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finalization of implementation and testing

This commit is contained in:
Miriam Baglioni 2023-05-31 18:53:22 +02:00
parent 0389b57ca7
commit 97d72d41c3
12 changed files with 921 additions and 127 deletions

View File

@ -174,6 +174,13 @@ public class PropagationConstant {
return newRelations;
}
public static Relation getRelation(String source, String target, String rel_class){
if (ModelConstants.HAS_PARTICIPANT.equals(rel_class)){
return getParticipantRelation(source, target, rel_class);
}else
return getAffiliationRelation(source, target, rel_class);
}
public static Relation getParticipantRelation(
String source,
String target,

View File

@ -49,7 +49,7 @@ public class PrepareInfo implements Serializable {
// associate projects to all the participant orgs
private static final String PROJECT_ORGANIZATION_QUERY = "SELECT source key, collect_set(target) as valueSet " +
"FROM relation " +
"WHERE lower(relclass) = '" + ModelConstants.IS_PARTICIPANT.toLowerCase() +
"WHERE lower(relclass) = '" + ModelConstants.HAS_PARTICIPANT.toLowerCase() +
"' and datainfo.deletedbyinference = false " +
"GROUP BY source";
@ -103,7 +103,7 @@ public class PrepareInfo implements Serializable {
}
private static void prepareInfo(SparkSession spark, String inputPath, String childParentOrganizationPath,
String currentIterationPath, String resultOrganizationPath, String resultProjectPath, String relationPath) {
String currentIterationPath, String resultOrganizationPath, String projectOrganizationPath, String relationPath) {
Dataset<Relation> relation = readPath(spark, inputPath + "/relation", Relation.class);
relation.createOrReplaceTempView("relation");
@ -129,7 +129,7 @@ public class PrepareInfo implements Serializable {
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(resultProjectPath);
.json(projectOrganizationPath);
relation
.filter(
@ -143,7 +143,7 @@ public class PrepareInfo implements Serializable {
relation
.filter(
(FilterFunction<Relation>) r -> !r.getDataInfo().getDeletedbyinference() &&
r.getRelClass().equals(ModelConstants.IS_PARTICIPANT))
r.getRelClass().equals(ModelConstants.HAS_PARTICIPANT))
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")

View File

@ -39,7 +39,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
.toString(
SparkResultToOrganizationFromIstRepoJob.class
.getResourceAsStream(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/input_propagation_parameter.json"));
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/input_propagation_parameter.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
@ -129,7 +129,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
notReachedFirstParent);
doPropagate(
spark, leavesPath, childParentPath, resultOrganizationPath, graphPath,
spark, leavesPath, childParentPath, resultOrganizationPath, projectOrganizationPath, graphPath,
workingPath, outputPath, propagationCounter);
}
@ -142,20 +142,20 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
StepActions
.execStep(
spark, graphPath + "/result", workingPath + NEW_RESULT_RELATION_PATH,
leavesPath, childParentPath, resultOrganizationPath);
leavesPath, childParentPath, resultOrganizationPath, ModelConstants.HAS_AUTHOR_INSTITUTION);
addNewRelations(spark, workingPath + NEW_RESULT_RELATION_PATH, outputPath);
StepActions
.execStep(
spark, graphPath + "/project", workingPath + NEW_PROJECT_RELATION_PATH,
leavesPath, childParentPath, projectOrganizationPath);
leavesPath, childParentPath, projectOrganizationPath, ModelConstants.HAS_PARTICIPANT);
addNewRelations(spark, workingPath + NEW_PROJECT_RELATION_PATH, outputPath);
}
private static void doPropagate(SparkSession spark, String leavesPath, String childParentPath,
String resultOrganizationPath, String graphPath, String workingPath, String outputPath,
String resultOrganizationPath, String projectOrganizationPath, String graphPath, String workingPath, String outputPath,
PropagationCounter propagationCounter) {
int iteration = 0;
long leavesCount;
@ -164,13 +164,18 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
iteration++;
StepActions
.execStep(
spark, graphPath, workingPath + NEW_RESULT_RELATION_PATH,
leavesPath, childParentPath, resultOrganizationPath);
spark, graphPath + "/result", workingPath + NEW_RESULT_RELATION_PATH,
leavesPath, childParentPath, resultOrganizationPath, ModelConstants.HAS_AUTHOR_INSTITUTION);
StepActions
.execStep(
spark, graphPath + "/project", workingPath + NEW_PROJECT_RELATION_PATH,
leavesPath, childParentPath, projectOrganizationPath, ModelConstants.HAS_PARTICIPANT);
StepActions
.prepareForNextStep(
spark, workingPath + NEW_RESULT_RELATION_PATH, resultOrganizationPath, leavesPath,
childParentPath, workingPath + "/leaves", workingPath + "/resOrg");
moveOutput(spark, workingPath, leavesPath, resultOrganizationPath);
spark, workingPath , resultOrganizationPath, projectOrganizationPath, leavesPath,
childParentPath, workingPath + "/leaves", workingPath + "/resOrg", workingPath + "/projOrg");
moveOutput(spark, workingPath, leavesPath, resultOrganizationPath, projectOrganizationPath);
leavesCount = readPath(spark, leavesPath, Leaves.class).count();
} while (leavesCount > 0 && iteration < MAX_ITERATION);
@ -199,6 +204,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
}
addNewRelations(spark, workingPath + NEW_RESULT_RELATION_PATH, outputPath);
addNewRelations(spark, workingPath + NEW_PROJECT_RELATION_PATH, outputPath);
}
private static void moveOutput(SparkSession spark, String workingPath, String leavesPath,
@ -217,6 +223,28 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
}
private static void moveOutput(SparkSession spark, String workingPath, String leavesPath,
String resultOrganizationPath, String projectOrganizationPath) {
readPath(spark, workingPath + "/leaves", Leaves.class)
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(leavesPath);
readPath(spark, workingPath + "/resOrg", KeyValueSet.class)
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(resultOrganizationPath);
readPath(spark, workingPath + "/projOrg", KeyValueSet.class)
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(projectOrganizationPath);
}
private static void addNewRelations(SparkSession spark, String newRelationPath, String outputPath) {
Dataset<Relation> relation = readPath(spark, newRelationPath, Relation.class);
@ -237,7 +265,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
return Arrays
.asList(
r, getParticipantRelation(
r.getTarget(), r.getSource(), ModelConstants.HAS_PARTICIPANT))
r.getTarget(), r.getSource(), ModelConstants.IS_PARTICIPANT))
.iterator();
}
}

View File

@ -3,6 +3,8 @@ package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.PropagationConstant.readPath;
import static eu.dnetlib.dhp.entitytoorganizationfromsemrel.SparkResultToOrganizationFromSemRel.NEW_PROJECT_RELATION_PATH;
import static eu.dnetlib.dhp.entitytoorganizationfromsemrel.SparkResultToOrganizationFromSemRel.NEW_RESULT_RELATION_PATH;
import java.io.Serializable;
import java.util.*;
@ -26,13 +28,14 @@ public class StepActions implements Serializable {
public static void execStep(SparkSession spark,
String graphPath, String newRelationPath,
String leavesPath, String chldParentOrgPath, String entityOrgPath) {
String leavesPath, String chldParentOrgPath, String entityOrgPath, String rel_class) {
Dataset<Relation> relationGraph = readPath(spark, graphPath, Relation.class);
// select only the relation source target among those proposed by propagation that are not already existent
getNewRels(
newRelationPath, relationGraph,
getPropagationRelation(spark, leavesPath, chldParentOrgPath, entityOrgPath, ModelConstants.HAS_AUTHOR_INSTITUTION));
getPropagationRelation(spark, leavesPath, chldParentOrgPath, entityOrgPath, rel_class));
}
@ -43,16 +46,30 @@ public class StepActions implements Serializable {
changeLeavesSet(spark, leavesPath, chldParentOrgPath, leavesOutputPath);
// add the new relations obtained from propagation to the keyvalueset result organization
updateResultOrganization(
updateEntityOrganization(
spark, resultOrgPath, readPath(spark, selectedRelsPath, Relation.class), orgOutputPath);
}
private static void updateResultOrganization(SparkSession spark, String resultOrgPath,
public static void prepareForNextStep(SparkSession spark, String selectedRelsPath, String resultOrgPath, String projectOrgPath,
String leavesPath, String chldParentOrgPath, String leavesOutputPath,
String orgOutputPath, String outputProjectPath) {
// use of the parents as new leaves set
changeLeavesSet(spark, leavesPath, chldParentOrgPath, leavesOutputPath);
// add the new relations obtained from propagation to the keyvalueset result organization
updateEntityOrganization(
spark, resultOrgPath, readPath(spark, selectedRelsPath + NEW_RESULT_RELATION_PATH, Relation.class), orgOutputPath);
updateEntityOrganization(
spark, projectOrgPath, readPath(spark, selectedRelsPath + NEW_PROJECT_RELATION_PATH, Relation.class), outputProjectPath);
}
private static void updateEntityOrganization(SparkSession spark, String entityOrgPath,
Dataset<Relation> selectedRels, String outputPath) {
Dataset<KeyValueSet> resultOrg = readPath(spark, resultOrgPath, KeyValueSet.class);
resultOrg
Dataset<KeyValueSet> entityOrg = readPath(spark, entityOrgPath, KeyValueSet.class);
entityOrg
.joinWith(
selectedRels, resultOrg
selectedRels, entityOrg
.col("key")
.equalTo(selectedRels.col("source")),
"left")
@ -111,6 +128,7 @@ public class StepActions implements Serializable {
// construction of the set)
// if at least one relation in the set was not produced by propagation no new relation will be returned
relationDataset
.union(newRels)
.groupByKey((MapFunction<Relation, String>) r -> r.getSource() + r.getTarget(), Encoders.STRING())
@ -127,7 +145,11 @@ public class StepActions implements Serializable {
.getDataInfo()
.getProvenanceaction()
.getClassid()
.equals(PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID))
.equals(PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID) && !rel
.getDataInfo()
.getProvenanceaction()
.getClassid()
.equals(PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_ID))
.count() > 0) {
return null;
}
@ -144,6 +166,8 @@ public class StepActions implements Serializable {
.option("compression", "gzip")
.json(newRelationPath);
}
// get the possible relations from propagation
@ -172,20 +196,21 @@ public class StepActions implements Serializable {
"ON leaves.value = cp.child " +
"JOIN (" +
"SELECT key as entityId, org " +
"FROM resultOrg " +
"FROM entityOrg " +
"LATERAL VIEW explode (valueSet) ks as org ) as ro " +
"ON leaves.value = ro.org " +
"GROUP BY resId")
"GROUP BY entityId")
.as(Encoders.bean(KeyValueSet.class));
// create new relations from result to organization for each result linked to a leaf
// create new relations from entity to organization for each entity linked to a leaf
return resultParent
.flatMap(
(FlatMapFunction<KeyValueSet, Relation>) v -> v
.getValueSet()
.stream()
.map(
orgId -> getAffiliationRelation(
orgId -> getRelation(
v.getKey(),
orgId,
semantics))

View File

@ -361,6 +361,37 @@ public class PrepareInfoJobTest {
}
@Test
public void relationProjectTest() throws Exception {
PrepareInfo
.main(
new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/projectorganizationtest")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation/project")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
Dataset<Relation> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
Assertions.assertEquals(7, verificationDs.count());
}
@Test
public void resultOrganizationTest1() throws Exception {
@ -496,6 +527,141 @@ public class PrepareInfoJobTest {
}
@Test
public void projectOrganizationTest1() throws Exception {
PrepareInfo
.main(
new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/projectorganizationtest")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<KeyValueSet> tmp = sc
.textFile(workingDir.toString() + "/projectOrganization/")
.map(item -> OBJECT_MAPPER.readValue(item, KeyValueSet.class));
Dataset<KeyValueSet> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(KeyValueSet.class));
Assertions.assertEquals(5, verificationDs.count());
Assertions
.assertEquals(
2, verificationDs
.filter("key = '40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f'")
.collectAsList()
.get(0)
.getValueSet()
.size());
Assertions
.assertTrue(
verificationDs
.filter("key = '40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
verificationDs
.filter("key = '40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|pippo_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertEquals(
2, verificationDs
.filter("key = '40|dedup_wf_001::2899e571609779168222fdeb59cb916d'")
.collectAsList()
.get(0)
.getValueSet()
.size());
Assertions
.assertTrue(
verificationDs
.filter("key = '40|dedup_wf_001::2899e571609779168222fdeb59cb916d'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0"));
Assertions
.assertTrue(
verificationDs
.filter("key = '40|dedup_wf_001::2899e571609779168222fdeb59cb916d'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|pippo_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertEquals(
1, verificationDs
.filter("key = '40|doajarticles::03748bcb5d754c951efec9700e18a56d'")
.collectAsList()
.get(0)
.getValueSet()
.size());
Assertions
.assertTrue(
verificationDs
.filter("key = '40|doajarticles::03748bcb5d754c951efec9700e18a56d'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertEquals(
1, verificationDs
.filter("key = '40|openaire____::ec653e804967133b9436fdd30d3ff51d'")
.collectAsList()
.get(0)
.getValueSet()
.size());
Assertions
.assertTrue(
verificationDs
.filter("key = '40|openaire____::ec653e804967133b9436fdd30d3ff51d'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
Assertions
.assertEquals(
1, verificationDs
.filter("key = '40|doajarticles::1cae0b82b56ccd97c2db1f698def7074'")
.collectAsList()
.get(0)
.getValueSet()
.size());
Assertions
.assertTrue(
verificationDs
.filter("key = '40|doajarticles::1cae0b82b56ccd97c2db1f698def7074'")
.collectAsList()
.get(0)
.getValueSet()
.contains("20|opendoar____::a5fcb8eb25ebd6f7cd219e0fa1e6ddc1"));
verificationDs
.foreach((ForeachFunction<KeyValueSet>) v -> System.out.println(OBJECT_MAPPER.writeValueAsString(v)));
}
@Test
public void foundLeavesTest1() throws Exception {

View File

@ -65,23 +65,28 @@ public class SparkJobTest {
}
@Test
public void completeExecution() throws Exception {
public void completeResultExecution() throws Exception {
final String graphPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep")
.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
.getPath();
final String leavesPath = getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath();
final String childParentPath = getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath();
final String resultOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath();
final String projectOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
.getPath();
readPath(spark, leavesPath, Leaves.class)
@ -94,6 +99,11 @@ public class SparkJobTest {
.option("compression", "gzip")
.json(workingDir.toString() + "/orgsInput");
readPath(spark, projectOrgPath, KeyValueSet.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/projectInput");
SparkResultToOrganizationFromSemRel
.main(
@ -104,95 +114,97 @@ public class SparkJobTest {
"-outputPath", workingDir.toString() + "/finalrelation",
"-leavesPath", workingDir.toString() + "/leavesInput",
"-resultOrgPath", workingDir.toString() + "/orgsInput",
"-projectOrganizationPath", workingDir.toString() + "/projectInput",
"-childParentPath", childParentPath,
"-workingDir", workingDir.toString()
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
JavaRDD<Relation> temp = sc
.textFile(workingDir.toString() + "/finalrelation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
tmp.foreach(r -> System.out.println(OBJECT_MAPPER.writeValueAsString(r)));
Assertions.assertEquals(36, temp.count());
Assertions.assertEquals(18, tmp.count());
tmp.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType()));
tmp.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType()));
tmp
JavaRDD<Relation> result = temp.filter(r -> r.getSource().startsWith("50|") || r.getTarget().startsWith("50|"));
Assertions.assertEquals(18, result.count());
result.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType()));
result.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType()));
result
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
tmp
result
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
r.getDataInfo().getProvenanceaction().getClassid()));
tmp
result
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME,
r.getDataInfo().getProvenanceaction().getClassname()));
tmp
result
.foreach(
r -> Assertions
.assertEquals(
"0.85",
r.getDataInfo().getTrust()));
Assertions.assertEquals(9, tmp.filter(r -> r.getSource().substring(0, 3).equals("50|")).count());
tmp
Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("50|")).count());
result
.filter(r -> r.getSource().substring(0, 3).equals("50|"))
.foreach(r -> Assertions.assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass()));
Assertions
.assertEquals(
2, tmp.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
2, result.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
Assertions
.assertEquals(
3, tmp.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
3, result.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
Assertions
.assertEquals(
2, tmp.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
2, result.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
Assertions
.assertEquals(
1, tmp.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
1, result.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
Assertions
.assertEquals(
1, tmp.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
1, result.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
Assertions.assertEquals(9, tmp.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
tmp
Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
result
.filter(r -> r.getSource().substring(0, 3).equals("20|"))
.foreach(r -> Assertions.assertEquals(ModelConstants.IS_AUTHOR_INSTITUTION_OF, r.getRelClass()));
Assertions
.assertEquals(
1, tmp.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
1, result.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
Assertions
.assertEquals(
1, tmp.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
1, result.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
Assertions
.assertEquals(
2, tmp.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
2, result.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
Assertions
.assertEquals(
2, tmp.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
2, result.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
Assertions
.assertEquals(
3, tmp.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
3, result.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
@ -200,14 +212,14 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
@ -215,21 +227,21 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
@ -237,7 +249,7 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
@ -245,7 +257,7 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
@ -253,14 +265,14 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
.contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
@ -268,14 +280,14 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
@ -283,21 +295,21 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
@ -305,7 +317,7 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
@ -313,11 +325,555 @@ public class SparkJobTest {
Assertions
.assertTrue(
tmp
result
.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
.contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
}
@Test
public void completeProjectExecution() throws Exception {
final String graphPath = getClass()
.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
.getPath();
final String leavesPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath();
final String childParentPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath();
final String resultOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath();
final String projectOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
.getPath();
readPath(spark, leavesPath, Leaves.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/leavesInput");
readPath(spark, resultOrgPath, KeyValueSet.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/orgsInput");
readPath(spark, projectOrgPath, KeyValueSet.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/projectInput");
SparkResultToOrganizationFromSemRel
.main(
new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-relationPath", graphPath,
"-hive_metastore_uris", "",
"-outputPath", workingDir.toString() + "/finalrelation",
"-leavesPath", workingDir.toString() + "/leavesInput",
"-resultOrgPath", workingDir.toString() + "/orgsInput",
"-projectOrganizationPath", workingDir.toString() + "/projectInput",
"-childParentPath", childParentPath,
"-workingDir", workingDir.toString()
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> temp = sc
.textFile(workingDir.toString() + "/finalrelation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
Assertions.assertEquals(36, temp.count());
JavaRDD<Relation> project = temp.filter(r -> r.getSource().startsWith("40|") || r.getTarget().startsWith("40|"));
Assertions.assertEquals(18, project.count());
project.foreach(r -> Assertions.assertEquals(ModelConstants.PARTICIPATION, r.getSubRelType()));
project.foreach(r -> Assertions.assertEquals(ModelConstants.PROJECT_ORGANIZATION, r.getRelType()));
project
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
project
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_ID,
r.getDataInfo().getProvenanceaction().getClassid()));
project
.foreach(
r -> Assertions
.assertEquals(
PropagationConstant.PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_NAME,
r.getDataInfo().getProvenanceaction().getClassname()));
project
.foreach(
r -> Assertions
.assertEquals(
"0.85",
r.getDataInfo().getTrust()));
Assertions.assertEquals(9, project.filter(r -> r.getSource().substring(0, 3).equals("40|")).count());
project
.filter(r -> r.getSource().substring(0, 3).equals("40|"))
.foreach(r -> Assertions.assertEquals(ModelConstants.HAS_PARTICIPANT, r.getRelClass()));
Assertions
.assertEquals(
2, project.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
Assertions
.assertEquals(
3, project.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
Assertions
.assertEquals(
2, project.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
Assertions
.assertEquals(
1, project.filter(r -> r.getSource().equals("40|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
Assertions
.assertEquals(
1, project.filter(r -> r.getSource().equals("40|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
Assertions.assertEquals(9, project.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
project
.filter(r -> r.getSource().substring(0, 3).equals("20|"))
.foreach(r -> Assertions.assertEquals(ModelConstants.IS_PARTICIPANT, r.getRelClass()));
Assertions
.assertEquals(
1, project.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
Assertions
.assertEquals(
1, project.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
Assertions
.assertEquals(
2, project.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
Assertions
.assertEquals(
2, project.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
Assertions
.assertEquals(
3, project.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
.contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("40|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
.contains("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
.map(r -> r.getTarget())
.collect()
.contains("40|openaire____::ec653e804967133b9436fdd30d3ff51d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
.map(r -> r.getTarget())
.collect()
.contains("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
.map(r -> r.getTarget())
.collect()
.contains("40|doajarticles::03748bcb5d754c951efec9700e18a56d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
.map(r -> r.getTarget())
.collect()
.contains("40|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
Assertions
.assertTrue(
project
.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
.map(r -> r.getTarget())
.collect()
.contains("40|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
}
@Test
public void singleIterationExecution() throws Exception {
final String graphPath = getClass()
.getResource("/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph")
.getPath();
final String leavesPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath();
final String childParentPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath();
final String resultOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath();
final String projectOrgPath = getClass()
.getResource(
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/projectOrganization/")
.getPath();
readPath(spark, leavesPath, Leaves.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/leavesInput");
readPath(spark, resultOrgPath, KeyValueSet.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/orgsInput");
readPath(spark, projectOrgPath, KeyValueSet.class)
.write()
.option("compression", "gzip")
.json(workingDir.toString() + "/projectInput");
SparkResultToOrganizationFromSemRel
.main(
new String[] {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-relationPath", graphPath,
"-hive_metastore_uris", "",
"-outputPath", workingDir.toString() + "/finalrelation",
"-leavesPath", workingDir.toString() + "/leavesInput",
"-resultOrgPath", workingDir.toString() + "/orgsInput",
"-projectOrganizationPath", workingDir.toString() + "/projectInput",
"-childParentPath", childParentPath,
"-workingDir", workingDir.toString(),
"-iterations", "1"
});
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> temp = sc
.textFile(workingDir.toString() + "/finalrelation")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
Assertions.assertEquals(16, temp.count());
Assertions.assertEquals(4, temp.filter(r -> r.getSource().startsWith("50|")).count());
Assertions.assertEquals(4, temp.filter(r -> r.getTarget().startsWith("50|")).count());
Assertions.assertEquals(4, temp.filter(r -> r.getSource().startsWith("40|")).count());
Assertions.assertEquals(4, temp.filter(r -> r.getTarget().startsWith("40|")).count());
Assertions.assertEquals(8, temp.filter(r -> r.getSource().startsWith("20|")).count());
Assertions.assertEquals(8, temp.filter(r -> r.getSource().startsWith("20|")).count());
// JavaRDD<Relation> result = temp.filter(r -> r.getSource().startsWith("50|") || r.getTarget().startsWith("50|"));
// Assertions.assertEquals(18, result.count());
// result.foreach(r -> Assertions.assertEquals(ModelConstants.AFFILIATION, r.getSubRelType()));
// result.foreach(r -> Assertions.assertEquals(ModelConstants.RESULT_ORGANIZATION, r.getRelType()));
// result
// .foreach(
// r -> Assertions
// .assertEquals(
// PropagationConstant.PROPAGATION_DATA_INFO_TYPE, r.getDataInfo().getInferenceprovenance()));
// result
// .foreach(
// r -> Assertions
// .assertEquals(
// PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
// r.getDataInfo().getProvenanceaction().getClassid()));
// result
// .foreach(
// r -> Assertions
// .assertEquals(
// PropagationConstant.PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME,
// r.getDataInfo().getProvenanceaction().getClassname()));
// result
// .foreach(
// r -> Assertions
// .assertEquals(
// "0.85",
// r.getDataInfo().getTrust()));
//
// Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("50|")).count());
// result
// .filter(r -> r.getSource().substring(0, 3).equals("50|"))
// .foreach(r -> Assertions.assertEquals(ModelConstants.HAS_AUTHOR_INSTITUTION, r.getRelClass()));
// Assertions
// .assertEquals(
// 2, result.filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
// Assertions
// .assertEquals(
// 3, result.filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
// Assertions
// .assertEquals(
// 2, result.filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
// Assertions
// .assertEquals(
// 1, result.filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
// Assertions
// .assertEquals(
// 1, result.filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
//
// Assertions.assertEquals(9, result.filter(r -> r.getSource().substring(0, 3).equals("20|")).count());
// result
// .filter(r -> r.getSource().substring(0, 3).equals("20|"))
// .foreach(r -> Assertions.assertEquals(ModelConstants.IS_AUTHOR_INSTITUTION_OF, r.getRelClass()));
// Assertions
// .assertEquals(
// 1, result.filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074")).count());
// Assertions
// .assertEquals(
// 1, result.filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d")).count());
// Assertions
// .assertEquals(
// 2, result.filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f")).count());
// Assertions
// .assertEquals(
// 2, result.filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d")).count());
// Assertions
// .assertEquals(
// 3, result.filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d")).count());
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|openaire____::ec653e804967133b9436fdd30d3ff51d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|openaire____::ec653e804967133b9436fdd30d3ff51d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("50|doajarticles::03748bcb5d754c951efec9700e18a56d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("20|doajarticles::03748bcb5d754c951efec9700e18a56d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|openaire____::ec653e804967133b9436fdd30d3ff51d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|openaire____::ec653e804967133b9436fdd30d3ff51d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"));
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::03748bcb5d754c951efec9700e18a56d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|doajarticles::03748bcb5d754c951efec9700e18a56d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|dedup_wf_001::2899e571609779168222fdeb59cb916d"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|dedup_wf_001::2899e571609779168222fdeb59cb916d"));
//
// Assertions
// .assertTrue(
// result
// .filter(r -> r.getSource().equals("20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"))
// .map(r -> r.getTarget())
// .collect()
// .contains("50|doajarticles::1cae0b82b56ccd97c2db1f698def7074"));
}
}

View File

@ -73,21 +73,21 @@ public class StepActionsTest {
.execStep(
spark, getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/graph/result")
.getPath(),
workingDir.toString() + "/newRelationPath",
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/")
.getPath());
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath(), ModelConstants.HAS_AUTHOR_INSTITUTION);
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
@ -203,19 +203,19 @@ public class StepActionsTest {
spark,
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/relsforiteration1/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/relsforiteration1/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath(),
workingDir.toString() + "/tempLeaves", workingDir.toString() + "/tempOrgs");
@ -248,19 +248,19 @@ public class StepActionsTest {
spark,
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/relsforiteration1/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/relsforiteration1/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/resultOrganization/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/resultOrganization/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/currentIteration/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/currentIteration/")
.getPath(),
getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/execstep/childParentOrg/")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/execstep/childParentOrg/")
.getPath(),
workingDir.toString() + "/tempLeaves", workingDir.toString() + "/tempOrgs");

View File

@ -0,0 +1,7 @@
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{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d","validated":false}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d","validated":false}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0","validated":false}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|doajarticles::03748bcb5d754c951efec9700e18a56d","subRelType":"provision","target":"20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","validated":false}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|openaire____::ec653e804967133b9436fdd30d3ff51d","subRelType":"provision","target":"20|doajarticles::1cae0b82b56ccd97c2db1f698def7074","validated":false}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasParticipant","relType":"datasourceOrganization","source":"40|doajarticles::1cae0b82b56ccd97c2db1f698def7074","subRelType":"provision","target":"20|opendoar____::a5fcb8eb25ebd6f7cd219e0fa1e6ddc1","validated":false}

View File

@ -0,0 +1,7 @@
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","subRelType":"provision","target":"20|dedup_wf_001::2899e571609779168222fdeb59cb916d"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|doajarticles::03748bcb5d754c951efec9700e18a56d","subRelType":"provision","target":"20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|openaire____::ec653e804967133b9436fdd30d3ff51d","subRelType":"provision","target":"20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"hasAuthorInstitution","relType":"datasourceOrganization","source":"50|doajarticles::1cae0b82b56ccd97c2db1f698def7074","subRelType":"provision","target":"20|opendoar____::a5fcb8eb25ebd6f7cd219e0fa1e6ddc1"}

View File

@ -0,0 +1,5 @@
{"key":"40|openaire____::ec653e804967133b9436fdd30d3ff51d","valueSet":["20|doajarticles::1cae0b82b56ccd97c2db1f698def7074"]}
{"key":"40|doajarticles::03748bcb5d754c951efec9700e18a56d","valueSet":["20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f"]}
{"key":"40|doajarticles::1cae0b82b56ccd97c2db1f698def7074","valueSet":["20|opendoar____::a5fcb8eb25ebd6f7cd219e0fa1e6ddc1"]}
{"key":"40|dedup_wf_001::2899e571609779168222fdeb59cb916d","valueSet":["20|pippo_wf_001::2899e571609779168222fdeb59cb916d","20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0"]}
{"key":"40|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","valueSet":["20|pippo_wf_001::2899e571609779168222fdeb59cb916d","20|dedup_wf_001::2899e571609779168222fdeb59cb916d"]}

View File

@ -1,14 +0,0 @@
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{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"isparentof","relType":"datasourceOrganization","source":"20|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"isparentof","relType":"datasourceOrganization","source":"20|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|pippo_wf_001::2899e571609779168222fdeb59cb916d"}
{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1592688952862,"properties":[],"relClass":"isparentof","relType":"datasourceOrganization","source":"20|dedup_wf_001::2899e571609779168222fdeb59cb916d","subRelType":"provision","target":"20|doajarticles::396262ee936f3d3e26ff0e60bea6cae0"}
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