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882 Commits

Author SHA1 Message Date
Enrico Ottonello 0b29bb7e3b spark job to download orcid record modified after a fixed date 2020-05-15 19:49:26 +02:00
Claudio Atzori 7838f2c63f init the empty list for author pids mapped from OAF 2020-05-15 17:06:01 +02:00
Claudio Atzori 82b615ab33 NPE check 2020-05-15 16:04:46 +02:00
Miriam Baglioni e26a67c3eb merge with upstream 2020-05-15 15:53:05 +02:00
Claudio Atzori 7a89507ab1 code formatting 2020-05-15 15:16:54 +02:00
Miriam Baglioni 5ec8c49ad5 removed serialization points 2020-05-15 12:49:58 +02:00
Claudio Atzori 1d35836a58 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-15 12:26:31 +02:00
Claudio Atzori cfc8948717 fixed mapping OdfToGraph: pick the correct element to map author pids and author affiliations; extended mapping Oaf2Graph: added support for author pids 2020-05-15 12:26:16 +02:00
Michele Artini 2a4e68a292 events recognition 2020-05-15 12:25:37 +02:00
Claudio Atzori a832658296 code formatting 2020-05-15 10:21:09 +02:00
Claudio Atzori 50d6a2ad3c added output directory removal in the blacklist spark actions; included common global properties in blacklist's workflow.xml 2020-05-15 09:53:37 +02:00
Claudio Atzori 18f46e47b9 added relations to the graph2hive import workflow 2020-05-15 09:34:48 +02:00
Claudio Atzori 9d028ffe1c cleanup 2020-05-15 09:28:55 +02:00
Claudio Atzori fd62359538 cleanup 2020-05-15 09:28:15 +02:00
Claudio Atzori eb64335a54 parallel implementation for graph Hive importer 2020-05-15 09:05:26 +02:00
Miriam Baglioni 94571c9a51 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-14 18:29:55 +02:00
Miriam Baglioni f25db01664 changed in the constant from propagationconstants to modelconstants 2020-05-14 18:29:24 +02:00
Miriam Baglioni d05630d979 removed the constants added in ModelConstants 2020-05-14 18:22:50 +02:00
Claudio Atzori f044d09315 revised mapping: more accurate mapping for name/surname from datacite format; improved mapping of null values 2020-05-14 15:07:24 +02:00
Miriam Baglioni e7eb4f377e Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-14 10:34:17 +02:00
Miriam Baglioni 8828458acf minor changes 2020-05-14 10:34:12 +02:00
Claudio Atzori ab37953332 added global properties in wf definitions to avoid repeating name-node and job-tracker in the (many) distcp actions; reintroduced output directory removal at the beginning of each spark action 2020-05-14 10:25:41 +02:00
Claudio Atzori 12bfa6702e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-13 17:01:17 +02:00
Claudio Atzori 5ecacad70a fixed default resource typing in Oaf/Odf mapping 2020-05-13 17:01:11 +02:00
Enrico Ottonello 12756f9d41 multithread (4 threads) test to feed elastic search 2020-05-13 16:11:40 +02:00
Michele Artini c0265213a0 partial implementation 2020-05-13 12:00:27 +02:00
Sandro La Bruzzo a92ee0f41e Merge remote-tracking branch 'origin/master' into doiboost 2020-05-13 10:38:13 +02:00
Sandro La Bruzzo d876f47d06 next step of MAG conversion implemented 2020-05-13 10:38:04 +02:00
Claudio Atzori 1ddd33de41 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-13 09:04:41 +02:00
Claudio Atzori 85f3c55992 fixed node names in blacklist workflow 2020-05-13 09:04:33 +02:00
Miriam Baglioni 43f127448d changed the package name from dhp-propagation to dhp-enrichment for the preparation phase of funding propagation 2020-05-12 18:24:26 +02:00
Enrico Ottonello 08040cef80 spark action to analyze orcid lambda file 2020-05-12 16:57:43 +02:00
Claudio Atzori ec0782e582 renamed jar containing the bulktagging and propagation workflows from dhp-[bulktagging|propagation] to dhp-enrichment; adjusted xml formatting 2020-05-12 15:49:28 +02:00
Miriam Baglioni 1547ca7e15 added blacklist step to the end of the provision wf 2020-05-12 12:17:27 +02:00
Miriam Baglioni 14979f299e changed the configuration factory 2020-05-12 11:28:38 +02:00
Miriam Baglioni f8aef6161a minor modification 2020-05-12 11:28:07 +02:00
Miriam Baglioni 7387f3449a changed the route to find the verb resolver classes 2020-05-12 11:27:38 +02:00
Miriam Baglioni 7687519f00 merged conflicts with upstream branch 2020-05-12 10:03:44 +02:00
Miriam Baglioni 8ffc050b8a fixed problem in communityconfigurationfactory test 2020-05-12 10:01:09 +02:00
Claudio Atzori 527e8169a8 adjusted paths pointing to test configurations, cleanup 2020-05-11 18:17:05 +02:00
Claudio Atzori f9a62ba63b added wf nodes to copy entities to the output path 2020-05-11 18:16:39 +02:00
Miriam Baglioni ad63effb4e removed deletion of working dir 2020-05-11 17:48:22 +02:00
Claudio Atzori c6b028f2af code formatting 2020-05-11 17:38:08 +02:00
Claudio Atzori 6d0b11252e bulktagging wfs moved into common dhp-enrichment module 2020-05-11 17:32:06 +02:00
Miriam Baglioni 50659011eb refactoring 2020-05-11 16:14:26 +02:00
Miriam Baglioni e883daf87e added the outputPath parameter and the reset path to remove the outputath directory 2020-05-11 16:10:24 +02:00
Miriam Baglioni 5ab3424c77 removed unused dependencies 2020-05-11 16:09:37 +02:00
Miriam Baglioni 6a3b081263 added the last step of blacklisteing 2020-05-11 16:09:20 +02:00
Enrico Ottonello 3b1a68cbf5 elastic search feed test 2020-05-11 14:53:52 +02:00
Enrico Ottonello f53e42bda7 merged 2020-05-11 14:49:28 +02:00
Enrico Ottonello 7990894454 different date format in lambda file parsing 2020-05-11 14:41:11 +02:00
Sandro La Bruzzo 0c6774e4da updated pom version 2020-05-11 14:35:14 +02:00
Miriam Baglioni bbc9b4f329 removed unused imports 2020-05-11 14:28:55 +02:00
Miriam Baglioni 757bae53ea removed unusefule serialization points 2020-05-11 14:28:37 +02:00
Miriam Baglioni b35d57a1ac added resources for test 2020-05-11 14:15:30 +02:00
Miriam Baglioni e563e65335 moved check from join to method 2020-05-11 14:11:44 +02:00
Sandro La Bruzzo b90609848b Merge remote-tracking branch 'origin/master' into doiboost 2020-05-11 14:08:31 +02:00
Sandro La Bruzzo 4062eafbdb merged from branch 2020-05-11 14:08:16 +02:00
Miriam Baglioni f5d785e096 used the DbClient moved in dhp-common 2020-05-11 13:59:42 +02:00
Miriam Baglioni 112b2cb3c3 added the test class 2020-05-11 13:58:58 +02:00
Miriam Baglioni 9a7ae523c9 update to version 1.2.1-SNAPSHOT 2020-05-11 13:57:47 +02:00
Miriam Baglioni 2abb84877d Merge branch 'master' into blacklist 2020-05-11 10:37:49 +02:00
Miriam Baglioni b0f0b24263 update to version 1.2.1-SNAPSHOT 2020-05-11 10:37:31 +02:00
Miriam Baglioni a7e91e23ba update to versione 1.2.1-SNAPSHOT 2020-05-11 10:34:30 +02:00
Miriam Baglioni bb59bdd60f merge upstream 2020-05-11 10:33:17 +02:00
Miriam Baglioni 5e3548add6 - 2020-05-11 10:33:08 +02:00
Miriam Baglioni dc8c8fa480 changed the version 2020-05-11 10:20:48 +02:00
Miriam Baglioni 871e079b45 merged with master 2020-05-11 10:20:00 +02:00
Claudio Atzori 60c40618d3 [maven-release-plugin] prepare for next development iteration 2020-05-11 10:17:14 +02:00
Claudio Atzori c267d958d5 [maven-release-plugin] prepare release dhp-1.2.0 2020-05-11 10:17:10 +02:00
Miriam Baglioni 622ba87ec2 changed the version 2020-05-11 10:10:36 +02:00
Miriam Baglioni 391b2399cc merge upstream 2020-05-11 10:08:51 +02:00
Claudio Atzori 42f1a2bf94 bumped project version to 1.2.0-SNAPSHOT 2020-05-11 10:05:57 +02:00
Sandro La Bruzzo 1412158a6f merged from branch 2020-05-11 09:45:50 +02:00
Miriam Baglioni 32301451ec merge upstream 2020-05-11 09:42:23 +02:00
Miriam Baglioni 7e66bc2527 fix a typo in the compression keyword and added some logging info in the spark job 2020-05-11 09:40:58 +02:00
Sandro La Bruzzo 1662f221f5 added test class 2020-05-11 09:39:11 +02:00
Sandro La Bruzzo 2b48a2c32c Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost 2020-05-11 09:38:36 +02:00
Sandro La Bruzzo 4cebca09d2 start implementing MAG mapping 2020-05-11 09:38:27 +02:00
Spyros Zoupanos ae0f535c73 Fixing hardcoded reference to main openAIRE graph db 2020-05-09 22:34:48 +03:00
Claudio Atzori fd519df616 new rels produced by dedup workflow must be unique 2020-05-08 19:00:38 +02:00
Claudio Atzori 0ccc864ad9 [maven-release-plugin] prepare for next development iteration 2020-05-08 17:01:31 +02:00
Claudio Atzori 6e47c724c6 [maven-release-plugin] prepare release dhp-1.1.7 2020-05-08 17:01:27 +02:00
Claudio Atzori 5b28bb4131 code formatting 2020-05-08 16:49:47 +02:00
Claudio Atzori 8fd1952f16 code formatting 2020-05-08 16:01:09 +02:00
miconis 3420998bb4 reltype set in mergerels 2020-05-08 15:43:30 +02:00
Enrico Ottonello b9d126dd1f formatting modified after commit 2020-05-08 14:54:37 +02:00
Enrico Ottonello 7e1c987370 Merge branch 'doiboost' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doiboost 2020-05-08 14:49:50 +02:00
Enrico Ottonello 9d812788e4 added job to download from orcid the records modified after a fixed date, the info are taken from last_modified.csv on hdfs 2020-05-08 14:49:39 +02:00
Miriam Baglioni 9a29ab7508 got back to the readPath we have before 2020-05-08 13:08:56 +02:00
Miriam Baglioni 28556507e7 - 2020-05-08 12:54:52 +02:00
Claudio Atzori b2192fdcdc simplified reset_outputpath nodes across the workflows, applied common xml formatting 2020-05-08 12:33:31 +02:00
Miriam Baglioni 4c94231cad merge with master fork 2020-05-08 12:25:57 +02:00
Miriam Baglioni 9b4c0d4b3a - 2020-05-08 11:51:45 +02:00
Miriam Baglioni 53952707b6 modified test because of new step of data preparation. It now expects to find ResultCountrySet serialization nstead of DatasourceCountry 2020-05-08 11:49:19 +02:00
Claudio Atzori 62ea19f1d3 introduced mapping for ExternalReferences, made urls defined within an instance unique 2020-05-08 09:43:26 +02:00
Claudio Atzori 8c67073a07 force speculative execution to false 2020-05-08 09:42:21 +02:00
Miriam Baglioni d6b9de9f46 Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop 2020-05-07 18:22:59 +02:00
Miriam Baglioni f95d288681 fixed swithch of parameters 2020-05-07 18:22:32 +02:00
Claudio Atzori 166aafd936 heavy cleanup 2020-05-07 18:22:26 +02:00
Michele Artini ac0da5a7ee Partial implementation of broker events 2020-05-07 12:31:26 +02:00
Miriam Baglioni fb405275f7 merged with master 2020-05-07 11:48:21 +02:00
Miriam Baglioni e124278934 - 2020-05-07 11:47:11 +02:00
Claudio Atzori 5111671e62 celanup 2020-05-07 11:47:00 +02:00
Miriam Baglioni 9f8855991c changed Encorders.bean to Encoders.kryo 2020-05-07 11:44:35 +02:00
Miriam Baglioni 207b899d6d merged with upstream 2020-05-07 11:43:53 +02:00
Claudio Atzori 5b3f8a0e90 using Encoders.bean instead of kryo 2020-05-07 11:41:41 +02:00
Miriam Baglioni 182225becb Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop 2020-05-07 11:38:17 +02:00
Miriam Baglioni 5efae3acb9 new workflow for job3 2020-05-07 11:38:10 +02:00
Claudio Atzori 73243793b2 Dataset based implementation for SparkCountryPropagationJob3 2020-05-07 11:15:24 +02:00
Claudio Atzori 128c3bf1c8 restored Author bean with simple getter/setter, author pid addition moved into dedicated implementation SparkOrcidToResultFromSemRelJob3 2020-05-07 11:14:56 +02:00
Miriam Baglioni b2fec32c87 new workflow for job3 2020-05-07 10:01:57 +02:00
Miriam Baglioni 29bc8c44b1 changes in the construction of new country set 2020-05-07 10:01:34 +02:00
Miriam Baglioni 55e825acd4 chenged the test according to changes in SparkCOuntryPropagationJob2 2020-05-07 10:01:00 +02:00
Miriam Baglioni 16193cf0ba new workflow and parameter for country propagation 2020-05-07 09:59:58 +02:00
Miriam Baglioni 5a476c7a13 chenged the xquery for the cfhb table 2020-05-07 09:58:17 +02:00
Miriam Baglioni 42ad51577a new implementation with one more serialization step 2020-05-07 09:57:49 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Claudio Atzori fdfecc9578 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-06 11:28:01 +02:00
Claudio Atzori c79e2f5977 drop workingPath before starting the dedup workflow 2020-05-06 11:27:44 +02:00
Michele Artini 8f30a09d84 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-05 17:12:22 +02:00
Michele Artini ccc609f909 new module for the production of broker events 2020-05-05 17:09:00 +02:00
Miriam Baglioni dd2e698a72 added a sequentialization step on the spark job. Addedd new parameter 2020-05-05 17:03:43 +02:00
Claudio Atzori 0825321d0b improved unit tests in dhp-aggregation 2020-05-05 12:39:04 +02:00
Miriam Baglioni 252b219dd5 chanced the name of some properties 2020-05-05 10:03:32 +02:00
Claudio Atzori 4a8487165c using long param names in wf definition 2020-05-04 19:19:29 +02:00
Claudio Atzori a2fc37df5f adjusted parameters 2020-05-04 19:18:59 +02:00
Claudio Atzori f1b7e14036 code formatting 2020-05-04 19:18:34 +02:00
Miriam Baglioni 78578c3ccf fixed wrong trnasition name in workflow 2020-05-04 15:46:24 +02:00
Miriam Baglioni cc7d9b6b19 merge upstream 2020-05-04 13:59:09 +02:00
Miriam Baglioni 3957c815b9 changed the name of some parameters 2020-05-04 13:58:52 +02:00
Miriam Baglioni e218360f8a changed code for the mode of DbClient and also removed the dependency to graph-mapper 2020-05-04 12:26:17 +02:00
Miriam Baglioni 31ea05297d moved the DbClient to common and added needed dependency to pom 2020-05-04 12:22:28 +02:00
miconis 085cf173d7 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-04 12:08:20 +02:00
miconis 3df703f67d mergerels added to propagate relations 2020-05-04 12:08:12 +02:00
Claudio Atzori bac37b3973 fixed children expansion in XML records 2020-05-04 11:51:17 +02:00
Claudio Atzori 077ccd8743 stats wf properties cleanup 2020-05-04 11:41:46 +02:00
Miriam Baglioni b7dd400e51 added check if author.pid exists or is null 2020-05-01 15:09:02 +02:00
Miriam Baglioni dbf3ba051a minor 2020-04-30 20:22:07 +02:00
Miriam Baglioni 43053a286d workflow pom with added blacklist module 2020-04-30 18:30:21 +02:00
Miriam Baglioni 0631fe548a pom.xml 2020-04-30 18:29:46 +02:00
Miriam Baglioni 38ecfd5785 the wf with all the three steps for blacklisting relations 2020-04-30 18:28:46 +02:00
Miriam Baglioni 95433e1087 parameters for the preparation phase and blacklist phase 2020-04-30 18:28:13 +02:00
Miriam Baglioni 1070790c19 minor 2020-04-30 18:26:58 +02:00
Miriam Baglioni b9d56b3ced applies the actual removal of the relations 2020-04-30 18:26:25 +02:00
Miriam Baglioni d6d6ebeae5 preparation step: creates the subset of the merges relations 2020-04-30 18:25:33 +02:00
Miriam Baglioni 13f30664ea minor 2020-04-30 15:23:49 +02:00
Miriam Baglioni 276b95b7b3 add create file instruction 2020-04-30 15:05:17 +02:00
Miriam Baglioni 65a5d67b8b minor modifications 2020-04-30 14:45:27 +02:00
Miriam Baglioni 418595fec2 removed the saveGraph parameter 2020-04-30 14:45:00 +02:00