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[UsageCount] addition of usagecount for Projects and datasources

This commit is contained in:
Claudio Atzori 2023-05-22 15:00:46 +02:00
parent 04141fe259
commit db625e548d
11 changed files with 349 additions and 43 deletions

View File

@ -14,7 +14,6 @@ import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.api.java.function.MapGroupsFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
@ -28,9 +27,7 @@ import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.common.ModelConstants;
import eu.dnetlib.dhp.schema.oaf.DataInfo;
import eu.dnetlib.dhp.schema.oaf.Measure;
import eu.dnetlib.dhp.schema.oaf.Result;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils;
import scala.Tuple2;
@ -76,16 +73,22 @@ public class SparkAtomicActionUsageJob implements Serializable {
isSparkSessionManaged,
spark -> {
removeOutputDir(spark, outputPath);
prepareResults(dbname, spark, workingPath);
prepareData(dbname, spark, workingPath + "/usageDb", "usage_stats", "result_id");
prepareData(dbname, spark, workingPath + "/projectDb", "project_stats", "id");
prepareData(dbname, spark, workingPath + "/datasourceDb", "datasource_stats", "repositor_id");
writeActionSet(spark, workingPath, outputPath);
});
}
public static void prepareResults(String db, SparkSession spark, String workingPath) {
private static void prepareData(String dbname, SparkSession spark, String workingPath, String tableName,
String attribute_name) {
spark
.sql(
"Select result_id, downloads, views " +
"from " + db + ".usage_stats")
String
.format(
"select %s as id, sum(downloads) as downloads, sum(views) as views " +
"from %s.%s group by %s",
attribute_name, dbname, tableName, attribute_name))
.as(Encoders.bean(UsageStatsModel.class))
.write()
.mode(SaveMode.Overwrite)
@ -94,23 +97,17 @@ public class SparkAtomicActionUsageJob implements Serializable {
}
public static void writeActionSet(SparkSession spark, String inputPath, String outputPath) {
readPath(spark, inputPath, UsageStatsModel.class)
.groupByKey((MapFunction<UsageStatsModel, String>) us -> us.getResult_id(), Encoders.STRING())
.mapGroups((MapGroupsFunction<String, UsageStatsModel, Result>) (k, it) -> {
UsageStatsModel first = it.next();
it.forEachRemaining(us -> {
first.setDownloads(first.getDownloads() + us.getDownloads());
first.setViews(first.getViews() + us.getViews());
});
Result res = new Result();
res.setId("50|" + k);
res.setMeasures(getMeasure(first.getDownloads(), first.getViews()));
return res;
}, Encoders.bean(Result.class))
getFinalIndicatorsResult(spark, inputPath + "/usageDb")
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p))
.union(
getFinalIndicatorsProject(spark, inputPath + "/projectDb")
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p)))
.union(
getFinalIndicatorsDatasource(spark, inputPath + "/datasourceDb")
.toJavaRDD()
.map(p -> new AtomicAction(p.getClass(), p)))
.mapToPair(
aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
new Text(OBJECT_MAPPER.writeValueAsString(aa))))
@ -118,6 +115,39 @@ public class SparkAtomicActionUsageJob implements Serializable {
}
private static Dataset<Result> getFinalIndicatorsResult(SparkSession spark, String inputPath) {
return readPath(spark, inputPath, UsageStatsModel.class)
.map((MapFunction<UsageStatsModel, Result>) usm -> {
Result r = new Result();
r.setId("50|" + usm.getId());
r.setMeasures(getMeasure(usm.getDownloads(), usm.getViews()));
return r;
}, Encoders.bean(Result.class));
}
private static Dataset<Project> getFinalIndicatorsProject(SparkSession spark, String inputPath) {
return readPath(spark, inputPath, UsageStatsModel.class)
.map((MapFunction<UsageStatsModel, Project>) usm -> {
Project p = new Project();
p.setId("40|" + usm.getId());
p.setMeasures(getMeasure(usm.getDownloads(), usm.getViews()));
return p;
}, Encoders.bean(Project.class));
}
private static Dataset<Datasource> getFinalIndicatorsDatasource(SparkSession spark, String inputPath) {
return readPath(spark, inputPath, UsageStatsModel.class)
.map((MapFunction<UsageStatsModel, Datasource>) usm -> {
Datasource d = new Datasource();
d.setId("10|" + usm.getId());
d.setMeasures(getMeasure(usm.getDownloads(), usm.getViews()));
return d;
}, Encoders.bean(Datasource.class));
}
private static List<Measure> getMeasure(Long downloads, Long views) {
DataInfo dataInfo = OafMapperUtils
.dataInfo(

View File

@ -4,16 +4,16 @@ package eu.dnetlib.dhp.actionmanager.usagestats;
import java.io.Serializable;
public class UsageStatsModel implements Serializable {
private String result_id;
private String id;
private Long downloads;
private Long views;
public String getResult_id() {
return result_id;
public String getId() {
return id;
}
public void setResult_id(String result_id) {
this.result_id = result_id;
public void setId(String id) {
this.id = id;
}
public Long getDownloads() {

View File

@ -89,7 +89,7 @@
<arg>--hive_metastore_uris</arg><arg>${hiveMetastoreUris}</arg>
<arg>--outputPath</arg><arg>${outputPath}</arg>
<arg>--usagestatsdb</arg><arg>${usagestatsdb}</arg>
<arg>--workingPath</arg><arg>${workingDir}/usageDb</arg>
<arg>--workingPath</arg><arg>${workingDir}</arg>
</spark>
<ok to="End"/>
<error to="Kill"/>

View File

@ -24,6 +24,7 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.Result;
public class SparkAtomicActionCountJobTest {
@ -68,24 +69,26 @@ public class SparkAtomicActionCountJobTest {
@Test
void testMatch() {
String usageScoresPath = getClass()
.getResource("/eu/dnetlib/dhp/actionmanager/usagestats/usagestatsdb")
.getResource("/eu/dnetlib/dhp/actionmanager/usagestats")
.getPath();
SparkAtomicActionUsageJob.writeActionSet(spark, usageScoresPath, workingDir.toString() + "/actionSet");
final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
JavaRDD<Result> tmp = sc
JavaRDD<AtomicAction> tmp = sc
.sequenceFile(workingDir.toString() + "/actionSet", Text.class, Text.class)
.map(usm -> OBJECT_MAPPER.readValue(usm._2.getBytes(), AtomicAction.class))
.map(aa -> (Result) aa.getPayload());
.map(usm -> OBJECT_MAPPER.readValue(usm._2.getBytes(), AtomicAction.class));
// .map(aa -> (Result) aa.getPayload());
Assertions.assertEquals(9, tmp.count());
Assertions.assertEquals(9, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("50|")).count());
Assertions.assertEquals(9, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("10|")).count());
Assertions.assertEquals(9, tmp.filter(aa -> ((OafEntity) aa.getPayload()).getId().startsWith("40|")).count());
tmp.foreach(r -> Assertions.assertEquals(2, r.getMeasures().size()));
tmp.foreach(r -> Assertions.assertEquals(2, ((OafEntity) r.getPayload()).getMeasures().size()));
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
@ -95,14 +98,14 @@ public class SparkAtomicActionCountJobTest {
.forEach(u -> Assertions.assertFalse(u.getDataInfo().getDeletedbyinference()))));
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
m -> m.getUnit().stream().forEach(u -> Assertions.assertTrue(u.getDataInfo().getInferred()))));
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
@ -113,7 +116,7 @@ public class SparkAtomicActionCountJobTest {
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
@ -127,7 +130,7 @@ public class SparkAtomicActionCountJobTest {
u.getDataInfo().getProvenanceaction().getClassid()))));
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
@ -142,7 +145,7 @@ public class SparkAtomicActionCountJobTest {
tmp
.foreach(
r -> r
r -> ((OafEntity) r.getPayload())
.getMeasures()
.stream()
.forEach(
@ -157,12 +160,19 @@ public class SparkAtomicActionCountJobTest {
Assertions
.assertEquals(
1, tmp.filter(r -> r.getId().equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6")).count());
1,
tmp
.filter(
r -> ((OafEntity) r.getPayload())
.getId()
.equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6"))
.count());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
@ -178,6 +188,7 @@ public class SparkAtomicActionCountJobTest {
.assertEquals(
"5",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
@ -194,6 +205,7 @@ public class SparkAtomicActionCountJobTest {
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|doi_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
@ -209,6 +221,7 @@ public class SparkAtomicActionCountJobTest {
.assertEquals(
"1",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|doi_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
@ -225,6 +238,7 @@ public class SparkAtomicActionCountJobTest {
.assertEquals(
"2",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|doi_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
@ -240,6 +254,7 @@ public class SparkAtomicActionCountJobTest {
.assertEquals(
"6",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("50|doi_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
@ -251,6 +266,204 @@ public class SparkAtomicActionCountJobTest {
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"5",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"1",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"2",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"6",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("40|f12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"5",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d1__________::53575dc69e9ace947e02d47ecd54a7a6"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"0",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"1",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d11_________::17eda2ff77407538fbe5d3d719b9d1c0"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"2",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("downloads"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
Assertions
.assertEquals(
"6",
tmp
.map(r -> ((OafEntity) r.getPayload()))
.filter(r -> r.getId().equals("10|d12_________::3085e4c6e051378ca6157fe7f0430c1f"))
.collect()
.get(0)
.getMeasures()
.stream()
.filter(m -> m.getId().equals("views"))
.collect(Collectors.toList())
.get(0)
.getUnit()
.get(0)
.getValue());
}
}

View File

@ -0,0 +1,9 @@
{"id":"d1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":5}
{"id":"d11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"d11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"d11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"d12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":6}
{"id":"d12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"d12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"d13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":10}
{"id":"d13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

View File

@ -0,0 +1,12 @@
{"id":"d1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":4}
{"id":"d1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":1}
{"id":"d11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"d11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"d11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"d12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":3}
{"id":"d12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":0,"views":3}
{"id":"d12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"d12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"d13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":8}
{"id":"d13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":0,"views":2}
{"id":"d13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

View File

@ -0,0 +1,9 @@
{"id":"f1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":5}
{"id":"f11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"f11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"f11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"f12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":6}
{"id":"f12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"f12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"f13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":10}
{"id":"f13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

View File

@ -0,0 +1,12 @@
{"id":"f1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":4}
{"id":"f1__________::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":1}
{"id":"f11_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"f11_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"f11_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"f12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":3}
{"id":"f12_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":0,"views":3}
{"id":"f12_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"f12_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"f13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":8}
{"id":"f13_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":0,"views":2}
{"id":"f13_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

View File

@ -0,0 +1,9 @@
{"id":"dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":5}
{"id":"doi_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"doi_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"doi_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"doi_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":6}
{"id":"doi_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"doi_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
{"id":"doi_________::3c3b65f07c1a06c7894397eda1d11bbf","downloads":1,"views":10}
{"id":"doi_________::4938a71a884dd481d329657aa543b850","downloads":0,"views":3}

View File

@ -0,0 +1,12 @@
{"id":"dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":4}
{"id":"dedup_wf_001::53575dc69e9ace947e02d47ecd54a7a6","downloads":0,"views":1}
{"id":"doi_________::17eda2ff77407538fbe5d3d719b9d1c0","downloads":0,"views":1}
{"id":"doi_________::1d4dc08605fd0a2be1105d30c63bfea1","downloads":1,"views":3}
{"id":"doi_________::2e3527822854ca9816f6dfea5bff61a8","downloads":1,"views":1}
{"id":"doi_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":2,"views":3}
{"id":"doi_________::3085e4c6e051378ca6157fe7f0430c1f","downloads":0,"views":3}
{"id":"doi_________::33f710e6dd30cc5e67e35b371ddc33cf","downloads":0,"views":1}
{"id":"doi_________::39738ebf10654732dd3a7af9f24655f8","downloads":1,"views":3}
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@ -801,7 +801,7 @@
<mockito-core.version>3.3.3</mockito-core.version>
<mongodb.driver.version>3.4.2</mongodb.driver.version>
<vtd.version>[2.12,3.0)</vtd.version>
<dhp-schemas.version>[2.12.1-patched]</dhp-schemas.version>
<dhp-schemas.version>[2.13.1-patched]</dhp-schemas.version>
<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>