From 58dbe71d39f2564eca92ce99f728e2868a982aea Mon Sep 17 00:00:00 2001 From: Sandro La Bruzzo Date: Wed, 20 Mar 2024 17:04:52 +0100 Subject: [PATCH] update crossref mapping to be runnable separately as a single datasource outside doiboost --- .../dhp/schema/oaf/utils/DoiCleaningRule.java | 11 +- .../collection/plugin/oai/OaiIterator.java | 2 +- .../convert_crossref_dump_to_oaf_params.json | 26 + .../dhp/collection/crossref/irish_funder.json | 940 +++ .../crossref/oozie_app/config-default.xml | 44 + .../crossref/oozie_app/workflow.xml | 54 + .../collection/crossref/Crossref2Oaf.scala | 223 +- .../collection/crossref/CrossrefDataset.scala | 106 - .../crossref/GenerateCrossrefDataset.scala | 2 +- .../crossref/SparkMapDumpIntoOAF.scala | 61 + .../dhp/collection/mag/MagUtility.scala | 11 - .../mag/SparkCreateMagDenormalizedTable.scala | 67 +- .../dhp/collection/crossref/issn_pub.json | 849 +++ .../eu/dnetlib/dhp/transform/synonyms.txt | 5897 +++++++++++++---- .../eu/dnetlib/dhp/transform/terms.txt | 3168 ++++++--- .../crossref/CrossrefMappingTest.scala | 41 + .../doiboost/crossref/Crossref2Oaf.scala | 46 +- .../crossref/SparkMapDumpIntoOAF.scala | 1 - .../aggregation/AbstractVocabularyTest.java | 49 +- .../crossref/CrossrefMappingTest.scala | 17 +- 20 files changed, 9357 insertions(+), 2258 deletions(-) create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/convert_crossref_dump_to_oaf_params.json create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/irish_funder.json create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/config-default.xml create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/workflow.xml delete mode 100644 dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/CrossrefDataset.scala create mode 100644 dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/SparkMapDumpIntoOAF.scala create mode 100644 dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/collection/crossref/issn_pub.json create mode 100644 dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/collection/crossref/CrossrefMappingTest.scala diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/DoiCleaningRule.java b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/DoiCleaningRule.java index 396919462..43fb0feda 100644 --- a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/DoiCleaningRule.java +++ b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/DoiCleaningRule.java @@ -5,8 +5,6 @@ import org.apache.commons.lang3.StringUtils; public class DoiCleaningRule { - - public static String clean(final String doi) { return doi .toLowerCase() @@ -15,20 +13,19 @@ public class DoiCleaningRule { .replaceFirst(CleaningFunctions.DOI_PREFIX_REGEX, CleaningFunctions.DOI_PREFIX); } - public static String normalizeDoi(final String input){ + public static String normalizeDoi(final String input) { if (input == null) return null; final String replaced = input - .replaceAll("\\n|\\r|\\t|\\s", "") - .toLowerCase() - .replaceFirst(CleaningFunctions.DOI_PREFIX_REGEX, CleaningFunctions.DOI_PREFIX); + .replaceAll("\\n|\\r|\\t|\\s", "") + .toLowerCase() + .replaceFirst(CleaningFunctions.DOI_PREFIX_REGEX, CleaningFunctions.DOI_PREFIX); if (StringUtils.isEmpty(replaced)) return null; if (!replaced.contains("10.")) return null; - final String ret = replaced.substring(replaced.indexOf("10.")); if (!ret.startsWith(CleaningFunctions.DOI_PREFIX)) diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/oai/OaiIterator.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/oai/OaiIterator.java index bebe5f01d..8f4a9e393 100644 --- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/oai/OaiIterator.java +++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/plugin/oai/OaiIterator.java @@ -165,7 +165,7 @@ public class OaiIterator implements Iterator { } catch (final DocumentException e1) { final String resumptionToken = extractResumptionToken(xml); if (resumptionToken == null) { - report.put(e1.getClass().getName(), e1.getMessage()); + report.put(e1.getClass().getName(), e1.getMessage()); throw new CollectorException("Error parsing cleaned document:\n" + cleaned, e1); } return resumptionToken; diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/convert_crossref_dump_to_oaf_params.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/convert_crossref_dump_to_oaf_params.json new file mode 100644 index 000000000..4c2f22a75 --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/convert_crossref_dump_to_oaf_params.json @@ -0,0 +1,26 @@ +[ + { + "paramName": "m", + "paramLongName": "master", + "paramDescription": "the master name", + "paramRequired": true + }, + { + "paramName": "s", + "paramLongName": "sourcePath", + "paramDescription": "The base path of Crossref DUMP", + "paramRequired": true + }, + { + "paramName": "t", + "paramLongName": "targetPath", + "paramDescription": "The target path", + "paramRequired": false + }, + { + "paramName": "i", + "paramLongName": "isLookupUrl", + "paramDescription": "the Information System Service LookUp URL", + "paramRequired": true + } +] \ No newline at end of file diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/irish_funder.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/irish_funder.json new file mode 100644 index 000000000..15eb1b711 --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/irish_funder.json @@ -0,0 +1,940 @@ +[ + { + "id": "100007630", + "uri": "http://dx.doi.org/10.13039/100007630", + "name": "College of Engineering and Informatics, National University of Ireland, Galway", + "synonym": [] + }, + { + "id": "100007731", + "uri": "http://dx.doi.org/10.13039/100007731", + "name": "Endo International", + "synonym": [] + }, + { + "id": "100008099", + "uri": "http://dx.doi.org/10.13039/100008099", + "name": "Food Safety Authority of Ireland", + "synonym": [] + }, + { + "id": "100008124", + "uri": "http://dx.doi.org/10.13039/100008124", + "name": "Department of Jobs, Enterprise and Innovation", + "synonym": [] + }, + { + "id": "100009098", + "uri": "http://dx.doi.org/10.13039/100009098", + "name": "Department of Foreign Affairs and Trade, Ireland", + "synonym": [] + }, + { + "id": "100009099", + "uri": "http://dx.doi.org/10.13039/100009099", + "name": "Irish Aid", + "synonym": [] + }, + { + "id": "100009770", + "uri": "http://dx.doi.org/10.13039/100009770", + "name": "National University of Ireland", + "synonym": [] + }, + { + "id": "100009985", + "uri": "http://dx.doi.org/10.13039/100009985", + "name": "Parkinson's Association of Ireland", + "synonym": [] + }, + { + "id": "100010399", + "uri": "http://dx.doi.org/10.13039/100010399", + "name": "European Society of Cataract and Refractive Surgeons", + "synonym": [] + }, + { + "id": "100010414", + "uri": "http://dx.doi.org/10.13039/100010414", + "name": "Health Research Board", + "synonym": [ + "501100001590" + ] + }, + { + "id": "100010546", + "uri": "http://dx.doi.org/10.13039/100010546", + "name": "Deparment of Children and Youth Affairs, Ireland", + "synonym": [] + }, + { + "id": "100010993", + "uri": "http://dx.doi.org/10.13039/100010993", + "name": "Irish Nephrology Society", + "synonym": [] + }, + { + "id": "100011062", + "uri": "http://dx.doi.org/10.13039/100011062", + "name": "Asian Spinal Cord Network", + "synonym": [] + }, + { + "id": "100011096", + "uri": "http://dx.doi.org/10.13039/100011096", + "name": "Jazz Pharmaceuticals", + "synonym": [] + }, + { + "id": "100011396", + "uri": "http://dx.doi.org/10.13039/100011396", + "name": "Irish College of General Practitioners", + "synonym": [] + }, + { + "id": "100012734", + "uri": "http://dx.doi.org/10.13039/100012734", + "name": "Department for Culture, Heritage and the Gaeltacht, Ireland", + "synonym": [] + }, + { + "id": "100012754", + "uri": "http://dx.doi.org/10.13039/100012754", + "name": "Horizon Pharma", + "synonym": [] + }, + { + "id": "100012891", + "uri": "http://dx.doi.org/10.13039/100012891", + "name": "Medical Research Charities Group", + "synonym": [] + }, + { + "id": "100012919", + "uri": "http://dx.doi.org/10.13039/100012919", + "name": "Epilepsy Ireland", + "synonym": [] + }, + { + "id": "100012920", + "uri": "http://dx.doi.org/10.13039/100012920", + "name": "GLEN", + "synonym": [] + }, + { + "id": "100012921", + "uri": "http://dx.doi.org/10.13039/100012921", + "name": "Royal College of Surgeons in Ireland", + "synonym": [] + }, + { + "id": "100013029", + "uri": "http://dx.doi.org/10.13039/100013029", + "name": "Iris O'Brien Foundation", + "synonym": [] + }, + { + "id": "100013206", + "uri": "http://dx.doi.org/10.13039/100013206", + "name": "Food Institutional Research Measure", + "synonym": [] + }, + { + "id": "100013381", + "uri": "http://dx.doi.org/10.13039/100013381", + "name": "Irish Phytochemical Food Network", + "synonym": [] + }, + { + "id": "100013433", + "uri": "http://dx.doi.org/10.13039/100013433", + "name": "Transport Infrastructure Ireland", + "synonym": [] + }, + { + "id": "100013461", + "uri": "http://dx.doi.org/10.13039/100013461", + "name": "Arts and Disability Ireland", + "synonym": [] + }, + { + "id": "100013548", + "uri": "http://dx.doi.org/10.13039/100013548", + "name": "Filmbase", + "synonym": [] + }, + { + "id": "100013917", + "uri": "http://dx.doi.org/10.13039/100013917", + "name": "Society for Musicology in Ireland", + "synonym": [] + }, + { + "id": "100014251", + "uri": "http://dx.doi.org/10.13039/100014251", + "name": "Humanities in the European Research Area", + "synonym": [] + }, + { + "id": "100014364", + "uri": "http://dx.doi.org/10.13039/100014364", + "name": "National Children's Research Centre", + "synonym": [] + }, + { + "id": "100014384", + "uri": "http://dx.doi.org/10.13039/100014384", + "name": "Amarin Corporation", + "synonym": [] + }, + { + "id": "100014902", + "uri": "http://dx.doi.org/10.13039/100014902", + "name": "Irish Association for Cancer Research", + "synonym": [] + }, + { + "id": "100015023", + "uri": "http://dx.doi.org/10.13039/100015023", + "name": "Ireland Funds", + "synonym": [] + }, + { + "id": "100015037", + "uri": "http://dx.doi.org/10.13039/100015037", + "name": "Simon Cumbers Media Fund", + "synonym": [] + }, + { + "id": "100015319", + "uri": "http://dx.doi.org/10.13039/100015319", + "name": "Sport Ireland Institute", + "synonym": [] + }, + { + "id": "100015320", + "uri": "http://dx.doi.org/10.13039/100015320", + "name": "Paralympics Ireland", + "synonym": [] + }, + { + "id": "100015442", + "uri": "http://dx.doi.org/10.13039/100015442", + "name": "Global Brain Health Institute", + "synonym": [] + }, + { + "id": "100015776", + "uri": "http://dx.doi.org/10.13039/100015776", + "name": "Health and Social Care Board", + "synonym": [] + }, + { + "id": "100015992", + "uri": "http://dx.doi.org/10.13039/100015992", + "name": "St. Luke's Institute of Cancer Research", + "synonym": [] + }, + { + "id": "100017897", + "uri": "http://dx.doi.org/10.13039/100017897", + "name": "Friedreich\u2019s Ataxia Research Alliance Ireland", + "synonym": [] + }, + { + "id": "100018064", + "uri": "http://dx.doi.org/10.13039/100018064", + "name": "Department of Tourism, Culture, Arts, Gaeltacht, Sport and Media", + "synonym": [] + }, + { + "id": "100018172", + "uri": "http://dx.doi.org/10.13039/100018172", + "name": "Department of the Environment, Climate and Communications", + "synonym": [] + }, + { + "id": "100018175", + "uri": "http://dx.doi.org/10.13039/100018175", + "name": "Dairy Processing Technology Centre", + "synonym": [] + }, + { + "id": "100018270", + "uri": "http://dx.doi.org/10.13039/100018270", + "name": "Health Service Executive", + "synonym": [] + }, + { + "id": "100018529", + "uri": "http://dx.doi.org/10.13039/100018529", + "name": "Alkermes", + "synonym": [] + }, + { + "id": "100018542", + "uri": "http://dx.doi.org/10.13039/100018542", + "name": "Irish Endocrine Society", + "synonym": [] + }, + { + "id": "100018754", + "uri": "http://dx.doi.org/10.13039/100018754", + "name": "An Roinn Sl\u00e1inte", + "synonym": [] + }, + { + "id": "100018998", + "uri": "http://dx.doi.org/10.13039/100018998", + "name": "Irish Research eLibrary", + "synonym": [] + }, + { + "id": "100019428", + "uri": "http://dx.doi.org/10.13039/100019428", + "name": "Nabriva Therapeutics", + "synonym": [] + }, + { + "id": "100019637", + "uri": "http://dx.doi.org/10.13039/100019637", + "name": "Horizon Therapeutics", + "synonym": [] + }, + { + "id": "100020174", + "uri": "http://dx.doi.org/10.13039/100020174", + "name": "Health Research Charities Ireland", + "synonym": [] + }, + { + "id": "100020202", + "uri": "http://dx.doi.org/10.13039/100020202", + "name": "UCD Foundation", + "synonym": [] + }, + { + "id": "100020233", + "uri": "http://dx.doi.org/10.13039/100020233", + "name": "Ireland Canada University Foundation", + "synonym": [] + }, + { + "id": "100022943", + "uri": "http://dx.doi.org/10.13039/100022943", + "name": "National Cancer Registry Ireland", + "synonym": [] + }, + { + "id": "501100001581", + "uri": "http://dx.doi.org/10.13039/501100001581", + "name": "Arts Council of Ireland", + "synonym": [] + }, + { + "id": "501100001582", + "uri": "http://dx.doi.org/10.13039/501100001582", + "name": "Centre for Ageing Research and Development in Ireland", + "synonym": [] + }, + { + "id": "501100001583", + "uri": "http://dx.doi.org/10.13039/501100001583", + "name": "Cystinosis Foundation Ireland", + "synonym": [] + }, + { + "id": "501100001584", + "uri": "http://dx.doi.org/10.13039/501100001584", + "name": "Department of Agriculture, Food and the Marine, Ireland", + "synonym": [] + }, + { + "id": "501100001586", + "uri": "http://dx.doi.org/10.13039/501100001586", + "name": "Department of Education and Skills, Ireland", + "synonym": [] + }, + { + "id": "501100001587", + "uri": "http://dx.doi.org/10.13039/501100001587", + "name": "Economic and Social Research Institute", + "synonym": [] + }, + { + "id": "501100001588", + "uri": "http://dx.doi.org/10.13039/501100001588", + "name": "Enterprise Ireland", + "synonym": [] + }, + { + "id": "501100001589", + "uri": "http://dx.doi.org/10.13039/501100001589", + "name": "Environmental Protection Agency", + "synonym": [] + }, + { + "id": "501100001591", + "uri": "http://dx.doi.org/10.13039/501100001591", + "name": "Heritage Council", + "synonym": [] + }, + { + "id": "501100001592", + "uri": "http://dx.doi.org/10.13039/501100001592", + "name": "Higher Education Authority", + "synonym": [] + }, + { + "id": "501100001593", + "uri": "http://dx.doi.org/10.13039/501100001593", + "name": "Irish Cancer Society", + "synonym": [] + }, + { + "id": "501100001594", + "uri": "http://dx.doi.org/10.13039/501100001594", + "name": "Irish Heart Foundation", + "synonym": [] + }, + { + "id": "501100001595", + "uri": "http://dx.doi.org/10.13039/501100001595", + "name": "Irish Hospice Foundation", + "synonym": [] + }, + { + "id": "501100001596", + "uri": "http://dx.doi.org/10.13039/501100001596", + "name": "Irish Research Council for Science, Engineering and Technology", + "synonym": [] + }, + { + "id": "501100001597", + "uri": "http://dx.doi.org/10.13039/501100001597", + "name": "Irish Research Council for the Humanities and Social Sciences", + "synonym": [] + }, + { + "id": "501100001598", + "uri": "http://dx.doi.org/10.13039/501100001598", + "name": "Mental Health Commission", + "synonym": [] + }, + { + "id": "501100001600", + "uri": "http://dx.doi.org/10.13039/501100001600", + "name": "Research and Education Foundation, Sligo General Hospital", + "synonym": [] + }, + { + "id": "501100001601", + "uri": "http://dx.doi.org/10.13039/501100001601", + "name": "Royal Irish Academy", + "synonym": [] + }, + { + "id": "501100001603", + "uri": "http://dx.doi.org/10.13039/501100001603", + "name": "Sustainable Energy Authority of Ireland", + "synonym": [] + }, + { + "id": "501100001604", + "uri": "http://dx.doi.org/10.13039/501100001604", + "name": "Teagasc", + "synonym": [] + }, + { + "id": "501100001627", + "uri": "http://dx.doi.org/10.13039/501100001627", + "name": "Marine Institute", + "synonym": [] + }, + { + "id": "501100001628", + "uri": "http://dx.doi.org/10.13039/501100001628", + "name": "Central Remedial Clinic", + "synonym": [] + }, + { + "id": "501100001629", + "uri": "http://dx.doi.org/10.13039/501100001629", + "name": "Royal Dublin Society", + "synonym": [] + }, + { + "id": "501100001630", + "uri": "http://dx.doi.org/10.13039/501100001630", + "name": "Dublin Institute for Advanced Studies", + "synonym": [] + }, + { + "id": "501100001631", + "uri": "http://dx.doi.org/10.13039/501100001631", + "name": "University College Dublin", + "synonym": [] + }, + { + "id": "501100001633", + "uri": "http://dx.doi.org/10.13039/501100001633", + "name": "National University of Ireland, Maynooth", + "synonym": [] + }, + { + "id": "501100001634", + "uri": "http://dx.doi.org/10.13039/501100001634", + "name": "University of Galway", + "synonym": [] + }, + { + "id": "501100001635", + "uri": "http://dx.doi.org/10.13039/501100001635", + "name": "University of Limerick", + "synonym": [] + }, + { + "id": "501100001636", + "uri": "http://dx.doi.org/10.13039/501100001636", + "name": "University College Cork", + "synonym": [] + }, + { + "id": "501100001637", + "uri": "http://dx.doi.org/10.13039/501100001637", + "name": "Trinity College Dublin", + "synonym": [] + }, + { + "id": "501100001638", + "uri": "http://dx.doi.org/10.13039/501100001638", + "name": "Dublin City University", + "synonym": [] + }, + { + "id": "501100002081", + "uri": "http://dx.doi.org/10.13039/501100002081", + "name": "Irish Research Council", + "synonym": [] + }, + { + "id": "501100002736", + "uri": "http://dx.doi.org/10.13039/501100002736", + "name": "Covidien", + "synonym": [] + }, + { + "id": "501100002755", + "uri": "http://dx.doi.org/10.13039/501100002755", + "name": "Brennan and Company", + "synonym": [] + }, + { + "id": "501100002919", + "uri": "http://dx.doi.org/10.13039/501100002919", + "name": "Cork Institute of Technology", + "synonym": [] + }, + { + "id": "501100002959", + "uri": "http://dx.doi.org/10.13039/501100002959", + "name": "Dublin City Council", + "synonym": [] + }, + { + "id": "501100003036", + "uri": "http://dx.doi.org/10.13039/501100003036", + "name": "Perrigo Company Charitable Foundation", + "synonym": [] + }, + { + "id": "501100003037", + "uri": "http://dx.doi.org/10.13039/501100003037", + "name": "Elan", + "synonym": [] + }, + { + "id": "501100003496", + "uri": "http://dx.doi.org/10.13039/501100003496", + "name": "HeyStaks Technologies", + "synonym": [] + }, + { + "id": "501100003553", + "uri": "http://dx.doi.org/10.13039/501100003553", + "name": "Gaelic Athletic Association", + "synonym": [] + }, + { + "id": "501100003840", + "uri": "http://dx.doi.org/10.13039/501100003840", + "name": "Irish Institute of Clinical Neuroscience", + "synonym": [] + }, + { + "id": "501100003956", + "uri": "http://dx.doi.org/10.13039/501100003956", + "name": "Aspect Medical Systems", + "synonym": [] + }, + { + "id": "501100004162", + "uri": "http://dx.doi.org/10.13039/501100004162", + "name": "Meath Foundation", + "synonym": [] + }, + { + "id": "501100004210", + "uri": "http://dx.doi.org/10.13039/501100004210", + "name": "Our Lady's Children's Hospital, Crumlin", + "synonym": [] + }, + { + "id": "501100004321", + "uri": "http://dx.doi.org/10.13039/501100004321", + "name": "Shire", + "synonym": [] + }, + { + "id": "501100004981", + "uri": "http://dx.doi.org/10.13039/501100004981", + "name": "Athlone Institute of Technology", + "synonym": [] + }, + { + "id": "501100006518", + "uri": "http://dx.doi.org/10.13039/501100006518", + "name": "Department of Communications, Energy and Natural Resources, Ireland", + "synonym": [] + }, + { + "id": "501100006553", + "uri": "http://dx.doi.org/10.13039/501100006553", + "name": "Collaborative Centre for Applied Nanotechnology", + "synonym": [] + }, + { + "id": "501100006759", + "uri": "http://dx.doi.org/10.13039/501100006759", + "name": "CLARITY Centre for Sensor Web Technologies", + "synonym": [] + }, + { + "id": "501100009246", + "uri": "http://dx.doi.org/10.13039/501100009246", + "name": "Technological University Dublin", + "synonym": [] + }, + { + "id": "501100009269", + "uri": "http://dx.doi.org/10.13039/501100009269", + "name": "Programme of Competitive Forestry Research for Development", + "synonym": [] + }, + { + "id": "501100009315", + "uri": "http://dx.doi.org/10.13039/501100009315", + "name": "Cystinosis Ireland", + "synonym": [] + }, + { + "id": "501100010808", + "uri": "http://dx.doi.org/10.13039/501100010808", + "name": "Geological Survey of Ireland", + "synonym": [] + }, + { + "id": "501100011030", + "uri": "http://dx.doi.org/10.13039/501100011030", + "name": "Alimentary Glycoscience Research Cluster", + "synonym": [] + }, + { + "id": "501100011031", + "uri": "http://dx.doi.org/10.13039/501100011031", + "name": "Alimentary Health", + "synonym": [] + }, + { + "id": "501100011103", + "uri": "http://dx.doi.org/10.13039/501100011103", + "name": "Rann\u00eds", + "synonym": [] + }, + { + "id": "501100012354", + "uri": "http://dx.doi.org/10.13039/501100012354", + "name": "Inland Fisheries Ireland", + "synonym": [] + }, + { + "id": "501100014384", + "uri": "http://dx.doi.org/10.13039/501100014384", + "name": "X-Bolt Orthopaedics", + "synonym": [] + }, + { + "id": "501100014710", + "uri": "http://dx.doi.org/10.13039/501100014710", + "name": "PrecisionBiotics Group", + "synonym": [] + }, + { + "id": "501100014827", + "uri": "http://dx.doi.org/10.13039/501100014827", + "name": "Dormant Accounts Fund", + "synonym": [] + }, + { + "id": "501100016041", + "uri": "http://dx.doi.org/10.13039/501100016041", + "name": "St Vincents Anaesthesia Foundation", + "synonym": [] + }, + { + "id": "501100017501", + "uri": "http://dx.doi.org/10.13039/501100017501", + "name": "FotoNation", + "synonym": [] + }, + { + "id": "501100018641", + "uri": "http://dx.doi.org/10.13039/501100018641", + "name": "Dairy Research Ireland", + "synonym": [] + }, + { + "id": "501100018839", + "uri": "http://dx.doi.org/10.13039/501100018839", + "name": "Irish Centre for High-End Computing", + "synonym": [] + }, + { + "id": "501100019905", + "uri": "http://dx.doi.org/10.13039/501100019905", + "name": "Galway University Foundation", + "synonym": [] + }, + { + "id": "501100020036", + "uri": "http://dx.doi.org/10.13039/501100020036", + "name": "Dystonia Ireland", + "synonym": [] + }, + { + "id": "501100020221", + "uri": "http://dx.doi.org/10.13039/501100020221", + "name": "Irish Motor Neurone Disease Association", + "synonym": [] + }, + { + "id": "501100020270", + "uri": "http://dx.doi.org/10.13039/501100020270", + "name": "Advanced Materials and Bioengineering Research", + "synonym": [] + }, + { + "id": "501100020403", + "uri": "http://dx.doi.org/10.13039/501100020403", + "name": "Irish Composites Centre", + "synonym": [] + }, + { + "id": "501100020425", + "uri": "http://dx.doi.org/10.13039/501100020425", + "name": "Irish Thoracic Society", + "synonym": [] + }, + { + "id": "501100021102", + "uri": "http://dx.doi.org/10.13039/501100021102", + "name": "Waterford Institute of Technology", + "synonym": [] + }, + { + "id": "501100021110", + "uri": "http://dx.doi.org/10.13039/501100021110", + "name": "Irish MPS Society", + "synonym": [] + }, + { + "id": "501100021525", + "uri": "http://dx.doi.org/10.13039/501100021525", + "name": "Insight SFI Research Centre for Data Analytics", + "synonym": [] + }, + { + "id": "501100021694", + "uri": "http://dx.doi.org/10.13039/501100021694", + "name": "Elan Pharma International", + "synonym": [] + }, + { + "id": "501100021838", + "uri": "http://dx.doi.org/10.13039/501100021838", + "name": "Royal College of Physicians of Ireland", + "synonym": [] + }, + { + "id": "501100022542", + "uri": "http://dx.doi.org/10.13039/501100022542", + "name": "Breakthrough Cancer Research", + "synonym": [] + }, + { + "id": "501100022610", + "uri": "http://dx.doi.org/10.13039/501100022610", + "name": "Breast Cancer Ireland", + "synonym": [] + }, + { + "id": "501100022728", + "uri": "http://dx.doi.org/10.13039/501100022728", + "name": "Munster Technological University", + "synonym": [] + }, + { + "id": "501100022729", + "uri": "http://dx.doi.org/10.13039/501100022729", + "name": "Institute of Technology, Tralee", + "synonym": [] + }, + { + "id": "501100023273", + "uri": "http://dx.doi.org/10.13039/501100023273", + "name": "HRB Clinical Research Facility Galway", + "synonym": [] + }, + { + "id": "501100023378", + "uri": "http://dx.doi.org/10.13039/501100023378", + "name": "Lauritzson Foundation", + "synonym": [] + }, + { + "id": "501100023551", + "uri": "http://dx.doi.org/10.13039/501100023551", + "name": "Cystic Fibrosis Ireland", + "synonym": [] + }, + { + "id": "501100023970", + "uri": "http://dx.doi.org/10.13039/501100023970", + "name": "Tyndall National Institute", + "synonym": [] + }, + { + "id": "501100024094", + "uri": "http://dx.doi.org/10.13039/501100024094", + "name": "Raidi\u00f3 Teilif\u00eds \u00c9ireann", + "synonym": [] + }, + { + "id": "501100024242", + "uri": "http://dx.doi.org/10.13039/501100024242", + "name": "Synthesis and Solid State Pharmaceutical Centre", + "synonym": [] + }, + { + "id": "501100024313", + "uri": "http://dx.doi.org/10.13039/501100024313", + "name": "Irish Rugby Football Union", + "synonym": [] + }, + { + "id": "100007490", + "uri": "http://dx.doi.org/10.13039/100007490", + "name": "Bausch and Lomb Ireland", + "synonym": [] + }, + { + "id": "100007819", + "uri": "http://dx.doi.org/10.13039/100007819", + "name": "Allergan", + "synonym": [] + }, + { + "id": "100010547", + "uri": "http://dx.doi.org/10.13039/100010547", + "name": "Irish Youth Justice Service", + "synonym": [] + }, + { + "id": "100012733", + "uri": "http://dx.doi.org/10.13039/100012733", + "name": "National Parks and Wildlife Service", + "synonym": [] + }, + { + "id": "100015278", + "uri": "http://dx.doi.org/10.13039/100015278", + "name": "Pfizer Healthcare Ireland", + "synonym": [] + }, + { + "id": "100017144", + "uri": "http://dx.doi.org/10.13039/100017144", + "name": "Shell E and P Ireland", + "synonym": [] + }, + { + "id": "100022895", + "uri": "http://dx.doi.org/10.13039/100022895", + "name": "Health Research Institute, University of Limerick", + "synonym": [] + }, + { + "id": "501100001599", + "uri": "http://dx.doi.org/10.13039/501100001599", + "name": "National Council for Forest Research and Development", + "synonym": [] + }, + { + "id": "501100006554", + "uri": "http://dx.doi.org/10.13039/501100006554", + "name": "IDA Ireland", + "synonym": [] + }, + { + "id": "501100011626", + "uri": "http://dx.doi.org/10.13039/501100011626", + "name": "Energy Policy Research Centre, Economic and Social Research Institute", + "synonym": [] + }, + { + "id": "501100014531", + "uri": "http://dx.doi.org/10.13039/501100014531", + "name": "Physical Education and Sport Sciences Department, University of Limerick", + "synonym": [] + }, + { + "id": "501100014745", + "uri": "http://dx.doi.org/10.13039/501100014745", + "name": "APC Microbiome Institute", + "synonym": [] + }, + { + "id": "501100014826", + "uri": "http://dx.doi.org/10.13039/501100014826", + "name": "ADAPT - Centre for Digital Content Technology", + "synonym": [] + }, + { + "id": "501100020570", + "uri": "http://dx.doi.org/10.13039/501100020570", + "name": "College of Medicine, Nursing and Health Sciences, National University of Ireland, Galway", + "synonym": [] + }, + { + "id": "501100020871", + "uri": "http://dx.doi.org/10.13039/501100020871", + "name": "Bernal Institute, University of Limerick", + "synonym": [] + }, + { + "id": "501100023852", + "uri": "http://dx.doi.org/10.13039/501100023852", + "name": "Moore Institute for Research in the Humanities and Social Studies, University of Galway", + "synonym": [] + } +] \ No newline at end of file diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/config-default.xml new file mode 100644 index 000000000..df7723bb3 --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/config-default.xml @@ -0,0 +1,44 @@ + + + jobTracker + yarnRM + + + nameNode + hdfs://nameservice1 + + + oozie.use.system.libpath + true + + + oozie.action.sharelib.for.spark + spark2 + + + + oozie.launcher.mapreduce.user.classpath.first + true + + + + spark2ExtraListeners + com.cloudera.spark.lineage.NavigatorAppListener + + + + spark2SqlQueryExecutionListeners + com.cloudera.spark.lineage.NavigatorQueryListener + + + spark2YarnHistoryServerAddress + http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089 + + + spark2EventLogDir + /user/spark/spark2ApplicationHistory + + + + + \ No newline at end of file diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/workflow.xml new file mode 100644 index 000000000..8ec98810f --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/collection/crossref/oozie_app/workflow.xml @@ -0,0 +1,54 @@ + + + + sourcePath + The base path of MAG DUMP CSV Tables + + + targetPath + The base path of MAG DUMP CSV Tables + + + isLookupUrl + The Information service Lookup URL + + + + + + + Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] + + + + + + + + yarn + cluster + Crossref TO OAF + eu.dnetlib.dhp.collection.crossref.SparkMapDumpIntoOAF + dhp-aggregation-${projectVersion}.jar + + --executor-memory=${sparkExecutorMemory} + --executor-cores=${sparkExecutorCores} + --driver-memory=${sparkDriverMemory} + --conf spark.executor.memoryOverhead=2g + --conf spark.sql.shuffle.partitions=3000 + --conf spark.extraListeners=${spark2ExtraListeners} + --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners} + --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress} + --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir} + + --sourcePath${sourcePath} + --targetPath${targetPath} + --isLookupUrl${isLookupUrl} + --masteryarn + + + + + + + \ No newline at end of file diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/Crossref2Oaf.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/Crossref2Oaf.scala index 6e278ef73..f8e1fdc54 100644 --- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/Crossref2Oaf.scala +++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/Crossref2Oaf.scala @@ -1,10 +1,17 @@ package eu.dnetlib.dhp.collection.crossref +import com.fasterxml.jackson.databind.ObjectMapper import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup import eu.dnetlib.dhp.schema.common.ModelConstants import eu.dnetlib.dhp.schema.oaf._ import eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.{field, qualifier, structuredProperty, subject} -import eu.dnetlib.dhp.schema.oaf.utils.{DoiCleaningRule, GraphCleaningFunctions, IdentifierFactory, OafMapperUtils, PidType} +import eu.dnetlib.dhp.schema.oaf.utils.{ + DoiCleaningRule, + GraphCleaningFunctions, + IdentifierFactory, + OafMapperUtils, + PidType +} import eu.dnetlib.dhp.utils.DHPUtils import org.apache.commons.lang.StringUtils import org.json4s @@ -37,18 +44,33 @@ case class funderInfo(id: String, uri: String, name: String, synonym: List[Strin case class mappingFunder(name: String, DOI: Option[String], award: Option[List[String]]) {} +case class CrossrefResult(oafType: String, body: String) {} + case object Crossref2Oaf { val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass) + val mapper = new ObjectMapper val irishFunder: List[funderInfo] = { val s = Source - .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/crossref/irish_funder.json")) + .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/collection/crossref/irish_funder.json")) .mkString implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats lazy val json: org.json4s.JValue = parse(s) json.extract[List[funderInfo]] } + val invalidName = List( + ",", + "none none", + "none, none", + "none &na;", + "(:null)", + "test test test", + "test test", + "test", + "&na; &na;" + ) + def getIrishId(doi: String): Option[String] = { val id = doi.split("/").last irishFunder @@ -64,8 +86,9 @@ case object Crossref2Oaf { cf } + def generateDataInfo(): DataInfo = { - generateDataInfo("0.9") + generateDataInfo("0.91") } def generateDataInfo(trust: String): DataInfo = { @@ -84,6 +107,7 @@ case object Crossref2Oaf { ) di } + def getOpenAccessQualifier(): AccessRight = { OafMapperUtils.accessRight( @@ -102,6 +126,7 @@ case object Crossref2Oaf { ModelConstants.DNET_ACCESS_MODES ) } + def getUnknownQualifier(): AccessRight = { OafMapperUtils.accessRight( ModelConstants.UNKNOWN, @@ -138,16 +163,16 @@ case object Crossref2Oaf { //CC licenses if ( license.startsWith("cc") || - license.startsWith("http://creativecommons.org/licenses") || - license.startsWith("https://creativecommons.org/licenses") || + license.startsWith("http://creativecommons.org/licenses") || + license.startsWith("https://creativecommons.org/licenses") || - //ACS Publications Author choice licenses (considered OPEN also by Unpaywall) - license.equals("http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html") || - license.equals("http://pubs.acs.org/page/policy/authorchoice_termsofuse.html") || - license.equals("http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html") || + //ACS Publications Author choice licenses (considered OPEN also by Unpaywall) + license.equals("http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html") || + license.equals("http://pubs.acs.org/page/policy/authorchoice_termsofuse.html") || + license.equals("http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html") || - //APA (considered OPEN also by Unpaywall) - license.equals("http://www.apa.org/pubs/journals/resources/open-access.aspx") + //APA (considered OPEN also by Unpaywall) + license.equals("http://www.apa.org/pubs/journals/resources/open-access.aspx") ) { val oaq: AccessRight = getOpenAccessQualifier() @@ -197,23 +222,92 @@ case object Crossref2Oaf { } + def isValidAuthorName(fullName: String): Boolean = { + if (fullName == null || fullName.isEmpty) + return false + if (invalidName.contains(fullName.toLowerCase.trim)) + return false + true + } + def filterResult(publication: Result): Boolean = { - def mappingResult(result: Result, json: JValue, instanceType:Qualifier, originalType: String): Result = { + //Case empty publication + if (publication == null) + return false + if (publication.getId == null || publication.getId.isEmpty) + return false + + //Case publication with no title + if (publication.getTitle == null || publication.getTitle.size == 0) + return false + + val s = publication.getTitle.asScala.count(p => + p.getValue != null + && p.getValue.nonEmpty && !p.getValue.equalsIgnoreCase("[NO TITLE AVAILABLE]") + ) + + if (s == 0) + return false + + // fixes #4360 (test publisher) + val publisher = + if (publication.getPublisher != null) publication.getPublisher.getValue else null + + if ( + publisher != null && (publisher.equalsIgnoreCase("Test accounts") || publisher + .equalsIgnoreCase("CrossRef Test Account")) + ) { + return false; + } + + //RELAXED this constraint + //Publication with no Author + if (publication.getAuthor == null || publication.getAuthor.size() == 0) + return true + + //filter invalid author + val authors = publication.getAuthor.asScala.map(s => { + if (s.getFullname.nonEmpty) { + s.getFullname + } else + s"${s.getName} ${s.getSurname}" + }) + + val c = authors.count(isValidAuthorName) + if (c == 0) + return false + + // fixes #4368 + if ( + authors.count(s => s.equalsIgnoreCase("Addie Jackson")) > 0 && "Elsevier BV".equalsIgnoreCase( + publication.getPublisher.getValue + ) + ) + return false + + true + } + + def mappingResult(result: Result, json: JValue, instanceType: Qualifier, originalType: String): Result = { implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats //MAPPING Crossref DOI into PID val doi: String = DoiCleaningRule.normalizeDoi((json \ "DOI").extract[String]) - result.setPid(List(structuredProperty( - doi, - qualifier( - PidType.doi.toString, - PidType.doi.toString, - ModelConstants.DNET_PID_TYPES, - ModelConstants.DNET_PID_TYPES - ), - null - )).asJava) + result.setPid( + List( + structuredProperty( + doi, + qualifier( + PidType.doi.toString, + PidType.doi.toString, + ModelConstants.DNET_PID_TYPES, + ModelConstants.DNET_PID_TYPES + ), + null + ) + ).asJava + ) //MAPPING Crossref DOI into OriginalId //and Other Original Identifier of dataset like clinical-trial-number @@ -251,7 +345,9 @@ case object Crossref2Oaf { val subtitles = for { JString(title) <- json \ "subtitle" if title.nonEmpty } yield structuredProperty( title, - ModelConstants.SUBTITLE_QUALIFIER, null) + ModelConstants.SUBTITLE_QUALIFIER, + null + ) result.setTitle((mainTitles ::: originalTitles ::: shortTitles ::: subtitles).asJava) // DESCRIPTION @@ -302,9 +398,9 @@ case object Crossref2Oaf { (json \ "issued" \ "date-parts").extract[List[List[Int]]] ) if (StringUtils.isNotBlank(issuedDate)) { - result.setDateofacceptance(field(issuedDate,null)) + result.setDateofacceptance(field(issuedDate, null)) } else { - result.setDateofacceptance(field(createdDate.getValue,null)) + result.setDateofacceptance(field(createdDate.getValue, null)) } result.setRelevantdate( List(createdDate, postedDate, acceptedDate, publishedOnlineDate, publishedPrintDate) @@ -317,7 +413,7 @@ case object Crossref2Oaf { if (subjectList.nonEmpty) { result.setSubject( - subjectList.map(s => subject(s,ModelConstants.SUBTITLE_QUALIFIER,null)).asJava + subjectList.map(s => subject(s, ModelConstants.SUBTITLE_QUALIFIER, null)).asJava ) } @@ -339,7 +435,7 @@ case object Crossref2Oaf { JObject(license) <- json \ "license" JField("URL", JString(lic)) <- license JField("content-version", JString(content_version)) <- license - } yield (field[String](lic,null), content_version) + } yield (field[String](lic, null), content_version) val l = license.filter(d => StringUtils.isNotBlank(d._1.getValue)) if (l.nonEmpty) { if (l exists (d => d._2.equals("vor"))) { @@ -382,9 +478,9 @@ case object Crossref2Oaf { instance.setCollectedfrom(createCrossrefCollectedFrom()) if (StringUtils.isNotBlank(issuedDate)) { - instance.setDateofacceptance(field(issuedDate,null)) + instance.setDateofacceptance(field(issuedDate, null)) } else { - instance.setDateofacceptance(field(createdDate.getValue,null)) + instance.setDateofacceptance(field(createdDate.getValue, null)) } val s: List[String] = List("https://doi.org/" + doi) // val links: List[String] = ((for {JString(url) <- json \ "link" \ "URL"} yield url) ::: List(s)).filter(p => p != null && p.toLowerCase().contains(doi.toLowerCase())).distinct @@ -415,6 +511,7 @@ case object Crossref2Oaf { else result } + def generateIdentifier(oaf: Result, doi: String): String = { val id = DHPUtils.md5(doi.toLowerCase) s"50|doiboost____|$id" @@ -431,7 +528,12 @@ case object Crossref2Oaf { List( structuredProperty( orcid, - qualifier( ModelConstants.ORCID_PENDING, ModelConstants.ORCID_PENDING, ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES), + qualifier( + ModelConstants.ORCID_PENDING, + ModelConstants.ORCID_PENDING, + ModelConstants.DNET_PID_TYPES, + ModelConstants.DNET_PID_TYPES + ), generateDataInfo() ) ).asJava @@ -441,22 +543,22 @@ case object Crossref2Oaf { } /** * - * Use the vocabulary dnet:publication_resource to find a synonym to one of these terms and get the instance.type. - * Using the dnet:result_typologies vocabulary, we look up the instance.type synonym - * to generate one of the following main entities: - * - publication - * - dataset - * - software - * - otherresearchproduct - * - * @param resourceType - * @param vocabularies - * @return - */ + * Use the vocabulary dnet:publication_resource to find a synonym to one of these terms and get the instance.type. + * Using the dnet:result_typologies vocabulary, we look up the instance.type synonym + * to generate one of the following main entities: + * - publication + * - dataset + * - software + * - otherresearchproduct + * + * @param resourceType + * @param vocabularies + * @return + */ def getTypeQualifier( - resourceType: String, - vocabularies: VocabularyGroup - ): (Qualifier, Qualifier, String) = { + resourceType: String, + vocabularies: VocabularyGroup + ): (Qualifier, Qualifier, String) = { if (resourceType != null && resourceType.nonEmpty) { val typeQualifier = vocabularies.getSynonymAsQualifier(ModelConstants.DNET_PUBLICATION_RESOURCE, resourceType) @@ -473,17 +575,16 @@ case object Crossref2Oaf { null } - def convert(input: String, vocabularies: VocabularyGroup): List[Oaf] = { + def convert(input: String, vocabularies: VocabularyGroup): List[CrossrefResult] = { implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats lazy val json: json4s.JValue = parse(input) - var resultList: List[Oaf] = List() + var resultList: List[CrossrefResult] = List() val objectType = (json \ "type").extractOrElse[String](null) - val objectSubType = (json \ "subtype").extractOrElse[String](null) if (objectType == null) return resultList - val typology =getTypeQualifier(objectType, vocabularies) + val typology = getTypeQualifier(objectType, vocabularies) if (typology == null) return List() @@ -507,7 +608,7 @@ case object Crossref2Oaf { createCrossrefCollectedFrom(), result.getDataInfo, result.getLastupdatetimestamp - ) + ).map(s => CrossrefResult(s.getClass.getSimpleName, mapper.writeValueAsString(s))) } result match { @@ -522,10 +623,15 @@ case object Crossref2Oaf { if (doisReference != null && doisReference.nonEmpty) { val citation_relations: List[Relation] = generateCitationRelations(doisReference, result) - resultList = resultList ::: citation_relations + resultList = resultList ::: citation_relations.map(s => + CrossrefResult(s.getClass.getSimpleName, mapper.writeValueAsString(s)) + ) } - resultList = resultList ::: List(result) - resultList + if (!filterResult(result)) + List() + else + resultList ::: List(result).map(s => CrossrefResult(s.getClass.getSimpleName, mapper.writeValueAsString(s))) + } private def createCiteRelation(source: Result, targetPid: String, targetPidType: String): List[Relation] = { @@ -752,10 +858,10 @@ case object Crossref2Oaf { val source = s"${containerTitles.head} ISBN: ${ISBN.head}" if (publication.getSource != null) { val l: List[Field[String]] = publication.getSource.asScala.toList - val ll: List[Field[String]] = l ::: List(field(source,null)) + val ll: List[Field[String]] = l ::: List(field(source, null)) publication.setSource(ll.asJava) } else - publication.setSource(List(field(source,null)).asJava) + publication.setSource(List(field(source, null)).asJava) } } else { // Mapping Journal @@ -823,7 +929,7 @@ case object Crossref2Oaf { ): StructuredProperty = { val dp = extractDate(dt, datePart) if (StringUtils.isNotBlank(dp)) - return structuredProperty(dp, qualifier(classId,classId, schemeId, schemeId),null) + return structuredProperty(dp, qualifier(classId, classId, schemeId, schemeId), null) null } @@ -836,12 +942,11 @@ case object Crossref2Oaf { val item = new Dataset item.setResourcetype(objectType) return item - } - else if (objectType.getClassid.equalsIgnoreCase("software")){ + } else if (objectType.getClassid.equalsIgnoreCase("software")) { val item = new Software item.setResourcetype(objectType) return item - }else if (objectType.getClassid.equalsIgnoreCase("OtherResearchProduct")){ + } else if (objectType.getClassid.equalsIgnoreCase("OtherResearchProduct")) { val item = new OtherResearchProduct item.setResourcetype(objectType) return item diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/CrossrefDataset.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/CrossrefDataset.scala deleted file mode 100644 index f93acc599..000000000 --- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/CrossrefDataset.scala +++ /dev/null @@ -1,106 +0,0 @@ -package eu.dnetlib.dhp.collection.crossref - -import eu.dnetlib.dhp.application.ArgumentApplicationParser -import org.apache.commons.io.IOUtils -import org.apache.hadoop.io.{IntWritable, Text} -import org.apache.spark.SparkConf -import org.apache.spark.sql.expressions.Aggregator -import org.apache.spark.sql.{Dataset, Encoder, SaveMode, SparkSession} -import org.json4s -import org.json4s.DefaultFormats -import org.json4s.jackson.JsonMethods.parse -import org.slf4j.{Logger, LoggerFactory} - -object CrossrefDataset { - - val logger: Logger = LoggerFactory.getLogger(CrossrefDataset.getClass) - - def to_item(input: String): CrossrefDT = { - - implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats - lazy val json: json4s.JValue = parse(input) - val ts: Long = (json \ "indexed" \ "timestamp").extract[Long] - val doi: String = DoiBoostMappingUtil.normalizeDoi((json \ "DOI").extract[String]) - CrossrefDT(doi, input, ts) - - } - - def main(args: Array[String]): Unit = { - - val conf: SparkConf = new SparkConf() - val parser = new ArgumentApplicationParser( - IOUtils.toString( - CrossrefDataset.getClass.getResourceAsStream( - "/eu/dnetlib/dhp/doiboost/crossref_to_dataset_params.json" - ) - ) - ) - parser.parseArgument(args) - val spark: SparkSession = - SparkSession - .builder() - .config(conf) - .appName(CrossrefDataset.getClass.getSimpleName) - .master(parser.get("master")) - .getOrCreate() - import spark.implicits._ - - val crossrefAggregator = new Aggregator[CrossrefDT, CrossrefDT, CrossrefDT] with Serializable { - - override def zero: CrossrefDT = null - - override def reduce(b: CrossrefDT, a: CrossrefDT): CrossrefDT = { - if (b == null) - return a - if (a == null) - return b - - if (a.timestamp > b.timestamp) { - return a - } - b - } - - override def merge(a: CrossrefDT, b: CrossrefDT): CrossrefDT = { - if (b == null) - return a - if (a == null) - return b - - if (a.timestamp > b.timestamp) { - return a - } - b - } - - override def bufferEncoder: Encoder[CrossrefDT] = implicitly[Encoder[CrossrefDT]] - - override def outputEncoder: Encoder[CrossrefDT] = implicitly[Encoder[CrossrefDT]] - - override def finish(reduction: CrossrefDT): CrossrefDT = reduction - } - - val workingPath: String = parser.get("workingPath") - - val main_ds: Dataset[CrossrefDT] = spark.read.load(s"$workingPath/crossref_ds").as[CrossrefDT] - - val update = - spark.createDataset( - spark.sparkContext - .sequenceFile(s"$workingPath/index_update", classOf[IntWritable], classOf[Text]) - .map(i => CrossrefImporter.decompressBlob(i._2.toString)) - .map(i => to_item(i)) - ) - - main_ds - .union(update) - .groupByKey(_.doi) - .agg(crossrefAggregator.toColumn) - .map(s => s._2) - .write - .mode(SaveMode.Overwrite) - .save(s"$workingPath/crossref_ds_updated") - - } - -} diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/GenerateCrossrefDataset.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/GenerateCrossrefDataset.scala index c1deddb02..45beb5b55 100644 --- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/GenerateCrossrefDataset.scala +++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/GenerateCrossrefDataset.scala @@ -61,6 +61,6 @@ object GenerateCrossrefDataset { .write .mode(SaveMode.Overwrite) .save(targetPath) - } + } } diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/SparkMapDumpIntoOAF.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/SparkMapDumpIntoOAF.scala new file mode 100644 index 000000000..52e73fb9c --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/crossref/SparkMapDumpIntoOAF.scala @@ -0,0 +1,61 @@ +package eu.dnetlib.dhp.collection.crossref + +import eu.dnetlib.dhp.application.AbstractScalaApplication +import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup +import eu.dnetlib.dhp.schema.oaf.{Oaf, Publication, Dataset => OafDataset} +import eu.dnetlib.dhp.utils.ISLookupClientFactory +import org.apache.spark.sql._ +import org.slf4j.{Logger, LoggerFactory} + +class SparkMapDumpIntoOAF(propertyPath: String, args: Array[String], log: Logger) + extends AbstractScalaApplication(propertyPath, args, log: Logger) { + + /** Here all the spark applications runs this method + * where the whole logic of the spark node is defined + */ + override def run(): Unit = { + val sourcePath = parser.get("sourcePath") + log.info("sourcePath: {}", sourcePath) + val targetPath = parser.get("targetPath") + log.info("targetPath: {}", targetPath) + val isLookupUrl: String = parser.get("isLookupUrl") + log.info("isLookupUrl: {}", isLookupUrl) + val isLookupService = ISLookupClientFactory.getLookUpService(isLookupUrl) + val vocabularies = VocabularyGroup.loadVocsFromIS(isLookupService) + require(vocabularies != null) + transformCrossref(spark, sourcePath, targetPath, vocabularies) + + } + + def transformCrossref( + spark: SparkSession, + sourcePath: String, + targetPath: String, + vocabularies: VocabularyGroup + ): Unit = { + import spark.implicits._ + val dump = spark.read.text(sourcePath).as[String] + dump + .flatMap(s => Crossref2Oaf.convert(s, vocabularies)) + .write + .mode(SaveMode.Overwrite) + .partitionBy("oafType") + .option("compression", "gzip") + .text(targetPath) + + } +} + +object SparkMapDumpIntoOAF { + + def main(args: Array[String]): Unit = { + val logger: Logger = LoggerFactory.getLogger(SparkMapDumpIntoOAF.getClass) + + new SparkMapDumpIntoOAF( + log = logger, + args = args, + propertyPath = "/eu/dnetlib/dhp/collection/crossref/convert_crossref_dump_to_oaf_params.json" + ).initialize().run() + } + +} diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/MagUtility.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/MagUtility.scala index 33f19947a..cc2d7b62f 100644 --- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/MagUtility.scala +++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/MagUtility.scala @@ -14,7 +14,6 @@ import scala.collection.JavaConverters._ case class MAGPaper( paperId: Option[Long], - rank: Option[Int], doi: Option[String], docType: Option[String], paperTitle: Option[String], @@ -29,7 +28,6 @@ case class MAGPaper( journalName: Option[String], journalIssn: Option[String], journalPublisher: Option[String], - journalWebpage: Option[String], conferenceSeriesId: Option[Long], conferenceInstanceId: Option[Long], conferenceName: Option[String], @@ -51,8 +49,6 @@ case class MAGPaper( abstractText: Option[String], // List of authors authors: Option[List[MAGAuthor]], - // List of Fields of Study - fos: Option[List[MAGFieldOfStudy]], urls: Option[List[String]] ) @@ -65,13 +61,6 @@ case class MAGAuthor( GridId: Option[String] ) -case class MAGFieldOfStudy( - FieldOfStudyId: Option[Long], - DisplayName: Option[String], - MainType: Option[String], - Score: Option[Double] -) - object MagUtility extends Serializable { val datatypedict = Map( diff --git a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/SparkCreateMagDenormalizedTable.scala b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/SparkCreateMagDenormalizedTable.scala index cf6c9967c..5f1099de0 100644 --- a/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/SparkCreateMagDenormalizedTable.scala +++ b/dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/collection/mag/SparkCreateMagDenormalizedTable.scala @@ -62,9 +62,7 @@ class SparkCreateMagDenormalizedTable(propertyPath: String, args: Array[String], //next step we create a table containing val authors = MagUtility.loadMagEntity(spark, "Authors", magBasePath) val affiliations = MagUtility.loadMagEntity(spark, "Affiliations", magBasePath) - val paaf = MagUtility.loadMagEntity(spark, "PaperAuthorAffiliations", magBasePath) - - val paperAuthorAffiliations = paaf.join(step0, paaf("PaperId") === step0("PaperId"), "leftsemi") + val paperAuthorAffiliations = MagUtility.loadMagEntity(spark, "PaperAuthorAffiliations", magBasePath) val j1 = paperAuthorAffiliations .join(authors, paperAuthorAffiliations("AuthorId") === authors("AuthorId"), "inner") @@ -116,26 +114,26 @@ class SparkCreateMagDenormalizedTable(propertyPath: String, args: Array[String], step2.count() step1.unpersist() - val fos = MagUtility - .loadMagEntity(spark, "FieldsOfStudy", magBasePath) - .select($"FieldOfStudyId".alias("fos"), $"DisplayName", $"MainType") - - val paperFieldsOfStudy = MagUtility - .loadMagEntity(spark, "PaperFieldsOfStudy", magBasePath) - .select($"FieldOfStudyId", $"Score", $"PaperId") - - val paperFoS = paperFieldsOfStudy - .join(broadcast(fos), fos("fos") === paperFieldsOfStudy("FieldOfStudyId")) - .groupBy("PaperId") - .agg(collect_set(struct("FieldOfStudyId", "DisplayName", "MainType", "Score")).as("FoS")) - - val step3 = step2 - .join(paperFoS, step2("PaperId") === paperFoS("PaperId"), "left") - .select(step2("*"), paperFoS("FoS")) - .cache() - step3.count() - - step2.unpersist() +// val fos = MagUtility +// .loadMagEntity(spark, "FieldsOfStudy", magBasePath) +// .select($"FieldOfStudyId".alias("fos"), $"DisplayName", $"MainType") +// +// val paperFieldsOfStudy = MagUtility +// .loadMagEntity(spark, "PaperFieldsOfStudy", magBasePath) +// .select($"FieldOfStudyId", $"Score", $"PaperId") +// +// val paperFoS = paperFieldsOfStudy +// .join(broadcast(fos), fos("fos") === paperFieldsOfStudy("FieldOfStudyId")) +// .groupBy("PaperId") +// .agg(collect_set(struct("FieldOfStudyId", "DisplayName", "MainType", "Score")).as("FoS")) +// +// val step3 = step2 +// .join(paperFoS, step2("PaperId") === paperFoS("PaperId"), "left") +// .select(step2("*"), paperFoS("FoS")) +// .cache() +// step3.count() +// +// step2.unpersist() val journals = MagUtility .loadMagEntity(spark, "Journals", magBasePath) @@ -143,20 +141,18 @@ class SparkCreateMagDenormalizedTable(propertyPath: String, args: Array[String], $"JournalId", $"DisplayName".as("journalName"), $"Issn".as("journalIssn"), - $"Publisher".as("journalPublisher"), - $"Webpage".as("journalWebpage") + $"Publisher".as("journalPublisher") ) - val step4 = step3 - .join(journals, step3("JournalId") === journals("JournalId"), "left") + val step3 = step2 + .join(journals, step2("JournalId") === journals("JournalId"), "left") .select( - step3("*"), + step2("*"), journals("journalName"), journals("journalIssn"), - journals("journalPublisher"), - journals("journalWebpage") + journals("journalPublisher") ) .cache - step4.count() + step3.count() val paper_urls = MagUtility .loadMagEntity(spark, "PaperUrls", magBasePath) @@ -166,12 +162,11 @@ class SparkCreateMagDenormalizedTable(propertyPath: String, args: Array[String], paper_urls.count - step4 - .join(paper_urls, step4("PaperId") === paper_urls("PaperId")) - .select(step4("*"), paper_urls("urls")) + step3 + .join(paper_urls, step3("PaperId") === paper_urls("PaperId")) + .select(step3("*"), paper_urls("urls")) .select( $"PaperId".as("paperId"), - $"Rank".as("rank"), $"Doi".as("doi"), $"DocType".as("docType"), $"PaperTitle".as("paperTitle"), @@ -202,11 +197,9 @@ class SparkCreateMagDenormalizedTable(propertyPath: String, args: Array[String], $"conferenceLocation".as("conferenceLocation"), $"conferenceStartDate".as("conferenceStartDate"), $"conferenceEndDate".as("conferenceEndDate"), - $"FoS".as("fos"), $"journalName".as("journalName"), $"journalIssn".as("journalIssn"), $"journalPublisher".as("journalPublisher"), - $"journalWebpage".as("journalWebpage"), $"urls" ) .write diff --git a/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/collection/crossref/issn_pub.json b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/collection/crossref/issn_pub.json new file mode 100644 index 000000000..2a9e391df --- /dev/null +++ b/dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/collection/crossref/issn_pub.json @@ -0,0 +1,849 @@ +{ + "URL": "http://dx.doi.org/10.1016/j.joca.2019.11.002", + "resource": { + "primary": { + "URL": "https://linkinghub.elsevier.com/retrieve/pii/S106345841931266X" + } + }, + "member": "78", + "score": 0.0, + "created": { + "date-parts": [ + [ + 2019, + 11, + 14 + ] + ], + "date-time": "2019-11-14T18:08:38Z", + "timestamp": 1573754918000 + }, + "update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy", + "license": [ + { + "start": { + "date-parts": [ + [ + 2020, + 5, + 1 + ] + ], + "date-time": "2020-05-01T00:00:00Z", + "timestamp": 1588291200000 + }, + "content-version": "tdm", + "delay-in-days": 0, + "URL": "https://www.elsevier.com/tdm/userlicense/1.0/" + }, + { + "start": { + "date-parts": [ + [ + 2021, + 5, + 1 + ] + ], + "date-time": "2021-05-01T00:00:00Z", + "timestamp": 1619827200000 + }, + "content-version": "vor", + "delay-in-days": 365, + "URL": "http://www.elsevier.com/open-access/userlicense/1.0/" + } + ], + "ISSN": [ + "1063-4584" + ], + "container-title": [ + "Osteoarthritis and Cartilage" + ], + "issued": { + "date-parts": [ + [ + 2020, + 5 + ] + ] + }, + "issue": "5", + "prefix": "10.1016", + "reference-count": 50, + "indexed": { + "date-parts": [ + [ + 2024, + 2, + 27 + ] + ], + "date-time": "2024-02-27T00:38:44Z", + "timestamp": 1708994324729 + }, + "author": [ + { + "given": "N.", + "family": "Sharma", + "sequence": "first", + "affiliation": [] + }, + { + "given": "P.", + "family": "Drobinski", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "A.", + "family": "Kayed", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "Z.", + "family": "Chen", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "C.F.", + "family": "Kjelgaard-Petersen", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "T.", + "family": "Gantzel", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "M.A.", + "family": "Karsdal", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "M.", + "family": "Michaelis", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "C.", + "family": "Ladel", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "A.C.", + "family": "Bay-Jensen", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "S.", + "family": "Lindemann", + "sequence": "additional", + "affiliation": [] + }, + { + "given": "C.S.", + "family": "Thudium", + "sequence": "additional", + "affiliation": [] + } + ], + "DOI": "10.1016/j.joca.2019.11.002", + "is-referenced-by-count": 27, + "funder": [ + { + "DOI": "10.13039/501100001732", + "name": "Danmarks Grundforskningsfond", + "doi-asserted-by": "publisher" + } + ], + "published": { + "date-parts": [ + [ + 2020, + 5 + ] + ] + }, + "published-print": { + "date-parts": [ + [ + 2020, + 5 + ] + ] + }, + "alternative-id": [ + "S106345841931266X" + ], + "subject": [ + "Orthopedics and Sports Medicine", + "Biomedical Engineering", + "Rheumatology" + ], + "content-domain": { + "domain": [ + "clinicalkey.fr", + "clinicalkey.jp", + "clinicalkey.es", + "clinicalkey.com.au", + "oarsijournal.com", + "clinicalkey.com", + "elsevier.com", + "sciencedirect.com" + ], + "crossmark-restriction": true + }, + "reference": [ + { + "key": "10.1016/j.joca.2019.11.002_bib1", + "series-title": "Priority Medicines for Europe and the World. 2013 Update", + "author": "Kaplan", + "year": "2013" + }, + { + "issue": "August 2016", + "key": "10.1016/j.joca.2019.11.002_bib2", + "article-title": "Osteoarthritis: toward a comprehensive understanding of pathological mechanism", + "volume": "5", + "author": "Chen", + "year": "2017", + "journal-title": "Bone Res" + }, + { + "doi-asserted-by": "crossref", + "first-page": "77", + "issue": "2", + "author": "Sokolove", + "key": "10.1016/j.joca.2019.11.002_bib3", + "DOI": "10.1177/1759720X12467868", + "article-title": "Role of inflammation in the pathogenesis of osteoarthritis: latest findings and interpretations", + "year": "2013", + "volume": "5", + "journal-title": "Ther Adv Musculoskelet Dis" + }, + { + "doi-asserted-by": "crossref", + "issue": "5", + "author": "Alberton", + 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Avaliado pelos pares -dnet:review_levels @=@ 0001 @=@ Artigos; Avaliado pelos pares -dnet:review_levels @=@ 0001 @=@ Artículo de investigación, Investigaciones originales, Artículo evaluado por pares, Investigaciones empíricas -dnet:review_levels @=@ 0001 @=@ Artículo evaluado por pares -dnet:review_levels @=@ 0001 @=@ Artículo evaluado por pares, Ensayos de investigación -dnet:review_levels @=@ 0001 @=@ Artículo evaluado por pares, Investigaciones empíricas, Artículos de investigación -dnet:review_levels @=@ 0001 @=@ Artículo revisado -dnet:review_levels @=@ 0001 @=@ Artículo revisado por pares -dnet:review_levels @=@ 0001 @=@ Artículos de estudiantes, Artículo evaluado por pares, Artículos de investigación -dnet:review_levels @=@ 0001 @=@ Artículos de investigación evaluados por doble ciego -dnet:review_levels @=@ 0001 @=@ Artículos evaluadores por doble ciego -dnet:review_levels @=@ 0001 @=@ Artículos evaluados por pares -dnet:review_levels @=@ 0001 @=@ Artículos evaluados por pares académicos -dnet:review_levels @=@ 0001 @=@ Artículos revisados por pares -dnet:review_levels @=@ 0001 @=@ Avaliadas pelos pares -dnet:review_levels @=@ 0001 @=@ Avaliado anonimamente por pares -dnet:review_levels @=@ 0001 @=@ Avaliado em duplo cego por pares -dnet:review_levels @=@ 0001 @=@ Avaliado pela Editoria -dnet:review_levels @=@ 0001 @=@ Avaliado pela Editoria. Avaliado pelos pares. -dnet:review_levels @=@ 0001 @=@ Avaliado pelo Editoria -dnet:review_levels @=@ 0001 @=@ Avaliado pelo pares -dnet:review_levels @=@ 0001 @=@ Avaliado pelos Editores -dnet:review_levels @=@ 0001 @=@ Avaliado pelos pares -dnet:review_levels @=@ 0001 @=@ Avaliado pelos pares, Artigo de convidado -dnet:review_levels @=@ 0001 @=@ Avaliado pelos pares, Artigos Originais -dnet:review_levels @=@ 0001 @=@ Avaliado pelos pares, Artigos Originais, Artigos de Revisão -dnet:review_levels @=@ 0001 @=@ Avaliado pelos pares. 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Refereed -dnet:review_levels @=@ 0001 @=@ article in peer-reviewed journal -dnet:review_levels @=@ 0001 @=@ articles validés -dnet:review_levels @=@ 0001 @=@ avaliado por pares, temas livres -dnet:review_levels @=@ 0001 @=@ info:eu-repo/semantics/peerReviewed -dnet:review_levels @=@ 0001 @=@ info:ulb-repo/semantics/articlePeerReview -dnet:review_levels @=@ 0001 @=@ proceeding with peer review -dnet:review_levels @=@ 0001 @=@ refereed_publications -dnet:review_levels @=@ 0001 @=@ ul_published_reviewed -dnet:review_levels @=@ 0001 @=@ Άρθρο που έχει αξιολογηθεί από ομότιμους ειδικούς -dnet:review_levels @=@ 0001 @=@ Άρθρο το οποίο έχει περάσει από ομότιμη αξιολόγηση -dnet:review_levels @=@ 0001 @=@ レフェリー付き論文 -dnet:review_levels @=@ 0001 @=@ 印刷物/電子媒体-テクニカルレポート類（査読有り） -dnet:review_levels @=@ 0001 @=@ 印刷物/電子媒体-会議発表論文（査読有り） -dnet:review_levels @=@ 0001 @=@ 印刷物/電子媒体-図書（査読有り） -dnet:review_levels @=@ 0001 @=@ 印刷物/電子媒体-学術雑誌論文（査読有り） -dnet:review_levels @=@ 0001 @=@ 印刷物/電子媒体-紀要論文（査読有り） 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JURNALUL PENTRU MEDICINA SI VIATA S.R.L @=@ S.C. JURNALUL PENTRU MEDICINA SI VIATA S.R.L +dnet:publishers @=@ Japanese Environmental Mutagen Society @=@ The Japanese Environmental Mutagen Society +dnet:publishers @=@ Dalhousie Journal of Interdisciplinary Management @=@ Dalhousie Journal of Interdisciplinary Management +dnet:publishers @=@ The Vacuum Society of Japan @=@ Vacuum Society of Japan +dnet:publishers @=@ Politeknik Kementerian Kesehatan Banjarmasin @=@ Poltekkes Kemenkes Banjarmasin +dnet:publishers @=@ Oxford University Press (OUP) @=@ American Society of Health System Pharmacists +dnet:publishers @=@ Oxford University Press (OUP) @=@ Oxford University Press +dnet:publishers @=@ Oxford University Press (OUP) @=@ Poultry Science Association +dnet:publishers @=@ Oxford University Press (OUP) @=@ The Genetics Society of America +dnet:publishers @=@ Index Copernicus @=@ Index Copernicus International +dnet:publishers @=@ University of Massachusetts Medical School @=@ MCPHS University Library +dnet:publishers @=@ Erzurum Technical University @=@ ETU Sentez Iktisadi ve Idari Bilimler Dergisi, Erzurum Teknik Universitesi +dnet:publishers @=@ Erzurum Technical University @=@ Erzurum Technical University Faculty of Letters History Journal +dnet:publishers @=@ Korea Intelligent Information Systems Society @=@ Korea Intelligent Information System Society +dnet:publishers @=@ Azərbaycan Tibb Universiteti @=@ Azerbaycan Tibb Universiteti +dnet:publishers @=@ Aksaray University @=@ Aksaray University Journal of Science and Engineering +dnet:publishers @=@ Turkiye Klinikleri @=@ Journal of Oncological Sciences (JOS) +dnet:publishers @=@ Turkiye Klinikleri @=@ Otorhinolaryngology and Head and Neck Surgery Society +dnet:publishers @=@ Multi-Science Publishing Co. 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@=@ Baishideng Publishing Group Co +dnet:publishers @=@ Universidade do Estado do Rio Grande do Norte @=@ Revista Eletronica Cientifica Ensino Interdisciplinar +dnet:publishers @=@ Department of Polymer Engineering, Scientific Society of Mechanical Engineering @=@ Department of Polymer Engineering Budapest University of Technology & Economics), Scientific Society of Mechanical Engineerin +dnet:publishers @=@ Program Studi Kesehatan Masyarakat Universitas Negeri Gorontalo @=@ Program Studi Kesehatan Masyarakat Universitas Negeri Gorontalo +dnet:publishers @=@ United Nations University @=@ United Nations University Institute for Environment and Human Security (UNU-EHS) +dnet:publishers @=@ United Nations University @=@ United Nations University Institute for Integrated Management of Material Fluxes and of Resources (UNU-FLORES) +dnet:publishers @=@ California State University, Office of the Chancellor @=@ The Renaissance Group +dnet:publishers @=@ Kastamonu University @=@ Kastamonu Universitesi Iktisadi ve Idari Bilimler Fakultesi Dergisi +dnet:publishers @=@ Kastamonu University @=@ Kastamonu University Journal of Forestry Faculty +dnet:publishers @=@ XMLink @=@ Asian Society of Cardiovascular Imaging +dnet:publishers @=@ XMLink @=@ Asian Society of Gynecologic Oncology +dnet:publishers @=@ XMLink @=@ Chonnam National University Medical School +dnet:publishers @=@ XMLink @=@ Health Supplements Future Forum +dnet:publishers @=@ XMLink @=@ Korean Academy of Medical Sciences +dnet:publishers @=@ XMLink @=@ Korean Academy of Nursing Administration +dnet:publishers @=@ XMLink @=@ Korean Academy of Oral and Maxillofacial Radiology +dnet:publishers @=@ XMLink @=@ Korean Academy of Periodontology +dnet:publishers @=@ XMLink @=@ Korean Association of Pediatric Surgeons +dnet:publishers @=@ XMLink @=@ Korean Association of Physical Anthropologists +dnet:publishers @=@ XMLink @=@ Korean Association of Thyroid and Endocrine Surgeons +dnet:publishers @=@ XMLink @=@ Korean 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+dnet:publishers @=@ XMLink @=@ Korean Society of Echocardiography +dnet:publishers @=@ XMLink @=@ Korean Society of Gastrointestinal Surgery +dnet:publishers @=@ XMLink @=@ Korean Society of Global Health +dnet:publishers @=@ XMLink @=@ Korean Society of Heart Failure +dnet:publishers @=@ XMLink @=@ Korean Society of Interventional Cardiology +dnet:publishers @=@ XMLink @=@ Korean Society of Lipidology and Atherosclerosis +dnet:publishers @=@ XMLink @=@ Korean Society of Magnetic Resonance in Medicine +dnet:publishers @=@ XMLink @=@ Korean Society of Nursing Science +dnet:publishers @=@ XMLink @=@ Korean Society of Occupational and Environmental Medicine +dnet:publishers @=@ XMLink @=@ Korean Society of Perinatology +dnet:publishers @=@ XMLink @=@ Korean Society of Spine Surgery +dnet:publishers @=@ XMLink @=@ Korean Vaccine Society +dnet:publishers @=@ XMLink @=@ Society for Cognitive Intervention +dnet:publishers @=@ XMLink @=@ Society of Korean Leprologists +dnet:publishers @=@ XMLink @=@ The Korean Academy of Conservative Dentistry +dnet:publishers @=@ XMLink @=@ The Korean Academy of Prosthodontics +dnet:publishers @=@ XMLink @=@ The Korean Association of Robotic Surgeons +dnet:publishers @=@ XMLink @=@ The Korean Dental Society of Anesthesiology +dnet:publishers @=@ XMLink @=@ The Korean Fracture Society +dnet:publishers @=@ XMLink @=@ The Korean Gastric Cancer Association +dnet:publishers @=@ XMLink @=@ The Korean Glaucoma Society +dnet:publishers @=@ XMLink @=@ The Korean Hip Society +dnet:publishers @=@ XMLink @=@ The Korean Nutrition Society +dnet:publishers @=@ XMLink @=@ The Korean Nutrition Society and The Korean Society of Community Nutrition +dnet:publishers @=@ XMLink @=@ The Korean Orthopaedic Association +dnet:publishers @=@ XMLink @=@ The Korean Society of Cardiology +dnet:publishers @=@ XMLink @=@ The Korean Society of Community Nutrition +dnet:publishers @=@ XMLink @=@ The Korean Society of Electrolyte Metabolism +dnet:publishers @=@ XMLink @=@ The Korean Society of Menopause +dnet:publishers @=@ XMLink @=@ The Korean Society of Pediatric Gastroenterology, Hepatology and Nutrition +dnet:publishers @=@ XMLink @=@ The Korean Society of Pediatric Infectious Diseases +dnet:publishers @=@ XMLink @=@ The Korean Society of Radiology +dnet:publishers @=@ XMLink @=@ The Korean Society of Veterinary Science +dnet:publishers @=@ XMLink @=@ The Korean Surgical Society +dnet:publishers @=@ XMLink @=@ The Korean Urological Association +dnet:publishers @=@ XMLink @=@ Yonsei University College of Medicine +dnet:publishers @=@ Tropical Journal of Applied Natural Sciences (TJANS) @=@ Tropical Journal of Applied Natural Sciences (TJANS) +dnet:publishers @=@ RELIEF - revue electronique de litterature francaise, Radboud University @=@ RELIEF - revue electronique de litterature francaise, Radboud University +dnet:publishers @=@ Faculdade de Educacao da Universidade Federal de Minas Gerais @=@ Universidade Federal de Minas Gerais - Pro-Reitoria de Pesquisa +dnet:publishers @=@ Patricia Seybold Group (PSG) @=@ Patricia Seybold Group +dnet:publishers @=@ American Speech Language Hearing Association @=@ American Speech-Language-Hearing Association +dnet:publishers @=@ Fakultas Agama Islam Universitas Ibn Khaldun Bogor @=@ Fakultas Agama Islam Universitas Ibn Khaldun Bogor +dnet:publishers @=@ International Association for the Study of Popular Music (IASPM) @=@ The International Association for the Study of Popular Music +dnet:publishers @=@ Group SBD @=@ Scientific Big Data, S.L. +dnet:publishers @=@ AGHU University of Science and Technology Press @=@ AGH University of Science and Technology Press +dnet:publishers @=@ Institute of Juridical, Political and Sociological Research @=@ Institute of Juridical, Political and Sociological Research +dnet:publishers @=@ Firat Universitesi @=@ Firat Universitesi Muhendislik Bilimleri Dergisi +dnet:publishers @=@ Firat Universitesi @=@ Firat Universitesi Sosyal Bilimler Dergisi +dnet:publishers @=@ Firat Universitesi @=@ Turkish Journal of Educational Studies +dnet:publishers @=@ Universidad de Panama @=@ Universidad de Panama +dnet:publishers @=@ Logos Verlag Berlin GmbH @=@ Logos Verlag Berlin +dnet:publishers @=@ Cosmology Science Publishers @=@ Journal of Astrobiology and Space Science +dnet:publishers @=@ Hacettepe Journal of Mathematics and Statistics @=@ Hacettepe Journal of Mathematics and Statistics +dnet:publishers @=@ Mathematical Society of Japan (Project Euclid) @=@ The Mathematical Society of Japan +dnet:publishers @=@ Sekolah Tinggi Ilmu Ekonomi Bisnis Indonesia (STIEBI) @=@ Jebi (Jurnal Ekonomi Bisnis Indonesia) STIE Bisnis Indonesia +dnet:publishers @=@ University of Missouri Libraries @=@ University of Missouri +dnet:publishers @=@ Mukaddime @=@ Mukaddime +dnet:publishers @=@ Journal of Odor and Indoor Environment @=@ Journal of Odor and Indoor Environment +dnet:publishers @=@ Inter-university Consortium for Political and Social Research (ICPSR) @=@ Inter-university Consortium for Political and Social Research +dnet:publishers @=@ Environmental and Engineering Geophysical Society @=@ Environmental and Engineering Geophysical Society +dnet:publishers @=@ Korean Society of CardioMetabolic Syndrome @=@ Korean Society of CardioMetabolic Syndrome +dnet:publishers @=@ Sherborne Gibbs Ltd. @=@ Sherborne Gibbs +dnet:publishers @=@ Elsevier BV @=@ American College of Chest Physicians +dnet:publishers @=@ Elsevier BV @=@ American Dental Association +dnet:publishers @=@ Elsevier BV @=@ American Pharmacists Association +dnet:publishers @=@ Elsevier BV @=@ Elsevier +dnet:publishers @=@ Elsevier BV @=@ Elsevier - Academic Press +dnet:publishers @=@ Elsevier BV @=@ Elsevier - International Federation of Automatic Control (IFAC) +dnet:publishers @=@ Elsevier BV @=@ Elsevier - WB Saunders +dnet:publishers @=@ Elsevier BV @=@ Social Science Electronic Publishing +dnet:publishers @=@ Elsevier BV @=@ Woodhead Publishing +dnet:publishers 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Univeristas Tompotika Luwuk +dnet:publishers @=@ Universitas Tompotika Luwuk @=@ Fakultas Pertanian, Universitas Tompotika Luwuk +dnet:publishers @=@ Istanbul Ticaret Universitesi @=@ Sosyal Bilimler Dergisi, Istanbul Ticaret Universitesi +dnet:publishers @=@ Centre pour la Communication Scientifique Directe (CCSD) @=@ Centre pour la Communication Scientifique Directe +dnet:publishers @=@ Centre pour la Communication Scientifique Directe (CCSD) @=@ Logical Methods in Computer Science +dnet:publishers @=@ JCFCorp SG PTE LTD @=@ CA and C Press AB +dnet:publishers @=@ JCFCorp SG PTE LTD @=@ Centro de Investigaciones y Publicaciones Farmaceuticas (CIPF) +dnet:publishers @=@ JCFCorp SG PTE LTD @=@ European Chemical Bulletin +dnet:publishers @=@ Verlag Dr. Otto Schmidt @=@ Verlag Dr. Otto Schmidt KG +dnet:publishers @=@ Malatya Turgut Ozal University @=@ NATURENGS MTU Journal of Engineering and Natural Sciences, Malatya Turgut Ozal University +dnet:publishers @=@ LPPM Universitas Advent Indonesia @=@ Fakultas Teknologi Informasi - Universitas Advent Indonesia +dnet:publishers @=@ Institute for Law and Public Policy @=@ Institute for Law and Public Policy +dnet:publishers @=@ The New Contree Editorial Board @=@ The New Contree Editorial Board +dnet:publishers @=@ Yeungnam University Institute of Humanities @=@ The Institute of the Humanities +dnet:publishers @=@ Journal of Advanced Research in Natural and Applied Sciences @=@ Journal of Advanced Research in Natural and Applied Sciences +dnet:publishers @=@ IKIP Siliwangi Bandung @=@ STKIP Siliwangi Bandung +dnet:publishers @=@ Sosyal Bilimler Arastirmalari Dernegi @=@ Ekonomi Bilimleri Dergisi +dnet:publishers @=@ Sosyal Bilimler Arastirmalari Dernegi @=@ International Journal of Economics and Finance Studies +dnet:publishers @=@ Sosyal Bilimler Arastirmalari Dernegi @=@ International Journal of eBusiness and eGovernment Studies - The Social Sciences Research Society +dnet:publishers @=@ Korean Society for Clinical 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Utemissov West Kazakhstan University @=@ M. Utemissov West Kazakhstan State University +dnet:publishers @=@ Magister Administrasi Publik Fakultas Ilmu Sosial dan Ilmu Politik Universitas Mulawarman @=@ Magister Administrasi Publik Fakultas Ilmu Sosial dan Ilmu Politik Universitas Mulawarman +dnet:publishers @=@ Karamanoglu Mehmetbey Universitesi Edebiyat Fakultesi Dergisi @=@ Karamanoglu Mehmetbey Universitesi Edebiyat Fakultesi Dergisi +dnet:publishers @=@ Ubiquity Press, Ltd. @=@ UKSG +dnet:publishers @=@ Sheffield Hallam University @=@ CRESR, Sheffield Hallam University +dnet:publishers @=@ Science China Press., Co. Ltd. @=@ Science in China Press +dnet:publishers @=@ Radcliffe Media Media Ltd @=@ Radcliffe Group Ltd +dnet:publishers @=@ Herman Otto Intezet Nonprofit Kft. @=@ Magyar Állatorvosok Lapja +dnet:publishers @=@ Limited Liability Company Publishing Service Internauka (Publications) @=@ Internauka +dnet:publishers @=@ Akademi Kebidanan Harapan Mulya Ponorogo @=@ Akbid Harapan Mulya Ponorogo +dnet:publishers @=@ Thamar University - Faculty of Arts @=@ Thamar University - Faculty of Arts +dnet:publishers @=@ Department of Veterinary Sciences, Yozgat Bozok University @=@ Yozgat Bozok University +dnet:publishers @=@ Academy of Economic Studies @=@ National Institute for Economic Research +dnet:publishers @=@ Asociación Didáctica Andalucia @=@ Asociacion Didactica Andalucia +dnet:publishers @=@ American School of Classical Studies at Athens (ASCSA) @=@ The American School of Classical Studies at Athens +dnet:publishers @=@ Walden University @=@ Laureate Education, Inc. +dnet:publishers @=@ Egitim Bilimleri Dergisi @=@ Egitim Bilimleri Dergisi +dnet:publishers @=@ American Chemical Society (ACS) @=@ American Chemical Society +dnet:publishers @=@ Ural State Pedagogical University @=@ Ural State Pedagogical University +dnet:publishers @=@ Dicle University @=@ Dicle University Journal of Faculty of Veterinary Medicine +dnet:publishers @=@ Archives of Health @=@ Archives of Health +dnet:publishers @=@ International Society of Comparative Psychology @=@ International Society of Comparative Psychology +dnet:publishers @=@ Marshfield Clinic Research Institute @=@ Marshfield Clinic Research Foundation +dnet:publishers @=@ Hacettepe University Faculty of Health Sciences Journal @=@ Hacettepe University Faculty of Health Sciences Journal +dnet:publishers @=@ Aksaray University Journal of Science and Engineering @=@ Aksaray University Journal of Science and Engineering +dnet:publishers @=@ Gaziantep Universitesi @=@ Gaziantep Universitesi Spor Bilimleri Dergisi +dnet:publishers @=@ The Korean Society of Cardiology @=@ The Korean Society of Cardiology +dnet:publishers @=@ Hebrew University Magnes Press @=@ The Hebrew University Magnes Press +dnet:publishers @=@ Argumentum @=@ Argumentum +dnet:publishers @=@ Institute of Applied Physics @=@ Institute of Applied Physics +dnet:publishers @=@ INIF E-DERGI, Inonu University @=@ INIF E-DERGI, Inonu University +dnet:publishers @=@ Walter de Gruyter GmbH @=@ Berkeley Electronic Press +dnet:publishers @=@ Walter de Gruyter GmbH @=@ Faculty of Veterinary Medicine - Skopje +dnet:publishers @=@ Walter de Gruyter GmbH @=@ Oldenbourg Wissenschaftsverlag +dnet:publishers @=@ Ecletica Quimica @=@ Ecletica Quimica Journal +dnet:publishers @=@ Universidad Mayor de San Andres (Publications) @=@ Universidad Mayor de San Andres +dnet:publishers @=@ University of the West of England, Bristol @=@ Digital Cultures Research Centre Press, UWE Bristol +dnet:publishers @=@ Ion Creanga State Pedagogical University @=@ Institute of Educational Sciences +dnet:publishers @=@ Ion Creanga State Pedagogical University @=@ Universitatea de Stat din Tiraspol +dnet:publishers @=@ Institute of Information Management @=@ Department of Information Management, University of the Punjab, Lahore +dnet:publishers @=@ Associação Educacional de Vitória - AEV/FAESA @=@ Associacao Educacional de Vitoria +dnet:publishers @=@ ScienceOpen @=@ African Minds +dnet:publishers @=@ ScienceOpen @=@ Ecological Society +dnet:publishers @=@ Saint Louis University @=@ St. Louis University +dnet:publishers @=@ Kilis 7 Aralik Universitesi Ilahiyat Fakultesi Dergisi @=@ Kilis 7 Aralik Universitesi Ilahiyat Fakultesi Dergisi +dnet:publishers @=@ Korean Society for Mass Spectrometry @=@ Korean Society Mass Spectrometry +dnet:publishers @=@ American Society of Plant Biologists (ASPB) @=@ American Society of Plant Biologists +dnet:publishers @=@ Izmir Katip Celebi University @=@ Journal of Business Innovation and Governance +dnet:publishers @=@ Edorium Journals Pvt. Ltd. @=@ EDORIUM Journals, Pvt., Ltd. +dnet:publishers @=@ Rektorat Universitas Putra Indonesia YPTK Padang @=@ Rektorat Universitas Putra Indonesia YPTK Padang +dnet:publishers @=@ Journal of Science and Engineering, Necmettin Erbakan University @=@ Journal of Science and Engineering, Necmettin Erbakan University +dnet:publishers @=@ MIND Group @=@ MIND Group +dnet:publishers @=@ Jurnal Medula, Fakultas Kedokteran Universitas Halu Oleo @=@ Jurnal Medula, Fakultas Kedokteran Universitas Halu Oleo +dnet:publishers @=@ American Marketing Association (AMA) @=@ American Marketing Association +dnet:publishers @=@ American Industrial Hygiene Association (AIHA) @=@ American Industrial Hygiene Association +dnet:publishers @=@ University of Alberta Libraries @=@ Aboriginal Policy Studies +dnet:publishers @=@ University of Alberta Libraries @=@ Canadian Health Libraries Association +dnet:publishers @=@ University of Alberta Libraries @=@ Journal of Hebrew Scriptures +dnet:publishers @=@ South Florida Journal of Health @=@ South Florida Journal of Health +dnet:publishers @=@ Korean Academy of Periodontology @=@ Korean Academy of Periodontology +dnet:publishers @=@ American Veterinary Medical Association (AVMA) @=@ American Veterinary Medical Association +dnet:publishers @=@ Yonsei University College of Medicine @=@ Yonsei University College of Medicine +dnet:publishers @=@ SAFE Network @=@ Rektorat Universitas Putra Indonesia YPTK Padang +dnet:publishers @=@ Inonu Universitesi Hukuk Fakultesi Dergisi @=@ Inonu Universitesi Hukuk Fakultesi Dergisi +dnet:publishers @=@ Escola de Enfermagem de Ribeirao Preto @=@ Escola de Enfermagem de Ribeirão Preto +dnet:publishers @=@ Universitas Negeri Makassar @=@ Fakultas MIPA Universitas Negeri Makassar +dnet:publishers @=@ Amasya University @=@ Review of the Faculty of Divinity of Amasya University +dnet:publishers @=@ PLUS COMMUNICATION CONSULTING SRL @=@ Technium Science +dnet:publishers @=@ Instituto Nacional de Neurologia y Neurocirugia Manuel Velasco Suarez @=@ Revista de Enfermeria Neurologica INNN +dnet:publishers @=@ Tadqiqot @=@ Bukhara State University +dnet:publishers @=@ Tadqiqot @=@ Journal of Research Publication House LLC +dnet:publishers @=@ Tadqiqot @=@ National Library Republic of Uzbekistan +dnet:publishers @=@ Tadqiqot @=@ Publishing & Printing House of Innovative Development +dnet:publishers @=@ Tadqiqot @=@ Samarkand State Institute of Foreign Languages +dnet:publishers @=@ Revista Venezolana de Gerencia (RVG), Universidad del Zulia @=@ Revista Venezolana de Gerencia (RVG), Universidad del Zulia +dnet:publishers @=@ Namik Kemal University @=@ Balkan Sosyal Bilimler Dergisi +dnet:publishers @=@ Namik Kemal University @=@ Humanitas Uluslararasi Sosyal Bilimler Dergisi +dnet:publishers @=@ Namik Kemal University @=@ Tekirdag Namik Kemal Universitesi Ilahiyat Fakultesi Tasavvur / Tekirdag Ilahiyat Dergisi +dnet:publishers @=@ Ferrata Storti Foundation (Haematologica) @=@ Ferrata Storti Foundation +dnet:publishers @=@ University of Saints Cyril and Methodius @=@ Faculty of Social Sciences, University of Saints Cyril and Methodius +dnet:publishers @=@ Italian Society of Sivilculture and Forest Ecology (SISEF) @=@ SISEF +dnet:publishers @=@ Indonesian Institute for Counseling, Education and Therapy @=@ Indonesian Institute for Counseling, Education and Therapy (IICET) +dnet:publishers @=@ S. Hirzel Verlag @=@ S. Hirzel Verlag +dnet:publishers @=@ Faculty Of Medicine And Surgery - University Of Santo Tomas - Manila @=@ Faculty Of Medicine And Surgery - University Of Santo Tomas - Manila +dnet:publishers @=@ EPP Publications Ltd. @=@ EPP Publications +dnet:publishers @=@ International Society of Academicians @=@ International Journal of Life Sciences and Biotechnology, International Society of Academicians +dnet:publishers @=@ Georesursy LLC @=@ Georesursy +dnet:publishers @=@ Ediser Srl @=@ mEDRA +dnet:publishers @=@ Universite de Geneve @=@ The Science Breaker +dnet:publishers @=@ Colorado Library Consortium (CLiC) @=@ Colorado Library Consortium (CLiC) +dnet:publishers @=@ Necmettin Erbakan Universitesi Hukuk Fakultesi Dergisi, Necmettin Erbakan University @=@ Necmettin Erbakan Universitesi Hukuk Fakultesi Dergisi, Necmettin Erbakan University +dnet:publishers @=@ Universitatea de Stat din Tiraspol @=@ Universitatea de Stat din Tiraspol +dnet:publishers @=@ Academic Research Publishing Group (Publications) @=@ Academic Research Publishing Group +dnet:publishers @=@ Ukrainian Geological Company @=@ Ukrainian State Geological Research Institute +dnet:publishers @=@ Institut Agama Islam Riyadlotul Mujahidin (IAIRM) @=@ Ngabari: Jurnal Studi Islam dan Sosial, Institut Agama Islam Riyadlatul Mujahidin (IAIRM) Ngabar +dnet:publishers @=@ Korean Association of Thyroid and Endocrine Surgeons @=@ Korean Association of Thyroid and Endocrine Surgeons +dnet:publishers @=@ Society for Biotechnology, Japan @=@ The Society for Biotechnology, Japan +dnet:publishers @=@ Bioenergy Studies, Black Sea Agricultural Research Institute @=@ Bioenergy Studies, Black Sea Agricultural Research Institute +dnet:publishers @=@ International Scientific Publishers - Advances in Biomedicine and Pharmacy @=@ International Scientific Publishers +dnet:publishers @=@ Society of Computer Chemistry Japan @=@ Society of Computer Chemistry, Japan +dnet:publishers @=@ Finnish Zoological and Botanical Publishing Board @=@ BioOne (Finnish Zoological and Botanical Publishing Board) +dnet:publishers @=@ Selcuklu Medeniyeti Arastirmalari Dergisi (SEMA) @=@ Selcuklu Medeniyeti Arastirmalari Dergisi (SEMA) +dnet:publishers @=@ Mimar Sinan Guzel Sanatlar Universitesi @=@ MSGSÜ Sosyal Bilimler Dergisi +dnet:publishers @=@ Instituto Multiprofissional de Ensino @=@ Revista Multidisciplinar em Educacao e Meio Ambiente +dnet:publishers @=@ Instituto Multiprofissional de Ensino @=@ Revista Multidisciplinar em Saude +dnet:publishers @=@ ILIRIAS Research Institute @=@ Ilirias Research Institute +dnet:publishers @=@ Maya Global Education Society @=@ GIAP Journals +dnet:publishers @=@ Maney Publishing @=@ Maney Publishing +dnet:publishers @=@ University of Aden - Faculty of Economics and Administration @=@ University of Aden - Faculty of Economics and Administration +dnet:publishers @=@ Scientific Press (SMC-PRIVATE) Limited @=@ Scientific Platform +dnet:publishers @=@ Korean Society of Clinical Nutrition @=@ Korean Society of Clinical Nutrition +dnet:publishers @=@ Institute for Operations Research and the Management Sciences (INFORMS) @=@ Institute for Operations Research and the Management Sciences +dnet:publishers @=@ Fakultas Tarbiyah, Institut PTIQ Jakarta @=@ Fakultas Tarbiyah, Institut PTIQ Jakarta +dnet:publishers @=@ International Journal of Engineering Technologies @=@ International Journal of Engineering Technologies +dnet:publishers @=@ EScience Press Inc (Publications) @=@ EScience Press Inc +dnet:publishers @=@ MAS Journal of Applied Sciences @=@ MAS Journal of Applied Sciences +dnet:publishers @=@ Inonu University @=@ INIF E-DERGI, Inonu University +dnet:publishers @=@ Inonu University @=@ Inonu Universitesi Egitim Bilimleri Enstitusu Dergisi +dnet:publishers @=@ Inonu University @=@ Inonu Universitesi Hukuk Fakultesi Dergisi +dnet:publishers @=@ Inonu University @=@ Inonu Universitesi Kultur ve Sanat Dergisi/Inonu University Journal of Culture and Art +dnet:publishers @=@ Inonu University @=@ Inonu University Journal of Art and Design +dnet:publishers @=@ Inonu University @=@ Inonu University Journal of the Faculty of Education +dnet:publishers @=@ Inonu University @=@ Institute of Social Sciences +dnet:publishers @=@ Korean Association of Southeast Asian Studies @=@ Korean Association of Southeast Asian Studies +dnet:publishers @=@ Mugla Sitki Kocman University @=@ Medical Journal of Mugla Sitki Kocman University, Mugla Sitki Kocman University +dnet:publishers @=@ Mugla Sitki Kocman University @=@ Mugla Journal of Science and Technology +dnet:publishers @=@ Mugla Sitki Kocman University @=@ Mugla Sitki Kocman University Journal of Education +dnet:publishers @=@ PAGEPress Publications @=@ Associazione Acque Sotterranee +dnet:publishers @=@ Godisen Zbornik, Faculty of Philosophy, Ss. 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Cyril and Methodius Skopje +dnet:publishers @=@ Brazilian Journal of Health Review @=@ Brazilian Journal of Health Review +dnet:publishers @=@ VLDB Endowment @=@ VLDB Endowment +dnet:publishers @=@ Staroslavenski institut @=@ Staroslavenski Institut +dnet:publishers @=@ AccScience Publishing @=@ Journal of Clinical and Translational Research +dnet:publishers @=@ African Journals Online (AJOL) @=@ African Journals Online +dnet:publishers @=@ Universitas Sriwijaya (Relawan) @=@ Fakultas Kedokteran Universitas Sriwijaya +dnet:publishers @=@ Universitas Sriwijaya (Relawan) @=@ Jurusan Teknik Sipil dan Perencanaan Universitas Sriwijaya +dnet:publishers @=@ Universitas Sriwijaya (Relawan) @=@ Lembaga Penelitian Pengabdian Kepada Masyarakat Universitas Sriwijaya +dnet:publishers @=@ Medknow @=@ Medknow Publications +dnet:publishers @=@ The University of Haripur @=@ University of Haripur +dnet:publishers @=@ Human Resources Management Academic Research Society (HRMARS) @=@ Human Resource Management Academic Research Society +dnet:publishers @=@ Universidade Vale do Rio Verde (UninCor) @=@ Universidade Vale do Rio Verde +dnet:publishers @=@ Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA) @=@ Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria +dnet:publishers @=@ Marubhoomi Shodh sanstan @=@ Scientific Journals International +dnet:publishers @=@ Modern Humanities Research Association @=@ Modern Humanities Research Association +dnet:publishers @=@ Canadian Society of Hospital Pharmacists (CSHP) @=@ Canadian Society of Hospital Pharmacists +dnet:publishers @=@ Universitas Kristen Indonesia Paulus - Civil Engineering @=@ Universitas Kristen Indonesia Paulus +dnet:publishers @=@ Technomed Holdings LLC @=@ Technomed Holdin­gs LLC +dnet:publishers @=@ American Association of Petroleum Geologists AAPG/Datapages @=@ AAPG/Datapages +dnet:publishers @=@ National Institute of Informatics (NII) @=@ National Institute of Informatics +dnet:publishers @=@ Casa Publicadora @=@ Casa Publicadora +dnet:publishers @=@ Universitas Madura @=@ Jurnal Makro: Manajemen dan Kewirausahaan, Universitas Madura +dnet:publishers @=@ Institute of Philosophy of the Czech Academy of Sciences @=@ Filosofia Publishing House +dnet:publishers @=@ Institute of Philosophy of the Czech Academy of Sciences @=@ Journal of Philosophy +dnet:publishers @=@ Society for Industrial & Applied Mathematics (SIAM) @=@ Society for Industrial and Applied Mathematics +dnet:publishers @=@ University of Belgrade Faculty of Law (Publications) @=@ Univerzitet u Beogradu - Pravni fakultet +dnet:publishers @=@ Front Matter @=@ Ideas +dnet:publishers @=@ Front Matter @=@ Verfassungsblog +dnet:publishers @=@ American Society of Agricultural and Biological Engineers (ASABE) @=@ American Society of Agricultural and Biological Engineers +dnet:publishers @=@ Genetics Society of Japan @=@ The Genetics Society of Japan +dnet:publishers @=@ The Korean Glaucoma Society @=@ The Korean Glaucoma Society +dnet:publishers @=@ UCLA American Indian Studies Center @=@ UCLA American Indian Studies Center +dnet:publishers @=@ Europa Digital & Publishing @=@ Europa Digital and Publishing +dnet:publishers @=@ Universitas Gunung Rinjani @=@ Jurnal JURIDICA Universitas Gunung Rinjani +dnet:publishers @=@ Universitas Sam Ratulangi @=@ Eugenia +dnet:publishers @=@ Universitas Sam Ratulangi @=@ Jurnal Administrasi Bisnis +dnet:publishers @=@ Universitas Sam Ratulangi @=@ Jurnal Teknik Informatika +dnet:publishers @=@ Universitas Sam Ratulangi @=@ Kajian Linguistik +dnet:publishers @=@ Universitas Cenderawasih @=@ Fakultas Ekonomi dan Bisnis, Universitas Cenderawasih +dnet:publishers @=@ International Union of Pure and Applied Chemistry (IUPAC) @=@ International Union of Pure and Applied Chemistry +dnet:publishers @=@ Society for Hard Tissue Regenerative Biology @=@ The Society for Hard Tissue Regenerative Biology +dnet:publishers @=@ Institute of Power Engineering @=@ Institute of Power Engineering +dnet:publishers @=@ Clarivate @=@ Publons +dnet:publishers @=@ Clarivate @=@ Thomson Reuters (Prous Science) +dnet:publishers @=@ Center for Constitutional Studies @=@ Institute for Law and Public Policy +dnet:publishers @=@ Mechanical Engineering Research Institute of the Russian Academy of Sciences @=@ Mechan­ical Engineering Res­earch Institute of the Russian Academy of Sciences +dnet:publishers @=@ Institute of Educational Sciences @=@ Institute of Educational Sciences +dnet:publishers @=@ Universidad Loyola Andalucia @=@ Facultad de Teologia de Granada +dnet:publishers @=@ Fundacion Mexicana de Estudios Politicos y Administrativos. A.C - FUNDAMESPA @=@ Fundacion Mexicana de Estudios Políticos y Administrativos. A.C - FUNDAMESPA +dnet:publishers @=@ Revista de la Universidad del Zulia, Universidad del Zulia @=@ Revista de la Universidad del Zulia, Universidad del Zulia +dnet:publishers @=@ Yaroslavl State Pedagogical University named after K.D. Ushinsky @=@ Yaroslavl State Pedagogical University +dnet:publishers @=@ Universidad de los Andes @=@ Facultad de Artes y Humanidades +dnet:publishers @=@ Universidad de los Andes @=@ Universidad de los Andes +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ Agribusiness Department Universitas Negeri Gorontalo +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ Fakultas Hukum Universitas Negeri Gorontalo +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ Fakultas Olahraga dan Kesehatan Universitas Negeri Gorontalo +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ Fakultas Teknik Universitas Negeri Gorontalo +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ PEDAGOGIKA Jurnal Ilmu Pendidikan Fakultas Ilmu Pendidikan Universitas Negeri Gorontalo +dnet:publishers @=@ Universitas Negeri Gorontalo @=@ Program Studi Kesehatan Masyarakat Universitas Negeri Gorontalo +dnet:publishers @=@ Ondokuz Mayis University Review of the Faculty of Divinity @=@ Ondokuz Mayis University 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Institute of Society Transformation +dnet:publishers @=@ Omer Halisdemir Universitesi Muhendislik Bilimleri Dergisi @=@ Omer Halisdemir Universitesi Muhendislik Bilimleri Dergisi +dnet:publishers @=@ Al-Jamiah Research Centre @=@ Al-Jami'ah Research Centre +dnet:publishers @=@ Hadtudomany @=@ Hadtudomány +dnet:publishers @=@ Institute of Sensory Organs @=@ Journal of Hearing Science +dnet:publishers @=@ Revista de la Facultad de Derecho @=@ Revista de la Facultad de Derecho +dnet:publishers @=@ Euroasia Journal of Mathematics, Engineering, Natural and Medical Sciences @=@ Euroasia Journal of Mathematics, Engineering, Natural and Medical Sciences +dnet:publishers @=@ Institute o Archaeology and Ethnography NAS RA @=@ Institute o Archaeology and Ethnography NAS RA +dnet:publishers @=@ Science Repository OU @=@ Gratis Research +dnet:publishers @=@ Instituto para la Investigacion Educativa y el Desarrollo PedagoGY @=@ Instituto para la Investigacion Educativa y el Desarrollo Pedagogico 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Sturgis Library @=@ Kennesaw State University, Horace W. 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(British) +dnet:countries @=@ dnet:countries @=@ VI @=@ Virgin Islands, U.S. +dnet:countries @=@ dnet:countries @=@ WF @=@ Wallis and Futuna +dnet:countries @=@ dnet:countries @=@ EH @=@ Western Sahara +dnet:countries @=@ dnet:countries @=@ YE @=@ Yemen +dnet:countries @=@ dnet:countries @=@ YU @=@ Yugoslavia +dnet:countries @=@ dnet:countries @=@ ZM @=@ Zambia +dnet:countries @=@ dnet:countries @=@ ZW @=@ Zimbabwe +dnet:countries @=@ dnet:countries @=@ AX @=@ Åland Islands +ec:funding_relations @=@ ec:funding_relations @=@ ec:hasframeworkprogram @=@ hasframeworkprogram +ec:funding_relations @=@ ec:funding_relations @=@ ec:hasprogram @=@ hasprogram +ec:funding_relations @=@ ec:funding_relations @=@ ec:hasspecificprogram @=@ hasspecificprogram dnet:dataCite_date @=@ dnet:dataCite_date @=@ available @=@ available dnet:dataCite_date @=@ dnet:dataCite_date @=@ copyrighted @=@ copyrighted dnet:dataCite_date @=@ dnet:dataCite_date @=@ created @=@ created @@ -63,110 +438,25 @@ 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fileCSV dnet:protocols @=@ dnet:protocols @=@ fileGzip @=@ fileGzip dnet:protocols @=@ dnet:protocols @=@ files_by_rpc @=@ files_by_rpc dnet:protocols @=@ dnet:protocols @=@ files_from_mdstore @=@ files_from_mdstore @@ -991,6 +1093,7 @@ dnet:protocols @=@ dnet:protocols @=@ oai @=@ oai dnet:protocols @=@ dnet:protocols @=@ oai_sets @=@ oai_sets dnet:protocols @=@ dnet:protocols @=@ other @=@ other dnet:protocols @=@ dnet:protocols @=@ re3data @=@ re3data +dnet:protocols @=@ dnet:protocols @=@ remoteMdstore @=@ remoteMdstore dnet:protocols @=@ dnet:protocols @=@ rest @=@ rest dnet:protocols @=@ dnet:protocols @=@ rest_json2xml @=@ rest_json2xml dnet:protocols @=@ dnet:protocols @=@ sftp @=@ sftp @@ -998,216 +1101,1799 @@ dnet:protocols @=@ dnet:protocols @=@ soap @=@ soap dnet:protocols @=@ dnet:protocols @=@ sparql @=@ sparql dnet:protocols @=@ dnet:protocols @=@ sword @=@ sword dnet:protocols @=@ dnet:protocols @=@ targz @=@ targz -dnet:protocols @=@ dnet:protocols @=@ remoteMdstore 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@=@ 030221 ophthalmology & optometry +dnet:fos @=@ Fields of Science @=@ 030222 orthopedics @=@ 030222 orthopedics +dnet:fos @=@ Fields of Science @=@ 030223 otorhinolaryngology @=@ 030223 otorhinolaryngology +dnet:fos @=@ Fields of Science @=@ 030224 pathology @=@ 030224 pathology +dnet:fos @=@ Fields of Science @=@ 030225 pediatrics @=@ 030225 pediatrics +dnet:fos @=@ Fields of Science @=@ 030226 pharmacology & pharmacy @=@ 030226 pharmacology & pharmacy +dnet:fos @=@ Fields of Science @=@ 030227 psychiatry @=@ 030227 psychiatry +dnet:fos @=@ Fields of Science @=@ 030228 respiratory system @=@ 030228 respiratory system +dnet:fos @=@ Fields of Science @=@ 030229 sport sciences @=@ 030229 sport sciences +dnet:fos @=@ Fields of Science @=@ 030230 surgery @=@ 030230 surgery +dnet:fos @=@ Fields of Science @=@ 030231 tropical medicine @=@ 030231 tropical medicine +dnet:fos @=@ Fields of Science @=@ 030232 urology & nephrology @=@ 030232 urology & nephrology +dnet:fos @=@ Fields of Science @=@ 0303 health sciences @=@ 0303 health sciences +dnet:fos @=@ Fields of Science @=@ 030301 anatomy & morphology @=@ 030301 anatomy & morphology +dnet:fos @=@ Fields of Science @=@ 030302 biochemistry & molecular biology @=@ 030302 biochemistry & molecular biology +dnet:fos @=@ Fields of Science @=@ 030303 biophysics @=@ 030303 biophysics +dnet:fos @=@ Fields of Science @=@ 030304 developmental biology @=@ 030304 developmental biology +dnet:fos @=@ Fields of Science @=@ 030305 genetics & heredity @=@ 030305 genetics & heredity +dnet:fos @=@ Fields of Science @=@ 030306 microbiology @=@ 030306 microbiology +dnet:fos @=@ Fields of Science @=@ 030307 microscopy @=@ 030307 microscopy +dnet:fos @=@ Fields of Science @=@ 030308 mycology & parasitology @=@ 030308 mycology & parasitology +dnet:fos @=@ Fields of Science @=@ 030309 nutrition & dietetics @=@ 030309 nutrition & dietetics +dnet:fos @=@ Fields of Science @=@ 030310 physiology @=@ 030310 physiology +dnet:fos @=@ Fields of Science @=@ 030311 toxicology @=@ 030311 toxicology +dnet:fos @=@ Fields of Science @=@ 030312 virology @=@ 030312 virology +dnet:fos @=@ Fields of Science @=@ 0304 medical biotechnology @=@ 0304 medical biotechnology +dnet:fos @=@ Fields of Science @=@ 0305 other medical science @=@ 0305 other medical science +dnet:fos @=@ Fields of Science @=@ 030501 epidemiology @=@ 030501 epidemiology +dnet:fos @=@ Fields of Science @=@ 030502 gerontology @=@ 030502 gerontology +dnet:fos @=@ Fields of Science @=@ 030503 health policy & services @=@ 030503 health policy & services +dnet:fos @=@ Fields of Science @=@ 030504 nursing @=@ 030504 nursing +dnet:fos @=@ Fields of Science @=@ 030505 public health @=@ 030505 public health +dnet:fos @=@ Fields of Science @=@ 030506 rehabilitation @=@ 030506 rehabilitation +dnet:fos @=@ Fields of Science @=@ 030507 speech-language pathology & audiology @=@ 030507 speech-language pathology & audiology +dnet:fos @=@ Fields of Science @=@ 030508 substance abuse @=@ 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@=@ 0508 media and communications +dnet:fos @=@ Fields of Science @=@ 050801 communication & media studies @=@ 050801 communication & media studies +dnet:fos @=@ Fields of Science @=@ 0509 other social sciences @=@ 0509 other social sciences +dnet:fos @=@ Fields of Science @=@ 050901 criminology @=@ 050901 criminology +dnet:fos @=@ Fields of Science @=@ 050902 family studies @=@ 050902 family studies +dnet:fos @=@ Fields of Science @=@ 050903 gender studies @=@ 050903 gender studies +dnet:fos @=@ Fields of Science @=@ 050904 information & library sciences @=@ 050904 information & library sciences +dnet:fos @=@ Fields of Science @=@ 050905 science studies @=@ 050905 science studies +dnet:fos @=@ Fields of Science @=@ 050906 social work @=@ 050906 social work +dnet:fos @=@ Fields of Science @=@ 06 humanities and the arts @=@ 06 humanities and the arts +dnet:fos @=@ Fields of Science @=@ 0601 history and archaeology @=@ 0601 history and archaeology +dnet:fos @=@ Fields of Science @=@ 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Gentner Verlag GmbH & Co. KG @=@ Alfons W. Gentner Verlag GmbH & Co. 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Cyril and Methodius University, Faculty of Physical Education, Sport and Health +dnet:publishers @=@ dnet:publishers @=@ Review of the Faculty of Divinity of Amasya University @=@ Review of the Faculty of Divinity of Amasya University +dnet:publishers @=@ dnet:publishers @=@ Institute of Philosophy and Law SB RAS @=@ Institute of Philosophy and Law SB RAS +dnet:publishers @=@ dnet:publishers @=@ Siyasal Bilimler Dergisi @=@ Siyasal Bilimler Dergisi +dnet:publishers @=@ dnet:publishers @=@ Oregon Historical Society @=@ Oregon Historical Society +dnet:publishers @=@ dnet:publishers @=@ McFarland and Company, Inc., Publishers @=@ McFarland and Company, Inc., Publishers +dnet:publishers @=@ dnet:publishers @=@ Egitim Danismanligi ve Arastirmalari (EDAM) @=@ Egitim Danismanligi ve Arastirmalari (EDAM) +dnet:publishers @=@ dnet:publishers @=@ CABI Publishing @=@ CABI Publishing +dnet:publishers @=@ dnet:publishers @=@ Surface Science Society Japan @=@ Surface Science Society Japan +dnet:publishers @=@ dnet:publishers @=@ Cumhuriyet Universitesi Ilahiyat Fakultesi Dergisi @=@ Cumhuriyet Universitesi Ilahiyat Fakultesi Dergisi +dnet:publishers @=@ dnet:publishers @=@ Fakultas MIPA Universitas Negeri Makassar @=@ Fakultas MIPA Universitas Negeri Makassar +dnet:publishers @=@ dnet:publishers @=@ Association for Politics and the Life Sciences @=@ Association for Politics and the Life Sciences +dnet:publishers @=@ dnet:publishers @=@ Universidad San Francisco De Quito @=@ Universidad San Francisco De Quito +dnet:publishers @=@ dnet:publishers @=@ The Korean Orthopaedic Association @=@ The Korean Orthopaedic Association +dnet:publishers @=@ dnet:publishers @=@ SciPress Ltd @=@ SciPress Ltd +dnet:publishers @=@ dnet:publishers @=@ Inonu University Journal of the Faculty of Education @=@ Inonu University Journal of the Faculty of Education +dnet:publishers @=@ dnet:publishers @=@ Siree Journals @=@ Siree Journals +dnet:publishers @=@ dnet:publishers @=@ Siec Badawcza Lukasiewicz - Instytut Metalurgii Zelaza im. 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org.apache.spark.sql.SparkSession +import org.junit.jupiter.api.{BeforeEach, Test} +import org.junit.jupiter.api.extension.ExtendWith +import org.mockito.junit.jupiter.MockitoExtension +import org.slf4j.{Logger, LoggerFactory} + +import scala.io.Source + +@ExtendWith(Array(classOf[MockitoExtension])) +class CrossrefMappingTest extends AbstractVocabularyTest { + + val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass) + val mapper = new ObjectMapper() + + @BeforeEach + def setUp(): Unit = { + super.setUpVocabulary() + } + + @Test + def testMapping(): Unit = { + val spark = SparkSession.builder().master("local[*]").appName("TransformCrossref").getOrCreate() + + val s = new SparkMapDumpIntoOAF(null, null, null) + import spark.implicits._ + + s.transformCrossref( + spark, + sourcePath = "/home/sandro/Downloads/crossref", + targetPath = "/home/sandro/Downloads/crossref_transformed", + vocabularies = vocabularies + ) + + print(spark.read.text("/home/sandro/Downloads/crossref_transformed").count) + } + +} diff --git a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala index cbdafeb1e..d8292a631 100644 --- a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala +++ b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/Crossref2Oaf.scala @@ -1,4 +1,4 @@ - package eu.dnetlib.doiboost.crossref +package eu.dnetlib.doiboost.crossref import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup import eu.dnetlib.dhp.schema.common.ModelConstants @@ -48,16 +48,14 @@ case object Crossref2Oaf { json.extract[List[funderInfo]] } - def getIrishId(doi: String): Option[String] = { + def getIrishId(doi: String): Option[String] = { val id = doi.split("/").last irishFunder .find(f => id.equalsIgnoreCase(f.id) || (f.synonym.nonEmpty && f.synonym.exists(s => s.equalsIgnoreCase(id)))) .map(f => f.id) } - - - def mappingResult(result: Result, json: JValue, instanceType:Qualifier, originalType: String): Result = { + def mappingResult(result: Result, json: JValue, instanceType: Qualifier, originalType: String): Result = { implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats //MAPPING Crossref DOI into PID @@ -298,22 +296,22 @@ case object Crossref2Oaf { } /** * - * Use the vocabulary dnet:publication_resource to find a synonym to one of these terms and get the instance.type. - * Using the dnet:result_typologies vocabulary, we look up the instance.type synonym - * to generate one of the following main entities: - * - publication - * - dataset - * - software - * - otherresearchproduct - * - * @param resourceType - * @param vocabularies - * @return - */ + * Use the vocabulary dnet:publication_resource to find a synonym to one of these terms and get the instance.type. + * Using the dnet:result_typologies vocabulary, we look up the instance.type synonym + * to generate one of the following main entities: + * - publication + * - dataset + * - software + * - otherresearchproduct + * + * @param resourceType + * @param vocabularies + * @return + */ def getTypeQualifier( - resourceType: String, - vocabularies: VocabularyGroup - ): (Qualifier, Qualifier, String) = { + resourceType: String, + vocabularies: VocabularyGroup + ): (Qualifier, Qualifier, String) = { if (resourceType != null && resourceType.nonEmpty) { val typeQualifier = vocabularies.getSynonymAsQualifier(ModelConstants.DNET_PUBLICATION_RESOURCE, resourceType) @@ -340,7 +338,7 @@ case object Crossref2Oaf { val objectSubType = (json \ "subtype").extractOrElse[String](null) if (objectType == null) return resultList - val typology =getTypeQualifier(objectType, vocabularies) + val typology = getTypeQualifier(objectType, vocabularies) if (typology == null) return List() @@ -349,7 +347,6 @@ case object Crossref2Oaf { if (result == null) return List() - mappingResult(result, json, typology._1, typology._3) if (result == null || result.getId == null) return List() @@ -693,12 +690,11 @@ case object Crossref2Oaf { val item = new Dataset item.setResourcetype(objectType) return item - } - else if (objectType.getClassid.equalsIgnoreCase("software")){ + } else if (objectType.getClassid.equalsIgnoreCase("software")) { val item = new Software item.setResourcetype(objectType) return item - }else if (objectType.getClassid.equalsIgnoreCase("OtherResearchProduct")){ + } else if (objectType.getClassid.equalsIgnoreCase("OtherResearchProduct")) { val item = new OtherResearchProduct item.setResourcetype(objectType) return item diff --git a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala index 5b2801289..eced5aa57 100644 --- a/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala +++ b/dhp-workflows/dhp-doiboost/src/main/scala/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala @@ -48,7 +48,6 @@ object SparkMapDumpIntoOAF { val vocabularies = VocabularyGroup.loadVocsFromIS(isLookupService) require(vocabularies != null) - spark.read .load(parser.get("sourcePath")) .as[CrossrefDT] diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/dhp/aggregation/AbstractVocabularyTest.java b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/dhp/aggregation/AbstractVocabularyTest.java index ee1ec95eb..ee486951e 100644 --- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/dhp/aggregation/AbstractVocabularyTest.java +++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/dhp/aggregation/AbstractVocabularyTest.java @@ -17,35 +17,34 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService; public abstract class AbstractVocabularyTest { - @Mock - protected ISLookUpService isLookUpService; + @Mock + protected ISLookUpService isLookUpService; - protected VocabularyGroup vocabularies; + protected VocabularyGroup vocabularies; - public void setUpVocabulary() throws ISLookUpException, IOException { - lenient().when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARIES_XQUERY)).thenReturn(vocs()); + public void setUpVocabulary() throws ISLookUpException, IOException { + lenient().when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARIES_XQUERY)).thenReturn(vocs()); - lenient() - .when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARY_SYNONYMS_XQUERY)) - .thenReturn(synonyms()); - vocabularies = VocabularyGroup.loadVocsFromIS(isLookUpService); - } + lenient() + .when(isLookUpService.quickSearchProfile(VocabularyGroup.VOCABULARY_SYNONYMS_XQUERY)) + .thenReturn(synonyms()); + vocabularies = VocabularyGroup.loadVocsFromIS(isLookUpService); + } - private static List vocs() throws IOException { - return IOUtils - .readLines( - Objects - .requireNonNull( - AbstractVocabularyTest.class.getResourceAsStream("/eu/dnetlib/dhp/doiboost/terms.txt"))); - } - - private static List synonyms() throws IOException { - return IOUtils - .readLines( - Objects - .requireNonNull( - AbstractVocabularyTest.class.getResourceAsStream("/eu/dnetlib/dhp/doiboost/synonyms.txt"))); - } + private static List vocs() throws IOException { + return IOUtils + .readLines( + Objects + .requireNonNull( + AbstractVocabularyTest.class.getResourceAsStream("/eu/dnetlib/dhp/doiboost/terms.txt"))); + } + private static List synonyms() throws IOException { + return IOUtils + .readLines( + Objects + .requireNonNull( + AbstractVocabularyTest.class.getResourceAsStream("/eu/dnetlib/dhp/doiboost/synonyms.txt"))); + } } diff --git a/dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/crossref/CrossrefMappingTest.scala b/dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/crossref/CrossrefMappingTest.scala index 5835b5aea..8e0564cb5 100644 --- a/dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/crossref/CrossrefMappingTest.scala +++ b/dhp-workflows/dhp-doiboost/src/test/scala/eu/dnetlib/dhp/doiboost/crossref/CrossrefMappingTest.scala @@ -23,7 +23,7 @@ import scala.io.Source import scala.util.matching.Regex @ExtendWith(Array(classOf[MockitoExtension])) -class CrossrefMappingTest extends AbstractVocabularyTest{ +class CrossrefMappingTest extends AbstractVocabularyTest { val logger: Logger = LoggerFactory.getLogger(Crossref2Oaf.getClass) val mapper = new ObjectMapper() @@ -34,10 +34,15 @@ class CrossrefMappingTest extends AbstractVocabularyTest{ } @Test - def testMissingAuthorParser():Unit = { - val json: String = Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/doiboost/crossref/s41567-022-01757-y.json")).mkString + def testMissingAuthorParser(): Unit = { + val json: String = Source + .fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/doiboost/crossref/s41567-022-01757-y.json")) + .mkString val result = Crossref2Oaf.convert(json, vocabularies) - result.filter(o => o.isInstanceOf[Publication]).map(p=> p.asInstanceOf[Publication]).foreach(p =>assertTrue(p.getAuthor.size()>0)) + result + .filter(o => o.isInstanceOf[Publication]) + .map(p => p.asInstanceOf[Publication]) + .foreach(p => assertTrue(p.getAuthor.size() > 0)) } @Test @@ -127,7 +132,6 @@ class CrossrefMappingTest extends AbstractVocabularyTest{ val items = resultList.filter(p => p.isInstanceOf[Result]) - items.foreach(p => println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(p))) } @@ -169,7 +173,6 @@ class CrossrefMappingTest extends AbstractVocabularyTest{ assertEquals(doisReference.size, relationList.size) - relationList.foreach(p => println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(p))) } @@ -190,7 +193,6 @@ class CrossrefMappingTest extends AbstractVocabularyTest{ val items = resultList.filter(p => p.isInstanceOf[Result]) - items.foreach(p => println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(p))) } @@ -646,7 +648,6 @@ class CrossrefMappingTest extends AbstractVocabularyTest{ val item: Result = resultList.filter(p => p.isInstanceOf[Result]).head.asInstanceOf[Result] - println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(item)) assertTrue(