Changes to execute the stats wf only in hive

This commit is contained in:
dimitrispie 2023-01-04 11:39:01 +02:00
parent 2a4bf32d4c
commit dcb958e146
11 changed files with 472 additions and 554 deletions

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@ -31,8 +31,8 @@ hdfs dfs -copyFromLocal categories.csv ${TMP}
hdfs dfs -copyFromLocal concepts.csv ${TMP} hdfs dfs -copyFromLocal concepts.csv ${TMP}
hdfs dfs -chmod -R 777 ${TMP} hdfs dfs -chmod -R 777 ${TMP}
export HADOOP_USER="antonis.lempesis" export HADOOP_USER="dimitris.pierrakos"
export HADOOP_USER_NAME="antonis.lempesis" export HADOOP_USER_NAME="dimitris.pierrakos"
echo "Creating and populating impala tables" echo "Creating and populating impala tables"
hive $HIVE_OPTS -e "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','" hive $HIVE_OPTS -e "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"

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@ -8,7 +8,9 @@ fi
export SOURCE=$1 export SOURCE=$1
export SHADOW=$2 export SHADOW=$2
export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
export HADOOP_USER_NAME="oozie"
echo "Updating shadow database" echo "Updating shadow database"
hive --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/^\(.*\)/analyze table ${SOURCE}.\1 compute statistics;/" > foo hive $HIVE_OPTS --database ${SOURCE} -e "show tables" | grep -v WARN | sed "s/^\(.*\)/analyze table ${SOURCE}.\1 compute statistics;/" > foo
hive -f foo hive $HIVE_OPTS -f foo

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@ -8,8 +8,8 @@ fi
export TARGET=$1 export TARGET=$1
export SCRIPT_PATH=$2 export SCRIPT_PATH=$2
export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=4831838208 -hiveconf spark.yarn.executor.memoryOverhead=450" export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
export HADOOP_USER="antonis.lempesis" export HADOOP_USER_NAME="oozie"
echo "Getting file from " $SCRIPT_PATH echo "Getting file from " $SCRIPT_PATH
hdfs dfs -copyToLocal $SCRIPT_PATH hdfs dfs -copyToLocal $SCRIPT_PATH

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@ -11,10 +11,15 @@ export TARGET=$2
export SHADOW=$3 export SHADOW=$3
export SCRIPT_PATH=$4 export SCRIPT_PATH=$4
echo "Getting file from " $4 export HIVE_OPTS="-hiveconf mapred.job.queue.name=analytics -hiveconf hive.spark.client.connect.timeout=120000ms -hiveconf hive.spark.client.server.connect.timeout=300000ms -hiveconf spark.executor.memory=19166291558 -hiveconf spark.yarn.executor.memoryOverhead=3225 -hiveconf spark.driver.memory=11596411699 -hiveconf spark.yarn.driver.memoryOverhead=1228"
hdfs dfs -copyToLocal $4 export HADOOP_USER_NAME="oozie"
echo "Getting file from " $SCRIPT_PATH
hdfs dfs -copyToLocal $SCRIPT_PATH
echo "Creating monitor database" echo "Creating monitor database"
cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 > foo #cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 > foo
hive -f foo cat step20-createMonitorDB.sql | sed "s/TARGET/${TARGET}/g" | sed "s/SOURCE/${SOURCE}/g" > foo
echo "Impala shell finished" hive $HIVE_OPTS -f foo
echo "Hive shell finished"

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@ -12,4 +12,4 @@ export SHADOW=$3
hive --database ${TARGET} -e "show tables" | grep -v WARN | sed "s/\(.*\)/analyze table ${TARGET}.\1 compute statistics;/" > foo hive --database ${TARGET} -e "show tables" | grep -v WARN | sed "s/\(.*\)/analyze table ${TARGET}.\1 compute statistics;/" > foo
hive -f foo hive -f foo
echo "Impala shell finished" echo "Hive shell finished"

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@ -29,6 +29,13 @@ select rcount.pid, sum(case when rcount.type='publication' then rcount.count els
from rcount from rcount
group by rcount.pid; group by rcount.pid;
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
create view ${stats_db_name}.rndgdpexpenditure as select * from stats_ext.rndgdpexpenditure;
create view ${stats_db_name}.doctoratestudents as select * from stats_ext.doctoratestudents;
create view ${stats_db_name}.totalresearchers as select * from stats_ext.totalresearchers;
create view ${stats_db_name}.totalresearchersft as select * from stats_ext.totalresearchersft;
create view ${stats_db_name}.hrrst as select * from stats_ext.hrrst;
create table ${stats_db_name}.result_instance stored as parquet as create table ${stats_db_name}.result_instance stored as parquet as
select distinct r.* select distinct r.*
from ( from (
@ -43,4 +50,6 @@ from (
select substr(r.id, 4) as id, cast(inst.processingchargeamount.value as float) as amount, inst.processingchargecurrency.value as currency select substr(r.id, 4) as id, cast(inst.processingchargeamount.value as float) as amount, inst.processingchargecurrency.value as currency
from ${openaire_db_name}.result r lateral view explode(r.instance) instances as inst) r from ${openaire_db_name}.result r lateral view explode(r.instance) instances as inst) r
join ${stats_db_name}.result res on res.id=r.id join ${stats_db_name}.result res on res.id=r.id
where r.amount is not null; where r.amount is not null;
create view ${stats_db_name}.issn_gold_oa_dataset as select * from stats_ext.issn_gold_oa_dataset;

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@ -10,6 +10,11 @@ create view if not exists TARGET.creation_date as select * from SOURCE.creation_
create view if not exists TARGET.funder as select * from SOURCE.funder; create view if not exists TARGET.funder as select * from SOURCE.funder;
create view if not exists TARGET.fundref as select * from SOURCE.fundref; create view if not exists TARGET.fundref as select * from SOURCE.fundref;
create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture; create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
create view if not exists TARGET.rndgdpexpenditure as select * from SOURCE.rndgdpexpenditure;
create view if not exists TARGET.doctoratestudents as select * from SOURCE.doctoratestudents;
create view if not exists TARGET.totalresearchers as select * from SOURCE.totalresearchers;
create view if not exists TARGET.totalresearchersft as select * from SOURCE.totalresearchersft;
create view if not exists TARGET.hrrst as select * from SOURCE.hrrst;
create table TARGET.result stored as parquet as create table TARGET.result stored as parquet as
select distinct * from ( select distinct * from (
@ -54,84 +59,87 @@ create table TARGET.result stored as parquet as
'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia 'openorgs____::51c7fc556e46381734a25a6fbc3fd398', -- University of Modena and Reggio Emilia
'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University 'openorgs____::235d7f9ad18ecd7e6dc62ea4990cb9db', -- Bilkent University
'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje 'openorgs____::31f2fa9e05b49d4cf40a19c3fed8eb06', -- Saints Cyril and Methodius University of Skopje
'openorgs____::db7686f30f22cbe73a4fde872ce812a6' -- University of Milan 'openorgs____::db7686f30f22cbe73a4fde872ce812a6', -- University of Milan
'openorgs____::b8b8ca674452579f3f593d9f5e557483' -- University College Cork
) )) foo; ) )) foo;
compute stats TARGET.result;
ANALYZE TABLE TARGET.result COMPUTE STATISTICS;
create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_citations stored as parquet as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_citations; ANALYZE TABLE TARGET.result_citations COMPUTE STATISTICS;
create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_references_oc stored as parquet as select * from SOURCE.result_references_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_references_oc; ANALYZE TABLE TARGET.result_references_oc COMPUTE STATISTICS;
create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_citations_oc stored as parquet as select * from SOURCE.result_citations_oc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_citations_oc; ANALYZE TABLE TARGET.result_citations_oc COMPUTE STATISTICS;
create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_classifications stored as parquet as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_classifications; ANALYZE TABLE TARGET.result_classifications COMPUTE STATISTICS;
create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_apc stored as parquet as select * from SOURCE.result_apc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_apc; ANALYZE TABLE TARGET.result_apc COMPUTE STATISTICS;
create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_concepts stored as parquet as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_concepts; ANALYZE TABLE TARGET.result_concepts COMPUTE STATISTICS;
create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_datasources stored as parquet as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_datasources; ANALYZE TABLE TARGET.result_datasources COMPUTE STATISTICS;
create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_fundercount stored as parquet as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_fundercount; ANALYZE TABLE TARGET.result_fundercount COMPUTE STATISTICS;
create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_gold stored as parquet as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_gold; ANALYZE TABLE TARGET.result_gold COMPUTE STATISTICS;
create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_greenoa stored as parquet as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_greenoa; ANALYZE TABLE TARGET.result_greenoa COMPUTE STATISTICS;
create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_languages stored as parquet as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_languages; ANALYZE TABLE TARGET.result_languages COMPUTE STATISTICS;
create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_licenses stored as parquet as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_licenses; ANALYZE TABLE TARGET.result_licenses COMPUTE STATISTICS;
create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized; create table TARGET.licenses_normalized STORED AS PARQUET as select * from SOURCE.licenses_normalized;
ANALYZE TABLE TARGET.licenses_normalized COMPUTE STATISTICS;
create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_oids stored as parquet as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_oids; ANALYZE TABLE TARGET.result_oids COMPUTE STATISTICS;
create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_organization stored as parquet as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_organization; ANALYZE TABLE TARGET.result_organization COMPUTE STATISTICS;
create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_peerreviewed stored as parquet as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_peerreviewed; ANALYZE TABLE TARGET.result_peerreviewed COMPUTE STATISTICS;
create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_pids stored as parquet as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_pids; ANALYZE TABLE TARGET.result_pids COMPUTE STATISTICS;
create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_projectcount stored as parquet as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_projectcount; ANALYZE TABLE TARGET.result_projectcount COMPUTE STATISTICS;
create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_projects stored as parquet as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_projects; ANALYZE TABLE TARGET.result_projects COMPUTE STATISTICS;
create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_refereed stored as parquet as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_refereed; ANALYZE TABLE TARGET.result_refereed COMPUTE STATISTICS;
create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_sources stored as parquet as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_sources; ANALYZE TABLE TARGET.result_sources COMPUTE STATISTICS;
create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_topics stored as parquet as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_topics; ANALYZE TABLE TARGET.result_topics COMPUTE STATISTICS;
create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.result_fos stored as parquet as select * from SOURCE.result_fos orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_fos; ANALYZE TABLE TARGET.result_fos COMPUTE STATISTICS;
create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result); create view TARGET.foo1 as select * from SOURCE.result_result rr where rr.source in (select id from TARGET.result);
create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result); create view TARGET.foo2 as select * from SOURCE.result_result rr where rr.target in (select id from TARGET.result);
create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou; create table TARGET.result_result STORED AS PARQUET as select distinct * from (select * from TARGET.foo1 union all select * from TARGET.foo2) foufou;
drop view TARGET.foo1; drop view TARGET.foo1;
drop view TARGET.foo2; drop view TARGET.foo2;
compute stats TARGET.result_result; ANALYZE TABLE TARGET.result_result COMPUTE STATISTICS;
-- datasources -- datasources
create view if not exists TARGET.datasource as select * from SOURCE.datasource; create view if not exists TARGET.datasource as select * from SOURCE.datasource;
@ -140,7 +148,7 @@ create view if not exists TARGET.datasource_organizations as select * from SOURC
create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources; create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources; create table TARGET.datasource_results stored as parquet as select id as result, datasource as id from TARGET.result_datasources;
compute stats TARGET.datasource_results; ANALYZE TABLE TARGET.datasource_results COMPUTE STATISTICS;
-- organizations -- organizations
create view if not exists TARGET.organization as select * from SOURCE.organization; create view if not exists TARGET.organization as select * from SOURCE.organization;
@ -157,28 +165,28 @@ create view if not exists TARGET.project_resultcount as select * from SOURCE.pro
create view if not exists TARGET.project_classification as select * from SOURCE.project_classification; create view if not exists TARGET.project_classification as select * from SOURCE.project_classification;
create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects; create table TARGET.project_results stored as parquet as select id as result, project as id from TARGET.result_projects;
compute stats TARGET.project_results; ANALYZE TABLE TARGET.project_results COMPUTE STATISTICS;
-- indicators -- indicators
-- Sprint 1 ---- -- Sprint 1 ----
create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_green_oa stored as parquet as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_green_oa; ANALYZE TABLE TARGET.indi_pub_green_oa COMPUTE STATISTICS;
create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_grey_lit stored as parquet as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_grey_lit; ANALYZE TABLE TARGET.indi_pub_grey_lit COMPUTE STATISTICS;
create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_doi_from_crossref stored as parquet as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_doi_from_crossref; ANALYZE TABLE TARGET.indi_pub_doi_from_crossref COMPUTE STATISTICS;
-- Sprint 2 ---- -- Sprint 2 ----
create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_result_has_cc_licence stored as parquet as select * from SOURCE.indi_result_has_cc_licence orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_has_cc_licence; ANALYZE TABLE TARGET.indi_result_has_cc_licence COMPUTE STATISTICS;
create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_result_has_cc_licence_url stored as parquet as select * from SOURCE.indi_result_has_cc_licence_url orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_has_cc_licence_url; ANALYZE TABLE TARGET.indi_result_has_cc_licence_url COMPUTE STATISTICS;
create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_has_abstract stored as parquet as select * from SOURCE.indi_pub_has_abstract orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_has_abstract; ANALYZE TABLE TARGET.indi_pub_has_abstract COMPUTE STATISTICS;
create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_result_with_orcid stored as parquet as select * from SOURCE.indi_result_with_orcid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_with_orcid; ANALYZE TABLE TARGET.indi_result_with_orcid COMPUTE STATISTICS;
---- Sprint 3 ---- ---- Sprint 3 ----
create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_funded_result_with_fundref stored as parquet as select * from SOURCE.indi_funded_result_with_fundref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_funded_result_with_fundref; ANALYZE TABLE TARGET.indi_funded_result_with_fundref COMPUTE STATISTICS;
create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab; create view TARGET.indi_result_org_collab as select * from SOURCE.indi_result_org_collab;
create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab; create view TARGET.indi_result_org_country_collab as select * from SOURCE.indi_result_org_country_collab;
create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org; create view TARGET.indi_project_collab_org as select * from SOURCE.indi_project_collab_org;
@ -187,30 +195,30 @@ create view TARGET.indi_funder_country_collab as select * from SOURCE.indi_funde
create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab; create view TARGET.indi_result_country_collab as select * from SOURCE.indi_result_country_collab;
---- Sprint 4 ---- ---- Sprint 4 ----
create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_diamond stored as parquet as select * from SOURCE.indi_pub_diamond orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_diamond; ANALYZE TABLE TARGET.indi_pub_diamond COMPUTE STATISTICS;
create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_in_transformative stored as parquet as select * from SOURCE.indi_pub_in_transformative orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_in_transformative; ANALYZE TABLE TARGET.indi_pub_in_transformative COMPUTE STATISTICS;
create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_closed_other_open stored as parquet as select * from SOURCE.indi_pub_closed_other_open orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_closed_other_open; ANALYZE TABLE TARGET.indi_pub_closed_other_open COMPUTE STATISTICS;
---- Sprint 5 ---- ---- Sprint 5 ----
create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_result_no_of_copies stored as parquet as select * from SOURCE.indi_result_no_of_copies orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_result_no_of_copies; ANALYZE TABLE TARGET.indi_result_no_of_copies COMPUTE STATISTICS;
---- Sprint 6 ---- ---- Sprint 6 ----
create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_hybrid_oa_with_cc stored as parquet as select * from SOURCE.indi_pub_hybrid_oa_with_cc orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_hybrid_oa_with_cc; ANALYZE TABLE TARGET.indi_pub_hybrid_oa_with_cc COMPUTE STATISTICS;
create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); create table TARGET.indi_pub_downloads stored as parquet as select * from SOURCE.indi_pub_downloads orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads; ANALYZE TABLE TARGET.indi_pub_downloads COMPUTE STATISTICS;
create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); create table TARGET.indi_pub_downloads_datasource stored as parquet as select * from SOURCE.indi_pub_downloads_datasource orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads_datasource; ANALYZE TABLE TARGET.indi_pub_downloads_datasource COMPUTE STATISTICS;
create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); create table TARGET.indi_pub_downloads_year stored as parquet as select * from SOURCE.indi_pub_downloads_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads_year; ANALYZE TABLE TARGET.indi_pub_downloads_year COMPUTE STATISTICS;
create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id); create table TARGET.indi_pub_downloads_datasource_year stored as parquet as select * from SOURCE.indi_pub_downloads_datasource_year orig where exists (select 1 from TARGET.result r where r.id=orig.result_id);
compute stats TARGET.indi_pub_downloads_datasource_year; ANALYZE TABLE TARGET.indi_pub_downloads_datasource_year COMPUTE STATISTICS;
---- Sprint 7 ---- ---- Sprint 7 ----
create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_gold_oa stored as parquet as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_gold_oa; ANALYZE TABLE TARGET.indi_pub_gold_oa COMPUTE STATISTICS;
create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_hybrid stored as parquet as select * from SOURCE.indi_pub_hybrid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_hybrid; ANALYZE TABLE TARGET.indi_pub_hybrid COMPUTE STATISTICS;
create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness; create view TARGET.indi_org_fairness as select * from SOURCE.indi_org_fairness;
create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr; create view TARGET.indi_org_fairness_pub_pr as select * from SOURCE.indi_org_fairness_pub_pr;
create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year; create view TARGET.indi_org_fairness_pub_year as select * from SOURCE.indi_org_fairness_pub_year;
@ -221,11 +229,12 @@ create view TARGET.indi_org_findable as select * from SOURCE.indi_org_findable;
create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess; create view TARGET.indi_org_openess as select * from SOURCE.indi_org_openess;
create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year; create view TARGET.indi_org_openess_year as select * from SOURCE.indi_org_openess_year;
create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_has_preprint stored as parquet as select * from SOURCE.indi_pub_has_preprint orig where exists (select 1 from TARGET.result r where r.id=orig.id);
ANALYZE TABLE TARGET.indi_pub_has_preprint COMPUTE STATISTICS;
create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_pub_in_subscribed stored as parquet as select * from SOURCE.indi_pub_in_subscribed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
ANALYZE TABLE TARGET.indi_pub_in_subscribed COMPUTE STATISTICS;
create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id); create table TARGET.indi_result_with_pid stored as parquet as select * from SOURCE.indi_result_with_pid orig where exists (select 1 from TARGET.result r where r.id=orig.id);
ANALYZE TABLE TARGET.indi_result_with_pid COMPUTE STATISTICS;
--create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); --create table TARGET.indi_datasets_gold_oa stored as parquet as select * from SOURCE.indi_datasets_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
--compute stats TARGET.indi_datasets_gold_oa; --compute stats TARGET.indi_datasets_gold_oa;
--create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id); --create table TARGET.indi_software_gold_oa stored as parquet as select * from SOURCE.indi_software_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
--compute stats TARGET.indi_software_gold_oa; --compute stats TARGET.indi_software_gold_oa;

View File

@ -8,6 +8,8 @@ from ${stats_db_name}.result r
group by rl.id group by rl.id
) rln on rln.id=r.id; ) rln on rln.id=r.id;
ANALYZE TABLE ${observatory_db_name}.result_cc_licence COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_country stored as parquet as create table ${observatory_db_name}.result_affiliated_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -37,6 +39,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_year stored as parquet as create table ${observatory_db_name}.result_affiliated_year stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -66,6 +70,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_year COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_year_country stored as parquet as create table ${observatory_db_name}.result_affiliated_year_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -95,6 +101,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_year_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_datasource stored as parquet as create table ${observatory_db_name}.result_affiliated_datasource stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -126,6 +134,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_datasource_country stored as parquet as create table ${observatory_db_name}.result_affiliated_datasource_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -157,6 +167,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_datasource_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_organization stored as parquet as create table ${observatory_db_name}.result_affiliated_organization stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -186,6 +198,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_organization_country stored as parquet as create table ${observatory_db_name}.result_affiliated_organization_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -215,6 +229,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_organization_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_funder stored as parquet as create table ${observatory_db_name}.result_affiliated_funder stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -246,6 +262,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder COMPUTE STATISTICS;
create table ${observatory_db_name}.result_affiliated_funder_country stored as parquet as create table ${observatory_db_name}.result_affiliated_funder_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -277,6 +295,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_affiliated_funder_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_country stored as parquet as create table ${observatory_db_name}.result_deposited_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -308,6 +328,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_year stored as parquet as create table ${observatory_db_name}.result_deposited_year stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -339,6 +361,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year;
ANALYZE TABLE ${observatory_db_name}.result_deposited_year COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_year_country stored as parquet as create table ${observatory_db_name}.result_deposited_year_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -370,6 +394,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, r.year, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_year_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_datasource stored as parquet as create table ${observatory_db_name}.result_deposited_datasource stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -401,6 +427,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_datasource_country stored as parquet as create table ${observatory_db_name}.result_deposited_datasource_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -432,6 +460,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, d.name, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_datasource_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_organization stored as parquet as create table ${observatory_db_name}.result_deposited_organization stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -463,6 +493,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_organization COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_organization_country stored as parquet as create table ${observatory_db_name}.result_deposited_organization_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -494,6 +526,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, o.name, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_organization_country COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_funder stored as parquet as create table ${observatory_db_name}.result_deposited_funder stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -527,6 +561,8 @@ group by r.green, r.gold, case when rl.type is not null then true else false end
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder;
ANALYZE TABLE ${observatory_db_name}.result_deposited_funder COMPUTE STATISTICS;
create table ${observatory_db_name}.result_deposited_funder_country stored as parquet as create table ${observatory_db_name}.result_deposited_funder_country stored as parquet as
select select
count(distinct r.id) as total, count(distinct r.id) as total,
@ -558,4 +594,6 @@ from ${stats_db_name}.result r
left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id left outer join ${stats_db_name}.result_fundercount rfc on rfc.id=r.id
group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end, group by r.green, r.gold, case when rl.type is not null then true else false end, case when pids.pid is not null then true else false end,
case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract, case when r.access_mode in ('Open Access', 'Open Source') then true else false end, r.peer_reviewed, r.type, abstract,
cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name; cc_licence, r.authors > 1, rpc.count > 1, rfc.count > 1, p.funder, c.code, c.name;
ANALYZE TABLE ${observatory_db_name}.result_deposited_funder_country COMPUTE STATISTICS;

View File

@ -96,6 +96,6 @@ select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
where d.datainfo.deletedbyinference = false and d.datainfo.invisible=false; where d.datainfo.deletedbyinference = false and d.datainfo.invisible=false;
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results STORED AS PARQUET AS CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
SELECT datasource AS id, id AS result SELECT datasource AS id, id AS result
FROM ${stats_db_name}.result_datasources; FROM ${stats_db_name}.result_datasources;

View File

@ -74,7 +74,7 @@
</configuration> </configuration>
</global> </global>
<start to="Contexts"/> <start to="Step1"/>
<kill name="Kill"> <kill name="Kill">
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message> <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
@ -302,22 +302,22 @@
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param> <param>openaire_db_name=${openaire_db_name}</param>
</hive2> </hive2>
<ok to="Step19-finalize"/>
<error to="Kill"/>
</action>
<action name="Step19-finalize">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>finalizedb.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${stats_db_shadow_name}</argument>
<file>finalizedb.sh</file>
</shell>
<ok to="step20-createMonitorDB"/> <ok to="step20-createMonitorDB"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<!-- <action name="Step19-finalize">-->
<!-- <shell xmlns="uri:oozie:shell-action:0.1">-->
<!-- <job-tracker>${jobTracker}</job-tracker>-->
<!-- <name-node>${nameNode}</name-node>-->
<!-- <exec>finalizedb.sh</exec>-->
<!-- <argument>${stats_db_name}</argument>-->
<!-- <argument>${stats_db_shadow_name}</argument>-->
<!-- <file>finalizedb.sh</file>-->
<!-- </shell>-->
<!-- <ok to="step20-createMonitorDB"/>-->
<!-- <error to="Kill"/>-->
<!-- </action>-->
<action name="step20-createMonitorDB"> <action name="step20-createMonitorDB">
<shell xmlns="uri:oozie:shell-action:0.1"> <shell xmlns="uri:oozie:shell-action:0.1">
@ -355,67 +355,67 @@
<param>stats_db_name=${stats_db_name}</param> <param>stats_db_name=${stats_db_name}</param>
<param>observatory_db_name=${observatory_db_name}</param> <param>observatory_db_name=${observatory_db_name}</param>
</hive2> </hive2>
<ok to="step21-createObservatoryDB-post"/>
<error to="Kill"/>
</action>
<action name="step21-createObservatoryDB-post">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>observatory-post.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${observatory_db_name}</argument>
<argument>${observatory_db_shadow_name}</argument>
<file>observatory-post.sh</file>
</shell>
<ok to="step22-copyDataToImpalaCluster"/>
<error to="Kill"/>
</action>
<action name="step22-copyDataToImpalaCluster">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>copyDataToImpalaCluster.sh</exec>
<argument>${external_stats_db_name}</argument>
<argument>${stats_db_name}</argument>
<argument>${monitor_db_name}</argument>
<argument>${observatory_db_name}</argument>
<file>copyDataToImpalaCluster.sh</file>
</shell>
<ok to="step23-finalizeImpalaCluster"/>
<error to="Kill"/>
</action>
<action name="step23-finalizeImpalaCluster">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>finalizeImpalaCluster.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${stats_db_shadow_name}</argument>
<argument>${monitor_db_name}</argument>
<argument>${monitor_db_shadow_name}</argument>
<argument>${observatory_db_name}</argument>
<argument>${observatory_db_shadow_name}</argument>
<file>finalizeImpalaCluster.sh</file>
</shell>
<ok to="Step24-updateCache"/>
<error to="Kill"/>
</action>
<action name="Step24-updateCache">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>updateCache.sh</exec>
<argument>${stats_tool_api_url}</argument>
<file>updateCache.sh</file>
</shell>
<ok to="End"/> <ok to="End"/>
<error to="Kill"/> <error to="Kill"/>
</action> </action>
<!-- <action name="step21-createObservatoryDB-post">-->
<!-- <shell xmlns="uri:oozie:shell-action:0.1">-->
<!-- <job-tracker>${jobTracker}</job-tracker>-->
<!-- <name-node>${nameNode}</name-node>-->
<!-- <exec>observatory-post.sh</exec>-->
<!-- <argument>${stats_db_name}</argument>-->
<!-- <argument>${observatory_db_name}</argument>-->
<!-- <argument>${observatory_db_shadow_name}</argument>-->
<!-- <file>observatory-post.sh</file>-->
<!-- </shell>-->
<!-- <ok to="step22-copyDataToImpalaCluster"/>-->
<!-- <error to="Kill"/>-->
<!-- </action>-->
<!-- <action name="step22-copyDataToImpalaCluster">-->
<!-- <shell xmlns="uri:oozie:shell-action:0.1">-->
<!-- <job-tracker>${jobTracker}</job-tracker>-->
<!-- <name-node>${nameNode}</name-node>-->
<!-- <exec>copyDataToImpalaCluster.sh</exec>-->
<!-- <argument>${external_stats_db_name}</argument>-->
<!-- <argument>${stats_db_name}</argument>-->
<!-- <argument>${monitor_db_name}</argument>-->
<!-- <argument>${observatory_db_name}</argument>-->
<!-- <file>copyDataToImpalaCluster.sh</file>-->
<!-- </shell>-->
<!-- <ok to="step23-finalizeImpalaCluster"/>-->
<!-- <error to="Kill"/>-->
<!-- </action>-->
<!-- <action name="step23-finalizeImpalaCluster">-->
<!-- <shell xmlns="uri:oozie:shell-action:0.1">-->
<!-- <job-tracker>${jobTracker}</job-tracker>-->
<!-- <name-node>${nameNode}</name-node>-->
<!-- <exec>finalizeImpalaCluster.sh</exec>-->
<!-- <argument>${stats_db_name}</argument>-->
<!-- <argument>${stats_db_shadow_name}</argument>-->
<!-- <argument>${monitor_db_name}</argument>-->
<!-- <argument>${monitor_db_shadow_name}</argument>-->
<!-- <argument>${observatory_db_name}</argument>-->
<!-- <argument>${observatory_db_shadow_name}</argument>-->
<!-- <file>finalizeImpalaCluster.sh</file>-->
<!-- </shell>-->
<!-- <ok to="End"/>-->
<!-- <error to="Kill"/>-->
<!-- </action>-->
<!-- <action name="Step24-updateCache">-->
<!-- <shell xmlns="uri:oozie:shell-action:0.1">-->
<!-- <job-tracker>${jobTracker}</job-tracker>-->
<!-- <name-node>${nameNode}</name-node>-->
<!-- <exec>updateCache.sh</exec>-->
<!-- <argument>${stats_tool_api_url}</argument>-->
<!-- <file>updateCache.sh</file>-->
<!-- </shell>-->
<!-- <ok to="End"/>-->
<!-- <error to="Kill"/>-->
<!-- </action>-->
<end name="End"/> <end name="End"/>
</workflow-app> </workflow-app>