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deleted hierarchical rels from ror action set

This commit is contained in:
Michele Artini 2022-05-16 09:39:54 +02:00 committed by Claudio Atzori
parent 922c6d66ef
commit 634869ce95
1 changed files with 11 additions and 51 deletions
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56
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/ror/GenerateRorActionSetJob.java
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@ -3,7 +3,6 @@ package eu.dnetlib.dhp.actionmanager.ror;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import static eu.dnetlib.dhp.schema.common.ModelConstants.ENTITYREGISTRY_PROVENANCE_ACTION;
import static eu.dnetlib.dhp.schema.common.ModelConstants.ORG_ORG_RELTYPE;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.dataInfo;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.field;
import static eu.dnetlib.dhp.schema.oaf.utils.OafMapperUtils.listKeyValues;
@ -39,7 +38,6 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.ror.model.ExternalIdType;
import eu.dnetlib.dhp.actionmanager.ror.model.Relationship;
import eu.dnetlib.dhp.actionmanager.ror.model.RorOrganization;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
@ -51,7 +49,6 @@ import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Oaf;
import eu.dnetlib.dhp.schema.oaf.Organization;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
import eu.dnetlib.dhp.schema.oaf.Relation;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import eu.dnetlib.dhp.utils.DHPUtils;
import scala.Tuple2;
@ -64,20 +61,16 @@ public class GenerateRorActionSetJob {
private static final String ROR_NS_PREFIX = "ror_________";
private static final List<KeyValue> ROR_COLLECTED_FROM = listKeyValues(
"10|openaire____::993a7ae7a863813cf95028b50708e222", "ROR");
private static final List<KeyValue> ROR_COLLECTED_FROM = listKeyValues("10|openaire____::993a7ae7a863813cf95028b50708e222", "ROR");
private static final DataInfo ROR_DATA_INFO = dataInfo(
false, "", false, false, ENTITYREGISTRY_PROVENANCE_ACTION, "0.92");
private static final DataInfo ROR_DATA_INFO = dataInfo(false, "", false, false, ENTITYREGISTRY_PROVENANCE_ACTION, "0.92");
private static final Qualifier ROR_PID_TYPE = qualifier(
"ROR", "ROR", ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES);
private static final Qualifier ROR_PID_TYPE = qualifier("ROR", "ROR", ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES);
public static void main(final String[] args) throws Exception {
final String jsonConfiguration = IOUtils
.toString(
GenerateRorActionSetJob.class
.toString(GenerateRorActionSetJob.class
.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/ror/action_set_parameters.json"));
final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
@ -116,8 +109,7 @@ public class GenerateRorActionSetJob {
readInputPath(spark, inputPath)
.map(GenerateRorActionSetJob::convertRorOrg)
.flatMap(List::iterator)
.mapToPair(
aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
.mapToPair(aa -> new Tuple2<>(new Text(aa.getClazz().getCanonicalName()),
new Text(OBJECT_MAPPER.writeValueAsString(aa))))
.saveAsHadoopFile(outputPath, Text.class, Text.class, SequenceFileOutputFormat.class);
}
@ -153,12 +145,9 @@ public class GenerateRorActionSetJob {
o.setEcnutscode(null);
if (r.getCountry() != null) {
o
.setCountry(
qualifier(
r.getCountry().getCountryCode(), r
.setCountry(qualifier(r.getCountry().getCountryCode(), r
.getCountry()
.getCountryName(),
ModelConstants.DNET_COUNTRY_TYPE, ModelConstants.DNET_COUNTRY_TYPE));
.getCountryName(), ModelConstants.DNET_COUNTRY_TYPE, ModelConstants.DNET_COUNTRY_TYPE));
} else {
o.setCountry(null);
}
@ -168,38 +157,10 @@ public class GenerateRorActionSetJob {
final List<AtomicAction<? extends Oaf>> res = new ArrayList<>();
res.add(new AtomicAction<>(Organization.class, o));
for (final Relationship rorRel : r.getRelationships()) {
if (rorRel.getType().equalsIgnoreCase("parent")) {
final String orgId1 = calculateOpenaireId(r.getId());
final String orgId2 = calculateOpenaireId(rorRel.getId());
res
.add(
new AtomicAction<>(Relation.class,
calculateHierarchyRel(orgId1, orgId2, ModelConstants.IS_PARENT_OF)));
res
.add(
new AtomicAction<>(Relation.class,
calculateHierarchyRel(orgId2, orgId1, ModelConstants.IS_CHILD_OF)));
}
}
return res;
}
private static Relation calculateHierarchyRel(final String source, final String target, final String relClass) {
final Relation rel = new Relation();
rel.setSource(source);
rel.setTarget(target);
rel.setRelType(ORG_ORG_RELTYPE);
rel.setSubRelType(ModelConstants.RELATIONSHIP);
rel.setRelClass(relClass);
rel.setCollectedfrom(ROR_COLLECTED_FROM);
rel.setDataInfo(ROR_DATA_INFO);
rel.setLastupdatetimestamp(System.currentTimeMillis());
return rel;
}
private static String calculateOpenaireId(final String rorId) {
return String.format("20|%s::%s", ROR_NS_PREFIX, DHPUtils.md5(rorId));
}
@ -212,8 +173,7 @@ public class GenerateRorActionSetJob {
final String type = e.getKey();
final List<String> all = e.getValue().getAll();
if (all != null) {
final Qualifier qualifier = qualifier(
type, type, ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES);
final Qualifier qualifier = qualifier(type, type, ModelConstants.DNET_PID_TYPES, ModelConstants.DNET_PID_TYPES);
for (final String pid : all) {
pids
.add(structuredProperty(pid, qualifier, ROR_DATA_INFO));