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added propagation for project to organization

This commit is contained in:
Miriam Baglioni 2023-05-31 11:06:58 +02:00
parent a235d2a24a
commit 0389b57ca7
21 changed files with 153 additions and 70 deletions

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@ -57,7 +57,10 @@ public class PropagationConstant {
public static final String PROPAGATION_RELATION_RESULT_ORGANIZATION_INST_REPO_CLASS_NAME = "Propagation of affiliation to result collected from datasources of type institutional repository";
public static final String PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID = "result:organization:semrel";
public static final String PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME = "Propagation of affiliation to result through sematic relations";
public static final String PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME = "Propagation of affiliation to result through semantic relations";
public static final String PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_ID = "project:organization:semrel";
public static final String PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_NAME = "Propagation of participation to project through semantic relations";
public static final String PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_ID = "result:project:semrel";
public static final String PROPAGATION_RELATION_RESULT_PROJECT_SEM_REL_CLASS_NAME = "Propagation of result to project through semantic relation";
@ -171,6 +174,32 @@ public class PropagationConstant {
return newRelations;
}
public static Relation getParticipantRelation(
String source,
String target,
String rel_class) {
return getRelation(source, target ,
rel_class,
ModelConstants.PROJECT_ORGANIZATION,
ModelConstants.PARTICIPATION,
PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_ID,
PROPAGATION_RELATION_PROJECT_ORGANIZATION_SEM_REL_CLASS_NAME);
}
public static Relation getAffiliationRelation(
String source,
String target,
String rel_class) {
return getRelation(source, target ,
rel_class,
ModelConstants.RESULT_ORGANIZATION,
ModelConstants.AFFILIATION,
PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME);
}
public static Relation getRelation(
String source,
String target,

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import java.io.Serializable;

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
@ -7,6 +7,7 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
import java.io.Serializable;
import java.util.*;
import com.fasterxml.jackson.databind.ObjectMapper;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.*;
@ -14,8 +15,6 @@ import org.apache.spark.sql.*;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.KeyValueSet;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.resulttoorganizationfrominstrepo.SparkResultToOrganizationFromIstRepoJob;
@ -47,13 +46,20 @@ public class PrepareInfo implements Serializable {
"' and datainfo.deletedbyinference = false " +
"GROUP BY source";
// associate projects to all the participant orgs
private static final String PROJECT_ORGANIZATION_QUERY = "SELECT source key, collect_set(target) as valueSet " +
"FROM relation " +
"WHERE lower(relclass) = '" + ModelConstants.IS_PARTICIPANT.toLowerCase() +
"' and datainfo.deletedbyinference = false " +
"GROUP BY source";
public static void main(String[] args) throws Exception {
String jsonConfiguration = IOUtils
.toString(
SparkResultToOrganizationFromIstRepoJob.class
.getResourceAsStream(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/input_preparation_parameter.json"));
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/input_preparation_parameter.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
@ -74,6 +80,9 @@ public class PrepareInfo implements Serializable {
final String resultOrganizationPath = parser.get("resultOrgPath");
log.info("resultOrganizationPath: {}", resultOrganizationPath);
final String projectOrgPath = parser.get("projectOrganizationPath");
log.info("projectOrgPath: {}", projectOrgPath);
final String relationPath = parser.get("relationPath");
log.info("relationPath: {}", relationPath);
@ -89,11 +98,12 @@ public class PrepareInfo implements Serializable {
childParentPath,
leavesPath,
resultOrganizationPath,
projectOrgPath,
relationPath));
}
private static void prepareInfo(SparkSession spark, String inputPath, String childParentOrganizationPath,
String currentIterationPath, String resultOrganizationPath, String relationPath) {
String currentIterationPath, String resultOrganizationPath, String resultProjectPath, String relationPath) {
Dataset<Relation> relation = readPath(spark, inputPath + "/relation", Relation.class);
relation.createOrReplaceTempView("relation");
@ -113,14 +123,31 @@ public class PrepareInfo implements Serializable {
.option("compression", "gzip")
.json(resultOrganizationPath);
spark
.sql(PROJECT_ORGANIZATION_QUERY)
.as(Encoders.bean(KeyValueSet.class))
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(resultProjectPath);
relation
.filter(
(FilterFunction<Relation>) r -> !r.getDataInfo().getDeletedbyinference() &&
r.getRelClass().equals(ModelConstants.HAS_AUTHOR_INSTITUTION))
.write()
.filter(
(FilterFunction<Relation>) r -> !r.getDataInfo().getDeletedbyinference() &&
r.getRelClass().equals(ModelConstants.HAS_AUTHOR_INSTITUTION))
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(relationPath);
.json(relationPath + "/result");
relation
.filter(
(FilterFunction<Relation>) r -> !r.getDataInfo().getDeletedbyinference() &&
r.getRelClass().equals(ModelConstants.IS_PARTICIPANT))
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(relationPath + "/project");
Dataset<String> children = spark
.sql(

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import java.io.Serializable;

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
@ -30,7 +30,8 @@ import eu.dnetlib.dhp.schema.oaf.Relation;
public class SparkResultToOrganizationFromSemRel implements Serializable {
private static final Logger log = LoggerFactory.getLogger(SparkResultToOrganizationFromSemRel.class);
private static final int MAX_ITERATION = 5;
public static final String NEW_RELATION_PATH = "/newRelation";
public static final String NEW_RESULT_RELATION_PATH = "/newResultRelation";
public static final String NEW_PROJECT_RELATION_PATH = "/newProjectRelation";
public static void main(String[] args) throws Exception {
@ -62,6 +63,9 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
final String resultOrganizationPath = parser.get("resultOrgPath");
log.info("resultOrganizationPath: {}", resultOrganizationPath);
final String projectOrganizationPath = parser.get("projectOrganizationPath");
log.info("projectOrganizationPath: {}", projectOrganizationPath);
final String workingPath = parser.get("workingDir");
log.info("workingPath: {}", workingPath);
@ -88,6 +92,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
leavesPath,
childParentPath,
resultOrganizationPath,
projectOrganizationPath,
relationPath,
workingPath,
outputPath,
@ -98,13 +103,14 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
String leavesPath,
String childParentPath,
String resultOrganizationPath,
String projectOrganizationPath,
String graphPath,
String workingPath,
String outputPath,
int iterations) {
if (iterations == 1) {
doPropagateOnce(
spark, leavesPath, childParentPath, resultOrganizationPath, graphPath,
spark, leavesPath, childParentPath, resultOrganizationPath, projectOrganizationPath, graphPath,
workingPath, outputPath);
} else {
@ -130,15 +136,22 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
}
private static void doPropagateOnce(SparkSession spark, String leavesPath, String childParentPath,
String resultOrganizationPath, String graphPath, String workingPath,
String resultOrganizationPath, String projectOrganizationPath, String graphPath, String workingPath,
String outputPath) {
StepActions
.execStep(
spark, graphPath, workingPath + NEW_RELATION_PATH,
spark, graphPath + "/result", workingPath + NEW_RESULT_RELATION_PATH,
leavesPath, childParentPath, resultOrganizationPath);
addNewRelations(spark, workingPath + NEW_RELATION_PATH, outputPath);
addNewRelations(spark, workingPath + NEW_RESULT_RELATION_PATH, outputPath);
StepActions
.execStep(
spark, graphPath + "/project", workingPath + NEW_PROJECT_RELATION_PATH,
leavesPath, childParentPath, projectOrganizationPath);
addNewRelations(spark, workingPath + NEW_PROJECT_RELATION_PATH, outputPath);
}
private static void doPropagate(SparkSession spark, String leavesPath, String childParentPath,
@ -151,11 +164,11 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
iteration++;
StepActions
.execStep(
spark, graphPath, workingPath + NEW_RELATION_PATH,
spark, graphPath, workingPath + NEW_RESULT_RELATION_PATH,
leavesPath, childParentPath, resultOrganizationPath);
StepActions
.prepareForNextStep(
spark, workingPath + NEW_RELATION_PATH, resultOrganizationPath, leavesPath,
spark, workingPath + NEW_RESULT_RELATION_PATH, resultOrganizationPath, leavesPath,
childParentPath, workingPath + "/leaves", workingPath + "/resOrg");
moveOutput(spark, workingPath, leavesPath, resultOrganizationPath);
leavesCount = readPath(spark, leavesPath, Leaves.class).count();
@ -185,7 +198,7 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
propagationCounter.getNotReachedFirstParent().add(1);
}
addNewRelations(spark, workingPath + NEW_RELATION_PATH, outputPath);
addNewRelations(spark, workingPath + NEW_RESULT_RELATION_PATH, outputPath);
}
private static void moveOutput(SparkSession spark, String workingPath, String leavesPath,
@ -212,16 +225,24 @@ public class SparkResultToOrganizationFromSemRel implements Serializable {
.mapGroups(
(MapGroupsFunction<String, Relation, Relation>) (k, it) -> it.next(), Encoders.bean(Relation.class))
.flatMap(
(FlatMapFunction<Relation, Relation>) r -> Arrays
.asList(
r, getRelation(
r.getTarget(), r.getSource(), ModelConstants.IS_AUTHOR_INSTITUTION_OF,
ModelConstants.RESULT_ORGANIZATION,
ModelConstants.AFFILIATION,
PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME))
.iterator()
(FlatMapFunction<Relation, Relation>) r ->
{
if(r.getSource().startsWith("50|")){
return Arrays
.asList(
r, getAffiliationRelation(
r.getTarget(), r.getSource(), ModelConstants.IS_AUTHOR_INSTITUTION_OF))
.iterator();
}else{
return Arrays
.asList(
r, getParticipantRelation(
r.getTarget(), r.getSource(), ModelConstants.HAS_PARTICIPANT))
.iterator();
}
}
, Encoders.bean(Relation.class))
.write()

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.*;
import static eu.dnetlib.dhp.PropagationConstant.readPath;
@ -14,8 +14,6 @@ import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.jetbrains.annotations.NotNull;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
@ -28,13 +26,13 @@ public class StepActions implements Serializable {
public static void execStep(SparkSession spark,
String graphPath, String newRelationPath,
String leavesPath, String chldParentOrgPath, String resultOrgPath) {
String leavesPath, String chldParentOrgPath, String entityOrgPath) {
Dataset<Relation> relationGraph = readPath(spark, graphPath, Relation.class);
// select only the relation source target among those proposed by propagation that are not already existent
getNewRels(
newRelationPath, relationGraph,
getPropagationRelation(spark, leavesPath, chldParentOrgPath, resultOrgPath));
getPropagationRelation(spark, leavesPath, chldParentOrgPath, entityOrgPath, ModelConstants.HAS_AUTHOR_INSTITUTION));
}
@ -152,19 +150,20 @@ public class StepActions implements Serializable {
private static Dataset<Relation> getPropagationRelation(SparkSession spark,
String leavesPath,
String chldParentOrgPath,
String resultOrgPath) {
String entityOrgPath,
String semantics) {
Dataset<KeyValueSet> childParent = readPath(spark, chldParentOrgPath, KeyValueSet.class);
Dataset<KeyValueSet> resultOrg = readPath(spark, resultOrgPath, KeyValueSet.class);
Dataset<KeyValueSet> entityOrg = readPath(spark, entityOrgPath, KeyValueSet.class);
Dataset<Leaves> leaves = readPath(spark, leavesPath, Leaves.class);
childParent.createOrReplaceTempView("childParent");
resultOrg.createOrReplaceTempView("resultOrg");
entityOrg.createOrReplaceTempView("entityOrg");
leaves.createOrReplaceTempView("leaves");
Dataset<KeyValueSet> resultParent = spark
.sql(
"SELECT resId as key, " +
"SELECT entityId as key, " +
"collect_set(parent) valueSet " +
"FROM (SELECT key as child, parent " +
" FROM childParent " +
@ -172,7 +171,7 @@ public class StepActions implements Serializable {
"JOIN leaves " +
"ON leaves.value = cp.child " +
"JOIN (" +
"SELECT key as resId, org " +
"SELECT key as entityId, org " +
"FROM resultOrg " +
"LATERAL VIEW explode (valueSet) ks as org ) as ro " +
"ON leaves.value = ro.org " +
@ -186,19 +185,16 @@ public class StepActions implements Serializable {
.getValueSet()
.stream()
.map(
orgId -> getRelation(
orgId -> getAffiliationRelation(
v.getKey(),
orgId,
ModelConstants.HAS_AUTHOR_INSTITUTION,
ModelConstants.RESULT_ORGANIZATION,
ModelConstants.AFFILIATION,
PROPAGATION_DATA_INFO_TYPE,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_ID,
PROPAGATION_RELATION_RESULT_ORGANIZATION_SEM_REL_CLASS_NAME))
semantics))
.collect(Collectors.toList())
.iterator(),
Encoders.bean(Relation.class));
}
}

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@ -40,5 +40,11 @@
"paramLongName": "relationPath",
"paramDescription": "the path where to store the selected subset of relations",
"paramRequired": false
},
{
"paramName": "pop",
"paramLongName": "projectOrganizationPath",
"paramDescription": "the number of iterations to be computed",
"paramRequired": true
}
]

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@ -52,5 +52,10 @@
"paramLongName": "iterations",
"paramDescription": "the number of iterations to be computed",
"paramRequired": false
}
},{
"paramName": "pop",
"paramLongName": "projectOrganizationPath",
"paramDescription": "the number of iterations to be computed",
"paramRequired": true
}
]

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@ -134,7 +134,7 @@
<master>yarn</master>
<mode>cluster</mode>
<name>PrepareResultOrganizationAssociation</name>
<class>eu.dnetlib.dhp.resulttoorganizationfromsemrel.PrepareInfo</class>
<class>eu.dnetlib.dhp.entitytoorganizationfromsemrel.PrepareInfo</class>
<jar>dhp-enrichment-${projectVersion}.jar</jar>
<spark-opts>
--executor-cores=${sparkExecutorCores}
@ -150,6 +150,7 @@
<arg>--leavesPath</arg><arg>${workingDir}/preparedInfo/leavesPath</arg>
<arg>--childParentPath</arg><arg>${workingDir}/preparedInfo/childParentPath</arg>
<arg>--resultOrgPath</arg><arg>${workingDir}/preparedInfo/resultOrgPath</arg>
<arg>--projectOrganizationPath</arg><arg>${workingDir}/preparedInfo/projectOrganizationPath</arg>
<arg>--relationPath</arg><arg>${workingDir}/preparedInfo/relation</arg>
</spark>
<ok to="apply_resulttoorganization_propagation"/>
@ -161,7 +162,7 @@
<master>yarn</master>
<mode>cluster</mode>
<name>resultToOrganizationFromSemRel</name>
<class>eu.dnetlib.dhp.resulttoorganizationfromsemrel.SparkResultToOrganizationFromSemRel</class>
<class>eu.dnetlib.dhp.entitytoorganizationfromsemrel.SparkResultToOrganizationFromSemRel</class>
<jar>dhp-enrichment-${projectVersion}.jar</jar>
<spark-opts>
--executor-cores=${sparkExecutorCores}

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@ -1,22 +1,17 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.readPath;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.List;
import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.FilterFunction;
import org.apache.spark.api.java.function.ForeachFunction;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.Row;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
@ -28,7 +23,6 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.KeyValueSet;
import eu.dnetlib.dhp.projecttoresult.SparkResultToProjectThroughSemRelJob;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class PrepareInfoJobTest {
@ -78,11 +72,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/childparenttest1")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/childparenttest1")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
@ -223,11 +218,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/childparenttest2")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/childparenttest2")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
@ -343,11 +339,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/resultorganizationtest")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/resultorganizationtest")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
@ -355,7 +352,7 @@ public class PrepareInfoJobTest {
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
JavaRDD<Relation> tmp = sc
.textFile(workingDir.toString() + "/relation")
.textFile(workingDir.toString() + "/relation/result")
.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
Dataset<Relation> verificationDs = spark.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
@ -373,11 +370,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/resultorganizationtest")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/resultorganizationtest")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
@ -507,11 +505,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/resultorganizationtest")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/resultorganizationtest")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"
@ -534,11 +533,12 @@ public class PrepareInfoJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-graphPath", getClass()
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfromsemrel/childparenttest1")
"/eu/dnetlib/dhp/entitytoorganizationfromsemrel/childparenttest1")
.getPath(),
"-hive_metastore_uris", "",
"-leavesPath", workingDir.toString() + "/currentIteration/",
"-resultOrgPath", workingDir.toString() + "/resultOrganization/",
"-projectOrganizationPath", workingDir.toString() + "/projectOrganization/",
"-childParentPath", workingDir.toString() + "/childParentOrg/",
"-relationPath", workingDir.toString() + "/relation"

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@ -1,7 +1,6 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import static eu.dnetlib.dhp.PropagationConstant.isSparkSessionManaged;
import static eu.dnetlib.dhp.PropagationConstant.readPath;
import java.io.IOException;
@ -12,7 +11,6 @@ import org.apache.commons.io.FileUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.api.java.function.ForeachFunction;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.resulttoorganizationfromsemrel;
package eu.dnetlib.dhp.entitytoorganizationfromsemrel;
import java.io.IOException;
import java.nio.file.Files;