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anticipated execution of the graph cleaning workflow

This commit is contained in:
Claudio Atzori 2020-10-30 15:46:55 +01:00
parent 4ca75d6951
commit 04ad8969b2
1 changed files with 53 additions and 13 deletions
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66
dhp-workflows/dhp-workflow-profiles/src/main/resources/eu/dnetlib/dhp/wf/profiles/graph_prod_construction.xml
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@ -44,6 +44,7 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setRawGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setRawGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the RAW graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the RAW graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
@ -54,31 +55,45 @@
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setFirstCleanedGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the first CLEANED graph</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">firstCleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/prod_provision/graph/02_graph_first_cleaned</PARAM>
</PARAMETERS>
<ARCS>
<ARC to="waitConfig"/>
</ARCS>
</NODE>
<NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setDedupGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the DEDUPED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">dedupGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/02_graph_dedup</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/03_graph_dedup</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setInferredGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setInferredGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the INFERRED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">inferredGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/03_graph_inferred</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/04_graph_inferred</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
</ARCS> </ARCS>
</NODE> </NODE>
<NODE isStart="true" name="setConsistentGraphPath" type="SetEnvParameter"> <NODE isStart="true" name="setConsistentGraphPath" type="SetEnvParameter">
<DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the CONSISTENCY graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">consistentGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/04_graph_consistent</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_consistent</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -89,7 +104,7 @@
<DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the ORCID enriched graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">orcidGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/05_graph_orcid</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_orcid</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -100,7 +115,7 @@
<DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the BULK TAGGED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">bulkTaggingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/06_graph_bulktagging</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_bulktagging</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -111,7 +126,7 @@
<DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the AFFILIATION from INSTITUTIONAL REPOS graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">affiliationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/07_graph_affiliation</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_affiliation</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -122,7 +137,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COMMUNITY from SELECTED SOURCES graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">communityOrganizationGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/08_graph_comunity_organization</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_comunity_organization</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -133,7 +148,7 @@
<DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the FUNDING from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">fundingGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/09_graph_funding</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_funding</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -144,7 +159,7 @@
<DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COMMUNITY from SEMANTIC RELATION graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">communitySemRelGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/10_graph_comunity_sem_rel</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_comunity_sem_rel</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -155,7 +170,7 @@
<DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the COUNTRY enriched graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">countryGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/11_graph_country</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_country</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -166,7 +181,7 @@
<DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the CLEANED graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">cleanedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/12_graph_cleaned</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/13_graph_cleaned</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -177,7 +192,7 @@
<DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION> <DESCRIPTION>Set the target path to store the blacklisted graph</DESCRIPTION>
<PARAMETERS> <PARAMETERS>
<PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM> <PARAM managedBy="system" name="parameterName" required="true" type="string">blacklistedGraphPath</PARAM>
<PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/13_graph_blacklisted</PARAM> <PARAM managedBy="user" name="parameterValue" required="true" type="string">/tmp/beta_provision/graph/14_graph_blacklisted</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS> <ARCS>
<ARC to="waitConfig"/> <ARC to="waitConfig"/>
@ -324,6 +339,31 @@
</PARAM> </PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM> <PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS> </PARAMETERS>
<ARCS>
<ARC to="graphCleaningFirst"/>
</ARCS>
</NODE>
<NODE name="graphCleaningFirst" type="SubmitHadoopJob">
<DESCRIPTION>clean the properties in the graph typed as Qualifier according to the vocabulary indicated in schemeid</DESCRIPTION>
<PARAMETERS>
<PARAM managedBy="system" name="hadoopJob" required="true" type="string">executeOozieJob</PARAM>
<PARAM managedBy="system" name="cluster" required="true" type="string">IIS</PARAM>
<PARAM managedBy="system" name="envParams" required="true" type="string">
{
'graphInputPath' : 'rawGraphPath',
'graphOutputPath': 'firstCleanedGraphPath',
'isLookupUrl': 'isLookUpUrl'
}
</PARAM>
<PARAM managedBy="system" name="params" required="true" type="string">
{
'oozie.wf.application.path' : '/lib/dnet/oa/graph/clean/oozie_app',
'workingPath' : '/tmp/beta_provision/working_dir/first_clean'
}
</PARAM>
<PARAM managedBy="system" name="oozieReportActionsCsv" required="true" type="string">build-report</PARAM>
</PARAMETERS>
<ARCS> <ARCS>
<ARC to="duplicateScan"/> <ARC to="duplicateScan"/>
</ARCS> </ARCS>
@ -337,7 +377,7 @@
<PARAM managedBy="system" name="envParams" required="true" type="string"> <PARAM managedBy="system" name="envParams" required="true" type="string">
{ {
'actionSetId' : 'dedupConfig', 'actionSetId' : 'dedupConfig',
'graphBasePath' : 'rawGraphPath', 'graphBasePath' : 'firstCleanedGraphPath',
'dedupGraphPath': 'dedupGraphPath', 'dedupGraphPath': 'dedupGraphPath',
'isLookUpUrl' : 'isLookUpUrl' 'isLookUpUrl' : 'isLookUpUrl'
} }