, 4) AS id, langs.languages AS language
|
||||
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
|
||||
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
|
||||
CREATE TABLE ${stats_db_name}.datasource_oids AS
|
||||
SELECT substr(d.id, 4) AS id, oids.ids AS oid
|
||||
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
|
||||
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
|
||||
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization' and r.datainfo.deletedbyinference=false;
|
||||
CREATE TABLE ${stats_db_name}.datasource_organizations AS
|
||||
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
|
||||
FROM ${openaire_db_name}.relation r
|
||||
WHERE r.reltype = 'datasourceOrganization'
|
||||
and r.datainfo.deletedbyinference = false;
|
||||
|
||||
-- datasource sources:
|
||||
-- where the datasource info have been collected from.
|
||||
create table if not exists ${stats_db_name}.datasource_sources AS select substr(d.id,4) as id, substr(cf.key, 4) as datasource from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf where d.datainfo.deletedbyinference=false;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
|
||||
create table if not exists ${stats_db_name}.datasource_sources AS
|
||||
select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
|
||||
from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
|
||||
where d.datainfo.deletedbyinference = false;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
|
||||
SELECT datasource AS id, id AS result
|
||||
FROM ${stats_db_name}.result_datasources;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS FOR COLUMNS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -3,10 +3,21 @@
|
|||
-- Organization table/view and Organization related tables/views
|
||||
----------------------------------------------------------------
|
||||
----------------------------------------------------------------
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.organization;
|
||||
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
|
||||
FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
|
||||
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS
|
||||
SELECT substr(o.id, 4) as id,
|
||||
o.legalname.value as name,
|
||||
o.legalshortname.value as legalshortname,
|
||||
o.country.classid as country
|
||||
FROM ${openaire_db_name}.organization o
|
||||
WHERE o.datainfo.deletedbyinference = FALSE;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS
|
||||
SELECT organization AS id, id AS datasource
|
||||
FROM ${stats_db_name}.datasource_organizations;
|
||||
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS
|
||||
SELECT id AS project, organization as id
|
||||
FROM ${stats_db_name}.project_organizations;
|
||||
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS;
|
||||
-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS FOR COLUMNS;
|
||||
|
|
@ -1,4 +1,4 @@
|
|||
#!/usr/bin/env bash
|
||||
|
||||
curl --request GET $1/cache/updateCache
|
||||
|
||||
sleep 20h
|
||||
|
|
@ -17,6 +17,14 @@
|
|||
<name>stats_db_shadow_name</name>
|
||||
<description>the name of the shadow schema</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>monitor_db_name</name>
|
||||
<description>the target monitor db name</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>monitor_db_shadow_name</name>
|
||||
<description>the name of the shadow monitor db</description>
|
||||
</property>
|
||||
<property>
|
||||
<name>stats_tool_api_url</name>
|
||||
<description>The url of the API of the stats tool. Is used to trigger the cache update.</description>
|
||||
|
|
@ -252,31 +260,6 @@
|
|||
<param>stats_db_name=${stats_db_name}</param>
|
||||
<param>openaire_db_name=${openaire_db_name}</param>
|
||||
</hive2>
|
||||
<ok to="Step17"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step17">
|
||||
<hive2 xmlns="uri:oozie:hive2-action:0.1">
|
||||
<jdbc-url>${hive_jdbc_url}</jdbc-url>
|
||||
<script>scripts/step17.sql</script>
|
||||
<param>stats_db_name=${stats_db_name}</param>
|
||||
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
|
||||
</hive2>
|
||||
<ok to="Step18"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step18">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>impala-shell.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>step18.sql</argument>
|
||||
<argument>${wf:appPath()}/scripts/step18.sql</argument>
|
||||
<file>impala-shell.sh</file>
|
||||
</shell>
|
||||
<ok to="Step19"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
|
@ -285,17 +268,31 @@
|
|||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>impala-shell.sh</exec>
|
||||
<exec>finalizedb.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${stats_db_shadow_name}</argument>
|
||||
<argument>step19.sql</argument>
|
||||
<argument>${wf:appPath()}/scripts/step19.sql</argument>
|
||||
<file>impala-shell.sh</file>
|
||||
<file>finalizedb.sh</file>
|
||||
</shell>
|
||||
<ok to="Step20"/>
|
||||
<ok to="step20-createMonitorDB"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step20">
|
||||
<action name="step20-createMonitorDB">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
<exec>monitor.sh</exec>
|
||||
<argument>${stats_db_name}</argument>
|
||||
<argument>${monitor_db_name}</argument>
|
||||
<argument>${monitor_db_shadow_name}</argument>
|
||||
<argument>${wf:appPath()}/scripts/step20-createMonitorDB.sql</argument>
|
||||
<file>monitor.sh</file>
|
||||
</shell>
|
||||
<ok to="Step21"/>
|
||||
<error to="Kill"/>
|
||||
</action>
|
||||
|
||||
<action name="Step21">
|
||||
<shell xmlns="uri:oozie:shell-action:0.1">
|
||||
<job-tracker>${jobTracker}</job-tracker>
|
||||
<name-node>${nameNode}</name-node>
|
||||
|
|
|
|||
Loading…
Reference in New Issue