Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi

dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/ModelSupport.java

@@ -5,6 +5,9 @@ import static com.google.common.base.Preconditions.checkArgument;
 
 import java.text.ParseException;
 import java.text.SimpleDateFormat;
+import java.time.Instant;
+import java.time.format.DateTimeFormatter;
+import java.time.temporal.TemporalAccessor;
 import java.util.Date;
 import java.util.Map;
 import java.util.Objects;
@@ -477,8 +480,6 @@ public class ModelSupport {
 		return ((OafEntity) t).getId();
 	}
 
-	public static final String ISO8601FORMAT = "yyyy-MM-dd'T'HH:mm:ssZ";
-
 	public static String oldest(String dateA, String dateB) throws ParseException {
 
 		if (StringUtils.isBlank(dateA)) {
@@ -489,8 +490,8 @@ public class ModelSupport {
 		}
 		if (StringUtils.isNotBlank(dateA) && StringUtils.isNotBlank(dateB)) {
 
-			final Date a = new SimpleDateFormat(ISO8601FORMAT).parse(dateA);
+			final Date a = Date.from(Instant.from(DateTimeFormatter.ISO_INSTANT.parse(dateA)));
-			final Date b = new SimpleDateFormat(ISO8601FORMAT).parse(dateB);
+			final Date b = Date.from(Instant.from(DateTimeFormatter.ISO_INSTANT.parse(dateB)));
 
 			return a.before(b) ? dateA : dateB;
 		} else {

dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/oaf/MergeTest.java

@@ -85,6 +85,11 @@ public class MergeTest {
 		b = createRel(true, "2016-04-05T12:41:19.202Z");
 		a.mergeFrom(b);
 		assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
+
+		a = createRel(true, "2016-05-07T12:41:19.202Z");
+		b = createRel(true, "2016-04-05T12:41:19.202Z");
+		a.mergeFrom(b);
+		assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
 	}
 
 	@Test

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizedb.sh

@@ -0,0 +1,18 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export SOURCE=$1
+export SHADOW=$2
+
+echo "Updating shadow database"
+impala-shell -d ${SOURCE} -q "invalidate metadata"
+impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${SOURCE}.\1;/" | impala-shell -c -f -
+impala-shell -q "create database if not exists ${SHADOW}"
+impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -c -f -
+impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
+echo "Shadow db ready!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-shell.sh

@@ -1,18 +0,0 @@
-export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
-export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
-if ! [ -L $link_folder ]
-then
-    rm -Rf "$link_folder"
-    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
-fi
-
-echo "Getting file from " $3
-hdfs dfs -copyToLocal $3
-
-echo "Running impala shell make the new database visible"
-impala-shell -q "INVALIDATE METADATA;"
-
-echo "Running impala shell to compute new table stats"
-impala-shell -d $1 -f $2
-echo "Impala shell finished"
-rm $2

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh

@@ -0,0 +1,25 @@
+export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
+export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
+if ! [ -L $link_folder ]
+then
+    rm -Rf "$link_folder"
+    ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
+fi
+
+export SOURCE=$1
+export TARGET=$2
+export SHADOW=$3
+export SCRIPT_PATH=$4
+
+echo "Getting file from " $4
+hdfs dfs -copyToLocal $4
+
+echo "Creating monitor database"
+cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 | impala-shell -f -
+echo "Impala shell finished"
+
+echo "Updating shadow monitor database"
+impala-shell -q "create database if not exists ${SHADOW}"
+impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
+impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f -
+echo "Shadow db ready!"

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql

@@ -3,14 +3,37 @@
 -- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
 ------------------------------------------------------------------------------------------------
 ------------------------------------------------------------------------------------------------
-CREATE OR REPLACE VIEW  ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
+CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS
-CREATE OR REPLACE VIEW  ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
+SELECT *
-CREATE OR REPLACE VIEW  ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
+FROM ${external_stats_db_name}.fundref;
-CREATE OR REPLACE VIEW  ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
+
-CREATE OR REPLACE VIEW  ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
+CREATE OR REPLACE VIEW ${stats_db_name}.country AS
-CREATE OR REPLACE VIEW  ${stats_db_name}.context AS SELECT * FROM ${external_stats_db_name}.context;
+SELECT *
-CREATE OR REPLACE VIEW  ${stats_db_name}.category AS SELECT * FROM ${external_stats_db_name}.category;
+FROM ${external_stats_db_name}.country;
-CREATE OR REPLACE VIEW  ${stats_db_name}.concept AS SELECT * FROM ${external_stats_db_name}.concept;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS
+SELECT *
+FROM ${external_stats_db_name}.countrygdp;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS
+SELECT *
+FROM ${external_stats_db_name}.roarmap;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS
+SELECT *
+FROM ${external_stats_db_name}.rndexpediture;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.context AS
+SELECT *
+FROM ${external_stats_db_name}.context;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.category AS
+SELECT *
+FROM ${external_stats_db_name}.category;
+
+CREATE OR REPLACE VIEW ${stats_db_name}.concept AS
+SELECT *
+FROM ${external_stats_db_name}.concept;
 
 
 ------------------------------------------------------------------------------------------------
@@ -18,4 +41,8 @@ CREATE OR REPLACE VIEW  ${stats_db_name}.concept AS SELECT * FROM ${external_sta
 -- Creation date of the database
 ------------------------------------------------------------------------------------------------
 ------------------------------------------------------------------------------------------------
-create table ${stats_db_name}.creation_date as select date_format(current_date(), 'dd-MM-yyyy') as date;
+create table ${stats_db_name}.creation_date as
+select date_format(current_date(), 'dd-MM-yyyy') as date;
+--
+-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql

@@ -5,40 +5,114 @@
 ----------------------------------------------------------------
 
 --Datasource temporary table updates
-UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
+UPDATE ${stats_db_name}.datasource_tmp
+SET harvested='true'
+WHERE datasource_tmp.id IN (SELECT DISTINCT d.id
+                            FROM ${stats_db_name}.datasource_tmp d,
+                                 ${stats_db_name}.result_datasources rd
+                            WHERE d.id = rd.datasource);
 
 -- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
-UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
+UPDATE ${stats_db_name}.project_tmp
+SET haspubs='yes'
+WHERE project_tmp.id IN (SELECT pr.id
+                         FROM ${stats_db_name}.project_results pr,
+                              ${stats_db_name}.result r
+                         WHERE pr.result = r.id
+                           AND r.type = 'publication');
 
-DROP TABLE IF EXISTS ${stats_db_name}.project;
 CREATE TABLE ${stats_db_name}.project stored as parquet as
-SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration, 
+SELECT p.id,
-CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs, 
+       p.acronym,
-CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs, 
+       p.title,
-CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub, 
+       p.funder,
-CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
+       p.funding_lvl0,
-p.callidentifier, p.code
+       p.funding_lvl1,
+       p.funding_lvl2,
+       p.ec39,
+       p.type,
+       p.startdate,
+       p.enddate,
+       p.start_year,
+       p.end_year,
+       p.duration,
+       CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END            AS haspubs,
+       CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END             AS numpubs,
+       CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
+       CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END             AS delayedpubs,
+       p.callidentifier,
+       p.code
 FROM ${stats_db_name}.project_tmp p
-LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
+         LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
-        FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id 
+                    FROM ${stats_db_name}.project_results pr
-        WHERE r.type='publication' 
+                             INNER JOIN ${stats_db_name}.result r ON pr.result = r.id
+                    WHERE r.type = 'publication'
                     GROUP BY pr.id) AS prr1 on prr1.id = p.id
-LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
+         LEFT JOIN (SELECT pp.id,
-        FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r 
+                           max(datediff(to_date(r.date), to_date(pp.enddate))) AS daysForlastPub,
-        WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0 
+                           count(distinct r.id)                                AS dp
+                    FROM ${stats_db_name}.project_tmp pp,
+                         ${stats_db_name}.project_results pr,
+                         ${stats_db_name}.result r
+                    WHERE pp.id = pr.id
+                      AND pr.result = r.id
+                      AND r.type = 'publication'
+                      AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
                     GROUP BY pp.id) AS prr2
                    ON prr2.id = p.id;
 
--- Publication temporary table updates
+UPDATE ${stats_db_name}.publication_tmp
-UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+SET delayed = 'yes'
+WHERE publication_tmp.id IN (SELECT distinct r.id
+                             FROM stats_wf_db_obs.result r,
+                                  ${stats_db_name}.project_results pr,
+                                  ${stats_db_name}.project_tmp p
+                             WHERE r.id = pr.result
+                               AND pr.id = p.id
+                               AND to_date(r.date) - to_date(p.enddate) > 0);
 
--- Dataset temporary table updates
+UPDATE ${stats_db_name}.dataset_tmp
-UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+SET delayed = 'yes'
+WHERE dataset_tmp.id IN (SELECT distinct r.id
+                         FROM stats_wf_db_obs.result r,
+                              ${stats_db_name}.project_results pr,
+                              ${stats_db_name}.project_tmp p
+                         WHERE r.id = pr.result
+                           AND pr.id = p.id
+                           AND to_date(r.date) - to_date(p.enddate) > 0);
 
--- Software temporary table updates
+UPDATE ${stats_db_name}.software_tmp
-UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+SET delayed = 'yes'
+WHERE software_tmp.id IN (SELECT distinct r.id
+                          FROM ${stats_db_name}.result r,
+                               ${stats_db_name}.project_results pr,
+                               ${stats_db_name}.project_tmp p
+                          WHERE r.id = pr.result
+                            AND pr.id = p.id
+                            AND to_date(r.date) - to_date(p.enddate) > 0);
 
--- Oherresearchproduct temporary table updates
+UPDATE ${stats_db_name}.otherresearchproduct_tmp
-UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
+SET delayed = 'yes'
+WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
+                                      FROM ${stats_db_name}.result r,
+                                           ${stats_db_name}.project_results pr,
+                                           ${stats_db_name}.project_tmp p
+                                      WHERE r.id = pr.result
+                                        AND pr.id = p.id
+                                        AND to_date(r.date) - to_date(p.enddate) > 0);
 
-CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM  ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;
+CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
+SELECT result_projects.id          AS result,
+       result_projects.project     AS project_results,
+       result.date                 as resultdate,
+       project.enddate             as projectenddate,
+       result_projects.daysfromend AS daysfromend
+FROM ${stats_db_name}.result_projects,
+     ${stats_db_name}.result,
+     ${stats_db_name}.project
+WHERE result_projects.id = result.id
+  AND result.type = 'publication'
+  AND project.id = result_projects.project;
+
+-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql

@@ -1,21 +1,25 @@
 ------------------------------------------------------------------------------------------------------
 -- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
 ------------------------------------------------------------------------------------------------------
+CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS
+SELECT *
+FROM ${stats_db_name}.datasource_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.datasource;
+CREATE TABLE ${stats_db_name}.publication stored AS parquet AS
-CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
+SELECT *
+FROM ${stats_db_name}.publication_tmp;
 
-DROP TABLE IF EXISTS  ${stats_db_name}.publication;
+CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS
-CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
+SELECT *
+FROM ${stats_db_name}.dataset_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.dataset;
+CREATE TABLE ${stats_db_name}.software stored AS parquet AS
-CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
+SELECT *
+FROM ${stats_db_name}.software_tmp;
 
-DROP TABLE IF EXISTS ${stats_db_name}.software;
+CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS
-CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
+SELECT *
-
+FROM ${stats_db_name}.otherresearchproduct_tmp;
-DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
-CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
 
 DROP TABLE ${stats_db_name}.project_tmp;
 DROP TABLE ${stats_db_name}.datasource_tmp;
@@ -29,10 +33,47 @@ DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
 ---------------------------------------------
 
 -- Result
-CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
+CREATE OR REPLACE VIEW ${stats_db_name}.result AS
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.publication
+UNION ALL
+SELECT *, bestlicence as access_mode
+FROM ${stats_db_name}.software
+UNION ALL
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.dataset
+UNION ALL
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.otherresearchproduct;
 
 
 -------------------------------------------------------------------------------
 -- To see with Antonis if the following is needed and where it should be placed
 -------------------------------------------------------------------------------
-CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;
+CREATE TABLE ${stats_db_name}.numbers_country AS
+SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications
+FROM ${stats_db_name}.result r,
+     ${stats_db_name}.result_datasources rd,
+     ${stats_db_name}.datasource d,
+     ${stats_db_name}.datasource_organizations dor,
+     ${stats_db_name}.organization org
+WHERE r.id = rd.id
+  AND rd.datasource = d.id
+  AND d.id = dor.id
+  AND dor.organization = org.id
+  AND r.type = 'publication'
+  AND r.bestlicence = 'Open Access'
+GROUP BY org.country;
+
+-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql

@@ -57,3 +57,12 @@ UNION ALL
 SELECT * FROM ${stats_db_name}.software_sources
 UNION ALL
 SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
+--
+-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql

@@ -47,3 +47,16 @@ FROM (
         SELECT substr(d.id, 4) id 
         from ${openaire_db_name}.datasource d 
         WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;
+
+-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql

@@ -34,3 +34,12 @@ union all
 select * from ${stats_db_name}.software_refereed
 union all
 select * from ${stats_db_name}.otherresearchproduct_refereed;
+--
+-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16.sql

@@ -78,3 +78,14 @@ join ${stats_db_name}.datasource d on d.id=rd.datasource
 join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
 join ${stats_db_name}.organization o on o.id=dor.organization
 where o.country is not null and o.country!='';
+
+-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql

@@ -53,3 +53,6 @@ drop table if exists ${stats_db_name}.result;
 drop view if exists ${stats_db_name}.result;
 create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
 drop table ${stats_db_name}.result_tmp;
+--
+-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_6.sql

@@ -29,4 +29,11 @@ select rcount.pid, sum(case when rcount.type='publication' then rcount.count els
 from rcount
 group by rcount.pid;
 
-create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture
+create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
+--
+-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step17.sql

@@ -1,207 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- Shadow schema table exchange
-------------------------------------------------------
-------------------------------------------------------
-
--- Dropping old views
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
-DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
-
-
--- Creating the shadow database, in case it doesn't exist
-CREATE database IF NOT EXISTS ${stats_db_shadow_name};
-
--- Creating new views
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
-CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step18.sql

@@ -1,8 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- Impala table statistics - Needed to make the tables
--- visible for impala
-------------------------------------------------------
-------------------------------------------------------
-
-INVALIDATE METADATA ${stats_db_name};

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step19.sql

@@ -1,8 +0,0 @@
-------------------------------------------------------
-------------------------------------------------------
--- Impala table statistics - Needed to make the tables
--- visible for impala
-------------------------------------------------------
-------------------------------------------------------
-
-INVALIDATE METADATA ${stats_db_name};

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql

@@ -5,40 +5,109 @@
 --------------------------------------------------------------
 
 -- Publication temporary table
-DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
+CREATE TABLE ${stats_db_name}.publication_tmp
+(
+    id               STRING,
+    title            STRING,
+    publisher        STRING,
+    journal          STRING,
+    date             STRING,
+    year             STRING,
+    bestlicence      STRING,
+    embargo_end_date STRING,
+    delayed          BOOLEAN,
+    authors          INT,
+    source           STRING,
+    abstract         BOOLEAN,
+    type             STRING
+)
+    clustered by (id) into 100 buckets stored as orc tblproperties ('transactional' = 'true');
 
-CREATE TABLE ${stats_db_name}.publication_tmp (id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
+INSERT INTO ${stats_db_name}.publication_tmp
-
+SELECT substr(p.id, 4)                                            as id,
-INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal , 
+       p.title[0].value                                           as title,
-p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
+       p.publisher.value                                          as publisher,
-p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
+       p.journal.name                                             as journal,
-case when size(p.description) > 0 then true else false end as abstract,
+       p.dateofacceptance.value                                   as date,
-'publication' as type
+       date_format(p.dateofacceptance.value, 'yyyy')              as year,
+       p.bestaccessright.classname                                as bestlicence,
+       p.embargoenddate.value                                     as embargo_end_date,
+       false                                                      as delayed,
+       size(p.author)                                             as authors,
+       concat_ws('\u003B', p.source.value)                        as source,
+       case when size(p.description) > 0 then true else false end as abstract,
+       'publication'                                              as type
 from ${openaire_db_name}.publication p
-where p.datainfo.deletedbyinference=false;
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_classifications AS
+SELECT substr(p.id, 4) as id, instancetype.classname as type
+from ${openaire_db_name}.publication p
+         LATERAL VIEW explode(p.instance.instancetype) instances as instancetype
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_concepts AS
+SELECT substr(p.id, 4) as id, contexts.context.id as concept
+from ${openaire_db_name}.publication p
+         LATERAL VIEW explode(p.context) contexts as context
+where p.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.publication_datasources as
 SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
-  FROM (
+FROM (
          SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
          from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
-	where p.datainfo.deletedbyinference=false	) p
+         where p.datainfo.deletedbyinference = false) p
          LEFT OUTER JOIN (
     SELECT substr(d.id, 4) id
     from ${openaire_db_name}.datasource d
-	WHERE d.datainfo.deletedbyinference=false ) d on p.datasource = d.id;
+    WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
 
-CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language FROM ${openaire_db_name}.publication p where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_languages AS
+select substr(p.id, 4) as id, p.language.classname as language
+FROM ${openaire_db_name}.publication p
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_oids AS
+SELECT substr(p.id, 4) AS id, oids.ids AS oid
+FROM ${openaire_db_name}.publication p
+         LATERAL VIEW explode(p.originalid) oids AS ids
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_pids AS
+SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid
+FROM ${openaire_db_name}.publication p
+         LATERAL VIEW explode(p.pid) pids AS ppid
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.publication_topics as
+select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic
+FROM ${openaire_db_name}.publication p
+         LATERAL VIEW explode(p.subject) subjects AS subject
+where p.datainfo.deletedbyinference = false;
 
--- Publication_citations
+CREATE TABLE ${stats_db_name}.publication_citations AS
-CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and p.datainfo.deletedbyinference=false;
+SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
+FROM ${openaire_db_name}.publication p
+         lateral view explode(p.extrainfo) citations AS citation
+WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
+  and p.datainfo.deletedbyinference = false;
+
+-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql

@@ -0,0 +1,121 @@
+drop database if exists TARGET cascade;
+create database if not exists TARGET;
+
+create view if not exists TARGET.category as select * from SOURCE.category;
+create view if not exists TARGET.concept as select * from SOURCE.concept;
+create view if not exists TARGET.context as select * from SOURCE.context;
+create view if not exists TARGET.country as select * from SOURCE.country;
+create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
+create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
+create view if not exists TARGET.funder as select * from SOURCE.funder;
+create view if not exists TARGET.fundref as select * from SOURCE.fundref;
+create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
+--create view if not exists TARGET.roarmap as select * from SOURCE.roarmap;
+
+create table TARGET.result as
+    select distinct * from (
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
+        union all
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) ) foo;
+compute stats TARGET.result;
+
+create table TARGET.result_affiliated_country as select * from SOURCE.result_affiliated_country rac where exists (select 1 from TARGET.result r where r.id=rac.id);
+compute stats TARGET.result_affiliated_country;
+
+create table TARGET.result_citations as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_citations;
+
+create table TARGET.result_classifications as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_classifications;
+
+create table TARGET.result_concepts as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_concepts;
+
+create table TARGET.result_datasources as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_datasources;
+
+create table TARGET.result_deposited_country as select * from SOURCE.result_deposited_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_deposited_country;
+
+create table TARGET.result_fundercount as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_fundercount;
+
+create table TARGET.result_gold as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_gold;
+
+create table TARGET.result_greenoa as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_greenoa;
+
+create table TARGET.result_languages as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_languages;
+
+create table TARGET.result_licences as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_licences;
+
+create table TARGET.result_oids as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_oids;
+
+create table TARGET.result_organization as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_organization;
+
+create table TARGET.result_peerreviewed as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_peerreviewed;
+
+create table TARGET.result_pids as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_pids;
+
+create table TARGET.result_projectcount as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_projectcount;
+
+create table TARGET.result_projects as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_projects;
+
+create table TARGET.result_refereed as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_refereed;
+
+create table TARGET.result_sources as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_sources;
+
+create table TARGET.result_topics as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
+compute stats TARGET.result_topics;
+
+-- datasources
+create view if not exists TARGET.datasource as select * from SOURCE.datasource;
+create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
+create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
+create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
+
+create table TARGET.datasource_results as select id as result, datasource as id from TARGET.result_datasources;
+compute stats TARGET.datasource_results;
+
+-- organizations
+create view if not exists TARGET.organization as select * from SOURCE.organization;
+create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
+create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
+create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
+create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
+
+-- projects
+create view if not exists TARGET.project as select * from SOURCE.project;
+create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
+create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
+create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
+
+create table TARGET.project_results as select id as result, project as id from TARGET.result_projects;
+compute stats TARGET.project_results;
+
+--denorm
+alter table TARGET.result rename to TARGET.res_tmp;
+
+create table TARGET.result_denorm as
+    select distinct r.*, rp.project, p.acronym as pacronym, p.title as ptitle, p.funder as pfunder, p.funding_lvl0 as pfunding_lvl0, rd.datasource, d.name as dname, d.type as dtype
+    from TARGET.res_tmp r
+    join TARGET.result_projects rp on rp.id=r.id
+    join TARGET.result_datasources rd on rd.id=r.id
+    join TARGET.project p on p.id=rp.project
+    join TARGET.datasource d on d.id=rd.datasource;
+compute stats TARGET.result_denorm;
+
+alter table TARGET.result_denorm rename to TARGET.result;
+drop table TARGET.res_tmp;
+--- done!

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql

@@ -5,32 +5,108 @@
 ------------------------------------------------------
 
 -- Dataset temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
+CREATE TABLE ${stats_db_name}.dataset_tmp
-CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
+(
+    id               STRING,
+    title            STRING,
+    publisher        STRING,
+    journal          STRING,
+    date             STRING,
+    year             STRING,
+    bestlicence      STRING,
+    embargo_end_date STRING,
+    delayed          BOOLEAN,
+    authors          INT,
+    source           STRING,
+    abstract         BOOLEAN,
+    type             STRING
+)
+    clustered by (id) into 100 buckets stored AS orc tblproperties ('transactional' = 'true');
 
-INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal, 
+INSERT INTO ${stats_db_name}.dataset_tmp
-d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
+SELECT substr(d.id, 4)                                            AS id,
-d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
+       d.title[0].value                                           AS title,
+       d.publisher.value                                          AS publisher,
+       cast(null AS string)                                       AS journal,
+       d.dateofacceptance.value                                   as date,
+       date_format(d.dateofacceptance.value, 'yyyy')              AS year,
+       d.bestaccessright.classname                                AS bestlicence,
+       d.embargoenddate.value                                     AS embargo_end_date,
+       false                                                      AS delayed,
+       size(d.author)                                             AS authors,
+       concat_ws('\u003B', d.source.value)                        AS source,
        CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
-'dataset' AS type
+       'dataset'                                                  AS type
 FROM ${openaire_db_name}.dataset d
-WHERE d.datainfo.deletedbyinference=FALSE;
+WHERE d.datainfo.deletedbyinference = FALSE;
 
--- Dataset_citations
+CREATE TABLE ${stats_db_name}.dataset_citations AS
-CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d  LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and d.datainfo.deletedbyinference=false;
+SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
+FROM ${openaire_db_name}.dataset d
+         LATERAL VIEW explode(d.extrainfo) citations AS citation
+WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
+  and d.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_classifications AS
+SELECT substr(p.id, 4) AS id, instancetype.classname AS type
+FROM ${openaire_db_name}.dataset p
+         LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_concepts AS
+SELECT substr(p.id, 4) as id, contexts.context.id as concept
+from ${openaire_db_name}.dataset p
+         LATERAL VIEW explode(p.context) contexts as context
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT  substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource 
+CREATE TABLE ${stats_db_name}.dataset_datasources AS
-FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
+SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
-(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
+FROM (
+         SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
+         FROM ${openaire_db_name}.dataset p
+                  LATERAL VIEW explode(p.instance) instances AS instance
+         where p.datainfo.deletedbyinference = false) p
+         LEFT OUTER JOIN (
+    SELECT substr(d.id, 4) id
+    FROM ${openaire_db_name}.datasource d
+    WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
 
-CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_languages AS
+SELECT substr(p.id, 4) AS id, p.language.classname AS language
+FROM ${openaire_db_name}.dataset p
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_oids AS
+SELECT substr(p.id, 4) AS id, oids.ids AS oid
+FROM ${openaire_db_name}.dataset p
+         LATERAL VIEW explode(p.originalid) oids AS ids
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_pids AS
+SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
+FROM ${openaire_db_name}.dataset p
+         LATERAL VIEW explode(p.pid) pids AS ppid
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.dataset_topics AS
+SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
+FROM ${openaire_db_name}.dataset p
+         LATERAL VIEW explode(p.subject) subjects AS subject
+where p.datainfo.deletedbyinference = false;
+--
+-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql

@@ -5,32 +5,108 @@
 --------------------------------------------------------
 
 -- Software temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
+CREATE TABLE ${stats_db_name}.software_tmp
-CREATE TABLE ${stats_db_name}.software_tmp (id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
+(
+    id               STRING,
+    title            STRING,
+    publisher        STRING,
+    journal          STRING,
+    date             STRING,
+    year             STRING,
+    bestlicence      STRING,
+    embargo_end_date STRING,
+    delayed          BOOLEAN,
+    authors          INT,
+    source           STRING,
+    abstract         BOOLEAN,
+    type             STRING
+)
+    clustered by (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
 
-INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal, 
+INSERT INTO ${stats_db_name}.software_tmp
-s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
+SELECT substr(s.id, 4)                                            as id,
-s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
+       s.title[0].value                                           AS title,
+       s.publisher.value                                          AS publisher,
+       CAST(NULL AS string)                                       AS journal,
+       s.dateofacceptance.value                                   AS DATE,
+       date_format(s.dateofacceptance.value, 'yyyy')              AS YEAR,
+       s.bestaccessright.classname                                AS bestlicence,
+       s.embargoenddate.value                                     AS embargo_end_date,
+       FALSE                                                      AS delayed,
+       SIZE(s.author)                                             AS authors,
+       concat_ws('\u003B', s.source.value)                        AS source,
        CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
-'software' as type
+       'software'                                                 as type
 from ${openaire_db_name}.software s
-where s.datainfo.deletedbyinference=false;
+where s.datainfo.deletedbyinference = false;
 
--- Software_citations
+CREATE TABLE ${stats_db_name}.software_citations AS
-CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s  LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and s.datainfo.deletedbyinference=false;
+SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
+FROM ${openaire_db_name}.software s
+         LATERAL VIEW explode(s.extrainfo) citations as citation
+where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
+  and s.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_classifications AS
+SELECT substr(p.id, 4) AS id, instancetype.classname AS type
+FROM ${openaire_db_name}.software p
+         LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_concepts AS
+SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
+FROM ${openaire_db_name}.software p
+         LATERAL VIEW explode(p.context) contexts AS context
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT  substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource 
+CREATE TABLE ${stats_db_name}.software_datasources AS
-FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
+SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource
-(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
+FROM (
+         SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
+         FROM ${openaire_db_name}.software p
+                  LATERAL VIEW explode(p.instance) instances AS instance
+         where p.datainfo.deletedbyinference = false) p
+         LEFT OUTER JOIN (
+    SELECT substr(d.id, 4) id
+    FROM ${openaire_db_name}.datasource d
+    WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
 
-CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_languages AS
+select substr(p.id, 4) AS id, p.language.classname AS language
+FROM ${openaire_db_name}.software p
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_oids AS
+SELECT substr(p.id, 4) AS id, oids.ids AS oid
+FROM ${openaire_db_name}.software p
+         LATERAL VIEW explode(p.originalid) oids AS ids
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_pids AS
+SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
+FROM ${openaire_db_name}.software p
+         LATERAL VIEW explode(p.pid) pids AS ppid
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.software_topics AS
+SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
+FROM ${openaire_db_name}.software p
+         LATERAL VIEW explode(p.subject) subjects AS subject
+where p.datainfo.deletedbyinference = false;
+--
+-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql

@@ -5,32 +5,99 @@
 --------------------------------------------------------------------------------
 
 -- Otherresearchproduct temporary table supporting updates
-DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp
-CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp (   id STRING,   title STRING,   publisher STRING,   journal STRING,   date STRING,   year STRING,   bestlicence STRING,   embargo_end_date STRING,   delayed BOOLEAN,   authors INT,   source STRING,   abstract BOOLEAN,   type STRING )  CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
+(
+    id               STRING,
+    title            STRING,
+    publisher        STRING,
+    journal          STRING,
+    date             STRING,
+    year             STRING,
+    bestlicence      STRING,
+    embargo_end_date STRING,
+    delayed          BOOLEAN,
+    authors          INT,
+    source           STRING,
+    abstract         BOOLEAN,
+    type             STRING
+) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
 
-INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal, 
+INSERT INTO ${stats_db_name}.otherresearchproduct_tmp
-o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
+SELECT substr(o.id, 4)                                            AS id,
-o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
+       o.title[0].value                                           AS title,
-CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
+       o.publisher.value                                          AS publisher,
-'other' AS type 
+       CAST(NULL AS string)                                       AS journal,
+       o.dateofacceptance.value                                   AS DATE,
+       date_format(o.dateofacceptance.value, 'yyyy')              AS year,
+       o.bestaccessright.classname                                AS bestlicence,
+       o.embargoenddate.value                                     as embargo_end_date,
+       FALSE                                                      AS delayed,
+       SIZE(o.author)                                             AS authors,
+       concat_ws('\u003B', o.source.value)                        AS source,
+       CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
+       'other'                                                    AS type
 FROM ${openaire_db_name}.otherresearchproduct o
-WHERE o.datainfo.deletedbyinference=FALSE;
+WHERE o.datainfo.deletedbyinference = FALSE;
 
 -- Otherresearchproduct_citations
-CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o  LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and o.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS
+SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
+FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation
+WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
+  and o.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS
+SELECT substr(p.id, 4) AS id, instancetype.classname AS type
+FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
+SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
+FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT  substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource 
+CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS
-from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
+SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
-(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
+FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
+      from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance
+      where p.datainfo.deletedbyinference = false) p
+         LEFT OUTER JOIN(SELECT substr(d.id, 4) id
+                         from ${openaire_db_name}.datasource d
+                         WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS
+SELECT substr(p.id, 4) AS id, p.language.classname AS language
+FROM ${openaire_db_name}.otherresearchproduct p
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS
+SELECT substr(p.id, 4) AS id, oids.ids AS oid
+FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS
+SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
+FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid
+where p.datainfo.deletedbyinference = false;
 
-CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
+CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS
+SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
+FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject
+where p.datainfo.deletedbyinference = false;
+
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql

@@ -1,30 +1,84 @@
--- noinspection SqlNoDataSourceInspectionForFile
-
 ------------------------------------------------------
 ------------------------------------------------------
 -- Project table/view and Project related tables/views
 ------------------------------------------------------
 ------------------------------------------------------
--- Project_oids Table
+CREATE TABLE ${stats_db_name}.project_oids AS
-DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
+SELECT substr(p.id, 4) AS id, oids.ids AS oid
-CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
+FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
+CREATE TABLE ${stats_db_name}.project_organizations AS
+SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
+from ${openaire_db_name}.relation r
+WHERE r.reltype = 'projectOrganization'
+  and r.datainfo.deletedbyinference = false;
 
--- Project_organizations Table
+CREATE TABLE ${stats_db_name}.project_results AS
-DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
+SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result
-CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization' and r.datainfo.deletedbyinference=false;
+FROM ${openaire_db_name}.relation r
+WHERE r.reltype = 'resultProject'
+  and r.datainfo.deletedbyinference = false;
 
--- Project_results Table
+CREATE TABLE ${stats_db_name}.project_tmp
-DROP TABLE IF EXISTS ${stats_db_name}.project_results;
+(
-CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject' and r.datainfo.deletedbyinference=false;
+    id             STRING,
+    acronym        STRING,
+    title          STRING,
+    funder         STRING,
+    funding_lvl0   STRING,
+    funding_lvl1   STRING,
+    funding_lvl2   STRING,
+    ec39           STRING,
+    type           STRING,
+    startdate      STRING,
+    enddate        STRING,
+    start_year     INT,
+    end_year       INT,
+    duration       INT,
+    haspubs        STRING,
+    numpubs        INT,
+    daysforlastpub INT,
+    delayedpubs    INT,
+    callidentifier STRING,
+    code           STRING
+) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
 
--- Project table
+INSERT INTO ${stats_db_name}.project_tmp
-----------------
+SELECT substr(p.id, 4)                                                 AS id,
--- Creating and populating temporary Project table
+       p.acronym.value                                                 AS acronym,
-DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
+       p.title.value                                                   AS title,
-CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year INT, end_year INT, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
+       xpath_string(p.fundingtree[0].value, '//funder/name')           AS funder,
-
+       xpath_string(p.fundingtree[0].value, '//funding_level_0/name')  AS funding_lvl0,
-INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate,  year(p.startdate.value) AS start_year, year(p.enddate.value) AS end_year, CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
+       xpath_string(p.fundingtree[0].value, '//funding_level_1/name')  AS funding_lvl1,
+       xpath_string(p.fundingtree[0].value, '//funding_level_2/name')  AS funding_lvl2,
+       p.ecsc39.value                                                  AS ec39,
+       p.contracttype.classname                                        AS type,
+       p.startdate.value                                               AS startdate,
+       p.enddate.value                                                 AS enddate,
+       year(p.startdate.value)                                         AS start_year,
+       year(p.enddate.value)                                           AS end_year,
+       CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration,
+       'no'                                                            AS haspubs,
+       0                                                               AS numpubs,
+       0                                                               AS daysforlastpub,
+       0                                                               AS delayedpubs,
+       p.callidentifier.value                                          AS callidentifier,
+       p.code.value                                                    AS code
+FROM ${openaire_db_name}.project p
+WHERE p.datainfo.deletedbyinference = false;
 
 create table ${stats_db_name}.funder as
-select distinct  xpath_string(fund, '//funder/id') as id, xpath_string(fund, '//funder/name') as name, xpath_string(fund, '//funder/shortname') as shortname
+select distinct xpath_string(fund, '//funder/id')        as id,
-from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund
+                xpath_string(fund, '//funder/name')      as name,
+                xpath_string(fund, '//funder/shortname') as shortname
+from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
+
+-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql

@@ -5,27 +5,137 @@
 ----------------------------------------------------
 
 -- Views on temporary tables that should be re-created in the end
-CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
+CREATE OR REPLACE VIEW ${stats_db_name}.result as
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.publication_tmp
+UNION ALL
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.software_tmp
+UNION ALL
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.dataset_tmp
+UNION ALL
+SELECT *, bestlicence AS access_mode
+FROM ${stats_db_name}.otherresearchproduct_tmp;
 
 -- Views on final tables
-CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS
+SELECT *
+FROM ${stats_db_name}.publication_datasources
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_datasources
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_datasources
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_datasources;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS
+SELECT *
+FROM ${stats_db_name}.publication_citations
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_citations
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_citations
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_citations;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS
+SELECT *
+FROM ${stats_db_name}.publication_classifications
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_classifications
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_classifications
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_classifications;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS
+SELECT *
+FROM ${stats_db_name}.publication_concepts
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_concepts
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_concepts
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_concepts;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS
+SELECT *
+FROM ${stats_db_name}.publication_languages
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_languages
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_languages
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_languages;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS
+SELECT *
+FROM ${stats_db_name}.publication_oids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_oids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_oids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_oids;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS
+SELECT *
+FROM ${stats_db_name}.publication_pids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_pids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_pids
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_pids;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
+CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS
+SELECT *
+FROM ${stats_db_name}.publication_topics
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.software_topics
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.dataset_topics
+UNION ALL
+SELECT *
+FROM ${stats_db_name}.otherresearchproduct_topics;
 
-DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
+CREATE TABLE ${stats_db_name}.result_organization AS
-CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization' and r.datainfo.deletedbyinference=false;
+SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
+FROM ${openaire_db_name}.relation r
+WHERE r.reltype = 'resultOrganization'
+  and r.datainfo.deletedbyinference = false;
 
-DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
+CREATE TABLE ${stats_db_name}.result_projects AS
-CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;
+select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend
+FROM ${stats_db_name}.result r
+         JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
+         JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
+
+-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql

@@ -5,54 +5,105 @@
 -- Datasource table/view and Datasource related tables/views
 ------------------------------------------------------------
 ------------------------------------------------------------
-
+CREATE TABLE ${stats_db_name}.datasource_tmp
--- Datasource table creation & update
+(
--------------------------------------
+    `id`               string,
--- Creating and populating temporary datasource table
+    `name`             STRING,
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
+    `type`             STRING,
-CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
+    `dateofvalidation` STRING,
+    `yearofvalidation` string,
+    `harvested`        BOOLEAN,
+    `piwik_id`         INT,
+    `latitude`         STRING,
+    `longitude`        STRING,
+    `websiteurl`       STRING,
+    `compatibility`    STRING
+) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
 
 -- Insert statement that takes into account the piwik_id of the openAIRE graph
 INSERT INTO ${stats_db_name}.datasource_tmp
-SELECT substr(d1.id, 4) AS id, officialname.value AS name, 
+SELECT substr(d1.id, 4)                                          AS id,
-datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d1.dateofvalidation.value,'yyyy') AS yearofvalidation, 
+       officialname.value                                        AS name,
-FALSE AS harvested, 
+       datasourcetype.classname                                  AS type,
-CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id, 
+       dateofvalidation.value                                    AS dateofvalidation,
-d1.latitude.value AS latitude, d1.longitude.value AS longitude, 
+       date_format(d1.dateofvalidation.value, 'yyyy')            AS yearofvalidation,
-d1.websiteurl.value AS websiteurl, d1.openairecompatibility.classid AS compatibility
+       FALSE                                                     AS harvested,
+       CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
+       d1.latitude.value                                         AS latitude,
+       d1.longitude.value                                        AS longitude,
+       d1.websiteurl.value                                       AS websiteurl,
+       d1.openairecompatibility.classid                          AS compatibility
 FROM ${openaire_db_name}.datasource d1
-LEFT OUTER JOIN
+         LEFT OUTER JOIN
-(SELECT id, split(originalidd, '\\:')[1] as piwik_id
+     (SELECT id, split(originalidd, '\\:')[1] as piwik_id
-FROM ${openaire_db_name}.datasource
+      FROM ${openaire_db_name}.datasource
-LATERAL VIEW EXPLODE(originalid) temp AS originalidd
+               LATERAL VIEW EXPLODE(originalid) temp AS originalidd
-WHERE originalidd like "piwik:%") AS d2
+      WHERE originalidd like "piwik:%") AS d2
-ON d1.id = d2.id
+     ON d1.id = d2.id
-WHERE d1.datainfo.deletedbyinference=FALSE;
+WHERE d1.datainfo.deletedbyinference = FALSE;
 
 -- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
 -- Creating a temporary dual table that will be removed after the following insert
-CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
+CREATE TABLE ${stats_db_name}.dual
-INSERT INTO ${stats_db_name}.dual VALUES('X');
+(
-INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`) 
+    dummy CHAR(1)
-SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
+);
+INSERT INTO ${stats_db_name}.dual
+VALUES ('X');
+INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
+                                             `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
+SELECT 'other',
+       'Other',
+       'Repository',
+       NULL,
+       NULL,
+       false,
+       0,
+       NULL,
+       NULL,
+       NULL,
+       'unknown'
+FROM ${stats_db_name}.dual
+WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
 DROP TABLE ${stats_db_name}.dual;
 
-UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
+UPDATE ${stats_db_name}.datasource_tmp
-UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
+SET name='Other'
+WHERE name = 'Unknown Repository';
+UPDATE ${stats_db_name}.datasource_tmp
+SET yearofvalidation=null
+WHERE yearofvalidation = '-1';
 
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
+CREATE TABLE ${stats_db_name}.datasource_languages AS
-CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
+SELECT substr(d.id, 4) AS id, langs.languages AS language
+FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
 
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
+CREATE TABLE ${stats_db_name}.datasource_oids AS
-CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
+SELECT substr(d.id, 4) AS id, oids.ids AS oid
+FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
 
-DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
+CREATE TABLE ${stats_db_name}.datasource_organizations AS
-CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization' and r.datainfo.deletedbyinference=false;
+SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
+FROM ${openaire_db_name}.relation r
+WHERE r.reltype = 'datasourceOrganization'
+  and r.datainfo.deletedbyinference = false;
 
 -- datasource sources:
 -- where the datasource info have been collected from.
-create table if not exists ${stats_db_name}.datasource_sources AS select substr(d.id,4) as id, substr(cf.key, 4) as datasource from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf where d.datainfo.deletedbyinference=false;
+create table if not exists ${stats_db_name}.datasource_sources AS
-
+select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
-CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
+from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
+where d.datainfo.deletedbyinference = false;
 
+CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
+SELECT datasource AS id, id AS result
+FROM ${stats_db_name}.result_datasources;
 
+-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS FOR COLUMNS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql

@@ -3,10 +3,21 @@
 -- Organization table/view and Organization related tables/views
 ----------------------------------------------------------------
 ----------------------------------------------------------------
-DROP TABLE IF EXISTS ${stats_db_name}.organization;
+CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS
-CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
+SELECT substr(o.id, 4)        as id,
-FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
+       o.legalname.value      as name,
+       o.legalshortname.value as legalshortname,
+       o.country.classid      as country
+FROM ${openaire_db_name}.organization o
+WHERE o.datainfo.deletedbyinference = FALSE;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
+CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS
+SELECT organization AS id, id AS datasource
+FROM ${stats_db_name}.datasource_organizations;
 
-CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
+CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS
+SELECT id AS project, organization as id
+FROM ${stats_db_name}.project_organizations;
+
+-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS;
+-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS FOR COLUMNS;

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh

@@ -1,4 +1,4 @@
 #!/usr/bin/env bash
 
 curl --request GET $1/cache/updateCache
-
+sleep 20h

dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml

@@ -17,6 +17,14 @@
             <name>stats_db_shadow_name</name>
             <description>the name of the shadow schema</description>
         </property>
+        <property>
+            <name>monitor_db_name</name>
+            <description>the target monitor db name</description>
+        </property>
+        <property>
+            <name>monitor_db_shadow_name</name>
+            <description>the name of the shadow monitor db</description>
+        </property>
         <property>
             <name>stats_tool_api_url</name>
             <description>The url of the API of the stats tool. Is used to trigger the cache update.</description>
@@ -252,31 +260,6 @@
             <param>stats_db_name=${stats_db_name}</param>
             <param>openaire_db_name=${openaire_db_name}</param>
         </hive2>
-        <ok to="Step17"/>
-        <error to="Kill"/>
-    </action>
-    
-    <action name="Step17">
-        <hive2 xmlns="uri:oozie:hive2-action:0.1">
-            <jdbc-url>${hive_jdbc_url}</jdbc-url>
-            <script>scripts/step17.sql</script>
-			<param>stats_db_name=${stats_db_name}</param>
-			<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
-        </hive2>
-        <ok to="Step18"/>
-        <error to="Kill"/>
-    </action>
-    
-    <action name="Step18">
-        <shell xmlns="uri:oozie:shell-action:0.1">
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <exec>impala-shell.sh</exec>
-            <argument>${stats_db_name}</argument>
-            <argument>step18.sql</argument>
-            <argument>${wf:appPath()}/scripts/step18.sql</argument>
-            <file>impala-shell.sh</file>
-        </shell>
         <ok to="Step19"/>
         <error to="Kill"/>
     </action>
@@ -285,17 +268,31 @@
         <shell xmlns="uri:oozie:shell-action:0.1">
             <job-tracker>${jobTracker}</job-tracker>
             <name-node>${nameNode}</name-node>
-            <exec>impala-shell.sh</exec>
+            <exec>finalizedb.sh</exec>
+            <argument>${stats_db_name}</argument>
             <argument>${stats_db_shadow_name}</argument>
-            <argument>step19.sql</argument>
+            <file>finalizedb.sh</file>
-            <argument>${wf:appPath()}/scripts/step19.sql</argument>
-            <file>impala-shell.sh</file>
         </shell>
-        <ok to="Step20"/>
+        <ok to="step20-createMonitorDB"/>
         <error to="Kill"/>
     </action>
 
-    <action name="Step20">
+    <action name="step20-createMonitorDB">
+        <shell xmlns="uri:oozie:shell-action:0.1">
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <exec>monitor.sh</exec>
+            <argument>${stats_db_name}</argument>
+            <argument>${monitor_db_name}</argument>
+            <argument>${monitor_db_shadow_name}</argument>
+            <argument>${wf:appPath()}/scripts/step20-createMonitorDB.sql</argument>
+            <file>monitor.sh</file>
+        </shell>
+        <ok to="Step21"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Step21">
         <shell xmlns="uri:oozie:shell-action:0.1">
             <job-tracker>${jobTracker}</job-tracker>
             <name-node>${nameNode}</name-node>