forked from D-Net/dnet-hadoop
[FOSNEW] removed test class
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package eu.dnetlib.dhp.actionmanager.fosnodoi;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.hadoop.io.Text;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.Dataset;
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import org.apache.spark.sql.Encoders;
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import org.apache.spark.sql.Row;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.schema.action.AtomicAction;
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import eu.dnetlib.dhp.schema.oaf.OafEntity;
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public class CreateActionSetSparkJobTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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private static final Logger log = LoggerFactory.getLogger(CreateActionSetSparkJobTest.class);
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(CreateActionSetSparkJobTest.class.getSimpleName());
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log.info("using work dir {}", workingDir);
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SparkConf conf = new SparkConf();
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conf.setAppName(CreateActionSetSparkJobTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(CreateActionSetSparkJobTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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private void runJob(String resultsInputPath, String outputPath) throws Exception {
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CreateActionSetSparkJob
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.main(
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new String[] {
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"-isSparkSessionManaged", Boolean.FALSE.toString(),
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"-sourcePath", resultsInputPath,
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"-outputPath", outputPath,
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});
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}
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@Test
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void testScores() throws Exception {
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String resultsInputPath = getClass()
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.getResource("/eu/dnetlib/dhp/actionmanager/fosnodoi/results.json")
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.getPath();
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String outputPath = workingDir.toString() + "/actionSet";
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// execute the job to generate the action sets for result scores
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runJob(resultsInputPath, outputPath);
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final JavaSparkContext sc = new JavaSparkContext(spark.sparkContext());
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sc
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.sequenceFile(outputPath, Text.class, Text.class)
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.foreach(t -> System.out.println(new ObjectMapper().writeValueAsString(t)));
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}
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void assertResultImpactScores(Dataset<Row> testDataset) {
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Assertions
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.assertEquals(
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"6.63451994567e-09", testDataset
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.filter(
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"oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " +
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"and id = 'influence'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"0.348694533145", testDataset
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.filter(
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"oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " +
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"and id = 'popularity_alt'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"2.16094680115e-09", testDataset
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.filter(
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"oaid='50|arXiv_dedup_::4a2d5fd8d71daec016c176ec71d957b1' " +
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"and id = 'popularity'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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}
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void assertProjectImpactScores(Dataset<Row> testDataset) throws Exception {
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Assertions
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.assertEquals(
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"0", testDataset
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.filter(
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"oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " +
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"and id = 'numOfInfluentialResults'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"1", testDataset
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.filter(
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"oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " +
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"and id = 'numOfPopularResults'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"25", testDataset
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.filter(
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"oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " +
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"and id = 'totalImpulse'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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Assertions
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.assertEquals(
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"43", testDataset
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.filter(
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"oaid='40|nih_________::c02a8233e9b60f05bb418f0c9b714833' " +
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"and id = 'totalCitationCount'")
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.select("value")
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.collectAsList()
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.get(0)
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.getString(0));
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}
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}
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