package eu.dnetlib.dhp.broker.oa; import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession; import java.util.Optional; import org.apache.commons.io.IOUtils; import org.apache.spark.SparkConf; import org.apache.spark.sql.Dataset; import org.apache.spark.sql.Encoders; import org.apache.spark.sql.SaveMode; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import com.fasterxml.jackson.databind.ObjectMapper; import eu.dnetlib.dhp.application.ArgumentApplicationParser; import eu.dnetlib.dhp.broker.oa.util.ClusterUtils; import eu.dnetlib.dhp.broker.oa.util.ConversionUtils; import eu.dnetlib.dhp.broker.oa.util.aggregators.withRels.RelatedSoftware; import eu.dnetlib.dhp.schema.oaf.Relation; import eu.dnetlib.dhp.schema.oaf.Software; public class PrepareRelatedSoftwaresJob { private static final Logger log = LoggerFactory.getLogger(PrepareRelatedSoftwaresJob.class); private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper(); public static void main(final String[] args) throws Exception { final ArgumentApplicationParser parser = new ArgumentApplicationParser( IOUtils .toString( PrepareRelatedSoftwaresJob.class .getResourceAsStream("/eu/dnetlib/dhp/broker/oa/common_params.json"))); parser.parseArgument(args); final Boolean isSparkSessionManaged = Optional .ofNullable(parser.get("isSparkSessionManaged")) .map(Boolean::valueOf) .orElse(Boolean.TRUE); log.info("isSparkSessionManaged: {}", isSparkSessionManaged); final String graphPath = parser.get("graphPath"); log.info("graphPath: {}", graphPath); final String workingPath = parser.get("workingPath"); log.info("workingPath: {}", workingPath); final String relsPath = workingPath + "/relatedSoftwares"; log.info("relsPath: {}", relsPath); final SparkConf conf = new SparkConf(); runWithSparkSession(conf, isSparkSessionManaged, spark -> { ClusterUtils.removeDir(spark, relsPath); final Dataset softwares = ClusterUtils.readPath(spark, graphPath + "/software", Software.class); final Dataset rels = ClusterUtils.readPath(spark, graphPath + "/relation", Relation.class); rels .joinWith(softwares, softwares.col("id").equalTo(rels.col("target")), "inner") .map( t -> new RelatedSoftware( t._1.getSource(), t._1.getRelType(), ConversionUtils.oafSoftwareToBrokerSoftware(t._2)), Encoders.bean(RelatedSoftware.class)) .write() .mode(SaveMode.Overwrite) .json(relsPath); }); } }