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Added new class to move the place the split is effectively run

This commit is contained in:
Miriam Baglioni 2020-07-29 16:46:50 +02:00
parent 178c2729a7
commit 3ec2392904
1 changed files with 76 additions and 0 deletions

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package eu.dnetlib.dhp.oa.graph.dump.community;
import eu.dnetlib.dhp.oa.graph.dump.Utils;
import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
import org.apache.spark.SparkConf;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import java.io.Serializable;
import java.util.Objects;
import java.util.Optional;
import java.util.Set;
import java.util.stream.Collectors;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
public class CommunitySplit implements Serializable {
public void run(Boolean isSparkSessionManaged, String inputPath, String outputPath, CommunityMap communityMap) {
SparkConf conf = new SparkConf();
runWithSparkSession(
conf,
isSparkSessionManaged,
spark -> {
Utils.removeOutputDir(spark, outputPath);
execSplit(spark, inputPath, outputPath, communityMap.keySet());// , inputClazz);
});
}
private static void execSplit(SparkSession spark, String inputPath, String outputPath,
Set<String> communities) {// }, Class<R> inputClazz) {
Dataset<CommunityResult> result = Utils
.readPath(spark, inputPath + "/publication", CommunityResult.class)
.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
.union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class))
.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
communities
.stream()
.forEach(c -> printResult(c, result, outputPath));
}
private static void printResult(String c, Dataset<CommunityResult> result, String outputPath) {
Dataset<CommunityResult> community_products = result
.filter(r -> containsCommunity(r, c));
try{
community_products.first();
community_products
.repartition(1)
.write()
.option("compression", "gzip")
.mode(SaveMode.Overwrite)
.json(outputPath + "/" + c);
}catch(Exception e){
}
}
private static boolean containsCommunity(CommunityResult r, String c) {
if (Optional.ofNullable(r.getContext()).isPresent()) {
return r
.getContext()
.stream()
.filter(con -> con.getCode().equals(c))
.collect(Collectors.toList())
.size() > 0;
}
return false;
}
}