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- Update the code which acquires the "IMPALA_HDFS_NODE", to test the "tmp"-dir, instead of the base-dir and introduce retries, to overcome potential file-system failures. This change was suggested by "Sebastian Tymkow" and "Grzegorz Bakalarski". 

- Fix typos.
This commit is contained in:
Lampros Smyrnaios 2024-04-03 13:15:37 +03:00
parent df6e3bda04
commit b7c8acc563
5 changed files with 81 additions and 30 deletions
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20
dhp-workflows/dhp-stats-hist-snaps/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-hist-snaps/oozie_app/copyDataToImpalaCluster.sh
View File

@ -9,15 +9,27 @@ fi
export HADOOP_USER_NAME=$2
IMPALA_HDFS_NODE=''
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu >/dev/null 2>&1; then
COUNTER=0
while [ $COUNTER -lt 3 ]; do
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn1.openaire.eu:8020'
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu >/dev/null 2>&1; then
break
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn2.openaire.eu:8020'
break
else
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER!\n\n"
IMPALA_HDFS_NODE=''
sleep 1
fi
((COUNTER++))
done
if [ -z "$IMPALA_HDFS_NODE" ]; then
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER! $COUNTER\n\n"
exit 1
fi
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE}"
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE} , after ${COUNTER} retries."
function copydb() {

21
dhp-workflows/dhp-stats-monitor-irish/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor-irish/oozie_app/copyDataToImpalaCluster.sh
View File

@ -9,15 +9,28 @@ fi
export HADOOP_USER_NAME=$2
IMPALA_HDFS_NODE=''
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu >/dev/null 2>&1; then
COUNTER=0
while [ $COUNTER -lt 3 ]; do
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn1.openaire.eu:8020'
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu >/dev/null 2>&1; then
break
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn2.openaire.eu:8020'
break
else
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER!\n\n"
IMPALA_HDFS_NODE=''
sleep 1
fi
((COUNTER++))
done
if [ -z "$IMPALA_HDFS_NODE" ]; then
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER! $COUNTER\n\n"
exit 1
fi
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE}"
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE} , after ${COUNTER} retries."
function copydb() {

21
dhp-workflows/dhp-stats-monitor-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats-monitor/oozie_app/copyDataToImpalaCluster.sh
View File

@ -9,15 +9,28 @@ fi
#export HADOOP_USER_NAME=$2
IMPALA_HDFS_NODE=''
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu >/dev/null 2>&1; then
COUNTER=0
while [ $COUNTER -lt 3 ]; do
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn1.openaire.eu:8020'
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu >/dev/null 2>&1; then
break
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn2.openaire.eu:8020'
break
else
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER!\n\n"
IMPALA_HDFS_NODE=''
sleep 1
fi
((COUNTER++))
done
if [ -z "$IMPALA_HDFS_NODE" ]; then
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER! $COUNTER\n\n"
exit 1
fi
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE}"
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE} , after ${COUNTER} retries."
function copydb() {

21
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/copyDataToImpalaCluster.sh
View File

@ -7,15 +7,28 @@ then
fi
IMPALA_HDFS_NODE=''
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu >/dev/null 2>&1; then
COUNTER=0
while [ $COUNTER -lt 3 ]; do
if hdfs dfs -test -e hdfs://impala-cluster-mn1.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn1.openaire.eu:8020'
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu >/dev/null 2>&1; then
break
elif hdfs dfs -test -e hdfs://impala-cluster-mn2.openaire.eu/tmp >/dev/null 2>&1; then
IMPALA_HDFS_NODE='hdfs://impala-cluster-mn2.openaire.eu:8020'
break
else
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER!\n\n"
IMPALA_HDFS_NODE=''
sleep 1
fi
((COUNTER++))
done
if [ -z "$IMPALA_HDFS_NODE" ]; then
echo -e "\n\nPROBLEM WHEN SETTING THE HDFS-NODE FOR IMPALA CLUSTER! $COUNTER\n\n"
exit 1
fi
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE}"
echo "Active IMPALA HDFS Node: ${IMPALA_HDFS_NODE} , after ${COUNTER} retries."
export HADOOP_USER_NAME=$6
export PROD_USAGE_STATS_DB="openaire_prod_usage_stats"

4
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh
View File

@ -85,12 +85,12 @@ hive $HIVE_OPTS --database ${2}_funded -e "show tables" | grep -v WARN | sed "s/
hive -f foo
echo "Updated shadow monitor funded database"
echo "Updating shadow monitor insitutions database"
echo "Updating shadow monitor institutions database"
hive -e "drop database if exists ${SHADOW}_institutions cascade"
hive -e "create database if not exists ${SHADOW}_institutions"
hive $HIVE_OPTS --database ${2}_institutions -e "show tables" | grep -v WARN | sed "s/\(.*\)/create view ${SHADOW}_institutions.\1 as select * from ${2}_institutions.\1;/" > foo
hive -f foo
echo "Shadow db monitor insitutions ready!"
echo "Shadow db monitor institutions ready!"
echo "Updating shadow monitor RIs database"
for i in $contexts