Merge pull request 'prepare_ror_actionset' (#106) from prepare_ror_actionset into stable_ids

Reviewed-on: D-Net/dnet-hadoop#106

Thanks Michele, looks good to me.

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/GenerateRorActionSetJob.java

@@ -0,0 +1,226 @@
+
+package eu.dnetlib.dhp.actionmanager.ror;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+import static eu.dnetlib.dhp.schema.common.ModelConstants.ENTITYREGISTRY_PROVENANCE_ACTION;
+import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.dataInfo;
+import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.field;
+import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.listKeyValues;
+import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.qualifier;
+import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.structuredProperty;
+
+import java.io.InputStream;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.Collection;
+import java.util.Date;
+import java.util.LinkedHashSet;
+import java.util.List;
+import java.util.Map;
+import java.util.Optional;
+import java.util.Set;
+import java.util.stream.Collectors;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileSystem;
+import org.apache.hadoop.fs.Path;
+import org.apache.hadoop.io.Text;
+import org.apache.hadoop.mapred.SequenceFileOutputFormat;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.actionmanager.project.SparkAtomicActionJob;
+import eu.dnetlib.dhp.actionmanager.ror.model.ExternalIdType;
+import eu.dnetlib.dhp.actionmanager.ror.model.RorOrganization;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.schema.action.AtomicAction;
+import eu.dnetlib.dhp.schema.oaf.DataInfo;
+import eu.dnetlib.dhp.schema.oaf.Field;
+import eu.dnetlib.dhp.schema.oaf.KeyValue;
+import eu.dnetlib.dhp.schema.oaf.Organization;
+import eu.dnetlib.dhp.schema.oaf.Qualifier;
+import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
+import eu.dnetlib.dhp.utils.DHPUtils;
+import scala.Tuple2;
+
+public class GenerateRorActionSetJob {
+
+	private static final String COUNTRIES_VOC = "dnet:countries";
+
+	private static final Logger log = LoggerFactory.getLogger(GenerateRorActionSetJob.class);
+
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	private static final List<KeyValue> ROR_COLLECTED_FROM = listKeyValues(
+		"10|openaire____::993a7ae7a863813cf95028b50708e222", "ROR");
+
+	private static final DataInfo ROR_DATA_INFO = dataInfo(
+		false, "", false, false, ENTITYREGISTRY_PROVENANCE_ACTION, "0.92");
+
+	private static final Qualifier ROR_PID_TYPE = qualifier("ROR", "ROR", "dnet:pid_types", "dnet:pid_types");
+
+	public static void main(final String[] args) throws Exception {
+
+		final String jsonConfiguration = IOUtils
+			.toString(
+				SparkAtomicActionJob.class
+					.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/ror/action_set_parameters.json"));
+
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+
+		parser.parseArgument(args);
+
+		final Boolean isSparkSessionManaged = Optional
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
+
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		final String inputPath = parser.get("inputPath");
+		log.info("inputPath: {}", inputPath);
+
+		final String outputPath = parser.get("outputPath");
+		log.info("outputPath {}: ", outputPath);
+
+		final SparkConf conf = new SparkConf();
+
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> {
+			removeOutputDir(spark, outputPath);
+			processRorOrganizations(spark, inputPath, outputPath);
+		});
+	}
+
+	private static void removeOutputDir(final SparkSession spark, final String path) {
+		HdfsSupport.remove(path, spark.sparkContext().hadoopConfiguration());
+	}
+
+	private static void processRorOrganizations(final SparkSession spark,
+		final String inputPath,
+		final String outputPath) throws Exception {
+
+		readInputPath(spark, inputPath)
+			.map(GenerateRorActionSetJob::convertRorOrg, Encoders.bean(Organization.class))
+			.toJavaRDD()
+			.map(o -> new AtomicAction<>(Organization.class, o))
+			.mapToPair(
+				aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
+					new Text(OBJECT_MAPPER.writeValueAsString(aa))))
+			.saveAsHadoopFile(outputPath, Text.class, Text.class, SequenceFileOutputFormat.class);
+	}
+
+	protected static Organization convertRorOrg(final RorOrganization r) {
+
+		final Date now = new Date();
+
+		final Organization o = new Organization();
+
+		o.setId(String.format("20|ror_________::%s", DHPUtils.md5(r.getId())));
+		o.setOriginalId(Arrays.asList(r.getId()));
+		o.setCollectedfrom(ROR_COLLECTED_FROM);
+		o.setPid(pids(r));
+		o.setDateofcollection(now.toString());
+		o.setDateoftransformation(now.toString());
+		o.setExtraInfo(new ArrayList<>()); // Values not present in the file
+		o.setOaiprovenance(null); // Values not present in the file
+		o.setLegalshortname(field(r.getAcronyms().stream().findFirst().orElse(r.getName()), ROR_DATA_INFO));
+		o.setLegalname(field(r.getName(), ROR_DATA_INFO));
+		o.setAlternativeNames(alternativeNames(r));
+		o.setWebsiteurl(field(r.getLinks().stream().findFirst().orElse(null), ROR_DATA_INFO));
+		o.setLogourl(null);
+		o.setEclegalbody(null);
+		o.setEclegalperson(null);
+		o.setEcnonprofit(null);
+		o.setEcresearchorganization(null);
+		o.setEchighereducation(null);
+		o.setEcinternationalorganizationeurinterests(null);
+		o.setEcinternationalorganization(null);
+		o.setEcenterprise(null);
+		o.setEcsmevalidated(null);
+		o.setEcnutscode(null);
+		if (r.getCountry() != null) {
+			o
+				.setCountry(
+					qualifier(
+						r.getCountry().getCountryCode(), r.getCountry().getCountryName(), COUNTRIES_VOC,
+						COUNTRIES_VOC));
+		} else {
+			o.setCountry(null);
+		}
+		o.setDataInfo(ROR_DATA_INFO);
+		o.setLastupdatetimestamp(now.getTime());
+
+		return o;
+	}
+
+	private static List<StructuredProperty> pids(final RorOrganization r) {
+		final List<StructuredProperty> pids = new ArrayList<>();
+		pids.add(structuredProperty(r.getId(), ROR_PID_TYPE, ROR_DATA_INFO));
+
+		for (final Map.Entry<String, ExternalIdType> e : r.getExternalIds().entrySet()) {
+			final String type = e.getKey();
+			final Object all = e.getValue().getAll();
+			if (all == null) {
+				// skip
+			} else if (all instanceof String) {
+				pids
+					.add(
+						structuredProperty(
+							all.toString(), qualifier(type, type, "dnet:pid_types", "dnet:pid_types"), ROR_DATA_INFO));
+			} else if (all instanceof Collection) {
+				for (final Object pid : (Collection<?>) all) {
+					pids
+						.add(
+							structuredProperty(
+								pid.toString(), qualifier(type, type, "dnet:pid_types", "dnet:pid_types"),
+								ROR_DATA_INFO));
+				}
+			} else if (all instanceof String[]) {
+				for (final String pid : (String[]) all) {
+					pids
+						.add(
+							structuredProperty(
+								pid, qualifier(type, type, "dnet:pid_types", "dnet:pid_types"), ROR_DATA_INFO));
+				}
+			} else {
+				log.warn("Invalid type for pid list: " + all.getClass());
+			}
+		}
+
+		return pids;
+	}
+
+	private static List<Field<String>> alternativeNames(final RorOrganization r) {
+		final Set<String> names = new LinkedHashSet<>();
+		names.addAll(r.getAliases());
+		names.addAll(r.getAcronyms());
+		r.getLabels().forEach(l -> names.add(l.getLabel()));
+
+		return names
+			.stream()
+			.filter(StringUtils::isNotBlank)
+			.map(s -> field(s, ROR_DATA_INFO))
+			.collect(Collectors.toList());
+	}
+
+	private static Dataset<RorOrganization> readInputPath(
+		final SparkSession spark,
+		final String path) throws Exception {
+
+		try (final FileSystem fileSystem = FileSystem.get(new Configuration());
+			final InputStream is = fileSystem.open(new Path(path))) {
+			final RorOrganization[] arr = OBJECT_MAPPER.readValue(is, RorOrganization[].class);
+			return spark.createDataset(Arrays.asList(arr), Encoders.bean(RorOrganization.class));
+		}
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/Address.java

@@ -0,0 +1,122 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class Address implements Serializable {
+
+	@JsonProperty("lat")
+	private Float lat;
+
+	@JsonProperty("state_code")
+	private String stateCode;
+
+	@JsonProperty("country_geonames_id")
+	private Integer countryGeonamesId;
+
+	@JsonProperty("lng")
+	private Float lng;
+
+	@JsonProperty("state")
+	private String state;
+
+	@JsonProperty("city")
+	private String city;
+
+	@JsonProperty("geonames_city")
+	private GeonamesCity geonamesCity;
+
+	@JsonProperty("postcode")
+	private String postcode;
+
+	@JsonProperty("primary")
+	private Boolean primary;
+
+	@JsonProperty("line")
+	private String line;
+
+	private final static long serialVersionUID = 2444635485253443195L;
+
+	public Float getLat() {
+		return lat;
+	}
+
+	public void setLat(final Float lat) {
+		this.lat = lat;
+	}
+
+	public String getStateCode() {
+		return stateCode;
+	}
+
+	public void setStateCode(final String stateCode) {
+		this.stateCode = stateCode;
+	}
+
+	public Integer getCountryGeonamesId() {
+		return countryGeonamesId;
+	}
+
+	public void setCountryGeonamesId(final Integer countryGeonamesId) {
+		this.countryGeonamesId = countryGeonamesId;
+	}
+
+	public Float getLng() {
+		return lng;
+	}
+
+	public void setLng(final Float lng) {
+		this.lng = lng;
+	}
+
+	public String getState() {
+		return state;
+	}
+
+	public void setState(final String state) {
+		this.state = state;
+	}
+
+	public String getCity() {
+		return city;
+	}
+
+	public void setCity(final String city) {
+		this.city = city;
+	}
+
+	public GeonamesCity getGeonamesCity() {
+		return geonamesCity;
+	}
+
+	public void setGeonamesCity(final GeonamesCity geonamesCity) {
+		this.geonamesCity = geonamesCity;
+	}
+
+	public String getPostcode() {
+		return postcode;
+	}
+
+	public void setPostcode(final String postcode) {
+		this.postcode = postcode;
+	}
+
+	public Boolean getPrimary() {
+		return primary;
+	}
+
+	public void setPrimary(final Boolean primary) {
+		this.primary = primary;
+	}
+
+	public String getLine() {
+		return line;
+	}
+
+	public void setLine(final String line) {
+		this.line = line;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/Country.java

@@ -0,0 +1,34 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class Country implements Serializable {
+
+	@JsonProperty("country_code")
+	private String countryCode;
+
+	@JsonProperty("country_name")
+	private String countryName;
+
+	private final static long serialVersionUID = 4357848706229493627L;
+
+	public String getCountryCode() {
+		return countryCode;
+	}
+
+	public void setCountryCode(final String countryCode) {
+		this.countryCode = countryCode;
+	}
+
+	public String getCountryName() {
+		return countryName;
+	}
+
+	public void setCountryName(final String countryName) {
+		this.countryName = countryName;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/ExternalIdType.java

@@ -0,0 +1,34 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class ExternalIdType implements Serializable {
+
+	@JsonProperty("all")
+	private Object all;
+
+	@JsonProperty("preferred")
+	private String preferred;
+
+	private final static long serialVersionUID = 2616688352998387611L;
+
+	public Object getAll() {
+		return all;
+	}
+
+	public void setAll(final Object all) {
+		this.all = all;
+	}
+
+	public String getPreferred() {
+		return preferred;
+	}
+
+	public void setPreferred(final String preferred) {
+		this.preferred = preferred;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/GeonamesAdmin.java

@@ -0,0 +1,56 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class GeonamesAdmin implements Serializable {
+
+	@JsonProperty("ascii_name")
+	private String asciiName;
+
+	@JsonProperty("id")
+	private Integer id;
+
+	@JsonProperty("name")
+	private String name;
+
+	@JsonProperty("code")
+	private String code;
+
+	private final static long serialVersionUID = 7294958526269195673L;
+
+	public String getAsciiName() {
+		return asciiName;
+	}
+
+	public void setAsciiName(final String asciiName) {
+		this.asciiName = asciiName;
+	}
+
+	public Integer getId() {
+		return id;
+	}
+
+	public void setId(final Integer id) {
+		this.id = id;
+	}
+
+	public String getName() {
+		return name;
+	}
+
+	public void setName(final String name) {
+		this.name = name;
+	}
+
+	public String getCode() {
+		return code;
+	}
+
+	public void setCode(final String code) {
+		this.code = code;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/GeonamesCity.java

@@ -0,0 +1,100 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class GeonamesCity implements Serializable {
+
+	@JsonProperty("geonames_admin1")
+	private GeonamesAdmin geonamesAdmin1;
+
+	@JsonProperty("geonames_admin2")
+	private GeonamesAdmin geonamesAdmin2;
+
+	@JsonProperty("city")
+	private String city;
+
+	@JsonProperty("id")
+	private Integer id;
+
+	@JsonProperty("nuts_level1")
+	private NameAndCode nutsLevel1;
+
+	@JsonProperty("nuts_level2")
+	private NameAndCode nutsLevel2;
+
+	@JsonProperty("nuts_level3")
+	private NameAndCode nutsLevel3;
+
+	@JsonProperty("")
+	private License license;
+
+	private final static long serialVersionUID = -8389480201526252955L;
+
+	public NameAndCode getNutsLevel2() {
+		return nutsLevel2;
+	}
+
+	public void setNutsLevel2(final NameAndCode nutsLevel2) {
+		this.nutsLevel2 = nutsLevel2;
+	}
+
+	public GeonamesAdmin getGeonamesAdmin2() {
+		return geonamesAdmin2;
+	}
+
+	public void setGeonamesAdmin2(final GeonamesAdmin geonamesAdmin2) {
+		this.geonamesAdmin2 = geonamesAdmin2;
+	}
+
+	public GeonamesAdmin getGeonamesAdmin1() {
+		return geonamesAdmin1;
+	}
+
+	public void setGeonamesAdmin1(final GeonamesAdmin geonamesAdmin1) {
+		this.geonamesAdmin1 = geonamesAdmin1;
+	}
+
+	public String getCity() {
+		return city;
+	}
+
+	public void setCity(final String city) {
+		this.city = city;
+	}
+
+	public Integer getId() {
+		return id;
+	}
+
+	public void setId(final Integer id) {
+		this.id = id;
+	}
+
+	public NameAndCode getNutsLevel1() {
+		return nutsLevel1;
+	}
+
+	public void setNutsLevel1(final NameAndCode nutsLevel1) {
+		this.nutsLevel1 = nutsLevel1;
+	}
+
+	public NameAndCode getNutsLevel3() {
+		return nutsLevel3;
+	}
+
+	public void setNutsLevel3(final NameAndCode nutsLevel3) {
+		this.nutsLevel3 = nutsLevel3;
+	}
+
+	public License getLicense() {
+		return license;
+	}
+
+	public void setLicense(final License license) {
+		this.license = license;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/Label.java

@@ -0,0 +1,34 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class Label implements Serializable {
+
+	@JsonProperty("iso639")
+	private String iso639;
+
+	@JsonProperty("label")
+	private String label;
+
+	private final static long serialVersionUID = -6576156103297850809L;
+
+	public String getIso639() {
+		return iso639;
+	}
+
+	public void setIso639(final String iso639) {
+		this.iso639 = iso639;
+	}
+
+	public String getLabel() {
+		return label;
+	}
+
+	public void setLabel(final String label) {
+		this.label = label;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/License.java

@@ -0,0 +1,34 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class License implements Serializable {
+
+	@JsonProperty("attribution")
+	private String attribution;
+
+	@JsonProperty("license")
+	private String license;
+
+	private final static long serialVersionUID = -194308261058176439L;
+
+	public String getAttribution() {
+		return attribution;
+	}
+
+	public void setAttribution(final String attribution) {
+		this.attribution = attribution;
+	}
+
+	public String getLicense() {
+		return license;
+	}
+
+	public void setLicense(final String license) {
+		this.license = license;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/NameAndCode.java

@@ -0,0 +1,34 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class NameAndCode implements Serializable {
+
+	@JsonProperty("name")
+	private String name;
+
+	@JsonProperty("code")
+	private String code;
+
+	private final static long serialVersionUID = 5459836979206140843L;
+
+	public String getName() {
+		return name;
+	}
+
+	public void setName(final String name) {
+		this.name = name;
+	}
+
+	public String getCode() {
+		return code;
+	}
+
+	public void setCode(final String code) {
+		this.code = code;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/Relationship.java

@@ -0,0 +1,45 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class Relationship implements Serializable {
+
+	@JsonProperty("type")
+	private String type;
+
+	@JsonProperty("id")
+	private String id;
+
+	@JsonProperty("label")
+	private String label;
+
+	private final static long serialVersionUID = 7847399503395576960L;
+
+	public String getType() {
+		return type;
+	}
+
+	public void setType(final String type) {
+		this.type = type;
+	}
+
+	public String getId() {
+		return id;
+	}
+
+	public void setId(final String id) {
+		this.id = id;
+	}
+
+	public String getLabel() {
+		return label;
+	}
+
+	public void setLabel(final String label) {
+		this.label = label;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/model/RorOrganization.java

@@ -0,0 +1,192 @@
+
+package eu.dnetlib.dhp.actionmanager.ror.model;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.LinkedHashMap;
+import java.util.List;
+import java.util.Map;
+
+import com.fasterxml.jackson.annotation.JsonProperty;
+
+public class RorOrganization implements Serializable {
+
+	@JsonProperty("ip_addresses")
+	private List<String> ipAddresses = new ArrayList<>();
+
+	@JsonProperty("aliases")
+	private List<String> aliases = new ArrayList<>();
+
+	@JsonProperty("acronyms")
+	private List<String> acronyms = new ArrayList<>();
+
+	@JsonProperty("links")
+	private List<String> links = new ArrayList<>();
+
+	@JsonProperty("country")
+	private Country country;
+
+	@JsonProperty("name")
+	private String name;
+
+	@JsonProperty("wikipedia_url")
+	private String wikipediaUrl;
+
+	@JsonProperty("addresses")
+	private List<Address> addresses = new ArrayList<>();
+
+	@JsonProperty("types")
+	private List<String> types = new ArrayList<>();
+
+	@JsonProperty("established")
+	private Integer established;
+
+	@JsonProperty("relationships")
+	private List<Relationship> relationships = new ArrayList<>();
+
+	@JsonProperty("email_address")
+	private String emailAddress;
+
+	@JsonProperty("external_ids")
+	private Map<String, ExternalIdType> externalIds = new LinkedHashMap<>();
+
+	@JsonProperty("id")
+	private String id;
+
+	@JsonProperty("labels")
+	private List<Label> labels = new ArrayList<>();
+
+	@JsonProperty("status")
+	private String status;
+
+	private final static long serialVersionUID = -2658312087616043225L;
+
+	public List<String> getIpAddresses() {
+		return ipAddresses;
+	}
+
+	public void setIpAddresses(final List<String> ipAddresses) {
+		this.ipAddresses = ipAddresses;
+	}
+
+	public List<String> getAliases() {
+		return aliases;
+	}
+
+	public void setAliases(final List<String> aliases) {
+		this.aliases = aliases;
+	}
+
+	public List<String> getAcronyms() {
+		return acronyms;
+	}
+
+	public void setAcronyms(final List<String> acronyms) {
+		this.acronyms = acronyms;
+	}
+
+	public List<String> getLinks() {
+		return links;
+	}
+
+	public void setLinks(final List<String> links) {
+		this.links = links;
+	}
+
+	public Country getCountry() {
+		return country;
+	}
+
+	public void setCountry(final Country country) {
+		this.country = country;
+	}
+
+	public String getName() {
+		return name;
+	}
+
+	public void setName(final String name) {
+		this.name = name;
+	}
+
+	public String getWikipediaUrl() {
+		return wikipediaUrl;
+	}
+
+	public void setWikipediaUrl(final String wikipediaUrl) {
+		this.wikipediaUrl = wikipediaUrl;
+	}
+
+	public List<Address> getAddresses() {
+		return addresses;
+	}
+
+	public void setAddresses(final List<Address> addresses) {
+		this.addresses = addresses;
+	}
+
+	public List<String> getTypes() {
+		return types;
+	}
+
+	public void setTypes(final List<String> types) {
+		this.types = types;
+	}
+
+	public Integer getEstablished() {
+		return established;
+	}
+
+	public void setEstablished(final Integer established) {
+		this.established = established;
+	}
+
+	public List<Relationship> getRelationships() {
+		return relationships;
+	}
+
+	public void setRelationships(final List<Relationship> relationships) {
+		this.relationships = relationships;
+	}
+
+	public String getEmailAddress() {
+		return emailAddress;
+	}
+
+	public void setEmailAddress(final String emailAddress) {
+		this.emailAddress = emailAddress;
+	}
+
+	public Map<String, ExternalIdType> getExternalIds() {
+		return externalIds;
+	}
+
+	public void setExternalIds(final Map<String, ExternalIdType> externalIds) {
+		this.externalIds = externalIds;
+	}
+
+	public String getId() {
+		return id;
+	}
+
+	public void setId(final String id) {
+		this.id = id;
+	}
+
+	public List<Label> getLabels() {
+		return labels;
+	}
+
+	public void setLabels(final List<Label> labels) {
+		this.labels = labels;
+	}
+
+	public String getStatus() {
+		return status;
+	}
+
+	public void setStatus(final String status) {
+		this.status = status;
+	}
+
+}

dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/ror/action_set_parameters.json

@@ -0,0 +1,14 @@
+[
+	{
+		"paramName": "i",
+		"paramLongName": "inputPath",
+		"paramDescription": "the path of the input json",
+		"paramRequired": true
+	},
+	{
+		"paramName": "o",
+		"paramLongName": "outputPath",
+		"paramDescription": "the path of the new ActionSet",
+		"paramRequired": true
+	}
+]

dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/ror/oozie_app/config-default.xml

@@ -0,0 +1,58 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>spark2YarnHistoryServerAddress</name>
+        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
+    </property>
+    <property>
+        <name>spark2ExtraListeners</name>
+        <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+    </property>
+    <property>
+        <name>spark2SqlQueryExecutionListeners</name>
+        <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>sparkExecutorNumber</name>
+        <value>4</value>
+    </property>
+    <property>
+        <name>spark2EventLogDir</name>
+        <value>/user/spark/spark2ApplicationHistory</value>
+    </property>
+    <property>
+        <name>sparkDriverMemory</name>
+        <value>15G</value>
+    </property>
+    <property>
+        <name>sparkExecutorMemory</name>
+        <value>6G</value>
+    </property>
+    <property>
+        <name>sparkExecutorCores</name>
+        <value>1</value>
+    </property>
+</configuration>

dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/ror/oozie_app/workflow.xml

@@ -0,0 +1,55 @@
+<workflow-app name="Update_ROR_action_set" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>rorJsonInputPath</name>
+            <description>the path of the json</description>
+        </property>
+        <property>
+            <name>rorActionSetPath</name>
+            <description>path where to store the action set</description>
+        </property>
+    </parameters>
+
+    <start to="deleteoutputpath"/>
+    
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+    
+    <action name="deleteoutputpath">
+        <fs>
+            <delete path='${rorActionSetPath}'/>
+            <mkdir path='${rorActionSetPath}'/>
+            <delete path='${workingDir}'/>
+            <mkdir path='${workingDir}'/>
+        </fs>
+        <ok to="processRorFile"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="processRorFile">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>ProcessRorFile</name>
+            <class>eu.dnetlib.dhp.actionmanager.ror.GenerateRorActionSetJob</class>
+            <jar>dhp-aggregation-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-cores=${sparkExecutorCores}
+                --executor-memory=${sparkExecutorMemory}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=3840
+            </spark-opts>
+            <arg>--inputPath</arg><arg>${rorJsonInputPath}</arg>
+            <arg>--outputPath</arg><arg>${rorActionSetPath}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>

dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/ror/GenerateRorActionSetJobTest.java

@@ -0,0 +1,46 @@
+
+package eu.dnetlib.dhp.actionmanager.ror;
+
+import java.io.FileInputStream;
+
+import org.apache.commons.io.IOUtils;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Disabled;
+import org.junit.jupiter.api.Test;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.actionmanager.ror.model.RorOrganization;
+import eu.dnetlib.dhp.schema.oaf.Organization;
+
+@Disabled
+class GenerateRorActionSetJobTest {
+
+	private static final ObjectMapper mapper = new ObjectMapper();
+
+	private static final String local_file_path = "/Users/michele/Downloads/ror-data-2021-04-06.json";
+
+	@BeforeEach
+	void setUp() throws Exception {
+	}
+
+	@Test
+	void testConvertRorOrg() throws Exception {
+		final RorOrganization r = mapper
+			.readValue(IOUtils.toString(getClass().getResourceAsStream("ror_org.json")), RorOrganization.class);
+		final Organization org = GenerateRorActionSetJob.convertRorOrg(r);
+
+		System.out.println(mapper.writeValueAsString(org));
+	}
+
+	@Test
+	void testConvertAllRorOrg() throws Exception {
+		final RorOrganization[] arr = mapper
+			.readValue(IOUtils.toString(new FileInputStream(local_file_path)), RorOrganization[].class);
+
+		for (final RorOrganization r : arr) {
+			GenerateRorActionSetJob.convertRorOrg(r);
+		}
+	}
+
+}

dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/actionmanager/ror/ror_org.json

@@ -0,0 +1,123 @@
+{
+  "ip_addresses": [],
+  "aliases": [],
+  "acronyms": [
+    "ANU"
+  ],
+  "links": [
+    "http://www.anu.edu.au/"
+  ],
+  "country": {
+    "country_code": "AU",
+    "country_name": "Australia"
+  },
+  "name": "Australian National University",
+  "wikipedia_url": "http://en.wikipedia.org/wiki/Australian_National_University",
+  "addresses": [
+    {
+      "lat": -35.2778,
+      "state_code": "AU-ACT",
+      "country_geonames_id": 2077456,
+      "lng": 149.1205,
+      "state": "Australian Capital Territory",
+      "city": "Canberra",
+      "geonames_city": {
+        "nuts_level2": {
+          "name": null,
+          "code": null
+        },
+        "geonames_admin2": {
+          "ascii_name": null,
+          "id": null,
+          "name": null,
+          "code": null
+        },
+        "geonames_admin1": {
+          "ascii_name": "ACT",
+          "id": 2177478,
+          "name": "ACT",
+          "code": "AU.01"
+        },
+        "city": "Canberra",
+        "id": 2172517,
+        "nuts_level1": {
+          "name": null,
+          "code": null
+        },
+        "nuts_level3": {
+          "name": null,
+          "code": null
+        },
+        "license": {
+          "attribution": "Data from geonames.org under a CC-BY 3.0 license",
+          "license": "http://creativecommons.org/licenses/by/3.0/"
+        }
+      },
+      "postcode": null,
+      "primary": false,
+      "line": null
+    }
+  ],
+  "types": [
+    "Education"
+  ],
+  "established": 1946,
+  "relationships": [
+    {
+      "type": "Related",
+      "id": "https://ror.org/041c7s516",
+      "label": "Calvary Hospital"
+    },
+    {
+      "type": "Related",
+      "id": "https://ror.org/04h7nbn38",
+      "label": "Canberra Hospital"
+    },
+    {
+      "type": "Related",
+      "id": "https://ror.org/030jpqj15",
+      "label": "Goulburn Base Hospital"
+    },
+    {
+      "type": "Child",
+      "id": "https://ror.org/006a4jj40",
+      "label": "Mount Stromlo Observatory"
+    }
+  ],
+  "email_address": null,
+  "external_ids": {
+    "Wikidata": {
+      "all": [
+        "Q127990"
+      ],
+      "preferred": null
+    },
+    "OrgRef": {
+      "all": [
+        "285106"
+      ],
+      "preferred": null
+    },
+    "ISNI": {
+      "all": [
+        "0000 0001 2180 7477"
+      ],
+      "preferred": null
+    },
+    "FundRef": {
+      "all": [
+        "501100000995",
+        "501100001151",
+        "100009020"
+      ],
+      "preferred": "501100000995"
+    },
+    "GRID": {
+      "all": "grid.1001.0",
+      "preferred": "grid.1001.0"
+    }
+  },
+  "id": "https://ror.org/019wvm592",
+  "labels": [],
+  "status": "active"
+}