Sprint 5 and other changes

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql

@@ -42,8 +42,181 @@ join datasource on datasource.id = ri.hostedby
 where datasource.id like '%doajarticles%') tmp
 on p.id= tmp.id;
 
+--create table indi_project_pubs_count stored as parquet as
+--select  pr.id id, count(p.id) total_pubs from project_results pr
+--join publication p on p.id=pr.result
+--group by pr.id;
+
+--create table indi_project_datasets_count stored as parquet as
+--select pr.id id, count(d.id) total_datasets from project_results pr
+--join dataset d on d.id=pr.result
+--group by pr.id;
+
+--create table indi_project_software_count stored as parquet as
+--select  pr.id id, count(s.id) total_software from project_results pr
+--join software s on s.id=pr.result
+--group by pr.id;
+
+--create table indi_project_otherresearch_count stored as parquet as
+--select pr.id id, count(o.id) total_other from project_results pr
+--join otherresearchproduct o on o.id=pr.result
+--group by pr.id;
+
+--create table indi_pub_avg_year_country_oa stored as parquet as
+--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
+--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
+ --from
+ --(SELECT year, country, SUM(CASE
+    --WHEN bestlicence='Open Access' THEN 1
+ --ELSE 0
+ --END) AS OpenAccess, SUM(CASE
+ --WHEN bestlicence<>'Open Access' THEN 1
+ --ELSE 0
+ --END) AS NonOpenAccess
+ --FROM publication p
+ --join result_organization ro on p.id=ro.id
+ --join organization o on o.id=ro.organization
+ --where cast(year as int)>=2003 and cast(year as int)<=2021
+ --group by year, country) tmp;
+
+--create table indi_dataset_avg_year_country_oa stored as parquet as
+--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
+--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
+--from
+ --(SELECT year, country, SUM(CASE
+    --WHEN bestlicence='Open Access' THEN 1
+ --ELSE 0
+ --END) AS OpenAccess, SUM(CASE
+ --WHEN bestlicence<>'Open Access' THEN 1
+ --ELSE 0
+ --END) AS NonOpenAccess
+ --FROM dataset d
+ --join result_organization ro on d.id=ro.id
+ --join organization o on o.id=ro.organization
+ --where cast(year as int)>=2003 and cast(year as int)<=2021
+ --group by year, country) tmp;
+
+--create table indi_software_avg_year_country_oa stored as parquet as
+--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
+--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
+--from
+-- (SELECT year, country, SUM(CASE
+    --WHEN bestlicence='Open Access' THEN 1
+-- ELSE 0
+--END) AS OpenAccess, SUM(CASE
+-- WHEN bestlicence<>'Open Access' THEN 1
+-- ELSE 0
+-- END) AS NonOpenAccess
+-- FROM software s
+-- join result_organization ro on s.id=ro.id
+-- join organization o on o.id=ro.organization
+-- where cast(year as int)>=2003 and cast(year as int)<=2021
+-- group by year, country) tmp;
+
+
+--create table indi_other_avg_year_country_oa stored as parquet as
+--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA,
+--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA
+-- from
+-- (SELECT year, country, SUM(CASE
+--    WHEN bestlicence='Open Access' THEN 1
+-- ELSE 0
+-- END) AS OpenAccess, SUM(CASE
+-- WHEN bestlicence<>'Open Access' THEN 1
+-- ELSE 0
+-- END) AS NonOpenAccess
+-- FROM otherresearchproduct orp
+-- join result_organization ro on orp.id=ro.id
+-- join organization o on o.id=ro.organization
+-- where cast(year as int)>=2003 and cast(year as int)<=2021
+-- group by year, country) tmp;
+
+--create table indi_pub_avg_year_context_oa stored as parquet as
+--with total as
+--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from publication_concepts pc
+--join context c on pc.concept like concat('%',c.id,'%')
+--join publication p on p.id=pc.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by c.name, year )
+--select year, name, round(no_of_pubs/total*100,3) averageofpubs
+--from total;
+
+--create table indi_dataset_avg_year_context_oa stored as parquet as
+--with total as
+--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from dataset_concepts pc
+--join context c on pc.concept like concat('%',c.id,'%')
+--join dataset p on p.id=pc.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by c.name, year )
+--select year, name, round(no_of_pubs/total*100,3) averageofdataset
+--from total;
+
+--create table indi_software_avg_year_context_oa stored as parquet as
+--with total as
+--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from software_concepts pc
+--join context c on pc.concept like concat('%',c.id,'%')
+--join software p on p.id=pc.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by c.name, year )
+--select year, name, round(no_of_pubs/total*100,3) averageofsoftware
+--from total;
+
+--create table indi_other_avg_year_context_oa stored as parquet as
+--with total as
+--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from otherresearchproduct_concepts pc
+--join context c on pc.concept like concat('%',c.id,'%')
+--join otherresearchproduct p on p.id=pc.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by c.name, year )
+--select year, name, round(no_of_pubs/total*100,3) averageofother
+--from total;
+
+--create table indi_other_avg_year_content_oa stored as parquet as
+--with total as
+--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
+--from otherresearchproduct_datasources pd
+--join datasource d on datasource=d.id
+--join otherresearchproduct p on p.id=pd.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by d.type, year)
+--select year, type, round(no_of_pubs/total*100,3) averageOfOtherresearchproduct
+--from total;
+
+--create table indi_software_avg_year_content_oa stored as parquet as
+--with total as
+--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
+--from software_datasources pd
+--join datasource d on datasource=d.id
+--join software p on p.id=pd.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by d.type, year)
+--select year, type, round(no_of_pubs/total*100,3) averageOfSoftware
+--from total;
+
+--create table indi_dataset_avg_year_content_oa stored as parquet as
+--with total as
+--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
+--from dataset_datasources pd
+--join datasource d on datasource=d.id
+--join dataset p on p.id=pd.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by d.type, year)
+--select year, type, round(no_of_pubs/total*100,3) averageOfDatasets
+--from total;
+
+--create table indi_pub_avg_year_content_oa stored as parquet as
+--with total as
+--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total
+--from publication_datasources pd
+--join datasource d on datasource=d.id
+--join publication p on p.id=pd.id
+--where cast(year as int)>=2003 and cast(year as int)<=2021
+--group by d.type, year)
+--select year, type, round(no_of_pubs/total*100,3) averageOfPubs
+--from total;
+
 ---- Sprint 2 ----
-create table indi_result_has_cc_licence stored as parquet as
+create table indi_result_has_cc_licence_f stored as parquet as
 select distinct r.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license
 from result r
 left outer join (select r.id, license.type as lic from result r
@@ -60,6 +233,35 @@ join result_licenses as license on license.id = r.id
 WHERE lower(parse_url(license.type, "HOST")) = "creativecommons.org") tmp
 on r.id= tmp.id;
 
+-- EOSC-TR1.1-02M:
+-- ## Indicator: has_cc_license. Creative Commons licensing has become a
+-- de facto standard in scholarly communication and is promoted by many initiatives
+-- like Plan S. This indicator might be only useful when applied
+-- to openly available publications.
+--create table indi_pub_has_cc_licence_tr stored as parquet as
+--select distinct p.id, case when lic='' or lic is null then 0 else 1 end indi_result_org_collabas has_cc_license_tr
+--from publication p
+--left outer join (select p.id, license.type as lic from publication p
+--join publication_licenses as license on license.id = p.id
+--where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
+--on p.id= tmp.id
+
+-- #EOSC-F2-01M_cc  Rich metadata for scholarly publications
+-- ## Indicator: has_cc_license. Creative Commons licensing has become a
+-- de facto standard in scholarly communication and is promoted by many initiatives
+-- like Plan S. This indicator might be only useful when applied
+-- to openly available publications.
+
+-- Same indicator as EOSC-TR1.1-02M (Najko's instructions)
+-- create table indi_pub_has_cc_licence_f stored as parquet as
+-- select
+-- distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_f
+-- from publication p
+-- left outer join (selectp.id,license.type as lic from publication p
+-- join publication_licenses as license on license.id = p.id
+-- where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp
+-- on p.id= tmp.id
+
 create table indi_pub_has_abstract stored as parquet as
 select distinct publication.id, coalesce(abstract, 1) has_abstract
 from publication;
@@ -68,16 +270,16 @@ create table indi_result_with_orcid stored as parquet as
 select distinct r.id, coalesce(has_orcid, 0) as has_orcid
 from result r
 left outer join (select id, 1 as has_orcid from result_orcid) tmp
-on r.id= tmp.id;
+on r.id= tmp.id
-
 
 ---- Sprint 3 ----
+
 create table indi_funded_result_with_fundref stored as parquet as
 select distinct r.id, coalesce(fundref, 0) as fundref
 from project_results r
 left outer join (select distinct id, 1 as fundref from project_results
 where provenance='Harvested') tmp
-on r.id= tmp.id;
+on r.id= tmp.id
 
 create table indi_result_org_country_collab stored as parquet as
 with tmp as
@@ -88,7 +290,7 @@ select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as col
 from tmp as o1
 join tmp as o2 on o1.result=o2.result
 where o1.id<>o2.id and o1.country<>o2.country
-group by o1.id, o1.type,o2.country;
+group by o1.id, o1.type,o2.country
 
 create table indi_result_org_collab stored as parquet as
 with tmp as
@@ -99,7 +301,7 @@ select o1.id org1,o2.id org2, o1.type, count(distinct o1.result) as collaboratio
 from tmp as o1
 join tmp as o2 on o1.result=o2.result
 where o1.id<>o2.id
-group by o1.id, o2.id, o1.type;
+group by o1.id, o2.id, o1.type
 
 create table indi_funder_country_collab stored as parquet as
 with tmp as (select funder, project, country from organization_projects op
@@ -110,7 +312,7 @@ select f1.funder, f1.country, f2.country, count(distinct f1.project) as collabor
 from tmp as f1
 join tmp as f2 on f1.project=f2.project
 where f1.country<>f2.country
-group by f1.funder, f2.country, f1.country;
+group by f1.funder, f2.country, f1.country
 
 create table indi_result_country_collab stored as parquet as
 with tmp as
@@ -121,9 +323,10 @@ select o1.country country1, o2.country country2, o1.type, count(distinct o1.resu
 from tmp as o1
 join tmp as o2 on o1.result=o2.result
 where o1.country<>o2.country
-group by o1.country, o2.country, o1.type;
+group by o1.country, o2.country, o1.type
 
 ---- Sprint 4 ----
+
 create table indi_pub_diamond stored as parquet as
 select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal
 from publication_datasources pd
@@ -132,7 +335,7 @@ select pd.id, 1 as in_diamond_journal from publication_datasources pd
 join datasource d on d.id=pd.datasource
 join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
 and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp
-on pd.id=tmp.id;
+on pd.id=tmp.id
 
 create table indi_pub_hybrid stored as parquet as
 select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid
@@ -142,7 +345,7 @@ select pd.id, 1 as is_hybrid from publication_datasources pd
 join datasource d on d.id=pd.datasource
 join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
 and (ps.journal_is_in_doaj=false and ps.journal_is_oa=false)) tmp
-on pd.id=tmp.id;
+on pd.id=tmp.id
 
 create table indi_is_gold_oa stored as parquet as
 (select distinct pd.id, coalesce(gold_oa, 0) as gold_oa
@@ -152,7 +355,8 @@ select pd.id, 1 as gold_oa from publication_datasources pd
 join datasource d on d.id=pd.datasource
 join stats_ext.plan_s_jn ps on (ps.issn_print=d.issn_printed or ps.issn_online=d.issn_online)
 where ps.journal_is_in_doaj is true or ps.journal_is_oa is true) tmp
-on pd.id=tmp.id);
+on pd.id=tmp.id)
+
 
 create table indi_pub_in_transformative stored as parquet as
 select distinct pd.id, coalesce(is_transformative, 0) as is_transformative
@@ -162,7 +366,7 @@ select  pd.id, 1 as is_transformative from publication_datasources pd
 join datasource d on d.id=pd.datasource
 join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online)
 and ps.is_transformative_journal=true) tmp
-on pd.id=tmp.id;
+on pd.id=tmp.id
 
 create table indi_pub_closed_other_open stored as parquet as
 select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from result_instance ri
@@ -172,9 +376,9 @@ join publication p on p.id=ri.id
 join datasource d on ri.hostedby=d.id
 where d.type like '%Journal%' and ri.accessright='Closed Access' and
 (p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp
-on tmp.id=ri.id;
+on tmp.id=ri.id
-
 
 ---- Sprint 5 ----
+
 create table indi_result_no_of_copies stored as parquet as
-select id, count(id) as number_of_copies from result_instance group by id;
+select id, count(id) as number_of_copies from result_instance group by id