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Added unit test to verify the generation in the OriginalID the old openaire Identifier generated by OAI

This commit is contained in:
Sandro La Bruzzo 2022-07-14 10:19:59 +02:00
parent 0a4f4d98fa
commit 00168303db
1 changed files with 35 additions and 6 deletions
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41
dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/sx/bio/BioScholixTest.scala
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@ -5,7 +5,7 @@ import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
import eu.dnetlib.dhp.schema.oaf.utils.PidType import eu.dnetlib.dhp.schema.oaf.utils.PidType
import eu.dnetlib.dhp.schema.oaf.{Oaf, Publication, Relation, Result} import eu.dnetlib.dhp.schema.oaf.{Oaf, Publication, Relation, Result}
import eu.dnetlib.dhp.sx.bio.BioDBToOAF.ScholixResolved import eu.dnetlib.dhp.sx.bio.BioDBToOAF.ScholixResolved
import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PubMedToOaf} import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PMSubject, PubMedToOaf}
import org.json4s.DefaultFormats import org.json4s.DefaultFormats
import org.json4s.JsonAST.{JField, JObject, JString} import org.json4s.JsonAST.{JField, JObject, JString}
import org.json4s.jackson.JsonMethods.parse import org.json4s.jackson.JsonMethods.parse
@ -119,13 +119,42 @@ class BioScholixTest extends AbstractVocabularyTest {
if (hasPMC) { if (hasPMC) {
assertTrue(p.getOriginalId.asScala.exists(oId => oId.startsWith("od_______267::"))) assertTrue(p.getOriginalId.asScala.exists(oId => oId.startsWith("od_______267::")))
} }
} }
@Test
def testPubmedOriginalID():Unit = {
val article:PMArticle = new PMArticle
article.setPmid("1234")
article.setTitle("a Title")
// VERIFY PUBLICATION IS NOT NULL
article.getPublicationTypes.add( new PMSubject("article",null, null))
var publication = PubMedToOaf.convert(article, vocabularies).asInstanceOf[Publication]
assertNotNull(publication)
assertEquals("50|pmid________::81dc9bdb52d04dc20036dbd8313ed055", publication.getId)
// VERIFY PUBLICATION ID DOES NOT CHANGE ALSO IF SETTING PMC IDENTIFIER
article.setPmcId("PMC1517292")
publication = PubMedToOaf.convert(article, vocabularies).asInstanceOf[Publication]
assertNotNull(publication)
assertEquals("50|pmid________::81dc9bdb52d04dc20036dbd8313ed055", publication.getId)
// VERIFY ORIGINAL ID GENERATE IN OLD WAY USING PMC IDENTIFIER EXISTS
val oldOpenaireID ="od_______267::0000072375bc0e68fa09d4e6b7658248"
val hasOldOpenAIREID = publication.getOriginalId.asScala.exists(o => o.equalsIgnoreCase(oldOpenaireID))
assertTrue(hasOldOpenAIREID)
}
@Test @Test
def testPubmedMapping() :Unit = { def testPubmedMapping() :Unit = {