diff --git a/dhp-workflows/dhp-stats-update/pom.xml b/dhp-workflows/dhp-stats-update/pom.xml new file mode 100644 index 000000000..6a22f2f7b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/pom.xml @@ -0,0 +1,31 @@ + + + + dhp-workflows + eu.dnetlib.dhp + 1.1.6-SNAPSHOT + + 4.0.0 + dhp-statistics-workflow + + + org.apache.spark + spark-core_2.11 + + + org.apache.spark + spark-sql_2.11 + + + + + + pl.project13.maven + git-commit-id-plugin + + false + + + + + diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/config-default.xml b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/config-default.xml new file mode 100644 index 000000000..e2953693f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/config-default.xml @@ -0,0 +1,30 @@ + + + jobTracker + ${jobTracker} + + + nameNode + ${nameNode} + + + oozie.use.system.libpath + true + + + oozie.action.sharelib.for.spark + spark2 + + + hive_metastore_uris + thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083 + + + hive_jdbc_url + jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000 + + + oozie.wf.workflow.notification.url + {serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status + + diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step1.sql new file mode 100644 index 000000000..ec8a0e4ff --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step1.sql @@ -0,0 +1,11 @@ +-- DROP database if EXISTS ${hive_db_name} cascade; +-- CREATE database ${hive_db_name}; +-- +-- CREATE TABLE ${hive_db_name}.Persons ( +-- PersonID int, +-- LastName varchar(255)); +-- +-- INSERT INTO ${hive_db_name}.Persons VALUES (1, "test_db_spyros_rec_111"); + +DROP database IF EXISTS ${stats_db_name} CASCADE; +CREATE database ${stats_db_name}; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_1.sql new file mode 100644 index 000000000..568148753 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_1.sql @@ -0,0 +1,7 @@ +---------------------------------------------------------------- +---------------------------------------------------------------- +-- Organization table/view and Organization related tables/views +---------------------------------------------------------------- +---------------------------------------------------------------- +DROP TABLE IF EXISTS ${stats_db_name}.organization; +CREATE TABLE ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.country.classid as country from ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_2.sql new file mode 100644 index 000000000..4937c8425 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_2.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_3.sql new file mode 100644 index 000000000..768cf2a6e --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step10_3.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step11.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step11.sql new file mode 100644 index 000000000..145be77b0 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step11.sql @@ -0,0 +1,10 @@ +------------------------------------------------------------------------------------------------ +------------------------------------------------------------------------------------------------ +-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture) +------------------------------------------------------------------------------------------------ +------------------------------------------------------------------------------------------------ +CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref; +CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country; +CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp; +CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap; +CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_1.sql new file mode 100644 index 000000000..c1ec8873a --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_1.sql @@ -0,0 +1,6 @@ +---------------------------- +-- Post processing - Updates +---------------------------- + +--Datasource temporary table updates +UPDATE ${stats_db_name}.datasource_tmp set harvested ='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd where d.id=rd.datasource); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_2.sql new file mode 100644 index 000000000..b772bc374 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_2.sql @@ -0,0 +1,2 @@ +-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables +UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_3.sql new file mode 100644 index 000000000..b5e942ed6 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_3.sql @@ -0,0 +1,20 @@ +DROP TABLE IF EXISTS ${stats_db_name}.project; + +CREATE TABLE ${stats_db_name}.project stored as parquet as +SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration, +CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END as haspubs, +CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END as numpubs, +CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END as daysforlastpub, +CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END as delayedpubs, +p.callidentifier, p.code +FROM ${stats_db_name}.project_tmp p +LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np + FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id + WHERE r.type='publication' + GROUP BY pr.id) AS prr1 on prr1.id = p.id +LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) as daysForlastPub , count(distinct r.id) as dp + FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r + WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0 + GROUP BY pp.id) AS prr2 + on prr2.id = p.id; + \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_4.sql new file mode 100644 index 000000000..2fab61e8d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_4.sql @@ -0,0 +1,2 @@ +-- Publication temporary table updates +UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_5.sql new file mode 100644 index 000000000..3c7ee35de --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_5.sql @@ -0,0 +1,2 @@ +-- Dataset temporary table updates +UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_6.sql new file mode 100644 index 000000000..5d38693bc --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_6.sql @@ -0,0 +1,2 @@ +-- Software temporary table updates +UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_7.sql new file mode 100644 index 000000000..4a5d4ce61 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_7.sql @@ -0,0 +1,2 @@ +-- Oherresearchproduct temporary table updates +UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_8.sql new file mode 100644 index 000000000..ad375bf3f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step12_8.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend as daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id and result.type='publication' and project.id=result_projects.project; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step13.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step13.sql new file mode 100644 index 000000000..f68ccab64 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step13.sql @@ -0,0 +1,26 @@ +------------------------------------------------------------------------------------------------------ +-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables +------------------------------------------------------------------------------------------------------ + +DROP TABLE IF EXISTS ${stats_db_name}.datasource; +CREATE TABLE ${stats_db_name}.datasource stored as parquet as select * from ${stats_db_name}.datasource_tmp; + +DROP TABLE IF EXISTS ${stats_db_name}.publication; +CREATE TABLE ${stats_db_name}.publication stored as parquet as select * from ${stats_db_name}.publication_tmp; + +DROP TABLE IF EXISTS ${stats_db_name}.dataset; +CREATE TABLE ${stats_db_name}.dataset stored as parquet as select * from ${stats_db_name}.dataset_tmp; + +DROP TABLE IF EXISTS ${stats_db_name}.software; +CREATE TABLE ${stats_db_name}.software stored as parquet as select * from ${stats_db_name}.software_tmp; + +DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct; +CREATE TABLE ${stats_db_name}.otherresearchproduct stored as parquet as select * from ${stats_db_name}.otherresearchproduct_tmp; + +DROP TABLE ${stats_db_name}.project_tmp; +DROP TABLE ${stats_db_name}.datasource_tmp; +DROP TABLE ${stats_db_name}.publication_tmp; +DROP TABLE ${stats_db_name}.dataset_tmp; +DROP TABLE ${stats_db_name}.software_tmp; +DROP TABLE ${stats_db_name}.otherresearchproduct_tmp; + diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step14.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step14.sql new file mode 100644 index 000000000..24e9e3107 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step14.sql @@ -0,0 +1,7 @@ +---------------------------------------------- +-- Re-creating views from final parquet tables +--------------------------------------------- + +-- Result +CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct; + diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_1.sql new file mode 100644 index 000000000..d20bb73e2 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_1.sql @@ -0,0 +1,10 @@ +-------------------------------------------------------------- +-------------------------------------------------------------- +-- 2. Publication table/view and Publication related tables/views +-------------------------------------------------------------- +-------------------------------------------------------------- + +-- Publication temporary table +DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp; + +CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_2.sql new file mode 100644 index 000000000..1c67596db --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_2.sql @@ -0,0 +1,19 @@ +-- The following throws the following exception on CRN HUE Hive: +-- Error while compiling statement: FAILED: SemanticException [Error 10011]: Line 2:34 Invalid function 'date_format' +-- But runs OK on OCEAN HUE Hive + +INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal , +p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence, +p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source, +case when size(p.description) > 0 then true else false end as abstract, +'publication' as type +from ${openaire_db_name}.publication p +where p.datainfo.deletedbyinference=false; + +-- INSERT INTO ${hive_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal, +-- p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence, +-- p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source, +-- case when size(p.description) > 0 then true else false end as abstract, +-- 'publication' as type +-- from openaire.publication p +-- where p.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_3.sql new file mode 100644 index 000000000..bf0e85550 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_3.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_4.sql new file mode 100644 index 000000000..a38bcf62d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_4.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_5.sql new file mode 100644 index 000000000..299833452 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_5.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.publication_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN (SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_6.sql new file mode 100644 index 000000000..fd4dbe05c --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_6.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.publication p; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_7.sql new file mode 100644 index 000000000..24cd59670 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_7.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_8.sql new file mode 100644 index 000000000..1ddb2bd3b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_8.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.publication_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.publication p lateral view explode(p.pid) pids as ppid; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_9.sql new file mode 100644 index 000000000..5507eeb7a --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step2_9.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.publication_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.publication p lateral view explode(p.subject) subjects as subject; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step3.sql new file mode 100644 index 000000000..567b94994 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step3.sql @@ -0,0 +1,2 @@ +-- 3. Publication_citations +CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_1.sql new file mode 100644 index 000000000..3668059a6 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_1.sql @@ -0,0 +1,9 @@ +------------------------------------------------------ +------------------------------------------------------ +-- 4. Dataset table/view and Dataset related tables/views +------------------------------------------------------ +------------------------------------------------------ + +-- Dataset temporary table supporting updates +DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp; +CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_10.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_10.sql new file mode 100644 index 000000000..85a8eac7f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_10.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.dataset_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.dataset p lateral view explode(p.subject) subjects as subject; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_2.sql new file mode 100644 index 000000000..3c8bb7c0f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_2.sql @@ -0,0 +1,7 @@ +INSERT INTO ${stats_db_name}.dataset_tmp select substr(d.id, 4) as id, d.title[0].value as title, d.publisher.value as publisher, cast(null as string) as journal, +d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') as year, d.bestaccessright.classname as bestlicence, +d.embargoenddate.value as embargo_end_date, false as delayed, size(d.author) as authors , concat_ws('\u003B',d.source.value) as source, + case when size(d.description) > 0 then true else false end as abstract, +'dataset' as type +from ${openaire_db_name}.dataset d +where d.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_3.sql new file mode 100644 index 000000000..54e23621a --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_3.sql @@ -0,0 +1,2 @@ +-- Dataset_citations +Create table ${stats_db_name}.dataset_citations as select substr(d.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.dataset d lateral view explode(d.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_4.sql new file mode 100644 index 000000000..7bc81c7f8 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_4.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_5.sql new file mode 100644 index 000000000..73aff989d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_5.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_6.sql new file mode 100644 index 000000000..1ca686f70 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_6.sql @@ -0,0 +1,3 @@ +CREATE TABLE ${stats_db_name}.dataset_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource +from ${openaire_db_name}.dataset p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN +(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_7.sql new file mode 100644 index 000000000..70c0b3e4f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_7.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.dataset_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.dataset p; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_8.sql new file mode 100644 index 000000000..c750ad00b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_8.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_9.sql new file mode 100644 index 000000000..1d9f4c596 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step4_9.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.dataset_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.dataset p lateral view explode(p.pid) pids as ppid; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_1.sql new file mode 100644 index 000000000..89f869760 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_1.sql @@ -0,0 +1,9 @@ +-------------------------------------------------------- +-------------------------------------------------------- +-- 5. Software table/view and Software related tables/views +-------------------------------------------------------- +-------------------------------------------------------- + +-- Software temporary table supporting updates +DROP TABLE IF EXISTS ${stats_db_name}.software_tmp; +CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_10.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_10.sql new file mode 100644 index 000000000..acc70958b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_10.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.software_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.software p lateral view explode(p.subject) subjects as subject; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_2.sql new file mode 100644 index 000000000..4a3f10c64 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_2.sql @@ -0,0 +1,7 @@ +INSERT INTO ${stats_db_name}.software_tmp select substr(s.id, 4) as id, s.title[0].value as title, s.publisher.value as publisher, cast(null as string) as journal, +s.dateofacceptance.value as date, date_format(s.dateofacceptance.value,'yyyy') as year, s.bestaccessright.classname as bestlicence, +s.embargoenddate.value as embargo_end_date, false as delayed, size(s.author) as authors , concat_ws('\u003B',s.source.value) as source, + case when size(s.description) > 0 then true else false end as abstract, +'software' as type +from ${openaire_db_name}.software s +where s.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_3.sql new file mode 100644 index 000000000..f8073a583 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_3.sql @@ -0,0 +1,2 @@ +-- Software_citations +Create table ${stats_db_name}.software_citations as select substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.software s lateral view explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_4.sql new file mode 100644 index 000000000..b340cfc24 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_4.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_5.sql new file mode 100644 index 000000000..d2b0f3d1d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_5.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts as context; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_6.sql new file mode 100644 index 000000000..dfe32075b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_6.sql @@ -0,0 +1,3 @@ +CREATE TABLE ${stats_db_name}.software_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource +from ${openaire_db_name}.software p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN +(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_7.sql new file mode 100644 index 000000000..0fdb0fab3 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_7.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.software p; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_8.sql new file mode 100644 index 000000000..79c4b313d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_8.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_9.sql new file mode 100644 index 000000000..a8aaa5d83 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step5_9.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.software_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.software p lateral view explode(p.pid) pids as ppid; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_1.sql new file mode 100644 index 000000000..4e59465fa --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_1.sql @@ -0,0 +1,9 @@ +-------------------------------------------------------------------------------- +-------------------------------------------------------------------------------- +-- 6. Otherresearchproduct table/view and Otherresearchproduct related tables/views +-------------------------------------------------------------------------------- +-------------------------------------------------------------------------------- + +-- Otherresearchproduct temporary table supporting updates +DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp; +CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_10.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_10.sql new file mode 100644 index 000000000..e2e788634 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_10.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.otherresearchproduct_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.subject) subjects as subject; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_2.sql new file mode 100644 index 000000000..7c7ed370d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_2.sql @@ -0,0 +1,7 @@ +INSERT INTO ${stats_db_name}.otherresearchproduct_tmp select substr(o.id, 4) as id, o.title[0].value as title, o.publisher.value as publisher, cast(null as string) as journal, +o.dateofacceptance.value as date, date_format(o.dateofacceptance.value,'yyyy') as year, o.bestaccessright.classname as bestlicence, +o.embargoenddate.value as embargo_end_date, false as delayed, size(o.author) as authors , concat_ws('\u003B',o.source.value) as source, +case when size(o.description) > 0 then true else false end as abstract, +'other' as type +from ${openaire_db_name}.otherresearchproduct o +where o.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_3.sql new file mode 100644 index 000000000..c6b9255df --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_3.sql @@ -0,0 +1,2 @@ +-- Otherresearchproduct_citations +Create table ${stats_db_name}.otherresearchproduct_citations as select substr(o.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.otherresearchproduct o lateral view explode(o.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !=""; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_4.sql new file mode 100644 index 000000000..0a93764b6 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_4.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_5.sql new file mode 100644 index 000000000..a37f2f25e --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_5.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts as context; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_6.sql new file mode 100644 index 000000000..b7aa69e9a --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_6.sql @@ -0,0 +1,3 @@ +CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource +from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN +(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_7.sql new file mode 100644 index 000000000..ba9208cf6 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_7.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.otherresearchproduct p; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_8.sql new file mode 100644 index 000000000..4f2c5c3bb --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_8.sql @@ -0,0 +1 @@ +CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_9.sql new file mode 100644 index 000000000..4ab11adfe --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step6_9.sql @@ -0,0 +1 @@ +create table ${stats_db_name}.otherresearchproduct_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.pid) pids as ppid; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_1.sql new file mode 100644 index 000000000..0c775452d --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_1.sql @@ -0,0 +1,8 @@ +------------------------------------------------------ +------------------------------------------------------ +-- 7. Project table/view and Project related tables/views +------------------------------------------------------ +------------------------------------------------------ +-- Project_oids Table +DROP TABLE IF EXISTS ${stats_db_name}.project_oids; +CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_2.sql new file mode 100644 index 000000000..27770c390 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_2.sql @@ -0,0 +1,3 @@ +-- Project_organizations Table +DROP TABLE IF EXISTS ${stats_db_name}.project_organizations; +CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) as id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_3.sql new file mode 100644 index 000000000..fcefd7dcc --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_3.sql @@ -0,0 +1,3 @@ +-- Project_results Table +DROP TABLE IF EXISTS ${stats_db_name}.project_results; +CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) as id, substr(r.source, 4) AS result from ${openaire_db_name}.relation r WHERE r.reltype='resultProject'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_4.sql new file mode 100644 index 000000000..a80573765 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_4.sql @@ -0,0 +1,5 @@ +-- Project table +---------------- +-- Creating and populating temporary Project table +DROP TABLE IF EXISTS ${stats_db_name}.project_tmp; +CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_5.sql new file mode 100644 index 000000000..c633d9177 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step7_5.sql @@ -0,0 +1 @@ +INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) as id, p.acronym.value as acronym, p.title.value as title, xpath_string(p.fundingtree[0].value, '//funder/name') as funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2, p.ecsc39.value as ec39, p.contracttype.classname as type, p.startdate.value as startdate, p.enddate.value as enddate, date_format(p.startdate.value, 'yyyy') as start_year, date_format(p.enddate.value, 'yyyy') as end_year, 0 as duration, 'no' as haspubs, 0 as numpubs, 0 as daysforlastpub, 0 as delayedpubs, p.callidentifier.value as callidentifier, p.code.value as code from ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_1.sql new file mode 100644 index 000000000..e855e59ff --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_1.sql @@ -0,0 +1,8 @@ +---------------------------------------------------- +---------------------------------------------------- +-- 8. Result table/view and Result related tables/views +---------------------------------------------------- +---------------------------------------------------- + +-- Views on temporary tables that should be re-created in the end +CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct_tmp; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_10.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_10.sql new file mode 100644 index 000000000..c9ad0760f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_10.sql @@ -0,0 +1,2 @@ +DROP TABLE IF EXISTS ${stats_db_name}.result_organization; +CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='resultOrganization'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_11.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_11.sql new file mode 100644 index 000000000..a2c0d85be --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_11.sql @@ -0,0 +1,2 @@ +DROP TABLE IF EXISTS ${stats_db_name}.result_projects; +CREATE TABLE ${stats_db_name}.result_projects AS select pr.result as id, pr.id as project, datediff(p.enddate, p.startdate) as daysfromend from ${stats_db_name}.result r join ${stats_db_name}.project_results pr on r.id=pr.result join ${stats_db_name}.project_tmp p on p.id=pr.id; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_2.sql new file mode 100644 index 000000000..94a230d21 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_2.sql @@ -0,0 +1,2 @@ +-- Views on final tables +CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources as SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_3.sql new file mode 100644 index 000000000..3d61dc8fa --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_3.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_citations as SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_4.sql new file mode 100644 index 000000000..c27c9964f --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_4.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications as SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_5.sql new file mode 100644 index 000000000..1f81adb73 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_5.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts as SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts; \ No newline at end of file diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_6.sql new file mode 100644 index 000000000..2ea29f2f3 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_6.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_languages as SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_7.sql new file mode 100644 index 000000000..b4e69d413 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_7.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_oids as SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_8.sql new file mode 100644 index 000000000..36e753f5c --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_8.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_pids as SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_9.sql new file mode 100644 index 000000000..075ab266b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step8_9.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.result_topics as SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_1.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_1.sql new file mode 100644 index 000000000..c2274d2e0 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_1.sql @@ -0,0 +1,10 @@ +------------------------------------------------------------ +------------------------------------------------------------ +-- 9. Datasource table/view and Datasource related tables/views +------------------------------------------------------------ +------------------------------------------------------------ +-- Datasource table creation & update +------------------------------------- +-- Creating and populating temporary datasource table +DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp; +create table ${stats_db_name}.datasource_tmp(`id` string, `name` string, `type` string, `dateofvalidation` string, `yearofvalidation` string, `harvested` boolean, `piwik_id` int, `latitude` string, `longitude` string, `websiteurl` string, `compatibility` string) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true'); diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_2.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_2.sql new file mode 100644 index 000000000..fd89e0d5b --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_2.sql @@ -0,0 +1,3 @@ +insert into ${stats_db_name}.datasource_tmp SELECT substr(d.id, 4) as id, officialname.value as name, datasourcetype.classname as type, dateofvalidation.value as dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') as yearofvalidation, false as harvested, 0 as piwik_id, d.latitude.value as latitude, d.longitude.value as longitude, d.websiteurl.value as websiteurl, d.openairecompatibility.classid as compatibility +from ${openaire_db_name}.datasource d +WHERE d.datainfo.deletedbyinference=false; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_3.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_3.sql new file mode 100644 index 000000000..2266bc724 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_3.sql @@ -0,0 +1,7 @@ +-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table. To see if default values are there +-- Creating a temporary dual table that will be removed after the following insert +CREATE TABLE ${stats_db_name}.dual(dummy char(1)); +INSERT INTO ${stats_db_name}.dual values('X'); +INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`) +SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository'); +DROP TABLE ${stats_db_name}.dual; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_4.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_4.sql new file mode 100644 index 000000000..dd5f9b314 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_4.sql @@ -0,0 +1 @@ +UPDATE ${stats_db_name}.datasource_tmp SET name='Other' where name='Unknown Repository'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_5.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_5.sql new file mode 100644 index 000000000..77ee81b04 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_5.sql @@ -0,0 +1 @@ +UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_6.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_6.sql new file mode 100644 index 000000000..d4ca2e10e --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_6.sql @@ -0,0 +1,2 @@ +DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages; +CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) as id, langs.languages as language from openaire.datasource d LATERAL VIEW explode(d.odlanguages.value) langs as languages; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_7.sql new file mode 100644 index 000000000..194633cb7 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_7.sql @@ -0,0 +1,2 @@ +DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids; +CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) as id, oids.ids as oid from ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids as ids; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_8.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_8.sql new file mode 100644 index 000000000..c25858d2c --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_8.sql @@ -0,0 +1,2 @@ +DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations; +CREATE TABLE ${stats_db_name}.datasource_organizations AS select substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='datasourceOrganization'; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_9.sql b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_9.sql new file mode 100644 index 000000000..ec4aa0569 --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/scripts/step9_9.sql @@ -0,0 +1 @@ +CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources; diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/workflow.xml b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/workflow.xml new file mode 100644 index 000000000..40f4b14ba --- /dev/null +++ b/dhp-workflows/dhp-stats-update/src/main/resources/graph/oozie_app/workflow.xml @@ -0,0 +1,1479 @@ + + + + stats_db_name + the target stats database name + + + openaire_db_name + the original graph database name + + + external_stats_db_name + the external stats that should be added since they are not included in the graph database + + + + + + + Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}] + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + external_stats_db_name=${external_stats_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + + ${jobTracker} + ${nameNode} + + + hive.metastore.uris + ${hive_metastore_uris} + + + ${hive_jdbc_url} + + stats_db_name=${stats_db_name} + openaire_db_name=${openaire_db_name} + + + + + + + diff --git a/dhp-workflows/pom.xml b/dhp-workflows/pom.xml index 4b5fb4b4f..312826dac 100644 --- a/dhp-workflows/pom.xml +++ b/dhp-workflows/pom.xml @@ -21,6 +21,7 @@ dhp-graph-provision dhp-dedup-scholexplorer dhp-graph-provision-scholexplorer + dhp-stats-update