code formatting

This commit is contained in:
Claudio Atzori 2020-05-11 17:38:08 +02:00
parent 6d0b11252e
commit c6b028f2af
25 changed files with 491 additions and 476 deletions

View File

@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.common;
import java.util.Map;
@ -65,216 +66,216 @@ public class ModelSupport {
static {
relationInverseMap
.put(
"personResult_authorship_isAuthorOf", new RelationInverse()
.setRelation("isAuthorOf")
.setInverse("hasAuthor")
.setRelType("personResult")
.setSubReltype("authorship"));
.put(
"personResult_authorship_isAuthorOf", new RelationInverse()
.setRelation("isAuthorOf")
.setInverse("hasAuthor")
.setRelType("personResult")
.setSubReltype("authorship"));
relationInverseMap
.put(
"personResult_authorship_hasAuthor", new RelationInverse()
.setInverse("isAuthorOf")
.setRelation("hasAuthor")
.setRelType("personResult")
.setSubReltype("authorship"));
.put(
"personResult_authorship_hasAuthor", new RelationInverse()
.setInverse("isAuthorOf")
.setRelation("hasAuthor")
.setRelType("personResult")
.setSubReltype("authorship"));
relationInverseMap
.put(
"projectOrganization_participation_isParticipant", new RelationInverse()
.setRelation("isParticipant")
.setInverse("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
.put(
"projectOrganization_participation_isParticipant", new RelationInverse()
.setRelation("isParticipant")
.setInverse("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
relationInverseMap
.put(
"projectOrganization_participation_hasParticipant", new RelationInverse()
.setInverse("isParticipant")
.setRelation("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
.put(
"projectOrganization_participation_hasParticipant", new RelationInverse()
.setInverse("isParticipant")
.setRelation("hasParticipant")
.setRelType("projectOrganization")
.setSubReltype("participation"));
relationInverseMap
.put(
"resultOrganization_affiliation_hasAuthorInstitution", new RelationInverse()
.setRelation("hasAuthorInstitution")
.setInverse("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
.put(
"resultOrganization_affiliation_hasAuthorInstitution", new RelationInverse()
.setRelation("hasAuthorInstitution")
.setInverse("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
relationInverseMap
.put(
"resultOrganization_affiliation_isAuthorInstitutionOf", new RelationInverse()
.setInverse("hasAuthorInstitution")
.setRelation("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
.put(
"resultOrganization_affiliation_isAuthorInstitutionOf", new RelationInverse()
.setInverse("hasAuthorInstitution")
.setRelation("isAuthorInstitutionOf")
.setRelType("resultOrganization")
.setSubReltype("affiliation"));
relationInverseMap
.put(
"organizationOrganization_dedup_merges", new RelationInverse()
.setRelation("merges")
.setInverse("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
.put(
"organizationOrganization_dedup_merges", new RelationInverse()
.setRelation("merges")
.setInverse("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
relationInverseMap
.put(
"organizationOrganization_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
.put(
"organizationOrganization_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("organizationOrganization")
.setSubReltype("dedup"));
relationInverseMap
.put(
"organizationOrganization_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("organizationOrganization")
.setSubReltype("dedupSimilarity"));
.put(
"organizationOrganization_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("organizationOrganization")
.setSubReltype("dedupSimilarity"));
relationInverseMap
.put(
"resultProject_outcome_isProducedBy", new RelationInverse()
.setRelation("isProducedBy")
.setInverse("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
.put(
"resultProject_outcome_isProducedBy", new RelationInverse()
.setRelation("isProducedBy")
.setInverse("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
relationInverseMap
.put(
"resultProject_outcome_produces", new RelationInverse()
.setInverse("isProducedBy")
.setRelation("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
.put(
"resultProject_outcome_produces", new RelationInverse()
.setInverse("isProducedBy")
.setRelation("produces")
.setRelType("resultProject")
.setSubReltype("outcome"));
relationInverseMap
.put(
"projectPerson_contactPerson_isContact", new RelationInverse()
.setRelation("isContact")
.setInverse("hasContact")
.setRelType("projectPerson")
.setSubReltype("contactPerson"));
.put(
"projectPerson_contactPerson_isContact", new RelationInverse()
.setRelation("isContact")
.setInverse("hasContact")
.setRelType("projectPerson")
.setSubReltype("contactPerson"));
relationInverseMap
.put(
"projectPerson_contactPerson_hasContact", new RelationInverse()
.setInverse("isContact")
.setRelation("hasContact")
.setRelType("personPerson")
.setSubReltype("coAuthorship"));
.put(
"projectPerson_contactPerson_hasContact", new RelationInverse()
.setInverse("isContact")
.setRelation("hasContact")
.setRelType("personPerson")
.setSubReltype("coAuthorship"));
relationInverseMap
.put(
"personPerson_coAuthorship_isCoauthorOf", new RelationInverse()
.setInverse("isCoAuthorOf")
.setRelation("isCoAuthorOf")
.setRelType("personPerson")
.setSubReltype("coAuthorship"));
.put(
"personPerson_coAuthorship_isCoauthorOf", new RelationInverse()
.setInverse("isCoAuthorOf")
.setRelation("isCoAuthorOf")
.setRelType("personPerson")
.setSubReltype("coAuthorship"));
relationInverseMap
.put(
"personPerson_dedup_merges", new RelationInverse()
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("personPerson")
.setSubReltype("dedup"));
.put(
"personPerson_dedup_merges", new RelationInverse()
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("personPerson")
.setSubReltype("dedup"));
relationInverseMap
.put(
"personPerson_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("personPerson")
.setSubReltype("dedup"));
.put(
"personPerson_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("personPerson")
.setSubReltype("dedup"));
relationInverseMap
.put(
"personPerson_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("personPerson")
.setSubReltype("dedupSimilarity"));
.put(
"personPerson_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("personPerson")
.setSubReltype("dedupSimilarity"));
relationInverseMap
.put(
"datasourceOrganization_provision_isProvidedBy", new RelationInverse()
.setInverse("provides")
.setRelation("isProvidedBy")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
.put(
"datasourceOrganization_provision_isProvidedBy", new RelationInverse()
.setInverse("provides")
.setRelation("isProvidedBy")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
relationInverseMap
.put(
"datasourceOrganization_provision_provides", new RelationInverse()
.setInverse("isProvidedBy")
.setRelation("provides")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
.put(
"datasourceOrganization_provision_provides", new RelationInverse()
.setInverse("isProvidedBy")
.setRelation("provides")
.setRelType("datasourceOrganization")
.setSubReltype("provision"));
relationInverseMap
.put(
"resultResult_similarity_hasAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("isAmongTopNSimilarDocuments")
.setRelation("hasAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
.put(
"resultResult_similarity_hasAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("isAmongTopNSimilarDocuments")
.setRelation("hasAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_relationship_isRelatedTo", new RelationInverse()
.setInverse("isRelatedTo")
.setRelation("isRelatedTo")
.setRelType("resultResult")
.setSubReltype("relationship"));
.put(
"resultResult_relationship_isRelatedTo", new RelationInverse()
.setInverse("isRelatedTo")
.setRelation("isRelatedTo")
.setRelType("resultResult")
.setSubReltype("relationship"));
relationInverseMap
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
.put(
"resultResult_similarity_isAmongTopNSimilarDocuments", new RelationInverse()
.setInverse("hasAmongTopNSimilarDocuments")
.setRelation("isAmongTopNSimilarDocuments")
.setRelType("resultResult")
.setSubReltype("similarity"));
relationInverseMap
.put(
"resultResult_supplement_isSupplementTo", new RelationInverse()
.setInverse("isSupplementedBy")
.setRelation("isSupplementTo")
.setRelType("resultResult")
.setSubReltype("supplement"));
.put(
"resultResult_supplement_isSupplementTo", new RelationInverse()
.setInverse("isSupplementedBy")
.setRelation("isSupplementTo")
.setRelType("resultResult")
.setSubReltype("supplement"));
relationInverseMap
.put(
"resultResult_supplement_isSupplementedBy", new RelationInverse()
.setInverse("isSupplementTo")
.setRelation("isSupplementedBy")
.setRelType("resultResult")
.setSubReltype("supplement"));
.put(
"resultResult_supplement_isSupplementedBy", new RelationInverse()
.setInverse("isSupplementTo")
.setRelation("isSupplementedBy")
.setRelType("resultResult")
.setSubReltype("supplement"));
relationInverseMap
.put(
"resultResult_part_isPartOf", new RelationInverse()
.setInverse("hasPart")
.setRelation("isPartOf")
.setRelType("resultResult")
.setSubReltype("part"));
.put(
"resultResult_part_isPartOf", new RelationInverse()
.setInverse("hasPart")
.setRelation("isPartOf")
.setRelType("resultResult")
.setSubReltype("part"));
relationInverseMap
.put(
"resultResult_part_hasPart", new RelationInverse()
.setInverse("isPartOf")
.setRelation("hasPart")
.setRelType("resultResult")
.setSubReltype("part"));
.put(
"resultResult_part_hasPart", new RelationInverse()
.setInverse("isPartOf")
.setRelation("hasPart")
.setRelType("resultResult")
.setSubReltype("part"));
relationInverseMap
.put(
"resultResult_dedup_merges", new RelationInverse()
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("resultResult")
.setSubReltype("dedup"));
.put(
"resultResult_dedup_merges", new RelationInverse()
.setInverse("isMergedIn")
.setRelation("merges")
.setRelType("resultResult")
.setSubReltype("dedup"));
relationInverseMap
.put(
"resultResult_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("resultResult")
.setSubReltype("dedup"));
.put(
"resultResult_dedup_isMergedIn", new RelationInverse()
.setInverse("merges")
.setRelation("isMergedIn")
.setRelType("resultResult")
.setSubReltype("dedup"));
relationInverseMap
.put(
"resultResult_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("resultResult")
.setSubReltype("dedupSimilarity"));
.put(
"resultResult_dedupSimilarity_isSimilarTo", new RelationInverse()
.setInverse("isSimilarTo")
.setRelation("isSimilarTo")
.setRelType("resultResult")
.setSubReltype("dedupSimilarity"));
}
@ -293,7 +294,7 @@ public class ModelSupport {
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Y superClazzObject) {
X subClazzObject, Y superClazzObject) {
return isSubClass(subClazzObject.getClass(), superClazzObject.getClass());
}
@ -307,7 +308,7 @@ public class ModelSupport {
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
X subClazzObject, Class<Y> superClazz) {
X subClazzObject, Class<Y> superClazz) {
return isSubClass(subClazzObject.getClass(), superClazz);
}
@ -321,7 +322,7 @@ public class ModelSupport {
* @return True if X is a subclass of Y
*/
public static <X extends Oaf, Y extends Oaf> Boolean isSubClass(
Class<X> subClazz, Class<Y> superClazz) {
Class<X> subClazz, Class<Y> superClazz) {
return superClazz.isAssignableFrom(subClazz);
}
@ -333,32 +334,32 @@ public class ModelSupport {
*/
public static <T extends Oaf> Class<T>[] getOafModelClasses() {
return new Class[] {
Author.class,
Context.class,
Country.class,
DataInfo.class,
Dataset.class,
Datasource.class,
ExternalReference.class,
ExtraInfo.class,
Field.class,
GeoLocation.class,
Instance.class,
Journal.class,
KeyValue.class,
Oaf.class,
OafEntity.class,
OAIProvenance.class,
Organization.class,
OriginDescription.class,
OtherResearchProduct.class,
Project.class,
Publication.class,
Qualifier.class,
Relation.class,
Result.class,
Software.class,
StructuredProperty.class
Author.class,
Context.class,
Country.class,
DataInfo.class,
Dataset.class,
Datasource.class,
ExternalReference.class,
ExtraInfo.class,
Field.class,
GeoLocation.class,
Instance.class,
Journal.class,
KeyValue.class,
Oaf.class,
OafEntity.class,
OAIProvenance.class,
Organization.class,
OriginDescription.class,
OtherResearchProduct.class,
Project.class,
Publication.class,
Qualifier.class,
Relation.class,
Result.class,
Software.class,
StructuredProperty.class
};
}
@ -372,10 +373,10 @@ public class ModelSupport {
public static String getScheme(final String sourceType, final String targetType) {
return String
.format(
schemeTemplate,
entityMapping.get(EntityType.valueOf(sourceType)).name(),
entityMapping.get(EntityType.valueOf(targetType)).name());
.format(
schemeTemplate,
entityMapping.get(EntityType.valueOf(sourceType)).name(),
entityMapping.get(EntityType.valueOf(targetType)).name());
}
public static <T extends Oaf> Function<T, String> idFn() {
@ -390,38 +391,38 @@ public class ModelSupport {
private static <T extends Oaf> String idFnForRelation(T t) {
Relation r = (Relation) t;
return Optional
.ofNullable(r.getSource())
.map(
source -> Optional
.ofNullable(r.getTarget())
.map(
target -> Optional
.ofNullable(r.getRelType())
.map(
relType -> Optional
.ofNullable(r.getSubRelType())
.map(
subRelType -> Optional
.ofNullable(r.getRelClass())
.map(
relClass -> String
.join(
source,
target,
relType,
subRelType,
relClass))
.orElse(
String
.join(
source,
target,
relType,
subRelType)))
.orElse(String.join(source, target, relType)))
.orElse(String.join(source, target)))
.orElse(source))
.orElse(null);
.ofNullable(r.getSource())
.map(
source -> Optional
.ofNullable(r.getTarget())
.map(
target -> Optional
.ofNullable(r.getRelType())
.map(
relType -> Optional
.ofNullable(r.getSubRelType())
.map(
subRelType -> Optional
.ofNullable(r.getRelClass())
.map(
relClass -> String
.join(
source,
target,
relType,
subRelType,
relClass))
.orElse(
String
.join(
source,
target,
relType,
subRelType)))
.orElse(String.join(source, target, relType)))
.orElse(String.join(source, target)))
.orElse(source))
.orElse(null);
}
private static <T extends Oaf> String idFnForOafEntity(T t) {

View File

@ -73,19 +73,6 @@ public class PrepareMergedRelationJob {
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(outputPath);
// relation.createOrReplaceTempView("relation");
//
// spark
// .sql(
// "Select * from relation " +
// "where relclass = 'merges' " +
// "and datainfo.deletedbyinference = false")
// .as(Encoders.bean(Relation.class))
// .toJSON()
// .write()
// .mode(SaveMode.Overwrite)
// .option("compression", "gzip")
// .text(outputPath);
}
public static org.apache.spark.sql.Dataset<Relation> readRelations(

View File

@ -65,8 +65,7 @@ public class ReadBlacklistFromDB implements Closeable {
}
}
public void execute(final String sql, final Function<ResultSet, List<Relation>> producer)
throws Exception {
public void execute(final String sql, final Function<ResultSet, List<Relation>> producer) throws Exception {
final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(r -> writeRelation(r));

View File

@ -84,7 +84,7 @@ public class SparkRemoveBlacklistedRelationJob {
.joinWith(
mergesRelation, blackListed.col("source").equalTo(mergesRelation.col("target")),
"left_outer")
.map(c -> {
.map((MapFunction<Tuple2<Relation, Relation>, Relation>) c -> {
Optional
.ofNullable(c._2())
.ifPresent(mr -> c._1().setSource(mr.getSource()));
@ -95,7 +95,7 @@ public class SparkRemoveBlacklistedRelationJob {
.joinWith(
mergesRelation, dedupSource.col("target").equalTo(mergesRelation.col("target")),
"left_outer")
.map(c -> {
.map((MapFunction<Tuple2<Relation, Relation>, Relation>) c -> {
Optional
.ofNullable(c._2())
.ifPresent(mr -> c._1().setTarget(mr.getSource()));
@ -107,7 +107,6 @@ public class SparkRemoveBlacklistedRelationJob {
.mode(SaveMode.Overwrite)
.json(blacklistPath + "/deduped");
inputRelation
.joinWith(
dedupBL, (inputRelation
@ -118,26 +117,23 @@ public class SparkRemoveBlacklistedRelationJob {
.col("target")
.equalTo(dedupBL.col("target")))),
"left_outer")
.map(c -> {
Relation ir = c._1();
Optional<Relation> obl = Optional.ofNullable(c._2());
if (obl.isPresent()) {
if (ir.equals(obl.get())) {
return null;
.map((MapFunction<Tuple2<Relation, Relation>, Relation>) c -> {
Relation ir = c._1();
Optional<Relation> obl = Optional.ofNullable(c._2());
if (obl.isPresent()) {
if (ir.equals(obl.get())) {
return null;
}
}
}
return ir;
}, Encoders.bean(Relation.class))
return ir;
}, Encoders.bean(Relation.class))
.filter(Objects::nonNull)
.write()
.mode(SaveMode.Overwrite)
.option("compression", "gzip")
.json(outputPath);
}
public static org.apache.spark.sql.Dataset<Relation> readRelations(
SparkSession spark, String inputPath) {
return spark

View File

@ -19,6 +19,7 @@ import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class BlackListTest {

View File

@ -1,11 +1,10 @@
package eu.dnetlib.dhp.bulktag;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.gson.Gson;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.bulktag.community.*;
import eu.dnetlib.dhp.schema.oaf.Result;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction;
@ -16,9 +15,12 @@ import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.Optional;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.gson.Gson;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.bulktag.community.*;
import eu.dnetlib.dhp.schema.oaf.Result;
public class SparkBulkTagJob {

View File

@ -1,14 +1,15 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.google.gson.Gson;
/** Created by miriam on 01/08/2018. */
public class Community implements Serializable {

View File

@ -1,15 +1,6 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.common.collect.Lists;
import com.google.common.collect.Maps;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import eu.dnetlib.dhp.bulktag.criteria.InterfaceAdapter;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.HashMap;
@ -17,6 +8,17 @@ import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.google.common.collect.Lists;
import com.google.common.collect.Maps;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import eu.dnetlib.dhp.bulktag.criteria.InterfaceAdapter;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
/** Created by miriam on 02/08/2018. */
public class CommunityConfiguration implements Serializable {

View File

@ -1,14 +1,11 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.common.collect.Lists;
import com.google.common.collect.Maps;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import eu.dnetlib.dhp.bulktag.criteria.InterfaceAdapter;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolverFactory;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.apache.commons.lang3.StringUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
@ -17,10 +14,15 @@ import org.dom4j.DocumentException;
import org.dom4j.Node;
import org.dom4j.io.SAXReader;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import com.google.common.collect.Lists;
import com.google.common.collect.Maps;
import com.google.gson.Gson;
import com.google.gson.GsonBuilder;
import eu.dnetlib.dhp.bulktag.criteria.InterfaceAdapter;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolverFactory;
/** Created by miriam on 03/08/2018. */
public class CommunityConfigurationFactory {

View File

@ -1,12 +1,12 @@
package eu.dnetlib.dhp.bulktag.community;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import java.io.Serializable;
import java.lang.reflect.InvocationTargetException;
import eu.dnetlib.dhp.bulktag.criteria.Selection;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
public class Constraint implements Serializable {
private String verb;
private String field;

View File

@ -1,12 +1,6 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import java.io.Serializable;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Type;
@ -14,6 +8,14 @@ import java.util.Collection;
import java.util.List;
import java.util.Map;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
/** Created by miriam on 02/08/2018. */
public class Constraints implements Serializable {
private static final Log log = LogFactory.getLog(Constraints.class);

View File

@ -1,10 +1,10 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import java.io.Serializable;
import com.google.gson.Gson;
/** Created by miriam on 03/08/2018. */
public class Pair<A, B> implements Serializable {
private A fst;

View File

@ -1,13 +1,15 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import java.io.Serializable;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.dom4j.Node;
import java.io.Serializable;
import com.google.gson.Gson;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
/** Created by miriam on 01/08/2018. */
public class Provider implements Serializable {

View File

@ -1,13 +1,15 @@
package eu.dnetlib.dhp.bulktag.community;
import java.util.List;
import org.dom4j.DocumentException;
import com.google.common.base.Joiner;
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
import org.dom4j.DocumentException;
import java.util.List;
public class QueryInformationSystem {
private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "

View File

@ -1,19 +1,21 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import com.jayway.jsonpath.DocumentContext;
import com.jayway.jsonpath.JsonPath;
import eu.dnetlib.dhp.schema.oaf.*;
import org.apache.commons.lang3.StringUtils;
import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.*;
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
import java.io.Serializable;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.*;
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
import org.apache.commons.lang3.StringUtils;
import com.google.gson.Gson;
import com.jayway.jsonpath.DocumentContext;
import com.jayway.jsonpath.JsonPath;
import eu.dnetlib.dhp.schema.oaf.*;
/** Created by miriam on 02/08/2018. */
public class ResultTagger implements Serializable {
@ -50,7 +52,7 @@ public class ResultTagger implements Serializable {
}
public <R extends Result> R enrichContextCriteria(
final R result, final CommunityConfiguration conf, final Map<String, String> criteria) {
final R result, final CommunityConfiguration conf, final Map<String, String> criteria) {
// }
// public Result enrichContextCriteria(final Result result, final CommunityConfiguration

View File

@ -1,16 +1,17 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import java.io.Serializable;
import java.lang.reflect.Type;
import java.util.Collection;
import java.util.List;
import java.util.Map;
import com.google.gson.Gson;
import com.google.gson.reflect.TypeToken;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
public class SelectionConstraints implements Serializable {
private List<Constraints> criteria;

View File

@ -1,10 +1,11 @@
package eu.dnetlib.dhp.bulktag.community;
import com.google.gson.Gson;
import java.io.Serializable;
import org.dom4j.Node;
import java.io.Serializable;
import com.google.gson.Gson;
/** Created by miriam on 01/08/2018. */
public class ZenodoCommunity implements Serializable {

View File

@ -1,10 +1,10 @@
package eu.dnetlib.dhp.bulktag.criteria;
import com.google.gson.*;
import java.lang.reflect.Type;
import com.google.gson.*;
public class InterfaceAdapter implements JsonSerializer, JsonDeserializer {
private static final String CLASSNAME = "CLASSNAME";

View File

@ -1,16 +1,16 @@
package eu.dnetlib.dhp.bulktag.criteria;
import io.github.classgraph.ClassGraph;
import io.github.classgraph.ClassInfo;
import io.github.classgraph.ClassInfoList;
import io.github.classgraph.ScanResult;
import java.io.Serializable;
import java.lang.reflect.InvocationTargetException;
import java.util.Map;
import java.util.stream.Collectors;
import io.github.classgraph.ClassGraph;
import io.github.classgraph.ClassInfo;
import io.github.classgraph.ClassInfoList;
import io.github.classgraph.ScanResult;
public class VerbResolver implements Serializable {
private Map<String, Class<Selection>> map = null; // = new HashMap<>();
private final ClassGraph classgraph = new ClassGraph();

View File

@ -1,11 +1,12 @@
package eu.dnetlib.dhp.bulktag;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Software;
import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.ZENODO_COMMUNITY_INDICATOR;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import org.apache.commons.io.FileUtils;
import org.apache.commons.io.IOUtils;
import org.apache.spark.SparkConf;
@ -18,15 +19,15 @@ import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import com.fasterxml.jackson.databind.ObjectMapper;
import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.ZENODO_COMMUNITY_INDICATOR;
import eu.dnetlib.dhp.schema.oaf.Dataset;
import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.schema.oaf.Software;
public class BulkTagJobTest {
@ -34,12 +35,11 @@ public class BulkTagJobTest {
public static final String MOCK_IS_LOOK_UP_URL = "BASEURL:8280/is/services/isLookUp";
public static final String pathMap =
"{ \"author\" : \"$['author'][*]['fullname']\","
+ " \"title\" : \"$['title'][*]['value']\","
+ " \"orcid\" : \"$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']\","
+ " \"contributor\" : \"$['contributor'][*]['value']\","
+ " \"description\" : \"$['description'][*]['value']\"}";
public static final String pathMap = "{ \"author\" : \"$['author'][*]['fullname']\","
+ " \"title\" : \"$['title'][*]['value']\","
+ " \"orcid\" : \"$['author'][*]['pid'][*][?(@['key']=='ORCID')]['value']\","
+ " \"contributor\" : \"$['contributor'][*]['value']\","
+ " \"description\" : \"$['description'][*]['value']\"}";
private static SparkSession spark;
@ -97,7 +97,8 @@ public class BulkTagJobTest {
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-sourcePath", getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates").getPath(),
"-sourcePath",
getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates").getPath(),
"-taggingConf", taggingConf,
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
"-outputPath", workingDir.toString() + "/dataset",
@ -129,8 +130,8 @@ public class BulkTagJobTest {
@Test
public void bulktagBySubjectNoPreviousContextTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/nocontext")
.getPath();
.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/nocontext")
.getPath();
final String pathMap = BulkTagJobTest.pathMap;
SparkBulkTagJob
.main(
@ -139,7 +140,7 @@ public class BulkTagJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-sourcePath", sourcePath,
"-taggingConf", taggingConf,
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
"-outputPath", workingDir.toString() + "/dataset",
"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
"-pathMap", pathMap
@ -225,9 +226,9 @@ public class BulkTagJobTest {
@Test
public void bulktagBySubjectPreviousContextNoProvenanceTest() throws Exception {
final String sourcePath = getClass()
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/contextnoprovenance")
.getPath();
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/contextnoprovenance")
.getPath();
final String pathMap = BulkTagJobTest.pathMap;
SparkBulkTagJob
.main(
@ -236,7 +237,7 @@ public class BulkTagJobTest {
"-isSparkSessionManaged", Boolean.FALSE.toString(),
"-sourcePath", sourcePath,
"-taggingConf", taggingConf,
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
"-outputPath", workingDir.toString() + "/dataset",
"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
"-pathMap", pathMap
@ -307,8 +308,8 @@ public class BulkTagJobTest {
@Test
public void bulktagByDatasourceTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/bulktag/sample/publication/update_datasource")
.getPath();
.getResource("/eu/dnetlib/dhp/bulktag/sample/publication/update_datasource")
.getPath();
SparkBulkTagJob
.main(
new String[] {
@ -379,9 +380,9 @@ public class BulkTagJobTest {
@Test
public void bulktagByZenodoCommunityTest() throws Exception {
final String sourcePath = getClass()
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/otherresearchproduct/update_zenodocommunity")
.getPath();
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/otherresearchproduct/update_zenodocommunity")
.getPath();
SparkBulkTagJob
.main(
new String[] {
@ -501,8 +502,8 @@ public class BulkTagJobTest {
@Test
public void bulktagBySubjectDatasourceTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject_datasource")
.getPath();
.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject_datasource")
.getPath();
SparkBulkTagJob
.main(
new String[] {
@ -726,9 +727,9 @@ public class BulkTagJobTest {
public void bulktagDatasourcewithConstraintsTest() throws Exception {
final String sourcePath = getClass()
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints")
.getPath();
.getResource(
"/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints")
.getPath();
SparkBulkTagJob
.main(
new String[] {

View File

@ -1,21 +1,23 @@
package eu.dnetlib.dhp.bulktag;
import com.google.gson.Gson;
import eu.dnetlib.dhp.bulktag.community.CommunityConfiguration;
import eu.dnetlib.dhp.bulktag.community.CommunityConfigurationFactory;
import eu.dnetlib.dhp.bulktag.community.Constraint;
import eu.dnetlib.dhp.bulktag.community.SelectionConstraints;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
import java.io.IOException;
import java.lang.reflect.InvocationTargetException;
import java.util.*;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.dom4j.DocumentException;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
import java.io.IOException;
import java.lang.reflect.InvocationTargetException;
import java.util.*;
import com.google.gson.Gson;
import eu.dnetlib.dhp.bulktag.community.CommunityConfiguration;
import eu.dnetlib.dhp.bulktag.community.CommunityConfigurationFactory;
import eu.dnetlib.dhp.bulktag.community.Constraint;
import eu.dnetlib.dhp.bulktag.community.SelectionConstraints;
import eu.dnetlib.dhp.bulktag.criteria.VerbResolver;
/** Created by miriam on 03/08/2018. */
public class CommunityConfigurationFactoryTest {

View File

@ -103,7 +103,8 @@ public class CountryPropagationJobTest {
Assertions.assertEquals(0, verificationDs.filter("size(country) > 2").count());
Dataset<String> countryExploded = verificationDs
.flatMap((FlatMapFunction<Software, Country>) row -> row.getCountry().iterator(), Encoders.bean(Country.class))
.flatMap(
(FlatMapFunction<Software, Country>) row -> row.getCountry().iterator(), Encoders.bean(Country.class))
.map((MapFunction<Country, String>) c -> c.getClassid(), Encoders.STRING());
Assertions.assertEquals(9, countryExploded.count());
@ -123,10 +124,10 @@ public class CountryPropagationJobTest {
country_list
.stream()
.forEach(
c -> prova
.add(
new Tuple2<>(
row.getId(), c.getClassid())));
c -> prova
.add(
new Tuple2<>(
row.getId(), c.getClassid())));
return prova.iterator();
}, Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
@ -178,20 +179,20 @@ public class CountryPropagationJobTest {
Dataset<Tuple2<String, String>> countryExplodedWithCountryclassname = verificationDs
.flatMap(
(FlatMapFunction<Software, Tuple2<String, String>>) row -> {
List<Tuple2<String, String>> prova = new ArrayList();
List<Country> country_list = row.getCountry();
country_list
.stream()
.forEach(
c -> prova
.add(
new Tuple2<>(
row.getId(),
c.getClassname())));
return prova.iterator();
},
Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
(FlatMapFunction<Software, Tuple2<String, String>>) row -> {
List<Tuple2<String, String>> prova = new ArrayList();
List<Country> country_list = row.getCountry();
country_list
.stream()
.forEach(
c -> prova
.add(
new Tuple2<>(
row.getId(),
c.getClassname())));
return prova.iterator();
},
Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
countryExplodedWithCountryclassname.show(false);
Assertions
@ -239,22 +240,22 @@ public class CountryPropagationJobTest {
Dataset<Tuple2<String, String>> countryExplodedWithCountryProvenance = verificationDs
.flatMap(
(FlatMapFunction<Software, Tuple2<String, String>>) row -> {
List<Tuple2<String, String>> prova = new ArrayList();
List<Country> country_list = row.getCountry();
country_list
.stream()
.forEach(
c -> prova
.add(
new Tuple2<>(
row.getId(),
c
.getDataInfo()
.getInferenceprovenance())));
return prova.iterator();
},
Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
(FlatMapFunction<Software, Tuple2<String, String>>) row -> {
List<Tuple2<String, String>> prova = new ArrayList();
List<Country> country_list = row.getCountry();
country_list
.stream()
.forEach(
c -> prova
.add(
new Tuple2<>(
row.getId(),
c
.getDataInfo()
.getInferenceprovenance())));
return prova.iterator();
},
Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
Assertions
.assertEquals(

View File

@ -72,14 +72,15 @@ public class ProjectPropagationJobTest {
public void NoUpdateTest() throws Exception {
final String potentialUpdateDate = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/noupdates/potentialUpdates")
.getPath();
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/noupdates/potentialUpdates")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob.main(
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
@ -107,14 +108,15 @@ public class ProjectPropagationJobTest {
@Test
public void UpdateTenTest() throws Exception {
final String potentialUpdatePath = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/tenupdates/potentialUpdates")
.getPath();
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/tenupdates/potentialUpdates")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob.main(
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
@ -143,8 +145,8 @@ public class ProjectPropagationJobTest {
.assertEquals(
5,
verificationDs
.filter((FilterFunction<Relation>) r ->
r.getSource().startsWith("50")
.filter(
(FilterFunction<Relation>) r -> r.getSource().startsWith("50")
&& r.getTarget().startsWith("40")
&& r.getRelClass().equals("isProducedBy"))
.count());
@ -152,8 +154,8 @@ public class ProjectPropagationJobTest {
.assertEquals(
5,
verificationDs
.filter((FilterFunction<Relation>) r ->
r.getSource().startsWith("40")
.filter(
(FilterFunction<Relation>) r -> r.getSource().startsWith("40")
&& r.getTarget().startsWith("50")
&& r.getRelClass().equals("produces"))
.count());
@ -178,14 +180,15 @@ public class ProjectPropagationJobTest {
@Test
public void UpdateMixTest() throws Exception {
final String potentialUpdatepath = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/updatesmixed/potentialUpdates")
.getPath();
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/updatesmixed/potentialUpdates")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob.main(
.getResource(
"/eu/dnetlib/dhp/projecttoresult/preparedInfo/alreadyLinked")
.getPath();
SparkResultToProjectThroughSemRelJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
@ -217,8 +220,8 @@ public class ProjectPropagationJobTest {
.assertEquals(
4,
verificationDs
.filter((FilterFunction<Relation>) r ->
r.getSource().startsWith("50")
.filter(
(FilterFunction<Relation>) r -> r.getSource().startsWith("50")
&& r.getTarget().startsWith("40")
&& r.getRelClass().equals("isProducedBy"))
.count());
@ -226,8 +229,8 @@ public class ProjectPropagationJobTest {
.assertEquals(
4,
verificationDs
.filter((FilterFunction<Relation>) r ->
r.getSource().startsWith("40")
.filter(
(FilterFunction<Relation>) r -> r.getSource().startsWith("40")
&& r.getTarget().startsWith("50")
&& r.getRelClass().equals("produces"))
.count());

View File

@ -67,9 +67,10 @@ public class ResultToCommunityJobTest {
@Test
public void testSparkResultToCommunityFromOrganizationJob() throws Exception {
final String preparedInfoPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/preparedInfo")
.getPath();
SparkResultToCommunityFromOrganizationJob.main(
.getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/preparedInfo")
.getPath();
SparkResultToCommunityFromOrganizationJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),

View File

@ -69,15 +69,17 @@ public class ResultToOrganizationJobTest {
@Test
public void NoUpdateTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/noupdate_updatenomix")
.getPath();
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/noupdate_updatenomix")
.getPath();
final String datasourceOrganizationPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/noupdate/preparedInfo/datasourceOrganization")
.getPath();
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/noupdate/preparedInfo/datasourceOrganization")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/noupdate/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob.main(
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/noupdate/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
@ -109,15 +111,17 @@ public class ResultToOrganizationJobTest {
@Test
public void UpdateNoMixTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/noupdate_updatenomix")
.getPath();
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/noupdate_updatenomix")
.getPath();
final String datasourceOrganizationPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatenomix/preparedInfo/datasourceOrganization")
.getPath();
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatenomix/preparedInfo/datasourceOrganization")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatenomix/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob.main(
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatenomix/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),
@ -172,15 +176,17 @@ public class ResultToOrganizationJobTest {
@Test
public void UpdateMixTest() throws Exception {
final String sourcePath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/updatemix")
.getPath();
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/sample/updatemix")
.getPath();
final String datasourceOrganizationPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatemix/preparedInfo/datasourceOrganization")
.getPath();
.getResource(
"/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatemix/preparedInfo/datasourceOrganization")
.getPath();
final String alreadyLinkedPath = getClass()
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatemix/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob.main(
.getResource("/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/updatemix/preparedInfo/alreadyLinked")
.getPath();
SparkResultToOrganizationFromIstRepoJob
.main(
new String[] {
"-isTest", Boolean.TRUE.toString(),
"-isSparkSessionManaged", Boolean.FALSE.toString(),