From ea9b00ce56bdc78db6e5b46af9b6bbebf74ad138 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 20 May 2021 15:31:42 +0200
Subject: [PATCH 001/106] adjusted test

---
 .../dnetlib/dhp/actionmanager/project/utils/EXCELParser.java | 2 +-
 .../dnetlib/dhp/actionmanager/project/EXCELParserTest.java   | 5 +++--
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java
index cc18c6f54c..1a6ebb9e86 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/utils/EXCELParser.java
@@ -32,7 +32,7 @@ public class EXCELParser {
 
 		XSSFSheet sheet = wb.getSheet(sheetName);
 
-		if(sheetName == null){
+		if (sheetName == null) {
 			throw new RuntimeException("Sheet name " + sheetName + " not present in current file");
 		}
 
diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java
index 59b536cd54..72ba48f418 100644
--- a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java
+++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/project/EXCELParserTest.java
@@ -35,8 +35,9 @@ public class EXCELParserTest {
 
 		EXCELParser excelParser = new EXCELParser();
 
-		List<Object> pl = excelParser
-			.parse(httpConnector.getInputSourceAsStream(URL), "eu.dnetlib.dhp.actionmanager.project.utils.ExcelTopic");
+		final String classForName = "eu.dnetlib.dhp.actionmanager.project.utils.ExcelTopic";
+		final String sheetName = "Topics";
+		List<Object> pl = excelParser.parse(httpConnector.getInputSourceAsStream(URL), classForName, sheetName);
 
 		Assertions.assertEquals(3837, pl.size());
 

From 4d6c473bf18a42a1e0fac7863eddae017d1a7eff Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Thu, 20 May 2021 18:26:42 +0200
Subject: [PATCH 002/106] removed redundant classes contained now in dhp-schema

---
 .../dhp/schema/orcid/AuthorHistory.java       |  79 -------------
 .../dhp/schema/orcid/AuthorSummary.java       |  25 ----
 .../dnetlib/dhp/schema/orcid/Contributor.java |  58 ----------
 .../dnetlib/dhp/schema/orcid/ExternalId.java  |  38 ------
 .../dnetlib/dhp/schema/orcid/OrcidData.java   |  34 ------
 .../dhp/schema/orcid/PublicationDate.java     |  38 ------
 .../eu/dnetlib/dhp/schema/orcid/Work.java     |  16 ---
 .../dnetlib/dhp/schema/orcid/WorkDetail.java  | 109 ------------------
 8 files changed, 397 deletions(-)
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorHistory.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorSummary.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Contributor.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/ExternalId.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/OrcidData.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/PublicationDate.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Work.java
 delete mode 100644 dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/WorkDetail.java

diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorHistory.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorHistory.java
deleted file mode 100644
index 554aae82cf..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorHistory.java
+++ /dev/null
@@ -1,79 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-public class AuthorHistory implements Serializable {
-	private String creationMethod;
-	private String completionDate;
-	private String submissionDate;
-	private String lastModifiedDate;
-	private boolean claimed;
-	private String deactivationDate;
-	private boolean verifiedEmail;
-	private boolean verifiedPrimaryEmail;
-
-	public String getCreationMethod() {
-		return creationMethod;
-	}
-
-	public void setCreationMethod(String creationMethod) {
-		this.creationMethod = creationMethod;
-	}
-
-	public String getCompletionDate() {
-		return completionDate;
-	}
-
-	public void setCompletionDate(String completionDate) {
-		this.completionDate = completionDate;
-	}
-
-	public String getSubmissionDate() {
-		return submissionDate;
-	}
-
-	public void setSubmissionDate(String submissionDate) {
-		this.submissionDate = submissionDate;
-	}
-
-	public String getLastModifiedDate() {
-		return lastModifiedDate;
-	}
-
-	public void setLastModifiedDate(String lastModifiedDate) {
-		this.lastModifiedDate = lastModifiedDate;
-	}
-
-	public boolean isClaimed() {
-		return claimed;
-	}
-
-	public void setClaimed(boolean claimed) {
-		this.claimed = claimed;
-	}
-
-	public String getDeactivationDate() {
-		return deactivationDate;
-	}
-
-	public void setDeactivationDate(String deactivationDate) {
-		this.deactivationDate = deactivationDate;
-	}
-
-	public boolean isVerifiedEmail() {
-		return verifiedEmail;
-	}
-
-	public void setVerifiedEmail(boolean verifiedEmail) {
-		this.verifiedEmail = verifiedEmail;
-	}
-
-	public boolean isVerifiedPrimaryEmail() {
-		return verifiedPrimaryEmail;
-	}
-
-	public void setVerifiedPrimaryEmail(boolean verifiedPrimaryEmail) {
-		this.verifiedPrimaryEmail = verifiedPrimaryEmail;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorSummary.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorSummary.java
deleted file mode 100644
index 813aead490..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/AuthorSummary.java
+++ /dev/null
@@ -1,25 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-public class AuthorSummary extends OrcidData implements Serializable {
-	AuthorData authorData;
-	AuthorHistory authorHistory;
-
-	public AuthorData getAuthorData() {
-		return authorData;
-	}
-
-	public void setAuthorData(AuthorData authorData) {
-		this.authorData = authorData;
-	}
-
-	public AuthorHistory getAuthorHistory() {
-		return authorHistory;
-	}
-
-	public void setAuthorHistory(AuthorHistory authorHistory) {
-		this.authorHistory = authorHistory;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Contributor.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Contributor.java
deleted file mode 100644
index 3b543db4b0..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Contributor.java
+++ /dev/null
@@ -1,58 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-import eu.dnetlib.dhp.schema.orcid.AuthorData;
-
-/**
- * This class models the data related to a contributor, that are retrieved from an orcid publication
- */
-
-public class Contributor extends AuthorData implements Serializable {
-	private String sequence;
-	private String role;
-	private transient boolean simpleMatch;
-	private transient Double score;
-	private transient boolean bestMatch;
-
-	public String getSequence() {
-		return sequence;
-	}
-
-	public void setSequence(String sequence) {
-		this.sequence = sequence;
-	}
-
-	public String getRole() {
-		return role;
-	}
-
-	public void setRole(String role) {
-		this.role = role;
-	}
-
-	public boolean isSimpleMatch() {
-		return simpleMatch;
-	}
-
-	public void setSimpleMatch(boolean simpleMatch) {
-		this.simpleMatch = simpleMatch;
-	}
-
-	public Double getScore() {
-		return score;
-	}
-
-	public void setScore(Double score) {
-		this.score = score;
-	}
-
-	public boolean isBestMatch() {
-		return bestMatch;
-	}
-
-	public void setBestMatch(boolean bestMatch) {
-		this.bestMatch = bestMatch;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/ExternalId.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/ExternalId.java
deleted file mode 100644
index d8f001aa5a..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/ExternalId.java
+++ /dev/null
@@ -1,38 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-/**
- * This class models the data related to external id, that are retrieved from an orcid publication
- */
-
-public class ExternalId implements Serializable {
-	private String type;
-	private String value;
-	private String relationShip;
-
-	public String getType() {
-		return type;
-	}
-
-	public void setType(String type) {
-		this.type = type;
-	}
-
-	public String getValue() {
-		return value;
-	}
-
-	public void setValue(String value) {
-		this.value = value;
-	}
-
-	public String getRelationShip() {
-		return relationShip;
-	}
-
-	public void setRelationShip(String relationShip) {
-		this.relationShip = relationShip;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/OrcidData.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/OrcidData.java
deleted file mode 100644
index 606eea6a8e..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/OrcidData.java
+++ /dev/null
@@ -1,34 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-public class OrcidData implements Serializable {
-	protected String base64CompressData;
-	protected String statusCode;
-	protected String downloadDate;
-
-	public String getBase64CompressData() {
-		return base64CompressData;
-	}
-
-	public void setBase64CompressData(String base64CompressData) {
-		this.base64CompressData = base64CompressData;
-	}
-
-	public String getStatusCode() {
-		return statusCode;
-	}
-
-	public void setStatusCode(String statusCode) {
-		this.statusCode = statusCode;
-	}
-
-	public String getDownloadDate() {
-		return downloadDate;
-	}
-
-	public void setDownloadDate(String downloadDate) {
-		this.downloadDate = downloadDate;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/PublicationDate.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/PublicationDate.java
deleted file mode 100644
index 01972ce95a..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/PublicationDate.java
+++ /dev/null
@@ -1,38 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-/**
- * This class models the data related to a publication date, that are retrieved from an orcid publication
- */
-
-public class PublicationDate implements Serializable {
-	private String year;
-	private String month;
-	private String day;
-
-	public String getYear() {
-		return year;
-	}
-
-	public void setYear(String year) {
-		this.year = year;
-	}
-
-	public String getMonth() {
-		return month;
-	}
-
-	public void setMonth(String month) {
-		this.month = month;
-	}
-
-	public String getDay() {
-		return day;
-	}
-
-	public void setDay(String day) {
-		this.day = day;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Work.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Work.java
deleted file mode 100644
index c557eb5d2f..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/Work.java
+++ /dev/null
@@ -1,16 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-
-public class Work extends OrcidData implements Serializable {
-	WorkDetail workDetail;
-
-	public WorkDetail getWorkDetail() {
-		return workDetail;
-	}
-
-	public void setWorkDetail(WorkDetail workDetail) {
-		this.workDetail = workDetail;
-	}
-}
diff --git a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/WorkDetail.java b/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/WorkDetail.java
deleted file mode 100644
index 614d415c15..0000000000
--- a/dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/orcid/WorkDetail.java
+++ /dev/null
@@ -1,109 +0,0 @@
-
-package eu.dnetlib.dhp.schema.orcid;
-
-import java.io.Serializable;
-import java.util.List;
-
-import eu.dnetlib.dhp.schema.orcid.Contributor;
-import eu.dnetlib.dhp.schema.orcid.ExternalId;
-import eu.dnetlib.dhp.schema.orcid.OrcidData;
-import eu.dnetlib.dhp.schema.orcid.PublicationDate;
-
-/**
- * This class models the data that are retrieved from orcid publication
- */
-
-public class WorkDetail implements Serializable {
-
-	private String oid;
-	private String id;
-	private String sourceName;
-	private String type;
-	private List<String> titles;
-	private List<String> urls;
-	List<ExternalId> extIds;
-	List<PublicationDate> publicationDates;
-	List<Contributor> contributors;
-
-	public String getOid() {
-		return oid;
-	}
-
-	public void setOid(String oid) {
-		this.oid = oid;
-	}
-
-	public String getErrorCode() {
-		return errorCode;
-	}
-
-	public void setErrorCode(String errorCode) {
-		this.errorCode = errorCode;
-	}
-
-	private String errorCode;
-
-	public String getId() {
-		return id;
-	}
-
-	public void setId(String id) {
-		this.id = id;
-	}
-
-	public List<String> getTitles() {
-		return titles;
-	}
-
-	public void setTitles(List<String> titles) {
-		this.titles = titles;
-	}
-
-	public String getSourceName() {
-		return sourceName;
-	}
-
-	public void setSourceName(String sourceName) {
-		this.sourceName = sourceName;
-	}
-
-	public String getType() {
-		return type;
-	}
-
-	public void setType(String type) {
-		this.type = type;
-	}
-
-	public List<String> getUrls() {
-		return urls;
-	}
-
-	public void setUrls(List<String> urls) {
-		this.urls = urls;
-	}
-
-	public List<ExternalId> getExtIds() {
-		return extIds;
-	}
-
-	public void setExtIds(List<ExternalId> extIds) {
-		this.extIds = extIds;
-	}
-
-	public List<PublicationDate> getPublicationDates() {
-		return publicationDates;
-	}
-
-	public void setPublicationDates(List<PublicationDate> publicationDates) {
-		this.publicationDates = publicationDates;
-	}
-
-	public List<Contributor> getContributors() {
-		return contributors;
-	}
-
-	public void setContributors(List<Contributor> contributors) {
-		this.contributors = contributors;
-	}
-}

From ae7bd24d79ccd30d978f080da3b623f5090a8d5a Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Thu, 20 May 2021 18:32:22 +0200
Subject: [PATCH 003/106] removed old workflows

---
 .../oozie_app/config-default.xml              |  31 -
 .../orcid_activities/oozie_app/workflow.xml   | 542 ------------------
 .../oozie_app/config-default.xml              |  22 -
 .../oozie_app/workflow.xml                    | 505 ----------------
 .../oozie_app/workflow.xml                    |  99 ----
 .../oozie_app/workflow.xml                    | 232 --------
 .../oozie_app/config-default.xml              |  26 -
 .../oozie_app/workflow.xml                    |  40 --
 .../oozie_app/config-default.xml              |  26 -
 .../orcid_summaries/oozie_app/workflow.xml    |  68 ---
 10 files changed, 1591 deletions(-)
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_doi_author_list/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_activities/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/config-default.xml
deleted file mode 100644
index 05fe6d014f..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/config-default.xml
+++ /dev/null
@@ -1,31 +0,0 @@
-<configuration>
-    <property>
-        <name>oozie.action.sharelib.for.java</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.map.java.opts</name>
-        <value>-Xmx2g</value>
-    </property>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/workflow.xml
deleted file mode 100644
index ea4d33296c..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_activities/oozie_app/workflow.xml
+++ /dev/null
@@ -1,542 +0,0 @@
-<workflow-app name="Gen Orcid Works-no-doi From Activities" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>shell_cmd_0</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_0.tar.gz https://orcid.figshare.com/ndownloader/files/25002232 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_0.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_0.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_0.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 0</description>
-        </property>
-        <property>
-            <name>shell_cmd_1</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_1.tar.gz https://orcid.figshare.com/ndownloader/files/25002088 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_1.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_1.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_1.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 1</description>
-        </property>
-        <property>
-            <name>shell_cmd_2</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_2.tar.gz https://orcid.figshare.com/ndownloader/files/25000596 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_2.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_2.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_2.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 2</description>
-        </property>
-        <property>
-            <name>shell_cmd_3</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_3.tar.gz https://orcid.figshare.com/ndownloader/files/25015150 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_3.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_3.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_3.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 3</description>
-        </property>
-        <property>
-            <name>shell_cmd_4</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_4.tar.gz https://orcid.figshare.com/ndownloader/files/25033643 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_4.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_4.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_4.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 4</description>
-        </property>
-        <property>
-            <name>shell_cmd_5</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_5.tar.gz https://orcid.figshare.com/ndownloader/files/25005483 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_5.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_5.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_5.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 5</description>
-        </property>
-        <property>
-            <name>shell_cmd_6</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_6.tar.gz https://orcid.figshare.com/ndownloader/files/25005425 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_6.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_6.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_6.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 6</description>
-        </property>
-        <property>
-            <name>shell_cmd_7</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_7.tar.gz https://orcid.figshare.com/ndownloader/files/25012016 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_7.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_7.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_7.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 7</description>
-        </property>
-        <property>
-            <name>shell_cmd_8</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_8.tar.gz https://orcid.figshare.com/ndownloader/files/25012079 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_8.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_8.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_8.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 8</description>
-        </property>
-        <property>
-            <name>shell_cmd_9</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_9.tar.gz https://orcid.figshare.com/ndownloader/files/25010727 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_9.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_9.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_9.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 9</description>
-        </property>
-        <property>
-            <name>shell_cmd_X</name>
-            <value>wget -O /tmp/ORCID_2020_10_activites_X.tar.gz https://orcid.figshare.com/ndownloader/files/25011025 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_activites_X.tar.gz /data/orcid_activities_2020/ORCID_2020_10_activites_X.tar.gz ; rm -f /tmp/ORCID_2020_10_activites_X.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file X</description>
-        </property>
-    </parameters>
-
-    <start to="ResetWorkingPath"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-    
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath}/no_doi_works/*'/>
-        </fs>
-        <ok to="fork_check_download_files"/>
-        <error to="Kill"/>
-    </action>
-    
-    <fork name = "fork_check_download_files">
-      <path start = "check_exist_on_hdfs_activities_0"/>
-      <path start = "check_exist_on_hdfs_activities_1"/>
-      <path start = "check_exist_on_hdfs_activities_2"/>
-	  <path start = "check_exist_on_hdfs_activities_3"/>
-	  <path start = "check_exist_on_hdfs_activities_4"/>
-	  <path start = "check_exist_on_hdfs_activities_5"/>
-	  <path start = "check_exist_on_hdfs_activities_6"/>
-	  <path start = "check_exist_on_hdfs_activities_7"/>
-	  <path start = "check_exist_on_hdfs_activities_8"/>
-	  <path start = "check_exist_on_hdfs_activities_9"/>
-	  <path start = "check_exist_on_hdfs_activities_X"/>
-   	</fork>
-   	
-    <decision name="check_exist_on_hdfs_activities_0">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_0.tar.gz'))}
-            </case>
-            <default to="Download_0" />
-         </switch>
-	</decision>
-	
-    <action name="Download_0">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_0}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_0">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_0.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_0.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_1">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_1.tar.gz'))}
-            </case>
-            <default to="Download_1" />
-         </switch>
-	</decision>
-	
-    <action name="Download_1">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_1}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_1">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_1.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_1.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_2">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_2.tar.gz'))}
-            </case>
-            <default to="Download_2" />
-         </switch>
-	</decision>
-	
-    <action name="Download_2">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_2}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_2">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_2.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_2.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_3">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_3.tar.gz'))}
-            </case>
-            <default to="Download_3" />
-         </switch>
-	</decision>
-	
-    <action name="Download_3">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_3}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_3">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_3.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_3.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_4">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_4.tar.gz'))}
-            </case>
-            <default to="Download_4" />
-         </switch>
-	</decision>
-	
-    <action name="Download_4">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_4}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_4">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_4.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_4.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_5">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_5.tar.gz'))}
-            </case>
-            <default to="Download_5" />
-         </switch>
-	</decision>
-	
-    <action name="Download_5">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_5}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_5">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_5.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_5.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_6">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_6.tar.gz'))}
-            </case>
-            <default to="Download_6" />
-         </switch>
-	</decision>
-	
-    <action name="Download_6">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_6}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_6">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_6.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_6.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    
-    <decision name="check_exist_on_hdfs_activities_7">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_7.tar.gz'))}
-            </case>
-            <default to="Download_7" />
-         </switch>
-	</decision>
-	
-    <action name="Download_7">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_7}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_7">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_7.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_7.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_8">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_8.tar.gz'))}
-            </case>
-            <default to="Download_8" />
-         </switch>
-	</decision>
-	
-    <action name="Download_8">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_8}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_8">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_8.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_8.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_9">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_9.tar.gz'))}
-            </case>
-            <default to="Download_9" />
-         </switch>
-	</decision>
-	
-    <action name="Download_9">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_9}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_9">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_9.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_9.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_X">
-         <switch>
-            <case to="wait_download_phase_node">
-              ${fs:exists(concat(workingPath,'/ORCID_2020_10_activites_X.tar.gz'))}
-            </case>
-            <default to="Download_X" />
-         </switch>
-	</decision>
-	
-    <action name="Download_X">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_X}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="wait_download_phase_node"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="GenOrcidAuthorWork_X">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcidnodoi.GenOrcidAuthorWork</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_X.tar.gz</arg>
-            <arg>-ow</arg><arg>no_doi_works/works_X.seq</arg>
-            <arg>-oew</arg><arg>no_doi_enriched_works/</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <join name = "wait_download_phase_node" to = "fork_gen_orcid_author_work"/>
-
-    <fork name = "fork_gen_orcid_author_work">
-        <path start = "GenOrcidAuthorWork_0"/>
-        <path start = "GenOrcidAuthorWork_1"/>
-        <path start = "GenOrcidAuthorWork_2"/>
-        <path start = "GenOrcidAuthorWork_3"/>
-        <path start = "GenOrcidAuthorWork_4"/>
-        <path start = "GenOrcidAuthorWork_5"/>
-        <path start = "GenOrcidAuthorWork_6"/>
-        <path start = "GenOrcidAuthorWork_7"/>
-        <path start = "GenOrcidAuthorWork_8"/>
-        <path start = "GenOrcidAuthorWork_9"/>
-        <path start = "GenOrcidAuthorWork_X"/>
-    </fork>
-
-    <join name = "join_node" to = "End"/>
-
-<!--    <join name = "join_node" to = "fork_gen_orcid_author_work_2"/>-->
-
-<!--    <fork name = "fork_gen_orcid_author_work_2">-->
-<!--        <path start = "GenOrcidAuthorWork_6"/>-->
-<!--        <path start = "GenOrcidAuthorWork_7"/>-->
-<!--        <path start = "GenOrcidAuthorWork_8"/>-->
-<!--        <path start = "GenOrcidAuthorWork_9"/>-->
-<!--        <path start = "GenOrcidAuthorWork_X"/>-->
-<!--    </fork>-->
-
-<!--    <join name = "join_node_2" to = "End"/>-->
-
-   <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/config-default.xml
deleted file mode 100644
index 5621415d97..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/config-default.xml
+++ /dev/null
@@ -1,22 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.java</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-    <property>
-      <name>oozie.launcher.mapreduce.map.java.opts</name>
-      <value>-Xmx4g</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/workflow.xml
deleted file mode 100644
index 1c2ae89ddc..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_authors_dois_data/oozie_app/workflow.xml
+++ /dev/null
@@ -1,505 +0,0 @@
-<workflow-app name="Gen Orcid Authors DOIs" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath_activities</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>shell_cmd_0</name>
-            <value>wget -O /tmp/ORCID_2019_activites_0.tar.gz https://orcid.figshare.com/ndownloader/files/18017660 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_0.tar.gz /data/orcid_activities/ORCID_2019_activites_0.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 0</description>
-        </property>
-        <property>
-            <name>shell_cmd_1</name>
-            <value>wget -O /tmp/ORCID_2019_activites_1.tar.gz https://orcid.figshare.com/ndownloader/files/18017675 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_1.tar.gz /data/orcid_activities/ORCID_2019_activites_1.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 1</description>
-        </property>
-        <property>
-            <name>shell_cmd_2</name>
-            <value>wget -O /tmp/ORCID_2019_activites_2.tar.gz https://orcid.figshare.com/ndownloader/files/18017717 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_2.tar.gz /data/orcid_activities/ORCID_2019_activites_2.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 2</description>
-        </property>
-        <property>
-            <name>shell_cmd_3</name>
-            <value>wget -O /tmp/ORCID_2019_activites_3.tar.gz https://orcid.figshare.com/ndownloader/files/18017765 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_3.tar.gz /data/orcid_activities/ORCID_2019_activites_3.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 3</description>
-        </property> 
-        <property>
-            <name>shell_cmd_4</name>
-            <value>wget -O /tmp/ORCID_2019_activites_4.tar.gz https://orcid.figshare.com/ndownloader/files/18017831 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_4.tar.gz /data/orcid_activities/ORCID_2019_activites_4.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 4</description>
-        </property> 
-        <property>
-            <name>shell_cmd_5</name>
-            <value>wget -O /tmp/ORCID_2019_activites_5.tar.gz https://orcid.figshare.com/ndownloader/files/18017987 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_5.tar.gz /data/orcid_activities/ORCID_2019_activites_5.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 5</description>
-        </property>  
-        <property>
-            <name>shell_cmd_6</name>
-            <value>wget -O /tmp/ORCID_2019_activites_6.tar.gz https://orcid.figshare.com/ndownloader/files/18018053 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_6.tar.gz /data/orcid_activities/ORCID_2019_activites_6.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 6</description>
-        </property>
-        <property>
-            <name>shell_cmd_7</name>
-            <value>wget -O /tmp/ORCID_2019_activites_7.tar.gz https://orcid.figshare.com/ndownloader/files/18018023 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_7.tar.gz /data/orcid_activities/ORCID_2019_activites_7.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 7</description>
-        </property>
-        <property>
-            <name>shell_cmd_8</name>
-            <value>wget -O /tmp/ORCID_2019_activites_8.tar.gz https://orcid.figshare.com/ndownloader/files/18018248 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_8.tar.gz /data/orcid_activities/ORCID_2019_activites_8.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 8</description>
-        </property>
-        <property>
-            <name>shell_cmd_9</name>
-            <value>wget -O /tmp/ORCID_2019_activites_9.tar.gz https://orcid.figshare.com/ndownloader/files/18018029 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_9.tar.gz /data/orcid_activities/ORCID_2019_activites_9.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file 9</description>
-        </property> 
-        <property>
-            <name>shell_cmd_X</name>
-            <value>wget -O /tmp/ORCID_2019_activites_X.tar.gz https://orcid.figshare.com/ndownloader/files/18018182 ; hdfs dfs -copyFromLocal /tmp/ORCID_2019_activites_X.tar.gz /data/orcid_activities/ORCID_2019_activites_X.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid activity file X</description>
-        </property>  
-    </parameters>
-    
-    <start to="ResetWorkingPath"/>
-    
-    
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-    
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath_activities}/output'/>
-            <mkdir path='${workingPath_activities}/output'/>
-        </fs>
-        <ok to="fork_gen_orcid_authors_dois"/>
-        <error to="Kill"/>
-    </action>
-    
-    <fork name = "fork_gen_orcid_authors_dois">
-      <path start = "check_exist_on_hdfs_activities_0"/>
-      <path start = "check_exist_on_hdfs_activities_1"/>
-      <path start = "check_exist_on_hdfs_activities_2"/>
-	  <path start = "check_exist_on_hdfs_activities_3"/>
-	  <path start = "check_exist_on_hdfs_activities_4"/>
-	  <path start = "check_exist_on_hdfs_activities_5"/>
-	  <path start = "check_exist_on_hdfs_activities_6"/>
-	  <path start = "check_exist_on_hdfs_activities_7"/>
-	  <path start = "check_exist_on_hdfs_activities_8"/>
-	  <path start = "check_exist_on_hdfs_activities_9"/>
-	  <path start = "check_exist_on_hdfs_activities_X"/>
-   	</fork>
-   	
-    <decision name="check_exist_on_hdfs_activities_0">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_0">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_0.tar.gz'))}
-            </case>
-            <default to="Download_0" />
-         </switch>
-	</decision>
-	
-    <action name="Download_0">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_0}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_0"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_0">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_0.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_0.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_1">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_1">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_1.tar.gz'))}
-            </case>
-            <default to="Download_1" />
-         </switch>
-	</decision>
-	
-    <action name="Download_1">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_1}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_1"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_1">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_1.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_1.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_2">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_2">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_2.tar.gz'))}
-            </case>
-            <default to="Download_2" />
-         </switch>
-	</decision>
-	
-    <action name="Download_2">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_2}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_2"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_2">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_2.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_2.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_3">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_3">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_3.tar.gz'))}
-            </case>
-            <default to="Download_3" />
-         </switch>
-	</decision>
-	
-    <action name="Download_3">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_3}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_3"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_3">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_3.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_3.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_4">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_4">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_4.tar.gz'))}
-            </case>
-            <default to="Download_4" />
-         </switch>
-	</decision>
-	
-    <action name="Download_4">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_4}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_4"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_4">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_4.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_4.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_5">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_5">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_5.tar.gz'))}
-            </case>
-            <default to="Download_5" />
-         </switch>
-	</decision>
-	
-    <action name="Download_5">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_5}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_5"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_5">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_5.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_5.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_6">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_6">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_6.tar.gz'))}
-            </case>
-            <default to="Download_6" />
-         </switch>
-	</decision>
-	
-    <action name="Download_6">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_6}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_6"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_6">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_6.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_6.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    
-    <decision name="check_exist_on_hdfs_activities_7">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_7">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_7.tar.gz'))}
-            </case>
-            <default to="Download_7" />
-         </switch>
-	</decision>
-	
-    <action name="Download_7">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_7}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_7"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_7">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_7.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_7.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_8">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_8">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_8.tar.gz'))}
-            </case>
-            <default to="Download_8" />
-         </switch>
-	</decision>
-	
-    <action name="Download_8">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_8}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_8"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_8">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_8.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_8.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_9">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_9">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_9.tar.gz'))}
-            </case>
-            <default to="Download_9" />
-         </switch>
-	</decision>
-	
-    <action name="Download_9">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_9}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_9"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_9">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_9.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_9.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <decision name="check_exist_on_hdfs_activities_X">
-         <switch>
-            <case to="Gen_Orcid_Authors_DOIs_X">
-              ${fs:exists(concat(workingPath_activities,'/ORCID_2019_activites_X.tar.gz'))}
-            </case>
-            <default to="Download_X" />
-         </switch>
-	</decision>
-	
-    <action name="Download_X">
-		<shell xmlns="uri:oozie:shell-action:0.1">
-		<job-tracker>${jobTracker}</job-tracker>
-		<name-node>${nameNode}</name-node>
-		<exec>bash</exec>
-	    <argument>-c</argument>
-	    <argument>${shell_cmd_X}</argument>
-		<capture-output/>
-		</shell>
-	<ok to="Gen_Orcid_Authors_DOIs_X"/>
-	<error to="Kill"/>
-	</action>
-	
-	<action name="Gen_Orcid_Authors_DOIs_X">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidAuthorsDOIsDataGen</main-class>
-            <arg>-d</arg><arg>${workingPath_activities}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2019_activites_X.tar.gz</arg>
-            <arg>-o</arg><arg>output/authors_dois_X.seq</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-    
-    <join name = "join_node" to = "End"/>
-    
-   <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_doi_author_list/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_doi_author_list/oozie_app/workflow.xml
deleted file mode 100644
index 133a6f4bd2..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_doi_author_list/oozie_app/workflow.xml
+++ /dev/null
@@ -1,99 +0,0 @@
-<workflow-app name="gen_doi_author_list" xmlns="uri:oozie:workflow:0.5">
-<parameters>
-    <property>
-        <name>sparkDriverMemory</name>
-        <description>memory for driver process</description>
-    </property>
-    <property>
-        <name>sparkExecutorMemory</name>
-        <description>memory for individual executor</description>
-    </property>
-    <property>
-        <name>sparkExecutorCores</name>
-        <description>number of cores used by single executor</description>
-    </property>
-    <property>
-        <name>spark2MaxExecutors</name>
-        <value>20</value>
-    </property>
-    <property>
-        <name>oozieActionShareLibForSpark2</name>
-        <description>oozie action sharelib for spark 2.*</description>
-    </property>
-    <property>
-        <name>spark2ExtraListeners</name>
-        <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
-        <description>spark 2.* extra listeners classname</description>
-    </property>
-    <property>
-        <name>spark2SqlQueryExecutionListeners</name>
-        <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
-        <description>spark 2.* sql query execution listeners classname</description>
-    </property>
-    <property>
-        <name>spark2YarnHistoryServerAddress</name>
-        <description>spark 2.* yarn history server address</description>
-    </property>
-    <property>
-        <name>spark2EventLogDir</name>
-        <description>spark 2.* event log dir location</description>
-    </property>
-    <property>
-        <name>workingPath</name>
-        <description>the working dir base path</description>
-    </property>
-</parameters>
-
-<global>
-    <job-tracker>${jobTracker}</job-tracker>
-    <name-node>${nameNode}</name-node>
-    <configuration>
-        <property>
-            <name>oozie.action.sharelib.for.spark</name>
-            <value>${oozieActionShareLibForSpark2}</value>
-        </property>
-    </configuration>
-</global>
-
-<start to="ResetWorkingPath"/>
-
-<kill name="Kill">
-    <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-</kill>
-
-<action name="ResetWorkingPath">
-    <fs>
-        <delete path='${workingPath}/doi_author_list'/>
-    </fs>
-    <ok to="GenDoiAuthorList"/>
-    <error to="Kill"/>
-</action>
-
-<action name="GenDoiAuthorList">
-    <spark xmlns="uri:oozie:spark-action:0.2">
-        <master>yarn-cluster</master>
-        <mode>cluster</mode>
-        <name>GenDoiAuthorList</name>
-        <class>eu.dnetlib.doiboost.orcid.SparkGenerateDoiAuthorList</class>
-        <jar>dhp-doiboost-${projectVersion}.jar</jar>
-        <spark-opts>
-            --executor-memory=${sparkExecutorMemory}
-            --driver-memory=${sparkDriverMemory}
-            --conf spark.extraListeners=${spark2ExtraListeners}
-            --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-            --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-            --conf spark.dynamicAllocation.enabled=true
-            --conf spark.dynamicAllocation.maxExecutors=${spark2MaxExecutors}
-        </spark-opts>
-        <arg>-w</arg><arg>${workingPath}/</arg>
-        <arg>-a</arg><arg>authors/authors.seq</arg>
-        <arg>-xw</arg><arg>xml/works/*.seq</arg>
-        <arg>-o</arg><arg>doi_author_list/</arg>
-    </spark>
-    <ok to="End"/>
-    <error to="Kill"/>
-</action>
-
-<end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_activities/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_activities/oozie_app/workflow.xml
deleted file mode 100644
index 6f629c7540..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_activities/oozie_app/workflow.xml
+++ /dev/null
@@ -1,232 +0,0 @@
-<workflow-app name="Extract Orcid XML Works From Activities" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-    </parameters>
-
-    <global>
-        <job-tracker>${jobTracker}</job-tracker>
-        <name-node>${nameNode}</name-node>
-        <configuration>
-            <property>
-                <name>oozie.action.sharelib.for.java</name>
-                <value>${oozieActionShareLibForSpark2}</value>
-            </property>
-            <property>
-                <name>oozie.launcher.mapreduce.user.classpath.first</name>
-                <value>true</value>
-            </property>
-            <property>
-                <name>oozie.launcher.mapreduce.map.java.opts</name>
-                <value>-Xmx2g</value>
-            </property>
-            <property>
-                <name>oozie.use.system.libpath</name>
-                <value>true</value>
-            </property>
-        </configuration>
-    </global>
-
-    <start to="ResetWorkingPath"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath}/xml/works'/>
-            <mkdir path='${workingPath}/xml/works'/>
-        </fs>
-        <ok to="fork_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <fork name = "fork_node">
-        <path start = "ExtractXMLWorkActivities_0"/>
-        <path start = "ExtractXMLWorkActivities_1"/>
-        <path start = "ExtractXMLWorkActivities_2"/>
-        <path start = "ExtractXMLWorkActivities_3"/>
-        <path start = "ExtractXMLWorkActivities_4"/>
-        <path start = "ExtractXMLWorkActivities_5"/>
-        <path start = "ExtractXMLWorkActivities_6"/>
-        <path start = "ExtractXMLWorkActivities_7"/>
-        <path start = "ExtractXMLWorkActivities_8"/>
-        <path start = "ExtractXMLWorkActivities_9"/>
-        <path start = "ExtractXMLWorkActivities_X"/>
-    </fork>
-    
-    <action name="ExtractXMLWorkActivities_0">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_0.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_0.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_1">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_1.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_1.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_2">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_2.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_2.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_3">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_3.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_3.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_4">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_4.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_4.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_5">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_5.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_5.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ExtractXMLWorkActivities_6">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_6.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_6.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_7">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_7.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_7.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ExtractXMLWorkActivities_8">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_8.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_8.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_9">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_9.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_9.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLWorkActivities_X">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLActivitiesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_activites_X.tar.gz</arg>
-            <arg>-ow</arg><arg>xml/works/xml_works_X.seq</arg>
-            <arg>-oew</arg><arg>---</arg>
-        </java>
-        <ok to="join_node"/>
-        <error to="Kill"/>
-    </action>
-
-    <join name = "join_node" to = "End"/>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/config-default.xml
deleted file mode 100644
index 191654378a..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/config-default.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.map.java.opts</name>
-        <value>-Xmx8g</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/workflow.xml
deleted file mode 100644
index 68d468ab33..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_extract_xml_summaries/oozie_app/workflow.xml
+++ /dev/null
@@ -1,40 +0,0 @@
-<workflow-app name="Extract Orcid XML Authors From Summaries" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-    </parameters>
-
-    <start to="ResetWorkingPath"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath}/xml/authors'/>
-            <mkdir path='${workingPath}/xml/authors'/>
-        </fs>
-        <ok to="ExtractXMLAuthorsSummaries"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ExtractXMLAuthorsSummaries">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.ExtractXMLSummariesData</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_summaries.tar.gz</arg>
-            <arg>-o</arg><arg>xml/authors/</arg>
-        </java>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/config-default.xml
deleted file mode 100644
index 191654378a..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/config-default.xml
+++ /dev/null
@@ -1,26 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.map.java.opts</name>
-        <value>-Xmx8g</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/workflow.xml
deleted file mode 100644
index 8517f35ee0..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_summaries/oozie_app/workflow.xml
+++ /dev/null
@@ -1,68 +0,0 @@
-<workflow-app name="Gen Orcid Authors From Summaries" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>shell_cmd_0</name>
-            <value>wget -O /tmp/ORCID_2020_10_summaries.tar.gz https://orcid.figshare.com/ndownloader/files/25032905 ; hdfs dfs -copyFromLocal /tmp/ORCID_2020_10_summaries.tar.gz /data/orcid_activities_2020/ORCID_2020_10_summaries.tar.gz ; rm -f /tmp/ORCID_2020_10_summaries.tar.gz
-            </value>
-            <description>the shell command that downloads and puts to hdfs orcid summaries</description>
-        </property>
-    </parameters>
-    
-    <start to="ResetWorkingPath"/>
-    
-    
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-    
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath}/authors'/>
-            <mkdir path='${workingPath}/authors'/>
-        </fs>
-        <ok to="check_exist_on_hdfs_summaries"/>
-        <error to="Kill"/>
-    </action>
-
-    <decision name="check_exist_on_hdfs_summaries">
-        <switch>
-            <case to="ImportOrcidSummaries">
-                ${fs:exists(concat(workingPath,'/ORCID_2020_10_summaries.tar.gz'))}
-            </case>
-            <default to="DownloadSummaries" />
-        </switch>
-    </decision>
-
-    <action name="DownloadSummaries">
-        <shell xmlns="uri:oozie:shell-action:0.1">
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <exec>bash</exec>
-            <argument>-c</argument>
-            <argument>${shell_cmd_0}</argument>
-            <capture-output/>
-        </shell>
-        <ok to="ImportOrcidSummaries"/>
-        <error to="Kill"/>
-    </action>
-    
-    <action name="ImportOrcidSummaries">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.orcid.OrcidDSManager</main-class>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-f</arg><arg>ORCID_2020_10_summaries.tar.gz</arg>
-            <arg>-o</arg><arg>authors/</arg>
-        </java>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file

From 1265dadc90686ad9a687a8bf7e20fd739d663ae9 Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Thu, 20 May 2021 19:01:28 +0200
Subject: [PATCH 004/106] workflow aligned with stable_ids

---
 .../orcid/SparkDownloadOrcidAuthors.java      |  2 +-
 .../orcidnodoi/oaf/PublicationToOaf.java      |  4 +-
 .../oozie_app/workflow.xml                    | 42 -------------------
 .../orcidnodoi/oozie_app/workflow.xml         | 31 ++++++++++----
 4 files changed, 27 insertions(+), 52 deletions(-)
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/import_orcid_no_doi/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkDownloadOrcidAuthors.java b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkDownloadOrcidAuthors.java
index 36b4b073db..8cf070213c 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkDownloadOrcidAuthors.java
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkDownloadOrcidAuthors.java
@@ -62,7 +62,7 @@ public class SparkDownloadOrcidAuthors {
 			isSparkSessionManaged,
 			spark -> {
 				String lastUpdate = HDFSUtil.readFromTextFile(hdfsServerUri, workingPath, "last_update.txt");
-				logger.info("lastUpdate: ", lastUpdate);
+				logger.info("lastUpdate: {}", lastUpdate);
 				if (StringUtils.isBlank(lastUpdate)) {
 					throw new RuntimeException("last update info not found");
 				}
diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java
index 5c32362223..ccae4d9768 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/oaf/PublicationToOaf.java
@@ -174,7 +174,9 @@ public class PublicationToOaf implements Serializable {
 					publication
 						.getExternalReference()
 						.add(
-							convertExtRef(extId, classid, classname, "dnet:pid_types", "dnet:pid_types"));
+							convertExtRef(
+								extId, classid, classname, ModelConstants.DNET_PID_TYPES,
+								ModelConstants.DNET_PID_TYPES));
 				}
 			});
 
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/import_orcid_no_doi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/import_orcid_no_doi/oozie_app/workflow.xml
deleted file mode 100644
index becdf0974e..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/import_orcid_no_doi/oozie_app/workflow.xml
+++ /dev/null
@@ -1,42 +0,0 @@
-<workflow-app name="import_orcid_no_doi" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>inputPath</name>
-            <value>/data/orcid_activities_2020/no_doi_dataset</value>
-            <description>path where retrieve the already generated action set</description>
-        </property>
-        <property>
-            <name>outputPath</name>
-            <value>/data/orcid_activities_2020/test_import_orcid_no_doi</value>
-            <description>path where to store the action set</description>
-        </property>
-    </parameters>
-
-    <global>
-        <job-tracker>${jobTracker}</job-tracker>
-        <name-node>${nameNode}</name-node>
-        <configuration>
-            <property>
-                <name>oozie.action.sharelib.for.spark</name>
-                <value>${oozieActionShareLibForSpark2}</value>
-            </property>
-        </configuration>
-    </global>
-
-    <start to="importOrcidNoDoi"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="importOrcidNoDoi">
-        <distcp xmlns="uri:oozie:distcp-action:0.2">
-            <arg>${inputPath}/*</arg>
-            <arg>${outputPath}</arg>
-        </distcp>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-   <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
index 6513ff7e1a..365c4d5b4f 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
@@ -1,5 +1,15 @@
 <workflow-app name="gen_orcid_no_doi_dataset" xmlns="uri:oozie:workflow:0.5">
     <parameters>
+        <property>
+            <name>workingPath</name>
+            <value>/data/orcid_activities_2020</value>
+            <description>path where the collection workflow stores the ORCID data</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>path where to store the action set</description>
+        </property>
+
         <property>
             <name>spark2GenNoDoiDatasetMaxExecutors</name>
             <value>40</value>
@@ -35,10 +45,6 @@
             <name>spark2EventLogDir</name>
             <description>spark 2.* event log dir location</description>
         </property>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
     </parameters>
 
     <global>
@@ -83,11 +89,20 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
                 --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
             </spark-opts>
-            <arg>-w</arg><arg>${workingPath}/</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-i</arg><arg>last_orcid_dataset</arg>
-            <arg>-oew</arg><arg>no_doi_dataset</arg>
+            <arg>--workingPath</arg><arg>${workingPath}/</arg>
+            <arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
+            <arg>--orcidDataFolder</arg><arg>last_orcid_dataset</arg>
+            <arg>--outputEnrichedWorksPath</arg><arg>no_doi_dataset</arg>
         </spark>
+        <ok to="importOrcidNoDoi"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="importOrcidNoDoi">
+        <distcp xmlns="uri:oozie:distcp-action:0.2">
+            <arg>${workingPath}/no_doi_dataset/*</arg>
+            <arg>${outputPath}</arg>
+        </distcp>
         <ok to="End"/>
         <error to="Kill"/>
     </action>

From d0945c3c7817d7081b6fb214b6ec7ee227e3a396 Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Thu, 20 May 2021 19:14:31 +0200
Subject: [PATCH 005/106] added temporary output folder, because of folder
 access rights are different on beta and prod

---
 .../dhp/doiboost/orcidnodoi/oozie_app/workflow.xml    | 11 +++++++----
 1 file changed, 7 insertions(+), 4 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
index 365c4d5b4f..68f370a20e 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
@@ -9,7 +9,10 @@
             <name>outputPath</name>
             <description>path where to store the action set</description>
         </property>
-
+        <property>
+            <name>processOutputFolder</name>
+            <description>temporary path where to store the action set</description>
+        </property>
         <property>
             <name>spark2GenNoDoiDatasetMaxExecutors</name>
             <value>40</value>
@@ -66,7 +69,7 @@
     
     <action name="ResetWorkingPath">
         <fs>
-            <delete path='${workingPath}/no_doi_dataset'/>
+            <delete path='${workingPath}/${processOutputFolder}'/>
         </fs>
         <ok to="GenOrcidNoDoiDataset"/>
         <error to="Kill"/>
@@ -92,7 +95,7 @@
             <arg>--workingPath</arg><arg>${workingPath}/</arg>
             <arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
             <arg>--orcidDataFolder</arg><arg>last_orcid_dataset</arg>
-            <arg>--outputEnrichedWorksPath</arg><arg>no_doi_dataset</arg>
+            <arg>--outputEnrichedWorksPath</arg><arg>${processOutputFolder}</arg>
         </spark>
         <ok to="importOrcidNoDoi"/>
         <error to="Kill"/>
@@ -100,7 +103,7 @@
 
     <action name="importOrcidNoDoi">
         <distcp xmlns="uri:oozie:distcp-action:0.2">
-            <arg>${workingPath}/no_doi_dataset/*</arg>
+            <arg>${workingPath}/${processOutputFolder}/*</arg>
             <arg>${outputPath}</arg>
         </distcp>
         <ok to="End"/>

From abdd0ade1fd154cbacedfea928788f600b3ba4a7 Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Fri, 21 May 2021 12:08:16 +0200
Subject: [PATCH 006/106] added temporary output folder as workflow parameter

---
 .../eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml   | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
index 68f370a20e..f7ac04821e 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
@@ -7,10 +7,12 @@
         </property>
         <property>
             <name>outputPath</name>
+            <value>/data/orcid_activities_2020/no_doi_dataset_prod/</value>
             <description>path where to store the action set</description>
         </property>
         <property>
             <name>processOutputFolder</name>
+            <value>process_no_doi_dataset_prod</value>
             <description>temporary path where to store the action set</description>
         </property>
         <property>

From 783988af06de0efd44ef7b5f0d5578bda7ed9ed9 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 11:17:25 +0200
Subject: [PATCH 007/106] depending on dhp-schemas:2.6.14 (release)

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 45e230c4fc..9396eeeb66 100644
--- a/pom.xml
+++ b/pom.xml
@@ -736,7 +736,7 @@
 		<mockito-core.version>3.3.3</mockito-core.version>
 		<mongodb.driver.version>3.4.2</mongodb.driver.version>
 		<vtd.version>[2.12,3.0)</vtd.version>
-		<dhp-schemas.version>[2.7.14]</dhp-schemas.version>
+		<dhp-schemas.version>[2.6.14]</dhp-schemas.version>
 		<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
 		<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
 		<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>

From 28a66af425a3128d6e3922831a49c954ccc729d6 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 11:52:24 +0200
Subject: [PATCH 008/106] updated URL in the issueManagement tag

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 9396eeeb66..19d00d6375 100644
--- a/pom.xml
+++ b/pom.xml
@@ -25,7 +25,7 @@
 
 	<issueManagement>
 		<system>Redmine</system>
-		<url>https://issue.openaire.research-infrastructures.eu/projects/openaire</url>
+		<url>https://support.openaire.eu/projects/openaire</url>
 	</issueManagement>
 
 	<ciManagement>

From e0061232e96b8f3b4d20781ba794484366438cb4 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 13:41:21 +0200
Subject: [PATCH 009/106] [aggregation] datacite wf: conditional creation of
 links, optional resume from intermediate phases

---
 .../datacite/oozie_app/workflow.xml            | 18 ++++++++++++++----
 1 file changed, 14 insertions(+), 4 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
index 036178b37b..3e0c2bba64 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
@@ -13,15 +13,26 @@
             <value>100</value>
             <description>The request block size</description>
         </property>
+        <property>
+            <name>exportLinks</name>
+            <value>false</value>
+            <description>instructs the transformation phase to produce the links or not</description>
+        </property>
 
     </parameters>
 
-    <start to="TransformJob"/>
+    <start to="resume_from"/>
 
     <kill name="Kill">
         <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
     </kill>
 
+    <decision name="resume_from">
+        <switch>
+            <case to="TransformDatacite">${wf:conf('resumeFrom') eq 'TransformDatacite'}</case>
+            <default to="ImportDatacite"/>
+        </switch>
+    </decision>
 
     <action name="ImportDatacite">
         <spark xmlns="uri:oozie:spark-action:0.2">
@@ -49,8 +60,7 @@
         <error to="Kill"/>
     </action>
 
-
-    <action name="TransformJob">
+    <action name="TransformDatacite">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn-cluster</master>
             <mode>cluster</mode>
@@ -70,7 +80,7 @@
             <arg>--sourcePath</arg><arg>${mainPath}/datacite_dump</arg>
             <arg>--targetPath</arg><arg>${mainPath}/datacite_oaf</arg>
             <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
-            <arg>--exportLinks</arg><arg>true</arg>
+            <arg>--exportLinks</arg><arg>${exportLinks}</arg>
             <arg>--master</arg><arg>yarn-cluster</arg>
         </spark>
         <ok to="End"/>

From f5486ffb1413031c28c22b9453c9b376a4aaff00 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:07:45 +0200
Subject: [PATCH 010/106] Fixed issues to tests

---
 .../eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala     | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
index 7628fb8535..d620c4ef3d 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
@@ -61,7 +61,7 @@ class MappingORCIDToOAFTest {
     assertTrue(oA == p.count())
     println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(p.first()))
 
-
+    spark.close()
   }
 
 
@@ -78,7 +78,7 @@ class MappingORCIDToOAFTest {
     val oaf = ORCIDToOAF.convertTOOAF(orcid)
     assert(oaf.getPid.size() == 1)
     oaf.getPid.toList.foreach(pid => assert(pid.getQualifier.getClassid.equals("doi")))
-    oaf.getPid.toList.foreach(pid => assert(pid.getValue.equals("10.1042/BCJ20160876".toLowerCase())))
+    oaf.getPid.toList.foreach(pid => assert(pid.getValue.equals("10.1042/BCJ20160876")))
     //println(mapper.writeValueAsString(ORCIDToOAF.convertTOOAF(orcid)))
 
 

From 2f66fedfec8f393bb5b9b299ae32459c13f856a2 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:22:23 +0200
Subject: [PATCH 011/106] changed the logic to verify if a community is
 contained in the list of context of a result

---
 .../dhp/oa/graph/dump/community/CommunitySplit.java   | 11 ++++-------
 1 file changed, 4 insertions(+), 7 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index 55f075e954..9e071a3565 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -57,16 +57,13 @@ public class CommunitySplit implements Serializable {
 		Dataset<CommunityResult> community_products = result
 			.filter((FilterFunction<CommunityResult>) r -> containsCommunity(r, c));
 
-		try {
-			community_products.first();
+
 			community_products
 				.write()
 				.option("compression", "gzip")
 				.mode(SaveMode.Overwrite)
 				.json(outputPath + "/" + c);
-		} catch (Exception e) {
 
-		}
 
 	}
 
@@ -75,9 +72,9 @@ public class CommunitySplit implements Serializable {
 			return r
 				.getContext()
 				.stream()
-				.filter(con -> con.getCode().equals(c))
-				.collect(Collectors.toList())
-				.size() > 0;
+					.map(con -> con.getCode())
+					.collect(Collectors.toList())
+					.contains(c)
 		}
 		return false;
 	}

From da88c850c61899e02278fa40b4a9a6fd7d5dacbb Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:22:44 +0200
Subject: [PATCH 012/106] changed the logic to verify if a community is
 contained in the list of context of a result

---
 .../eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index 9e071a3565..088ca1eaa8 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -74,7 +74,7 @@ public class CommunitySplit implements Serializable {
 				.stream()
 					.map(con -> con.getCode())
 					.collect(Collectors.toList())
-					.contains(c)
+					.contains(c);
 		}
 		return false;
 	}

From 86e50f7311f9b914a01c0bbd1eaee54b925225ad Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:31:45 +0200
Subject: [PATCH 013/106] modified code to split the Croatian funder

---
 .../funderresults/SparkDumpFunderResults.java | 31 ++++++++++++++++---
 1 file changed, 26 insertions(+), 5 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index 00f604b14b..261fb68bb1 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -8,6 +8,7 @@ import java.util.*;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.sql.*;
 import org.slf4j.Logger;
@@ -102,29 +103,49 @@ public class SparkDumpFunderResults implements Serializable {
 			} else {
 				funderdump = fundernsp.substring(0, fundernsp.indexOf("_")).toUpperCase();
 			}
-			writeFunderResult(funder, result, outputPath + "/" + funderdump);
+			writeFunderResult(funder, result, outputPath ,  funderdump);
 		});
 
 	}
 
-	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath) {
+	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath, String funderName, String funderDump) {
 
 		results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
 			if (!Optional.ofNullable(r.getProjects()).isPresent()) {
 				return null;
 			}
 			for (Project p : r.getProjects()) {
-				if (p.getId().startsWith(funder)) {
+				if (p.getId().startsWith(nsp)) {
+
+					if (nsp.equals("40|irb")) {
+						if (p.getFunder().getShortName().equals(funderName))
+							return r;
+						else
+							return null;
+					}
 					return r;
 				}
 			}
 			return null;
 		}, Encoders.bean(CommunityResult.class))
-			.filter(Objects::nonNull)
+			.filter((FilterFunction<CommunityResult>) r -> r!= null)
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
-			.json(outputPath);
+			.json(outputPath + "/" + funderDump);
 	}
 
+
+	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath,
+										  String funderDump) {
+
+		if (funder.equals("40|irb")) {
+			dumpResults(funder, results, outputPath, "CSF", "HRZZ");
+			dumpResults(funder, results, outputPath, "MSES", "MZOS");
+		} else
+			dumpResults(funder, results, outputPath, funderDump, null);
+
+	}
+
+
 }

From 69fd40fd308a7d9806c7ef801c57782ba91c0d8d Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:35:26 +0200
Subject: [PATCH 014/106] modified code to split the Croatian funder

---
 .../dump/funderresults/SparkDumpFunderResults.java | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index 261fb68bb1..b124b76ce0 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -108,7 +108,7 @@ public class SparkDumpFunderResults implements Serializable {
 
 	}
 
-	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath, String funderName, String funderDump) {
+	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath, String funderName) {
 
 		results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
 			if (!Optional.ofNullable(r.getProjects()).isPresent()) {
@@ -117,7 +117,7 @@ public class SparkDumpFunderResults implements Serializable {
 			for (Project p : r.getProjects()) {
 				if (p.getId().startsWith(nsp)) {
 
-					if (nsp.equals("40|irb")) {
+					if (nsp.startsWith("40|irb")) {
 						if (p.getFunder().getShortName().equals(funderName))
 							return r;
 						else
@@ -132,18 +132,18 @@ public class SparkDumpFunderResults implements Serializable {
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
-			.json(outputPath + "/" + funderDump);
+			.json(outputPath + "/" + funderName);
 	}
 
 
 	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath,
 										  String funderDump) {
 
-		if (funder.equals("40|irb")) {
-			dumpResults(funder, results, outputPath, "CSF", "HRZZ");
-			dumpResults(funder, results, outputPath, "MSES", "MZOS");
+		if (funder.startsWith("40|irb")) {
+			dumpResults(funder, results, outputPath,  "HRZZ");
+			dumpResults(funder, results, outputPath,  "MZOS");
 		} else
-			dumpResults(funder, results, outputPath, funderDump, null);
+			dumpResults(funder, results, outputPath,  funderDump);
 
 	}
 

From 87a6e2b967bd27a1e3a226b18e315b7a203a8bbc Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:38:28 +0200
Subject: [PATCH 015/106] extended test class

---
 .../dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java  | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
index 71bf5d9421..eefb0b9cbe 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
@@ -137,5 +137,11 @@ public class SplitPerFunderTest {
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 		Assertions.assertEquals(3, tmp.count());
 
+		// MZOS 1
+		tmp = sc
+				.textFile(workingDir.toString() + "/split/MZOS")
+				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+		Assertions.assertEquals(1, tmp.count());
+
 	}
 }

From 4b432fbee8293f57afa3bc75d4d7416315bafcc0 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:40:39 +0200
Subject: [PATCH 016/106] extended test class

---
 .../dhp/oa/graph/dump/funderresource/extendeddump/relation     | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/relation b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/relation
index 3ed91f4513..f886784376 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/relation
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/relation
@@ -5,4 +5,5 @@
 {"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::8b75543067b50076e70764917e188178","subRelType":"provision","target":"40|snsf________::50cb15ff7a6a3f8531f063770179e346"}
 {"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::9f3ff882f023209d9ffb4dc32b77d376","subRelType":"provision","target":"40|corda_______::ffc1811633b3222e4764c7b0517f83e8"}
 {"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::b566fa319c3923454e1e8eb886ab62d2","subRelType":"provision","target":"40|nhmrc_______::4e6c928fef9851b37ec73f4f6daca35b"}
-{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::e0554fb004a155bc23cfb43ee9fc8eae","subRelType":"provision","target":"40|corda__h2020::846b777af165fef7c904a81712a83b66"}
\ No newline at end of file
+{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::e0554fb004a155bc23cfb43ee9fc8eae","subRelType":"provision","target":"40|corda__h2020::846b777af165fef7c904a81712a83b66"}
+{"collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"lastupdatetimestamp":1603715146539,"properties":[],"relClass":"isProducedBy","relType":"datasourceOrganization","source":"10|doajarticles::2baa9032dc058d3c8ff780c426b0c19f","subRelType":"provision","target":"40|irb_hr______::1e5e62235d094afd01cd56e65112fc63"}
\ No newline at end of file

From 65a242646d8a45e533bee04d5f0db54be5dd49bb Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 14:45:25 +0200
Subject: [PATCH 017/106] added resource for APC dump

---
 .../oa/graph/dump/resultDump/publication_pca  | 25 +++++++++++++++++++
 1 file changed, 25 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca
new file mode 100644
index 0000000000..e15d845282
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca
@@ -0,0 +1,25 @@
+{"author":[],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - Subject","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":null}],"id":"dh-ch"}],"contributor":[],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2007-01-01"},"dateofcollection":"","dateoftransformation":"2020-05-25T16:14:18.452Z","description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Lit.opg., bijl."}],"embargoenddate":null,"externalReference":[],"extraInfo":[],"format":[],"fulltext":[],"id":"50|DansKnawCris::0224aae28af558f21768dbc6439c7a95","instance":[{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2007-01-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked 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+{"author":[],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - 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production"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"animal husbandry"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"“triple helix” model"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"modernization"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"value":"selection."}],"title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Кластеры как инструмент управления агробизнесом Кабардино-Балкарской Республики"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Clusters as instrument of management of agrobusiness of Kabardino-Balkar Republic"}],"journal":null}
+{"author":[{"affiliation":null,"fullname":"Schubart, A.","name":"A.","pid":[],"rank":1,"surname":"Schubart"}],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"dataInfo":null,"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"},{"dataInfo":null,"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"},{"dataInfo":null,"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},{"dataInfo":null,"key":"10|opendoar____::358aee4cc897452c00244351e4d91f69","value":"ZENODO"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - Subject","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":null}],"id":"dh-ch"}],"contributor":[],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"decisiontree-dedup-test","inferred":true,"invisible":false,"provenanceaction":{"classid":"sysimport:dedup","classname":"sysimport:dedup","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.8"},"dateofacceptance":{"dataInfo":null,"value":"1866-01-01"},"dateofcollection":"2019-02-17T01:33:44Z","dateoftransformation":null,"description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"n/a"}],"embargoenddate":null,"externalReference":[],"extraInfo":[],"format":[],"fulltext":[],"id":"50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8","instance":[{"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"},"dateofacceptance":{"dataInfo":null,"value":"1866-01-01"},"distributionlocation":null,"hostedby":{"dataInfo":null,"key":"10|issn___print::4a110be99bfeda7a5e85b5e4c7e95d87","value":"Philologus"},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://www.degruyter.com/view/j/phil.1866.24.issue-1-4/phil.1866.24.14.561/phil.1866.24.14.561.xml","http://www.degruyter.com/view/j/phil.1866.24.issue-1-4/phil.1866.24.14.561/phil.1866.24.14.561.pdf","http://dx.doi.org/10.1524/phil.1866.24.14.561"]},{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"},"dateofacceptance":null,"distributionlocation":null,"hostedby":{"dataInfo":null,"key":"10|issn___print::4a110be99bfeda7a5e85b5e4c7e95d87","value":"Philologus"},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":{"dataInfo":null,"value":"cc0"},"processingchargeamount":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":true,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2578.35"},"processingchargecurrency":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":true,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"EUR"},"refereed":null,"url":["https://zenodo.org/record/1634826/files/article.pdf"]},{"accessright":null,"collectedfrom":{"dataInfo":null,"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},"dateofacceptance":null,"distributionlocation":null,"hostedby":{"dataInfo":null,"key":"10|issn___print::4a110be99bfeda7a5e85b5e4c7e95d87","value":"Philologus"},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["http://www.degruyter.com/view/j/phil.1866.24.issue-1-4/phil.1866.24.14.561/phil.1866.24.14.561.xml","https://academic.microsoft.com/#/detail/2601803436"]},{"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|opendoar____::358aee4cc897452c00244351e4d91f69","value":"ZENODO"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"1866-01-01"},"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|opendoar____::358aee4cc897452c00244351e4d91f69","value":"ZENODO"},"instancetype":{"classid":"0038","classname":"Other literature type","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"license":null,"processingchargeamount":null,"processingchargecurrency":null,"refereed":null,"url":["https://zenodo.org/record/1634826"]}],"language":null,"lastupdatetimestamp":1591290751234,"oaiprovenance":null,"originalId":["10.1524/phil.1866.24.14.561","2601803436","od______2659::f9ba286bcf8429160b58072028052325"],"pid":[{"dataInfo":null,"qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"10.1524/phil.1866.24.14.561"}],"publisher":{"dataInfo":null,"value":"Walter de Gruyter GmbH"},"relevantdate":[{"dataInfo":null,"qualifier":{"classid":"created","classname":"created","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"value":"2017-03-26T10:09:50Z"},{"dataInfo":null,"qualifier":{"classid":"published-print","classname":"published-print","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"value":"1866-01-01"}],"resourcetype":{"classid":"Other","classname":"Other","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"source":[{"dataInfo":null,"value":"Crossref"},{"dataInfo":null,"value":null}],"subject":[{"dataInfo":null,"qualifier":{"classid":"keywords","classname":"keywords","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"Theology"},{"dataInfo":null,"qualifier":{"classid":"keywords","classname":"keywords","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"History"},{"dataInfo":null,"qualifier":{"classid":"keywords","classname":"keywords","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"Art history"}],"title":[{"dataInfo":null,"qualifier":{"classid":"alternative title","classname":"alternative title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"XIV. Die wörter άγαλμα, είχών, ξόανον, ανδρuις und verwandte, in ihren verschiedenen beziehungen. Nach Pausanias"},{"dataInfo":null,"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"xiv die worter άγαλμα eίχών ξόανον ανδρuις und verwandte in ihren verschiedenen beziehungen nach pausanias"}],"journal":{"conferencedate":null,"conferenceplace":null,"dataInfo":null,"edition":null,"ep":null,"iss":null,"issnLinking":null,"issnOnline":"2196-7008","issnPrinted":"0031-7985","name":"Philologus","sp":null,"vol":"24"}}
\ No newline at end of file

From 6410ab71d8bf6f936503ad760f0a00e040fae80f Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:13:58 +0200
Subject: [PATCH 018/106] added APC in the dump and test method

---
 .../dhp/oa/graph/dump/ResultMapper.java       |  8 +++
 .../dhp/oa/graph/dump/DumpJobTest.java        | 54 +++++++++++++++++++
 2 files changed, 62 insertions(+)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index d30b3122c0..1a4e7c42a9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -423,6 +423,14 @@ public class ResultMapper implements Serializable {
 			.ofNullable(i.getInstancetype())
 			.ifPresent(value -> instance.setType(value.getClassname()));
 		Optional.ofNullable(i.getUrl()).ifPresent(value -> instance.setUrl(value));
+		Optional<Field<String>> oPca = Optional.ofNullable(i.getProcessingchargeamount());
+		Optional<Field<String>> oPcc = Optional.ofNullable(i.getProcessingchargecurrency());
+		if (oPca.isPresent() && oPcc.isPresent()) {
+			APC apc = new APC();
+			apc.setCurrency(oPcc.get().getValue());
+			apc.setAmount(oPca.get().getValue());
+			instance.setArticleprocessingcharge(apc);
+		}
 
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index 7c69c9635f..f0842c8445 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -13,6 +13,7 @@ import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
 import org.apache.spark.api.java.function.ForeachFunction;
 import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.Row;
 import org.apache.spark.sql.SparkSession;
 import org.junit.jupiter.api.*;
 import org.slf4j.Logger;
@@ -408,4 +409,57 @@ public class DumpJobTest {
 
 	}
 
+	@Test
+	public void testArticlePCA() {
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(
+						// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<GraphResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+
+		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+
+		Assertions.assertEquals(23, verificationDataset.count());
+		//verificationDataset.show(false);
+
+		Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
+
+		verificationDataset.createOrReplaceTempView("check");
+
+		org.apache.spark.sql.Dataset<Row> temp = spark.sql("select id " +
+				"from check " +
+				"lateral view explode (instance) i as inst " +
+				"where inst.articleprocessingcharge is not null");
+
+		Assertions.assertTrue(temp.count() == 2);
+
+		Assertions.assertTrue(temp.filter("id = '50|datacite____::05c611fdfc93d7a2a703d1324e28104a'").count() == 1);
+
+		Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
+
+
+
+//		verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
+//				.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
+//				.count()
+
+//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
+	}
+
 }

From 13c66e16be2ce8503ffe48c002adee17637ab2e5 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:15:27 +0200
Subject: [PATCH 019/106] changed logic to split for communities

---
 .../graph/dump/community/CommunitySplit.java   | 18 ++++++++----------
 1 file changed, 8 insertions(+), 10 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index 088ca1eaa8..ec16a65e0d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -57,13 +57,11 @@ public class CommunitySplit implements Serializable {
 		Dataset<CommunityResult> community_products = result
 			.filter((FilterFunction<CommunityResult>) r -> containsCommunity(r, c));
 
-
-			community_products
-				.write()
-				.option("compression", "gzip")
-				.mode(SaveMode.Overwrite)
-				.json(outputPath + "/" + c);
-
+		community_products
+			.write()
+			.option("compression", "gzip")
+			.mode(SaveMode.Overwrite)
+			.json(outputPath + "/" + c);
 
 	}
 
@@ -72,9 +70,9 @@ public class CommunitySplit implements Serializable {
 			return r
 				.getContext()
 				.stream()
-					.map(con -> con.getCode())
-					.collect(Collectors.toList())
-					.contains(c);
+				.map(con -> con.getCode())
+				.collect(Collectors.toList())
+				.contains(c);
 		}
 		return false;
 	}

From 9a58f1b93ddc0b68415452772cf7f5f167fa0c46 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:20:39 +0200
Subject: [PATCH 020/106] added logic to select only the valid relations: those
 not deletedbyinference and having both part of the relation as entities in
 the graph

---
 .../SparkSelectValidRelationsJob.java         | 127 ++++++++++++++++++
 1 file changed, 127 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
new file mode 100644
index 0000000000..fdd545ff72
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
@@ -0,0 +1,127 @@
+package eu.dnetlib.dhp.oa.graph.dump.complete;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+import java.io.Serializable;
+import java.util.Optional;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.schema.oaf.*;
+
+public class SparkSelectValidRelationsJob implements Serializable {
+
+    private static final Logger log = LoggerFactory.getLogger(SparkSelectValidRelationsJob.class);
+
+    public static void main(String[] args) throws Exception {
+        String jsonConfiguration = IOUtils
+                .toString(
+                        SparkSelectValidRelationsJob.class
+                                .getResourceAsStream(
+                                        "/eu/dnetlib/dhp/oa/graph/dump/complete/input_relationdump_parameters.json"));
+
+        final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+        parser.parseArgument(args);
+
+        Boolean isSparkSessionManaged = Optional
+                .ofNullable(parser.get("isSparkSessionManaged"))
+                .map(Boolean::valueOf)
+                .orElse(Boolean.TRUE);
+        log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+        final String inputPath = parser.get("sourcePath");
+        log.info("inputPath: {}", inputPath);
+
+        final String outputPath = parser.get("outputPath");
+        log.info("outputPath: {}", outputPath);
+
+        SparkConf conf = new SparkConf();
+
+        runWithSparkSession(
+                conf,
+                isSparkSessionManaged,
+                spark -> {
+                    Utils.removeOutputDir(spark, outputPath);
+                    selectValidRelation(spark, inputPath, outputPath);
+
+                });
+
+    }
+
+    private static void selectValidRelation(SparkSession spark, String inputPath, String outputPath) {
+        Dataset<Relation> relation = Utils.readPath(spark, inputPath + "/relation", Relation.class);
+        Dataset<Publication> publication = Utils.readPath(spark, inputPath + "/publication", Publication.class);
+        Dataset<eu.dnetlib.dhp.schema.oaf.Dataset> dataset = Utils
+                .readPath(spark, inputPath + "/dataset", eu.dnetlib.dhp.schema.oaf.Dataset.class);
+        Dataset<Software> software = Utils.readPath(spark, inputPath + "/software", Software.class);
+        Dataset<OtherResearchProduct> other = Utils
+                .readPath(spark, inputPath + "/otherresearchproduct", OtherResearchProduct.class);
+        Dataset<Organization> organization = Utils.readPath(spark, inputPath + "/organization", Organization.class);
+        Dataset<Project> project = Utils.readPath(spark, inputPath + "/project", Project.class);
+        Dataset<Datasource> datasource = Utils.readPath(spark, inputPath + "/datasource", Datasource.class);
+
+        relation.createOrReplaceTempView("relation");
+        publication.createOrReplaceTempView("publication");
+        dataset.createOrReplaceTempView("dataset");
+        other.createOrReplaceTempView("other");
+        software.createOrReplaceTempView("software");
+        organization.createOrReplaceTempView("organization");
+        project.createOrReplaceTempView("project");
+        datasource.createOrReplaceTempView("datasource");
+
+        spark
+                .sql(
+                        "SELECT id " +
+                                "FROM publication " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM dataset " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM other " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM software " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM organization " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM project " +
+                                "UNION ALL " +
+                                "SELECT id " +
+                                "FROM datasource ")
+                .createOrReplaceTempView("identifiers");
+
+        spark
+                .sql(
+                        "SELECT relation.* " +
+                                "FROM relation " +
+                                "JOIN identifiers i1 " +
+                                "ON source = i1.id " +
+                                "JOIN identifiers i2 " +
+                                "ON target = i2.id " +
+                                "WHERE datainfo.deletedbyinference = false")
+                .as(Encoders.bean(Relation.class))
+                .write()
+                .option("compression", "gzip")
+                .mode(SaveMode.Overwrite)
+                .json(outputPath);
+        ;
+
+    }
+}
\ No newline at end of file

From 39b1a6edf6fae8c2be7d0f5a604e9f05135fba55 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:23:09 +0200
Subject: [PATCH 021/106] added test class for the selection of valid relations
 and description

---
 .../SparkSelectValidRelationsJob.java         |  8 ++
 .../dump/complete/SelectRelationTest.java     | 99 +++++++++++++++++++
 2 files changed, 107 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
index fdd545ff72..8b477b34d6 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
@@ -18,6 +18,14 @@ import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
 import eu.dnetlib.dhp.schema.oaf.*;
 
+/**
+ * It selects the valid relations among those present in the graph. One relation is valid if it is not deletedbyinference
+ * and if both the source and the target node are present in the graph and are not deleted by inference nor invisible.
+ * To check this I made a view of the ids of all the entities in the graph, and select the relations for which a join exists
+ * with this view for both the source and the target
+ */
+
+
 public class SparkSelectValidRelationsJob implements Serializable {
 
     private static final Logger log = LoggerFactory.getLogger(SparkSelectValidRelationsJob.class);
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java
new file mode 100644
index 0000000000..248bd72568
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java
@@ -0,0 +1,99 @@
+package eu.dnetlib.dhp.oa.graph.dump.complete;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.HashMap;
+
+import org.apache.commons.io.FileUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaRDD;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.ForeachFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.Row;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.Assertions;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import net.sf.saxon.expr.instruct.ForEach;
+
+public class SelectRelationTest {
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+    private static SparkSession spark;
+
+    private static Path workingDir;
+
+    private static final Logger log = LoggerFactory
+            .getLogger(SelectRelationTest.class);
+
+    private static HashMap<String, String> map = new HashMap<>();
+
+    @BeforeAll
+    public static void beforeAll() throws IOException {
+        workingDir = Files
+                .createTempDirectory(SelectRelationTest.class.getSimpleName());
+        log.info("using work dir {}", workingDir);
+
+        SparkConf conf = new SparkConf();
+        conf.setAppName(SelectRelationTest.class.getSimpleName());
+
+        conf.setMaster("local[*]");
+        conf.set("spark.driver.host", "localhost");
+        conf.set("hive.metastore.local", "true");
+        conf.set("spark.ui.enabled", "false");
+        conf.set("spark.sql.warehouse.dir", workingDir.toString());
+        conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+
+        spark = SparkSession
+                .builder()
+                .appName(SelectRelationTest.class.getSimpleName())
+                .config(conf)
+                .getOrCreate();
+    }
+
+    @AfterAll
+    public static void afterAll() throws IOException {
+        FileUtils.deleteDirectory(workingDir.toFile());
+        spark.stop();
+    }
+
+    @Test
+    public void test1() throws Exception {
+
+        final String sourcePath = getClass()
+                .getResource("/eu/dnetlib/dhp/oa/graph/dump/selectrelations")
+                .getPath();
+
+        SparkSelectValidRelationsJob.main(new String[] {
+                "-isSparkSessionManaged", Boolean.FALSE.toString(),
+                "-outputPath", workingDir.toString() + "/relation",
+                "-sourcePath", sourcePath
+        });
+
+//		dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
+
+        final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+        JavaRDD<eu.dnetlib.dhp.schema.oaf.Relation> tmp = sc
+                .textFile(workingDir.toString() + "/relation")
+                .map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.oaf.Relation.class));
+
+        org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
+                .createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.oaf.Relation.class));
+
+        Assertions.assertTrue(verificationDataset.count() == 7);
+
+    }
+
+}
\ No newline at end of file

From 8429aed6c61294f00c3a874f6b9c90c4688189df Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:49:38 +0200
Subject: [PATCH 022/106] Added resource for testing selection of valid
 relations

---
 .../dhp/oa/graph/dump/selectrelations/dataset | 10 ++++++++++
 .../oa/graph/dump/selectrelations/datasource  |  7 +++++++
 .../graph/dump/selectrelations/organization   | 19 +++++++++++++++++++
 .../dump/selectrelations/otherresearchproduct |  3 +++
 .../dhp/oa/graph/dump/selectrelations/project | 12 ++++++++++++
 .../oa/graph/dump/selectrelations/publication |  9 +++++++++
 .../oa/graph/dump/selectrelations/relation    | 15 +++++++++++++++
 .../oa/graph/dump/selectrelations/software    |  6 ++++++
 8 files changed, 81 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/dataset
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/datasource
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/organization
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/otherresearchproduct
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/project
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/publication
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/relation
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/software

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/dataset b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/dataset
new file mode 100644
index 0000000000..2b62b5f0d0
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/selectrelations/dataset
@@ -0,0 +1,10 @@
+{"author":[{"affiliation":[],"fullname":"Kooi, M.","name":"M.","pid":[],"rank":1,"surname":"Kooi"}],"bestaccessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - 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+{"author":[{"affiliation":[],"fullname":"Beckers, I.S.J.","name":"I.S.J.","pid":[],"rank":1,"surname":"Beckers"}],"bestaccessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - Subject","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":null}],"id":"dh-ch"}],"contributor":[],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"dateofacceptance":null,"dateofcollection":"","dateoftransformation":"2020-05-25T12:30:12.903Z","description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"In april 2016 is een archeologisch vooronderzoek uitgevoerd in een gepland leidingtracé langs de Schaapsdrift in De Bilt (gemeente De Bilt). De aanleiding voor het onderzoek vormt de aanleg van een nieuwe waterleiding en een beluchtingstoren op het pompstation Beerschoten. In het kader van deze ontwikkeling dient een omgevingsvergunning te worden aangevraagd. Het plangebied bestaat uit het deel van het leidingtracé waar op basis van het vigerend bestemmingsplan een dubbelbestemming ‘Waarde Archeologie’ geldt. Op basis van het bureauonderzoek werd in het plangebied een podzolgrond in de top van het dekzand verwacht, waar bovenop mogelijk een circa één-meter dikke laag stuifzand ligt. Het archeologisch niveau bevindt zich hierbij direct onder de bouwvoor c.q. humeuze bovengrond of in de top van een al dan niet begraven podzolbodem. De resten, die hierin te verwachten zijn, dateren naar verwachting in het Laat-Paleolithicum tot en met de Middeleeuwen en betreffen sporen van nederzetting en/of landgebruik uit die periode. De verwachting hierop is middelhoog. Voor wat betreft resten uit de Nieuwe tijd is de verwachting laag. In de Nieuwe tijd is het plangebied waarschijnlijk altijd heidegebied geweest. Ondanks dit verwachtingspatroon zijn in het plangebied wel diepe verstoringen te verwachten als gevolg van de aanleg van het waterpompstation. Op basis van de resultaten van het veldonderzoek blijkt dat het plangebied diep verstoord is geraakt tot tenminste 85 cm –Mv. In de meeste gevallen reikt de verstoring zelfs dieper dan 1,0 m –Mv. Er zijn tevens in het plangebied geen sporen gevonden van stuifzand of resten van oorspronkelijke bodemvorming. Ook archeologische indicatoren ontbreken. De mate van verstoring en het ontbreken van indicatoren leiden ertoe dat de archeologische verwachting voor alle archeologische perioden naar laag is bij te stellen. Er zijn namelijk geen (intacte) resten meer te verwachten."}],"device":null,"embargoenddate":null,"externalReference":[],"extraInfo":[],"format":[],"fulltext":[],"geolocation":[],"id":"50|doajarticles::1cae0b82b56ccd97c2db1f698def7074","instance":[{"accessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked Services)"},"dateofacceptance":null,"distributionlocation":"","hostedby":{"dataInfo":null,"key":"10|openaire____::c6df70599aa984f16ee52b4b86d2e89f","value":"DANS (Data Archiving and Networked 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project"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_classes","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.7542"},"qualifier":{"classid":"acm","classname":"acm","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"ComputingMilieux_LEGALASPECTSOFCOMPUTING"}],"title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Military, Healthcare, and Education Visualization Project"}]}
\ No newline at end of file

From e9a17ec8997099eaf391f30f00bc0fe4c8c95e61 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 15:53:35 +0200
Subject: [PATCH 023/106] added check to verify not to add void APC

---
 .../eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java  | 13 +++++++++----
 1 file changed, 9 insertions(+), 4 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index 1a4e7c42a9..47baee30d4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -426,10 +426,15 @@ public class ResultMapper implements Serializable {
 		Optional<Field<String>> oPca = Optional.ofNullable(i.getProcessingchargeamount());
 		Optional<Field<String>> oPcc = Optional.ofNullable(i.getProcessingchargecurrency());
 		if (oPca.isPresent() && oPcc.isPresent()) {
-			APC apc = new APC();
-			apc.setCurrency(oPcc.get().getValue());
-			apc.setAmount(oPca.get().getValue());
-			instance.setArticleprocessingcharge(apc);
+			Field<String> pca = oPca.get();
+			Field<String> pcc = oPcc.get();
+			if(!pca.getValue().trim().equals("") && !pcc.getValue().trim().equals("")){
+				APC apc = new APC();
+				apc.setCurrency(oPcc.get().getValue());
+				apc.setAmount(oPca.get().getValue());
+				instance.setArticleprocessingcharge(apc);
+			}
+
 		}
 
 	}

From f13e11e3f761c2835695ec21e698d99c454249d5 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 16:04:02 +0200
Subject: [PATCH 024/106] [aggregation] datacite wf: defined parameter
 declaring the path used to store the OAF objects produced by the
 transformation phase

---
 .../dhp/actionmanager/datacite/oozie_app/workflow.xml     | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
index 3e0c2bba64..69fc959578 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
@@ -4,6 +4,10 @@
             <name>mainPath</name>
             <description>the working path of Datacite stores</description>
         </property>
+        <property>
+            <name>oafTargetPath</name>
+            <description>the target path where the OAF records are stored</description>
+        </property>
         <property>
             <name>isLookupUrl</name>
             <description>The IS lookUp service endopoint</description>
@@ -56,7 +60,7 @@
             <arg>--master</arg><arg>yarn-cluster</arg>
             <arg>--blocksize</arg><arg>${blocksize}</arg>
         </spark>
-        <ok to="TransformJob"/>
+        <ok to="TransformDatacite"/>
         <error to="Kill"/>
     </action>
 
@@ -78,7 +82,7 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
             <arg>--sourcePath</arg><arg>${mainPath}/datacite_dump</arg>
-            <arg>--targetPath</arg><arg>${mainPath}/datacite_oaf</arg>
+            <arg>--targetPath</arg><arg>${oafTargetPath}</arg>
             <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
             <arg>--exportLinks</arg><arg>${exportLinks}</arg>
             <arg>--master</arg><arg>yarn-cluster</arg>

From 5295d106914ca9bbe4e0b34e9689f5dcd45b0159 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 16:11:46 +0200
Subject: [PATCH 025/106] added check not to dump deletedByInference entities

---
 .../dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java | 3 +++
 .../oa/graph/dump/complete/SparkSelectValidRelationsJob.java  | 4 +++-
 .../dump/complete/DumpOrganizationProjectDatasourceTest.java  | 2 +-
 3 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
index 36ced3a4ab..530f7a003f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
@@ -453,6 +453,7 @@ public class DumpGraphEntities implements Serializable {
 			.map(
 				(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
 				Encoders.bean(Organization.class))
+				.filter(Objects::nonNull)
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
@@ -460,6 +461,8 @@ public class DumpGraphEntities implements Serializable {
 	}
 
 	private static Organization mapOrganization(eu.dnetlib.dhp.schema.oaf.Organization org) {
+		if(org.getDataInfo().getDeletedbyinference())
+			return null;
 		Organization organization = new Organization();
 
 		Optional
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
index 8b477b34d6..77402ea1b9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
@@ -110,9 +110,11 @@ public class SparkSelectValidRelationsJob implements Serializable {
                                 "UNION ALL " +
                                 "SELECT id " +
                                 "FROM project " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
                                 "UNION ALL " +
                                 "SELECT id " +
-                                "FROM datasource ")
+                                "FROM datasource " +
+                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " )
                 .createOrReplaceTempView("identifiers");
 
         spark
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
index 69100a114e..89ecdfb2b4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
@@ -88,7 +88,7 @@ public class DumpOrganizationProjectDatasourceTest {
 		org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.Organization> verificationDataset = spark
 			.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.Organization.class));
 
-		Assertions.assertEquals(34, verificationDataset.count());
+		Assertions.assertEquals(15, verificationDataset.count());
 
 		verificationDataset
 			.foreach(

From 72397ea1ba4c03f306f49d5e2fe522f0503deb05 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 16:18:35 +0200
Subject: [PATCH 026/106] Added fix for community of arbitrary name length

---
 .../main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
index d20a3036e8..f5b8f1c768 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
@@ -89,7 +89,7 @@ public class DumpProducts implements Serializable {
 					return c.getId();
 				}
 				if (c.getId().contains("::") && communities.contains(c.getId().substring(0, c.getId().indexOf("::")))) {
-					return c.getId().substring(0, 3);
+					return c.getId().substring(0, c.getId().indexOf("::"));
 				}
 				return null;
 			}).filter(Objects::nonNull).collect(Collectors.toList());

From 8f322a73cba044338329eecfc00cfa38bf5eaeca Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 16:22:58 +0200
Subject: [PATCH 027/106] change because of the renaming of originalId in
 acronym

---
 .../java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
index 31d105b66f..a6757d18d4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
@@ -35,7 +35,7 @@ public class Process implements Serializable {
 				ri.setType(Constants.RESEARCH_INFRASTRUCTURE);
 			}
 			ri.setId(Utils.getContextId(ci.getId()));
-			ri.setOriginalId(ci.getId());
+			ri.setAcronym(ci.getId());
 
 			ri.setDescription(ci.getDescription());
 			ri.setName(ci.getName());

From fa720c1da44c78ea08784a32c44b71a3899f349f Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 16:59:30 +0200
Subject: [PATCH 028/106] [doiboost] added workflow for the ActionSet update
 dedicated to production

---
 .../process/oozie_app/config-default.xml      |  42 +++
 .../doiboost/process/oozie_app/workflow.xml   | 259 ++++++++++++++++++
 2 files changed, 301 insertions(+)
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/config-default.xml
new file mode 100644
index 0000000000..508202e301
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/config-default.xml
@@ -0,0 +1,42 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hive_metastore_uris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>spark2YarnHistoryServerAddress</name>
+        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
+    </property>
+    <property>
+        <name>spark2EventLogDir</name>
+        <value>/user/spark/spark2ApplicationHistory</value>
+    </property>
+    <property>
+        <name>spark2ExtraListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
+    </property>
+    <property>
+        <name>spark2SqlQueryExecutionListeners</name>
+        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml
new file mode 100644
index 0000000000..cf1cd97f7a
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml
@@ -0,0 +1,259 @@
+<workflow-app name="Generate DOIBoost ActionSet for PROD" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorIntersectionMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <!-- Itersection Parameters -->
+        <property>
+            <name>workingPath</name>
+            <description>the working Path</description>
+        </property>
+
+        <property>
+            <name>hostedByMapPath</name>
+            <description>the hostedByMap Path</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the Path of the sequence file action set</description>
+        </property>
+
+
+        <!-- Crossref Parameters -->
+        <property>
+            <name>inputPathCrossref</name>
+            <description>the Crossref input path</description>
+        </property>
+
+        <!--    MAG Parameters    -->
+        <property>
+            <name>inputPathMAG</name>
+            <description>the MAG working path</description>
+        </property>
+
+
+        <!--    UnpayWall Parameters    -->
+        <property>
+            <name>inputPathUnpayWall</name>
+            <description>the UnpayWall working path</description>
+        </property>
+
+        <!--    ORCID Parameters    -->
+        <property>
+            <name>workingPathOrcid</name>
+            <description>the ORCID working path</description>
+        </property>
+
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="resume_from"/>
+
+    <decision name="resume_from">
+        <switch>
+            <case to="ProcessMAG">${wf:conf('resumeFrom') eq 'PreprocessMag'}</case>
+            <case to="ProcessUW">${wf:conf('resumeFrom') eq 'PreprocessUW'}</case>
+            <case to="ProcessORCID">${wf:conf('resumeFrom') eq 'ProcessORCID'}</case>
+            <case to="CreateDOIBoost">${wf:conf('resumeFrom') eq 'CreateDOIBoost'}</case>
+            <case to="GenerateActionSet">${wf:conf('resumeFrom') eq 'GenerateActionSet'}</case>
+            <default to="ConvertCrossrefToOAF"/>
+        </switch>
+    </decision>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="ConvertCrossrefToOAF">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>ConvertCrossrefToOAF</name>
+            <class>eu.dnetlib.doiboost.crossref.SparkMapDumpIntoOAF</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${inputPathCrossref}/crossref_ds</arg>
+            <arg>--targetPath</arg><ar
+                g>${workingPath}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="ProcessMAG"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="ProcessMAG">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Convert Mag to OAF Dataset</name>
+            <class>eu.dnetlib.doiboost.mag.SparkProcessMAG</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorIntersectionMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${inputPathMAG}/dataset</arg>
+            <arg>--workingPath</arg><arg>${inputPathMAG}/process_p</arg>
+            <arg>--targetPath</arg><arg>${workingPath}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="ProcessUW"/>
+        <error to="Kill"/>
+    </action>
+
+    <!--  UnpayWall  SECTION -->
+
+    <action name="ProcessUW">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Convert UnpayWall to Dataset</name>
+            <class>eu.dnetlib.doiboost.uw.SparkMapUnpayWallToOAF</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${inputPathUnpayWall}/uw_extracted</arg>
+            <arg>--targetPath</arg><arg>${workingPath}/uwPublication</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="ProcessORCID"/>
+        <error to="Kill"/>
+    </action>
+
+    <!--  ORCID  SECTION -->
+    <action name="ProcessORCID">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Convert ORCID to Dataset</name>
+            <class>eu.dnetlib.doiboost.orcid.SparkConvertORCIDToOAF</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--workingPath</arg><arg>${workingPathOrcid}</arg>
+            <arg>--targetPath</arg><arg>${workingPath}/orcidPublication</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="CreateDOIBoost"/>
+        <error to="Kill"/>
+    </action>
+
+    <!-- INTERSECTION SECTION-->
+    <actio
+            n name="CreateDOIBoost">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Create DOIBoost Infospace</name>
+            <class>eu.dnetlib.doiboost.SparkGenerateDoiBoost</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorIntersectionMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--hostedByMapPath</arg><arg>${hostedByMapPath}</arg>
+            <arg>--affiliationPath</arg><arg>${inputPathMAG}/dataset/Affiliations</arg>
+            <arg>--paperAffiliationPath</arg><arg>${inputPathMAG}/dataset/PaperAuthorAffiliations</arg>
+            <arg>--workingPath</arg><arg>${workingPath}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="GenerateActionSet"/>
+        <error to="Kill"/>
+    </action>
+
+
+    <action name="GenerateActionSet">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Generate DOIBoost ActionSet</name>
+            <class>eu.dnetlib.doiboost.SparkGenerateDOIBoostActionSet</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--dbPublicationPath</arg><arg>${workingPath}/doiBoostPublicationFiltered</arg>
+            <arg>--dbDatasetPath</arg><arg>${workingPath}/crossrefDataset</arg>
+            <arg>--crossRefRelation</arg><arg>${workingPath}/crossrefRelation</arg>
+            <arg>--dbaffiliationRelationPath</arg><arg>${workingPath}/doiBoostPublicationAffiliation</arg>
+            <arg>--dbOrganizationPath</arg><arg>${workingPath}/doiBoostOrganization</arg>
+            <arg>--targetPath</arg><arg>${workingPath}/actionDataSet</arg>
+            <arg>--sFilePath</arg><arg>${outputPath}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>
\ No newline at end of file

From 084b4ef999eccd94a2c16eaffb372c2cf87c6950 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:07:46 +0200
Subject: [PATCH 029/106] added the creation of the openaireId from funder and
 grant number if the element is not present in the context profile

---
 .../dump/complete/QueryInformationSystem.java | 68 +++++++++++++++++--
 1 file changed, 63 insertions(+), 5 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
index c33a693a54..7a69c1a0dc 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
@@ -14,6 +14,7 @@ import org.jetbrains.annotations.NotNull;
 
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import eu.dnetlib.dhp.utils.DHPUtils;
 
 public class QueryInformationSystem {
 
@@ -113,14 +114,71 @@ public class QueryInformationSystem {
 	@NotNull
 	private List<String> getCategoryList(Element el, String prefix) {
 		List<String> datasourceList = new ArrayList<>();
-		for (Object node : el.selectNodes(".//param")) {
-			Node n = (Node) node;
-			if (n.valueOf("./@name").equals("openaireId")) {
-				datasourceList.add(prefix + "|" + n.getText());
-			}
+		for (Object node : el.selectNodes(".//concept")) {
+			String oid = getOpenaireId((Node) node, prefix);
+			if (oid != null)
+				datasourceList.add(oid);
 		}
 
 		return datasourceList;
 	}
 
+	private String getOpenaireId(Node el, String prefix) {
+		for (Object node : el.selectNodes(".//param")) {
+			Node n = (Node) node;
+			if (n.valueOf("./@name").equals("openaireId")) {
+				return prefix + "|" + n.getText();
+			}
+		}
+
+		return makeOpenaireId(el, prefix);
+
+	}
+
+	private String makeOpenaireId(Node el, String prefix) {
+		String funder = null;
+		String grantId = null;
+		String funding = null;
+		for (Object node : el.selectNodes(".//param")) {
+			Node n = (Node) node;
+			switch (n.valueOf("./@name")) {
+				case "funding":
+					funding = n.getText();
+					break;
+				case "funder":
+					funder = n.getText();
+					break;
+				case "CD_PROJECT_NUMBER":
+					grantId = n.getText();
+					break;
+			}
+		}
+		String nsp = null;
+		switch (funder.toLowerCase()) {
+			case "ec":
+				if (funding == null) {
+					return null;
+				}
+				if (funding.toLowerCase().startsWith("h2020")) {
+					nsp = "corda__h2020::";
+				} else {
+					nsp = "corda_______::";
+				}
+				break;
+			case "tubitak":
+				nsp = "tubitakf____::";
+				break;
+			case "dfg":
+				nsp = "dfgf________::";
+				break;
+			default:
+				nsp = funder.toLowerCase();
+				for (int i = funder.length(); i < 12; i++)
+					nsp += "_";
+				nsp += "::";
+		}
+
+		return prefix + "|" + nsp + DHPUtils.md5(grantId);
+	}
+
 }

From 59615da65e1a6984e82d23dff5b860800d5939f6 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:09:15 +0200
Subject: [PATCH 030/106] Add test to verify the creation of relation between
 context and projects

---
 .../dump/complete/CreateRelationTest.java     | 152 +++++++++++++++++-
 1 file changed, 150 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
index b556fa2d66..5f21e0bc5a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
@@ -1,6 +1,8 @@
 
 package eu.dnetlib.dhp.oa.graph.dump.complete;
 
+
+import eu.dnetlib.dhp.schema.oaf.Project;
 import java.util.*;
 import java.util.function.Consumer;
 import java.util.stream.Collectors;
@@ -203,6 +205,7 @@ public class CreateRelationTest {
 				"    <param name=\"suggestedAcknowledgement\"/>\n" +
 				"    <param name=\"zenodoCommunity\">oac_ni</param>\n" +
 				"    <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
+					"    <category claim=\"false\" id=\"ni::projects\" label=\"NI Content providers\"/>\n" +
 				"    <category claim=\"false\" id=\"ni::contentproviders\" label=\"NI Content providers\">\n" +
 				"        <concept claim=\"false\" id=\"ni::contentproviders::1\" label=\"OpenNeuro\">\n" +
 				"            <param name=\"openaireId\">re3data_____::5b9bf9171d92df854cf3c520692e9122</param>\n" +
@@ -437,8 +440,58 @@ public class CreateRelationTest {
 				"    <param name=\"suggestedAcknowledgement\"/>\n" +
 				"    <param name=\"zenodoCommunity\">oaa_elixir-gr</param>\n" +
 				"    <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
-				"    <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\"/>\n" +
-				"    <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
+				"    <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\">\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::12\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">BIO-INFORMATICS RESEARCH NETWORK COORDINATING CENTER (BIRN-CC)</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">1U24RR025736-01</param>\n" +
+					"                        <param name=\"funder\">NIH</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::13\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">COLLABORATIVE RESEARCH: The Cognitive Neuroscience of Category Learning</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">0223843</param>\n" +
+					"                        <param name=\"funder\">NSF</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::14\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">5R01MH082795-05</param>\n" +
+					"                        <param name=\"funder\">NIH</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::15\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">Fragmented early life environmental and emotional / cognitive vulnerabilities</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">1P50MH096889-01A1</param>\n" +
+					"                        <param name=\"funder\">NIH</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::16\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">Enhancement of the 1000 Functional Connectome Project</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">1R03MH096321-01A1</param>\n" +
+					"                        <param name=\"funder\">TUBITAK</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::17\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">CRCNS Data Sharing: An open data repository for cognitive neuroscience: The OpenfMRI Project</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">1131441</param>\n" +
+					"                        <param name=\"funder\">NSF</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">Enhancing Human Cortical Plasticity: Visual Psychophysics and fMRI</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">0121950</param>\n" +
+					"                        <param name=\"funder\">NSF</param>\n" +
+					"                    </concept>\n" +
+					"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
+					"                        <param name=\"projectfullname\">Transforming statistical methodology for neuroimaging meta-analysis.</param>\n" +
+					"                        <param name=\"acronym\"/>\n" +
+					"                        <param name=\"CD_PROJECT_NUMBER\">100309</param>\n" +
+					"                        <param name=\"funder\">WT</param>\n" +
+					"                    </concept>\n" +
+					"                </category>" +
+
+					"    <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
 				+
 				"        <concept claim=\"false\" id=\"elixir-gr::contentproviders::1\" label=\"bio.tools\">\n" +
 				"            <param name=\"openaireId\">rest________::b8e502674c3c3499d5374e9b2ea6d8d5</param>\n" +
@@ -566,4 +619,99 @@ public class CreateRelationTest {
 					tmp.contains("10|doajarticles::2899208a99aa7d142646e0a80bfeef05"));
 
 	}
+
+	@Test
+	public void test2() {
+		List<ContextInfo> cInfoList = new ArrayList<>();
+		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
+
+		queryInformationSystem
+				.getContextRelation(consumer, "projects", ModelSupport.getIdPrefix(Project.class));
+
+		cInfoList.forEach(c -> System.out.println(new Gson().toJson(c)));
+
+
+		List<Relation> rList = new ArrayList<>();
+
+		cInfoList.forEach(cInfo -> Process.getRelation(cInfo).forEach(rList::add));
+
+		Assertions.assertEquals(44 , rList.size());
+
+		Assertions
+				.assertFalse(
+						rList
+								.stream()
+								.map(r -> r.getSource().getId())
+								.collect(Collectors.toSet())
+								.contains(
+										String
+												.format(
+														"%s|%s::%s", Constants.CONTEXT_ID,
+														Constants.CONTEXT_NS_PREFIX,
+														DHPUtils.md5("dh-ch"))));
+
+		Assertions
+				.assertEquals(
+						2,
+						rList
+								.stream()
+								.filter(
+										r -> r
+												.getSource()
+												.getId()
+												.equals(
+														String
+																.format(
+																		"%s|%s::%s", Constants.CONTEXT_ID,
+																		Constants.CONTEXT_NS_PREFIX,
+																		DHPUtils.md5("clarin"))))
+								.collect(Collectors.toList())
+								.size());
+
+		Assertions
+				.assertEquals(
+						2,
+						rList
+								.stream()
+								.filter(
+										r -> r
+												.getTarget()
+												.getId()
+												.equals(
+														String
+																.format(
+																		"%s|%s::%s", Constants.CONTEXT_ID,
+																		Constants.CONTEXT_NS_PREFIX,
+																		DHPUtils.md5("clarin"))))
+								.collect(Collectors.toList())
+								.size());
+
+		Set<String> tmp = rList
+				.stream()
+				.filter(
+						r -> r
+								.getSource()
+								.getId()
+								.equals(
+										String
+												.format(
+														"%s|%s::%s", Constants.CONTEXT_ID,
+														Constants.CONTEXT_NS_PREFIX,
+														DHPUtils.md5("clarin"))))
+				.map(r -> r.getTarget().getId())
+				.collect(Collectors.toSet());
+
+		Assertions
+				.assertTrue(
+						tmp.contains("40|corda__h2020::b5a4eb56bf84bef2ebc193306b4d423f") &&
+								tmp.contains("40|corda_______::ef782b2d85676aa3e5a907427feb18c4") );
+
+		rList.forEach(rel -> {
+			if (rel.getSource().getId().startsWith("40|")){
+				String proj = rel.getSource().getId().substring(3);
+				Assertions.assertTrue(proj.substring(0, proj.indexOf("::")).length() == 12);
+			}
+		});
+
+	}
 }

From 618d2de2da0b9749b5eca6097faee25706d08956 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:10:02 +0200
Subject: [PATCH 031/106] minor changes and refactoring

---
 .../dhp/oa/graph/dump/ResultMapper.java       |   2 +-
 .../dump/complete/CreateContextRelation.java  |   8 +-
 .../dump/complete/DumpGraphEntities.java      |   4 +-
 .../dhp/oa/graph/dump/complete/Extractor.java |   4 +-
 .../SparkSelectValidRelationsJob.java         | 188 +++++++++---------
 .../dhp/oa/graph/dump/DumpJobTest.java        |  36 ++--
 .../graph/dump/complete/CreateEntityTest.java |  10 +-
 .../dump/complete/SelectRelationTest.java     |  99 ++++-----
 8 files changed, 176 insertions(+), 175 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index 47baee30d4..fe9b4e443d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -428,7 +428,7 @@ public class ResultMapper implements Serializable {
 		if (oPca.isPresent() && oPcc.isPresent()) {
 			Field<String> pca = oPca.get();
 			Field<String> pcc = oPcc.get();
-			if(!pca.getValue().trim().equals("") && !pcc.getValue().trim().equals("")){
+			if (!pca.getValue().trim().equals("") && !pcc.getValue().trim().equals("")) {
 				APC apc = new APC();
 				apc.setCurrency(oPcc.get().getValue());
 				apc.setAmount(oPca.get().getValue());
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
index 102406315b..59f660525f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
@@ -70,10 +70,10 @@ public class CreateContextRelation implements Serializable {
 		cce.execute(Process::getRelation, CONTEX_RELATION_DATASOURCE, ModelSupport.getIdPrefix(Datasource.class));
 
 		log.info("Creating relations for projects... ");
-//		cce
-//			.execute(
-//				Process::getRelation, CONTEX_RELATION_PROJECT,
-//				ModelSupport.getIdPrefix(eu.dnetlib.dhp.schema.oaf.Project.class));
+		cce
+			.execute(
+				Process::getRelation, CONTEX_RELATION_PROJECT,
+				ModelSupport.getIdPrefix(eu.dnetlib.dhp.schema.oaf.Project.class));
 
 		cce.close();
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
index 530f7a003f..b843ec3657 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
@@ -453,7 +453,7 @@ public class DumpGraphEntities implements Serializable {
 			.map(
 				(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
 				Encoders.bean(Organization.class))
-				.filter(Objects::nonNull)
+			.filter(Objects::nonNull)
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
@@ -461,7 +461,7 @@ public class DumpGraphEntities implements Serializable {
 	}
 
 	private static Organization mapOrganization(eu.dnetlib.dhp.schema.oaf.Organization org) {
-		if(org.getDataInfo().getDeletedbyinference())
+		if (org.getDataInfo().getDeletedbyinference())
 			return null;
 		Organization organization = new Organization();
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
index 31886d1b13..f76f920137 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
@@ -129,7 +129,7 @@ public class Extractor implements Serializable {
 
 				return relationList.iterator();
 			}, Encoders.bean(Relation.class))
-			.write()
+				.write()
 			.option("compression", "gzip")
 			.mode(SaveMode.Overwrite)
 			.json(outputPath);
@@ -147,7 +147,7 @@ public class Extractor implements Serializable {
 					.map(
 						paction -> Provenance
 							.newInstance(
-								paction.getClassid(),
+								paction.getClassname(),
 								dinfo.getTrust()))
 					.orElse(
 						Provenance
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
index 77402ea1b9..e729e13dfa 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
@@ -1,3 +1,4 @@
+
 package eu.dnetlib.dhp.oa.graph.dump.complete;
 
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
@@ -25,113 +26,112 @@ import eu.dnetlib.dhp.schema.oaf.*;
  * with this view for both the source and the target
  */
 
-
 public class SparkSelectValidRelationsJob implements Serializable {
 
-    private static final Logger log = LoggerFactory.getLogger(SparkSelectValidRelationsJob.class);
+	private static final Logger log = LoggerFactory.getLogger(SparkSelectValidRelationsJob.class);
 
-    public static void main(String[] args) throws Exception {
-        String jsonConfiguration = IOUtils
-                .toString(
-                        SparkSelectValidRelationsJob.class
-                                .getResourceAsStream(
-                                        "/eu/dnetlib/dhp/oa/graph/dump/complete/input_relationdump_parameters.json"));
+	public static void main(String[] args) throws Exception {
+		String jsonConfiguration = IOUtils
+			.toString(
+				SparkSelectValidRelationsJob.class
+					.getResourceAsStream(
+						"/eu/dnetlib/dhp/oa/graph/dump/complete/input_relationdump_parameters.json"));
 
-        final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
-        parser.parseArgument(args);
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+		parser.parseArgument(args);
 
-        Boolean isSparkSessionManaged = Optional
-                .ofNullable(parser.get("isSparkSessionManaged"))
-                .map(Boolean::valueOf)
-                .orElse(Boolean.TRUE);
-        log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+		Boolean isSparkSessionManaged = Optional
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
 
-        final String inputPath = parser.get("sourcePath");
-        log.info("inputPath: {}", inputPath);
+		final String inputPath = parser.get("sourcePath");
+		log.info("inputPath: {}", inputPath);
 
-        final String outputPath = parser.get("outputPath");
-        log.info("outputPath: {}", outputPath);
+		final String outputPath = parser.get("outputPath");
+		log.info("outputPath: {}", outputPath);
 
-        SparkConf conf = new SparkConf();
+		SparkConf conf = new SparkConf();
 
-        runWithSparkSession(
-                conf,
-                isSparkSessionManaged,
-                spark -> {
-                    Utils.removeOutputDir(spark, outputPath);
-                    selectValidRelation(spark, inputPath, outputPath);
+		runWithSparkSession(
+			conf,
+			isSparkSessionManaged,
+			spark -> {
+				Utils.removeOutputDir(spark, outputPath);
+				selectValidRelation(spark, inputPath, outputPath);
 
-                });
+			});
 
-    }
+	}
 
-    private static void selectValidRelation(SparkSession spark, String inputPath, String outputPath) {
-        Dataset<Relation> relation = Utils.readPath(spark, inputPath + "/relation", Relation.class);
-        Dataset<Publication> publication = Utils.readPath(spark, inputPath + "/publication", Publication.class);
-        Dataset<eu.dnetlib.dhp.schema.oaf.Dataset> dataset = Utils
-                .readPath(spark, inputPath + "/dataset", eu.dnetlib.dhp.schema.oaf.Dataset.class);
-        Dataset<Software> software = Utils.readPath(spark, inputPath + "/software", Software.class);
-        Dataset<OtherResearchProduct> other = Utils
-                .readPath(spark, inputPath + "/otherresearchproduct", OtherResearchProduct.class);
-        Dataset<Organization> organization = Utils.readPath(spark, inputPath + "/organization", Organization.class);
-        Dataset<Project> project = Utils.readPath(spark, inputPath + "/project", Project.class);
-        Dataset<Datasource> datasource = Utils.readPath(spark, inputPath + "/datasource", Datasource.class);
+	private static void selectValidRelation(SparkSession spark, String inputPath, String outputPath) {
+		Dataset<Relation> relation = Utils.readPath(spark, inputPath + "/relation", Relation.class);
+		Dataset<Publication> publication = Utils.readPath(spark, inputPath + "/publication", Publication.class);
+		Dataset<eu.dnetlib.dhp.schema.oaf.Dataset> dataset = Utils
+			.readPath(spark, inputPath + "/dataset", eu.dnetlib.dhp.schema.oaf.Dataset.class);
+		Dataset<Software> software = Utils.readPath(spark, inputPath + "/software", Software.class);
+		Dataset<OtherResearchProduct> other = Utils
+			.readPath(spark, inputPath + "/otherresearchproduct", OtherResearchProduct.class);
+		Dataset<Organization> organization = Utils.readPath(spark, inputPath + "/organization", Organization.class);
+		Dataset<Project> project = Utils.readPath(spark, inputPath + "/project", Project.class);
+		Dataset<Datasource> datasource = Utils.readPath(spark, inputPath + "/datasource", Datasource.class);
 
-        relation.createOrReplaceTempView("relation");
-        publication.createOrReplaceTempView("publication");
-        dataset.createOrReplaceTempView("dataset");
-        other.createOrReplaceTempView("other");
-        software.createOrReplaceTempView("software");
-        organization.createOrReplaceTempView("organization");
-        project.createOrReplaceTempView("project");
-        datasource.createOrReplaceTempView("datasource");
+		relation.createOrReplaceTempView("relation");
+		publication.createOrReplaceTempView("publication");
+		dataset.createOrReplaceTempView("dataset");
+		other.createOrReplaceTempView("other");
+		software.createOrReplaceTempView("software");
+		organization.createOrReplaceTempView("organization");
+		project.createOrReplaceTempView("project");
+		datasource.createOrReplaceTempView("datasource");
 
-        spark
-                .sql(
-                        "SELECT id " +
-                                "FROM publication " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM dataset " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM other " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM software " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM organization " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM project " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
-                                "UNION ALL " +
-                                "SELECT id " +
-                                "FROM datasource " +
-                                "WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " )
-                .createOrReplaceTempView("identifiers");
+		spark
+			.sql(
+				"SELECT id " +
+					"FROM publication " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM dataset " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM other " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM software " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM organization " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM project " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false " +
+					"UNION ALL " +
+					"SELECT id " +
+					"FROM datasource " +
+					"WHERE datainfo.deletedbyinference = false AND  datainfo.invisible = false ")
+			.createOrReplaceTempView("identifiers");
 
-        spark
-                .sql(
-                        "SELECT relation.* " +
-                                "FROM relation " +
-                                "JOIN identifiers i1 " +
-                                "ON source = i1.id " +
-                                "JOIN identifiers i2 " +
-                                "ON target = i2.id " +
-                                "WHERE datainfo.deletedbyinference = false")
-                .as(Encoders.bean(Relation.class))
-                .write()
-                .option("compression", "gzip")
-                .mode(SaveMode.Overwrite)
-                .json(outputPath);
-        ;
+		spark
+			.sql(
+				"SELECT relation.* " +
+					"FROM relation " +
+					"JOIN identifiers i1 " +
+					"ON source = i1.id " +
+					"JOIN identifiers i2 " +
+					"ON target = i2.id " +
+					"WHERE datainfo.deletedbyinference = false")
+			.as(Encoders.bean(Relation.class))
+			.write()
+			.option("compression", "gzip")
+			.mode(SaveMode.Overwrite)
+			.json(outputPath);
+		;
 
-    }
-}
\ No newline at end of file
+	}
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index f0842c8445..6b64a4124d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -412,40 +412,42 @@ public class DumpJobTest {
 	@Test
 	public void testArticlePCA() {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_pca")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(
-						// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+			.run(
+				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<GraphResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
 
 		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(23, verificationDataset.count());
-		//verificationDataset.show(false);
+		// verificationDataset.show(false);
 
 		Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
 
 		verificationDataset.createOrReplaceTempView("check");
 
-		org.apache.spark.sql.Dataset<Row> temp = spark.sql("select id " +
-				"from check " +
-				"lateral view explode (instance) i as inst " +
-				"where inst.articleprocessingcharge is not null");
+		org.apache.spark.sql.Dataset<Row> temp = spark
+			.sql(
+				"select id " +
+					"from check " +
+					"lateral view explode (instance) i as inst " +
+					"where inst.articleprocessingcharge is not null");
 
 		Assertions.assertTrue(temp.count() == 2);
 
@@ -453,8 +455,6 @@ public class DumpJobTest {
 
 		Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
 
-
-
 //		verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
 //				.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
 //				.count()
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateEntityTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateEntityTest.java
index 3ecbd18943..679c093936 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateEntityTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateEntityTest.java
@@ -97,7 +97,7 @@ public class CreateEntityTest {
 		Assertions.assertEquals(12, riList.size());
 
 		riList.stream().forEach(c -> {
-			switch (c.getOriginalId()) {
+			switch (c.getAcronym()) {
 				case "mes":
 					Assertions
 						.assertTrue(c.getType().equals(eu.dnetlib.dhp.oa.graph.dump.Constants.RESEARCH_COMMUNITY));
@@ -115,9 +115,9 @@ public class CreateEntityTest {
 									String
 										.format(
 											"%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
-											DHPUtils.md5(c.getOriginalId()))));
+											DHPUtils.md5(c.getAcronym()))));
 					Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_mes"));
-					Assertions.assertTrue("mes".equals(c.getOriginalId()));
+					Assertions.assertTrue("mes".equals(c.getAcronym()));
 					break;
 				case "clarin":
 					Assertions
@@ -130,9 +130,9 @@ public class CreateEntityTest {
 									String
 										.format(
 											"%s|%s::%s", Constants.CONTEXT_ID, Constants.CONTEXT_NS_PREFIX,
-											DHPUtils.md5(c.getOriginalId()))));
+											DHPUtils.md5(c.getAcronym()))));
 					Assertions.assertTrue(c.getZenodo_community().equals("https://zenodo.org/communities/oac_clarin"));
-					Assertions.assertTrue("clarin".equals(c.getOriginalId()));
+					Assertions.assertTrue("clarin".equals(c.getAcronym()));
 					break;
 			}
 			// TODO add check for all the others Entities
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java
index 248bd72568..3e4ab93c55 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/SelectRelationTest.java
@@ -1,3 +1,4 @@
+
 package eu.dnetlib.dhp.oa.graph.dump.complete;
 
 import java.io.IOException;
@@ -28,72 +29,72 @@ import net.sf.saxon.expr.instruct.ForEach;
 
 public class SelectRelationTest {
 
-    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
 
-    private static SparkSession spark;
+	private static SparkSession spark;
 
-    private static Path workingDir;
+	private static Path workingDir;
 
-    private static final Logger log = LoggerFactory
-            .getLogger(SelectRelationTest.class);
+	private static final Logger log = LoggerFactory
+		.getLogger(SelectRelationTest.class);
 
-    private static HashMap<String, String> map = new HashMap<>();
+	private static HashMap<String, String> map = new HashMap<>();
 
-    @BeforeAll
-    public static void beforeAll() throws IOException {
-        workingDir = Files
-                .createTempDirectory(SelectRelationTest.class.getSimpleName());
-        log.info("using work dir {}", workingDir);
+	@BeforeAll
+	public static void beforeAll() throws IOException {
+		workingDir = Files
+			.createTempDirectory(SelectRelationTest.class.getSimpleName());
+		log.info("using work dir {}", workingDir);
 
-        SparkConf conf = new SparkConf();
-        conf.setAppName(SelectRelationTest.class.getSimpleName());
+		SparkConf conf = new SparkConf();
+		conf.setAppName(SelectRelationTest.class.getSimpleName());
 
-        conf.setMaster("local[*]");
-        conf.set("spark.driver.host", "localhost");
-        conf.set("hive.metastore.local", "true");
-        conf.set("spark.ui.enabled", "false");
-        conf.set("spark.sql.warehouse.dir", workingDir.toString());
-        conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+		conf.setMaster("local[*]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.toString());
+		conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
 
-        spark = SparkSession
-                .builder()
-                .appName(SelectRelationTest.class.getSimpleName())
-                .config(conf)
-                .getOrCreate();
-    }
+		spark = SparkSession
+			.builder()
+			.appName(SelectRelationTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
+	}
 
-    @AfterAll
-    public static void afterAll() throws IOException {
-        FileUtils.deleteDirectory(workingDir.toFile());
-        spark.stop();
-    }
+	@AfterAll
+	public static void afterAll() throws IOException {
+		FileUtils.deleteDirectory(workingDir.toFile());
+		spark.stop();
+	}
 
-    @Test
-    public void test1() throws Exception {
+	@Test
+	public void test1() throws Exception {
 
-        final String sourcePath = getClass()
-                .getResource("/eu/dnetlib/dhp/oa/graph/dump/selectrelations")
-                .getPath();
+		final String sourcePath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/selectrelations")
+			.getPath();
 
-        SparkSelectValidRelationsJob.main(new String[] {
-                "-isSparkSessionManaged", Boolean.FALSE.toString(),
-                "-outputPath", workingDir.toString() + "/relation",
-                "-sourcePath", sourcePath
-        });
+		SparkSelectValidRelationsJob.main(new String[] {
+			"-isSparkSessionManaged", Boolean.FALSE.toString(),
+			"-outputPath", workingDir.toString() + "/relation",
+			"-sourcePath", sourcePath
+		});
 
 //		dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
 
-        final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
-        JavaRDD<eu.dnetlib.dhp.schema.oaf.Relation> tmp = sc
-                .textFile(workingDir.toString() + "/relation")
-                .map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.oaf.Relation.class));
+		JavaRDD<eu.dnetlib.dhp.schema.oaf.Relation> tmp = sc
+			.textFile(workingDir.toString() + "/relation")
+			.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.oaf.Relation.class));
 
-        org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
-                .createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.oaf.Relation.class));
+		org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
+			.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.oaf.Relation.class));
 
-        Assertions.assertTrue(verificationDataset.count() == 7);
+		Assertions.assertTrue(verificationDataset.count() == 7);
 
-    }
+	}
 
-}
\ No newline at end of file
+}

From d418c309f57518a7e1d25fb45c36b145b4dac902 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:11:49 +0200
Subject: [PATCH 032/106] removed the part after part-x- in the file name
 generated by spark. It was too long and created problems while creating the
 tar entries

---
 .../main/java/eu/dnetlib/dhp/common/MakeTarArchive.java    | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/common/MakeTarArchive.java b/dhp-common/src/main/java/eu/dnetlib/dhp/common/MakeTarArchive.java
index 7dc0e44177..518dfefe09 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/common/MakeTarArchive.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/common/MakeTarArchive.java
@@ -90,6 +90,13 @@ public class MakeTarArchive implements Serializable {
 		String p_string = p.toString();
 		if (!p_string.endsWith("_SUCCESS")) {
 			String name = p_string.substring(p_string.lastIndexOf("/") + 1);
+			if (name.startsWith("part-") & name.length() > 10) {
+				String tmp = name.substring(0, 10);
+				if (name.contains(".")) {
+					tmp += name.substring(name.indexOf("."));
+				}
+				name = tmp;
+			}
 			TarArchiveEntry entry = new TarArchiveEntry(dir_name + "/" + name);
 			entry.setSize(fileStatus.getLen());
 			current_size += fileStatus.getLen();

From 734de62474089e7111debe5b39be0b1da05c8a43 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:26:04 +0200
Subject: [PATCH 033/106] [doiboost] added workflow for the ActionSet update
 dedicated to production

---
 .../eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml  | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml
index cf1cd97f7a..f845d97f30 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/process/oozie_app/workflow.xml
@@ -106,8 +106,7 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
             <arg>--sourcePath</arg><arg>${inputPathCrossref}/crossref_ds</arg>
-            <arg>--targetPath</arg><ar
-                g>${workingPath}</arg>
+            <arg>--targetPath</arg><arg>${workingPath}</arg>
             <arg>--master</arg><arg>yarn-cluster</arg>
         </spark>
         <ok to="ProcessMAG"/>
@@ -195,8 +194,7 @@
     </action>
 
     <!-- INTERSECTION SECTION-->
-    <actio
-            n name="CreateDOIBoost">
+    <action name="CreateDOIBoost">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn-cluster</master>
             <mode>cluster</mode>

From 5e38c7f42da63cd2be6078ea1b443eecf5944fb2 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:32:38 +0200
Subject: [PATCH 034/106] dumping only communities with status all

---
 .../eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index d118accbae..fe40369250 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -20,7 +20,7 @@ public class QueryInformationSystem {
 	private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
 		+
 		"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
-		" and ($x//context/param[./@name = 'status']/text() = 'manager'  or $x//context/param[./@name = 'status']/text() = 'all') "
+		" and ($x//context/param[./@name = 'status']/text() = 'all') "
 		+
 		"  return " +
 		"<community> " +

From d70f8c96fdb6bde8b5b2e1e4fb74a86beae80276 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 17:34:53 +0200
Subject: [PATCH 035/106] funding contains and not starts with h2020

---
 .../dhp/oa/graph/dump/complete/QueryInformationSystem.java      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
index 7a69c1a0dc..3736b73807 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
@@ -159,7 +159,7 @@ public class QueryInformationSystem {
 				if (funding == null) {
 					return null;
 				}
-				if (funding.toLowerCase().startsWith("h2020")) {
+				if (funding.toLowerCase().contains("h2020")) {
 					nsp = "corda__h2020::";
 				} else {
 					nsp = "corda_______::";

From c028feef4f5664002a8733bfac072a6652889d93 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:06:44 +0200
Subject: [PATCH 036/106] workflow for the dump as sub workflows

---
 .../dump/wf/main/oozie_app/config-default.xml |  30 +
 .../graph/dump/wf/main/oozie_app/import.txt   |   4 +
 .../graph/dump/wf/main/oozie_app/workflow.xml | 306 ++++++++++
 .../oozie_app/config-default.xml              |  30 +
 .../oozie_app/workflow.xml                    | 347 +++++++++++
 .../community/oozie_app/config-default.xml    |  30 +
 .../community/oozie_app/import.txt            |   2 +
 .../community/oozie_app/workflow.xml          | 145 +++++
 .../complete/oozie_app/config-default.xml     |  30 +
 .../complete/oozie_app/workflow.xml           | 537 ++++++++++++++++++
 .../funder/oozie_app/config-default.xml       |   0
 .../subworkflows/funder/oozie_app/import.txt  |   2 +
 .../funder/oozie_app/workflow.xml             | 256 +++++++++
 13 files changed, 1719 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/import.txt
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/import.txt
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/import.txt
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/config-default.xml
new file mode 100644
index 0000000000..d262cb6e05
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/config-default.xml
@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hiveMetastoreUris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hiveJdbcUrl</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
+    </property>
+    <property>
+        <name>hiveDbName</name>
+        <value>openaire</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/import.txt b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/import.txt
new file mode 100644
index 0000000000..bf55947d14
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/import.txt
@@ -0,0 +1,4 @@
+## This is a classpath-based import file (this header is required)
+dump_complete classpath eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app
+dump_funder classpath eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app
+dump_community classpath eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/workflow.xml
new file mode 100644
index 0000000000..2a612dec59
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/main/oozie_app/workflow.xml
@@ -0,0 +1,306 @@
+<workflow-app name="dump_graph" xmlns="uri:oozie:workflow:0.5">
+
+    <parameters>
+        <property>
+            <name>singleDeposition</name>
+            <description>Indicates if it is a single community deposition</description>
+        </property>
+        <property>
+            <name>communityId</name>
+            <description>the id of the community to be dumped if a dump for a single community should be done</description>
+        </property>
+        <property>
+            <name>dumpType</name>
+            <description>the type of the dump one of {complete, community, funder}</description>
+        </property>
+        <property>
+            <name>onlyUpload</name>
+            <description>true if the dump is already done and should only be upload in zenodo</description>
+        </property>
+        <property>
+            <name>upload</name>
+            <description>true if the dump should be upload in zenodo</description>
+        </property>
+        <property>
+            <name>sourcePath</name>
+            <description>the source path</description>
+        </property>
+        <property>
+            <name>isLookUpUrl</name>
+            <description>the isLookup service endpoint</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the output path</description>
+        </property>
+        <property>
+            <name>resultAggregation</name>
+            <description>true if all the result type have to be dumped under result. false otherwise</description>
+        </property>
+        <property>
+            <name>accessToken</name>
+            <description>the access token used for the deposition in Zenodo</description>
+        </property>
+        <property>
+            <name>connectionUrl</name>
+            <description>the connection url for Zenodo</description>
+        </property>
+        <property>
+            <name>metadata</name>
+            <description> the metadata associated to the deposition</description>
+        </property>
+        <property>
+            <name>depositionType</name>
+            <description>the type of deposition we want to perform. "new" for brand new deposition, "version" for a new version of a published deposition (in this case the concept record id must be provided), "upload" to upload content to an open deposition for which we already have the deposition id (in this case the deposition id should be provided)</description>
+        </property>
+        <property>
+            <name>conceptRecordId</name>
+            <description>for new version, the id of the record for the old deposition</description>
+        </property>
+        <property>
+            <name>depositionId</name>
+            <description>the depositionId of a deposition open that has to be added content</description>
+        </property>
+        <property>
+            <name>organizationCommunityMap</name>
+            <description>the organization community map</description>
+        </property>
+
+        <property>
+            <name>hiveDbName</name>
+            <description>the target hive database name</description>
+        </property>
+        <property>
+            <name>hiveJdbcUrl</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hiveMetastoreUris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+
+        </configuration>
+    </global>
+
+    <start to="only_upload"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <decision name="only_upload">
+        <switch>
+            <case to="send_zenodo">${wf:conf('onlyUpload') eq true}</case>
+            <default to="reset_outputpath"/>
+        </switch>
+    </decision>
+
+    <action name="reset_outputpath">
+        <fs>
+            <delete path="${outputPath}"/>
+            <mkdir path="${outputPath}"/>
+        </fs>
+        <ok to="save_community_map"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="save_community_map">
+        <java>
+            <main-class>eu.dnetlib.dhp.oa.graph.dump.SaveCommunityMap</main-class>
+            <arg>--outputPath</arg><arg>${workingDir}/communityMap</arg>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
+            <arg>--singleDeposition</arg><arg>${singleDeposition}</arg>
+            <arg>--communityId</arg><arg>${communityId}</arg>
+        </java>
+        <ok to="choose_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="choose_dump">
+        <switch>
+            <case to="dump_funder">${wf:conf('dumpType') eq "funder"}</case>
+            <case to="dump_community">${wf:conf('dumpType') eq "community"}</case>
+            <default to="dump_complete"/>
+        </switch>
+    </decision>
+
+    <!-- Sub-workflow which runs the dump for the complete graph -->
+    <action name="dump_complete">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/dump_complete
+            </app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>communityMapPath</name>
+                    <value>${workingDir}/communityMap</value>
+                </property>
+                <property>
+                    <name>outputPath</name>
+                    <value>${workingDir}/tar</value>
+                </property>
+                <property>
+                    <name>sourcePath</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>organizationCommunityMap</name>
+                    <value>${organizationCommunityMap}</value>
+                </property>
+                <property>
+                    <name>isLookUpUrl</name>
+                    <value>${isLookUpUrl}</value>
+                </property>
+                <property>
+                    <name>resultAggregation</name>
+                    <value>${resultAggregation}</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="make_archive" />
+        <error to="Kill" />
+    </action>
+
+    <!-- Sub-workflow which runs the dump for the complete graph -->
+    <action name="dump_community">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/dump_community
+            </app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>sourcePath</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>communityMapPath</name>
+                    <value>${workingDir}/communityMap</value>
+                </property>
+                <property>
+                    <name>outputPath</name>
+                    <value>${workingDir}/tar</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="make_archive" />
+        <error to="Kill" />
+    </action>
+
+    <action name="dump_funder">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/dump_funder
+            </app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>communityMapPath</name>
+                    <value>${workingDir}/communityMap</value>
+                </property>
+                <property>
+                    <name>outputPath</name>
+                    <value>${workingDir}/tar</value>
+                </property>
+                <property>
+                    <name>sourcePath</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>dumpType</name>
+                    <value>${dumpType}</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="make_archive" />
+        <error to="Kill" />
+    </action>
+
+    <action name="make_archive">
+        <java>
+            <main-class>eu.dnetlib.dhp.oa.graph.dump.MakeTar</main-class>
+            <arg>--hdfsPath</arg><arg>${outputPath}</arg>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--sourcePath</arg><arg>${workingDir}/tar</arg>
+        </java>
+        <ok to="should_upload"/>
+        <error to="Kill"/>
+    </action>
+
+    <decision name="should_upload">
+        <switch>
+            <case to="send_zenodo">${wf:conf('upload') eq true}</case>
+            <default to="End"/>
+        </switch>
+    </decision>
+
+    <action name="send_zenodo">
+        <java>
+            <main-class>eu.dnetlib.dhp.oa.graph.dump.SendToZenodoHDFS</main-class>
+            <arg>--hdfsPath</arg><arg>${outputPath}</arg>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--accessToken</arg><arg>${accessToken}</arg>
+            <arg>--connectionUrl</arg><arg>${connectionUrl}</arg>
+            <arg>--metadata</arg><arg>${metadata}</arg>
+            <arg>--conceptRecordId</arg><arg>${conceptRecordId}</arg>
+            <arg>--depositionType</arg><arg>${depositionType}</arg>
+            <arg>--depositionId</arg><arg>${depositionId}</arg>
+        </java>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+
+</workflow-app>
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/config-default.xml
new file mode 100644
index 0000000000..e5ec3d0aee
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/config-default.xml
@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hiveMetastoreUris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hiveJdbcUrl</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
+    </property>
+    <property>
+        <name>hiveDbName</name>
+        <value>openaire</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/workflow.xml
new file mode 100644
index 0000000000..5f954ff38a
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app/workflow.xml
@@ -0,0 +1,347 @@
+<workflow-app name="sub_dump_community_funder_results" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+
+        <property>
+            <name>sourcePath</name>
+            <description>the source path</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the output path</description>
+        </property>
+        <property>
+            <name>communityMapPath</name>
+            <description>the path to the community map</description>
+        </property>
+        <property>
+            <name>selectedResults</name>
+            <description>the path the the possible subset ot results to be dumped</description>
+        </property>
+        <property>
+            <name>hiveDbName</name>
+            <description>the target hive database name</description>
+        </property>
+        <property>
+            <name>hiveJdbcUrl</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hiveMetastoreUris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+
+        </configuration>
+    </global>
+
+    <start to="fork_dump"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+
+
+
+    <fork name="fork_dump">
+        <path start="dump_publication"/>
+        <path start="dump_dataset"/>
+        <path start="dump_orp"/>
+        <path start="dump_software"/>
+    </fork>
+
+    <action name="dump_publication">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table publication for community/funder related products</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkDumpCommunityProducts</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${selectedResults}/publication</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/dump/publication</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+            <arg>--dumpType</arg><arg>${dumpType}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_dataset">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table dataset for community/funder related products</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkDumpCommunityProducts</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${selectedResults}/dataset</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/dump/dataset</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_orp">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table ORP for community related products</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkDumpCommunityProducts</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${selectedResults}/otherresearchproduct</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/dump/otherresearchproduct</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_software">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table software for community related products</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkDumpCommunityProducts</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${selectedResults}/software</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/dump/software</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="join_dump" to="prepareResultProject"/>
+
+    <action name="prepareResultProject">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Prepare association result subset of project info</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkPrepareResultProject</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/preparedInfo</arg>
+        </spark>
+        <ok to="fork_extendWithProject"/>
+        <error to="Kill"/>
+    </action>
+
+    <fork name="fork_extendWithProject">
+        <path start="extend_publication"/>
+        <path start="extend_dataset"/>
+        <path start="extend_orp"/>
+        <path start="extend_software"/>
+    </fork>
+
+    <action name="extend_publication">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Extend dumped publications with information about project</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/dump/publication</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/ext/publication</arg>
+            <arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
+        </spark>
+        <ok to="join_extend"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="extend_dataset">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Extend dumped dataset with information about project</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/dump/dataset</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/ext/dataset</arg>
+            <arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
+        </spark>
+        <ok to="join_extend"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="extend_orp">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Extend dumped ORP with information about project</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/dump/otherresearchproduct</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/ext/orp</arg>
+            <arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
+        </spark>
+        <ok to="join_extend"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="extend_software">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Extend dumped software with information about project</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/dump/software</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/ext/software</arg>
+            <arg>--preparedInfoPath</arg><arg>${workingDir}/preparedInfo</arg>
+        </spark>
+        <ok to="join_extend"/>
+        <error to="Kill"/>
+    </action>
+    <join name="join_extend" to="End"/>
+
+    <end name="End"/>
+
+</workflow-app>
+
+
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/config-default.xml
new file mode 100644
index 0000000000..e5ec3d0aee
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/config-default.xml
@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hiveMetastoreUris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hiveJdbcUrl</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
+    </property>
+    <property>
+        <name>hiveDbName</name>
+        <value>openaire</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/import.txt b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/import.txt
new file mode 100644
index 0000000000..15387e988d
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/import.txt
@@ -0,0 +1,2 @@
+## This is a classpath-based import file (this header is required)
+dump_common classpath eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/workflow.xml
new file mode 100644
index 0000000000..319517026a
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/community/oozie_app/workflow.xml
@@ -0,0 +1,145 @@
+<workflow-app name="sub_dump_community_products" xmlns="uri:oozie:workflow:0.5">
+
+    <parameters>
+        <property>
+            <name>sourcePath</name>
+            <description>the source path</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the output path</description>
+        </property>
+        <property>
+            <name>hiveDbName</name>
+            <description>the target hive database name</description>
+        </property>
+        <property>
+            <name>hiveJdbcUrl</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hiveMetastoreUris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+
+        </configuration>
+    </global>
+
+    <start to="common_action_community_funder"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="common_action_community_funder">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/dump_common
+            </app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>sourcePath</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>selectedResults</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>communityMapPath</name>
+                    <value>${workingDir}/communityMap</value>
+                </property>
+                <property>
+                    <name>outputPath</name>
+                    <value>${workingDir}</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="splitForCommunities" />
+        <error to="Kill" />
+    </action>
+
+
+
+    <action name="splitForCommunities">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Split dumped result for community</name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.community.SparkSplitForCommunity</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/ext</arg>
+            <arg>--outputPath</arg><arg>${outputPath}</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+
+
+    <end name="End"/>
+
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/config-default.xml
new file mode 100644
index 0000000000..e5ec3d0aee
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/config-default.xml
@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hiveMetastoreUris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hiveJdbcUrl</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
+    </property>
+    <property>
+        <name>hiveDbName</name>
+        <value>openaire</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/workflow.xml
new file mode 100644
index 0000000000..f84ab7e1ad
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/complete/oozie_app/workflow.xml
@@ -0,0 +1,537 @@
+<workflow-app name="sub-dump_complete" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>sourcePath</name>
+            <description>the source path</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the output path</description>
+        </property>
+        <property>
+            <name>resultAggregation</name>
+            <description>true if all the result type have to be dumped under result. false otherwise</description>
+        </property>
+        <property>
+            <name>organizationCommunityMap</name>
+            <description>the organization community map</description>
+        </property>
+
+        <property>
+            <name>hiveDbName</name>
+            <description>the target hive database name</description>
+        </property>
+        <property>
+            <name>hiveJdbcUrl</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hiveMetastoreUris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+
+        </configuration>
+    </global>
+
+    <start to="fork_dump" />
+
+
+
+    <fork name="fork_dump">
+        <path start="dump_publication"/>
+        <path start="dump_dataset"/>
+        <path start="dump_orp"/>
+        <path start="dump_software"/>
+        <path start="dump_organization"/>
+        <path start="dump_project"/>
+        <path start="dump_datasource"/>
+        <path start="select_relation"/>
+    </fork>
+
+    <action name="dump_publication">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table publication </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/publication</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/publication</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_dataset">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table dataset </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/dataset</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/dataset</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_orp">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table ORP </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/otherresearchproduct</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/otherresearchproduct</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_software">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table software </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/software</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/software</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_organization">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table organization </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/organization</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Organization</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/organization</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_project">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table project </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/project</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Project</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/project</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_datasource">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table datasource </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpEntitiesJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/datasource</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Datasource</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/datasource</arg>
+            <arg>--communityMapPath</arg><arg>${workingDir}/communityMap</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="select_relation">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Select valid table relation </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkSelectValidRelationsJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/validrelation</arg>
+        </spark>
+        <ok to="dump_relation"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="dump_relation">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table relation </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkDumpRelationJob</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/validrelation</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/relation</arg>
+        </spark>
+        <ok to="join_dump"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="join_dump" to="fork_context"/>
+
+    <fork name="fork_context">
+        <path start="create_entities_fromcontext"/>
+        <path start="create_relation_fromcontext"/>
+        <path start="create_relation_fromorgs"/>
+    </fork>
+
+    <action name="create_entities_fromcontext">
+        <java>
+            <main-class>eu.dnetlib.dhp.oa.graph.dump.complete.CreateContextEntities</main-class>
+            <arg>--hdfsPath</arg><arg>${outputPath}/communities_infrastructures/communities_infrastructure.json.gz</arg>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
+        </java>
+        <ok to="join_context"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="create_relation_fromcontext">
+        <java>
+            <main-class>eu.dnetlib.dhp.oa.graph.dump.complete.CreateContextRelation</main-class>
+            <arg>--hdfsPath</arg><arg>${workingDir}/relation/context</arg>
+            <arg>--nameNode</arg><arg>${nameNode}</arg>
+            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
+        </java>
+        <ok to="join_context"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="create_relation_fromorgs">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table relation </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkOrganizationRelation</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/relation</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/contextOrg</arg>
+            <arg>--organizationCommunityMap</arg><arg>${organizationCommunityMap}</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_context"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="join_context" to="fork_extract_relations"/>
+
+    <fork name="fork_extract_relations">
+        <path start="rels_from_pubs"/>
+        <path start="rels_from_dats"/>
+        <path start="rels_from_orp"/>
+        <path start="rels_from_sw"/>
+    </fork>
+
+    <action name="rels_from_pubs">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Extract Relations from publication </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkExtractRelationFromEntities</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/publication</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/publication</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_extract_relations"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="rels_from_dats">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table dataset </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkExtractRelationFromEntities</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/dataset</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/dataset</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_extract_relations"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="rels_from_orp">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table ORP </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkExtractRelationFromEntities</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/otherresearchproduct</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/orp</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_extract_relations"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="rels_from_sw">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump table software </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkExtractRelationFromEntities</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/software</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/relation/software</arg>
+            <arg>--communityMapPath</arg><arg>${communityMapPath}</arg>
+        </spark>
+        <ok to="join_extract_relations"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="join_extract_relations" to="collect_and_save"/>
+
+    <action name="collect_and_save">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Collect Results and Relations and put them in the right path </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.complete.SparkCollectAndSave</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}</arg>
+            <arg>--outputPath</arg><arg>${outputPath}</arg>
+            <arg>--resultAggregation</arg><arg>${resultAggregation}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+
+
+    <kill name="Kill">
+        <message>Sub-workflow dump complete failed with error message ${wf:errorMessage()}
+        </message>
+    </kill>
+
+    <end name="End" />
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml
new file mode 100644
index 0000000000..e69de29bb2
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/import.txt b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/import.txt
new file mode 100644
index 0000000000..15387e988d
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/import.txt
@@ -0,0 +1,2 @@
+## This is a classpath-based import file (this header is required)
+dump_common classpath eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/commoncommunityfunder/oozie_app
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/workflow.xml
new file mode 100644
index 0000000000..b990f4e49b
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/workflow.xml
@@ -0,0 +1,256 @@
+<workflow-app name="sub_dump_funder_results" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+
+        <property>
+            <name>sourcePath</name>
+            <description>the source path</description>
+        </property>
+        <property>
+            <name>outputPath</name>
+            <description>the output path</description>
+        </property>
+        <property>
+            <name>hiveDbName</name>
+            <description>the target hive database name</description>
+        </property>
+        <property>
+            <name>hiveJdbcUrl</name>
+            <description>hive server jdbc url</description>
+        </property>
+        <property>
+            <name>hiveMetastoreUris</name>
+            <description>hive server metastore URIs</description>
+        </property>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+        <property>
+            <name>oozieActionShareLibForSpark2</name>
+            <description>oozie action sharelib for spark 2.*</description>
+        </property>
+        <property>
+            <name>spark2ExtraListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorAppListener</value>
+            <description>spark 2.* extra listeners classname</description>
+        </property>
+        <property>
+            <name>spark2SqlQueryExecutionListeners</name>
+            <value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
+            <description>spark 2.* sql query execution listeners classname</description>
+        </property>
+        <property>
+            <name>spark2YarnHistoryServerAddress</name>
+            <description>spark 2.* yarn history server address</description>
+        </property>
+        <property>
+            <name>spark2EventLogDir</name>
+            <description>spark 2.* event log dir location</description>
+        </property>
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>mapreduce.job.queuename</name>
+                <value>${queueName}</value>
+            </property>
+            <property>
+                <name>oozie.launcher.mapred.job.queue.name</name>
+                <value>${oozieLauncherQueueName}</value>
+            </property>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+
+        </configuration>
+    </global>
+
+    <start to="fork_result_linked_to_projects"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+
+    <fork name="fork_result_linked_to_projects">
+        <path start="select_publication_linked_to_projects"/>
+        <path start="select_dataset_linked_to_projects"/>
+        <path start="select_orp_linked_to_project"/>
+        <path start="select_software_linked_to_projects"/>
+    </fork>
+
+    <action name="select_publication_linked_to_projects">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump funder results </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkResultLinkedToProject</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/publication</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/publication</arg>
+            <arg>--graphPath</arg><arg>${sourcePath}</arg>
+        </spark>
+        <ok to="join_link"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="select_dataset_linked_to_projects">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump funder results </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkResultLinkedToProject</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/dataset</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/dataset</arg>
+            <arg>--graphPath</arg><arg>${sourcePath}</arg>
+        </spark>
+        <ok to="join_link"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="select_orp_linked_to_project">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump funder results </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkResultLinkedToProject</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/otherresearchproduct</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/otherresearchproduct</arg>
+            <arg>--graphPath</arg><arg>${sourcePath}</arg>
+        </spark>
+        <ok to="join_link"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="select_software_linked_to_projects">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump funder results </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkResultLinkedToProject</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${sourcePath}/software</arg>
+            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
+            <arg>--outputPath</arg><arg>${workingDir}/result/software</arg>
+            <arg>--graphPath</arg><arg>${sourcePath}</arg>
+        </spark>
+        <ok to="join_link"/>
+        <error to="Kill"/>
+    </action>
+
+    <join name="join_link" to="common_action_community_funder"/>
+
+    <action name="common_action_community_funder">
+        <sub-workflow>
+            <app-path>${wf:appPath()}/dump_common
+            </app-path>
+            <propagate-configuration/>
+            <configuration>
+                <property>
+                    <name>sourcePath</name>
+                    <value>${sourcePath}</value>
+                </property>
+                <property>
+                    <name>selectedResults</name>
+                    <value>${workingDir}/result</value>
+                </property>
+                <property>
+                    <name>communityMapPath</name>
+                    <value>${workingDir}/communityMap</value>
+                </property>
+                <property>
+                    <name>outputPath</name>
+                    <value>${workingDir}</value>
+                </property>
+            </configuration>
+        </sub-workflow>
+        <ok to="dump_funder_results" />
+        <error to="Kill" />
+    </action>
+
+    <action name="dump_funder_results">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Dump funder results </name>
+            <class>eu.dnetlib.dhp.oa.graph.dump.funderresults.SparkDumpFunderResults</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.warehouse.dir=${sparkSqlWarehouseDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${workingDir}/ext</arg>
+            <arg>--outputPath</arg><arg>${outputPath}</arg>
+            <arg>--graphPath</arg><arg>${sourcePath}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+
+    <end name="End"/>
+
+</workflow-app>
\ No newline at end of file

From eae10c58943a6c0d7797facb69531dc442ae5b30 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:07:25 +0200
Subject: [PATCH 037/106] modification to allow the dump for a single community

---
 .../oa/graph/dump/QueryInformationSystem.java | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index fe40369250..d1f295fcf6 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -17,7 +17,7 @@ public class QueryInformationSystem {
 
 	private ISLookUpService isLookUp;
 
-	private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
+	private static final String XQUERY_ALL = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
 		+
 		"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
 		" and ($x//context/param[./@name = 'status']/text() = 'all') "
@@ -28,9 +28,22 @@ public class QueryInformationSystem {
 		"{$x//CONFIGURATION/context/@label}" +
 		"</community>";
 
-	public CommunityMap getCommunityMap()
+	private static final String XQUERY_CI = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
+			+
+			"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
+			" and  $x//CONFIGURATION/context[./@id=%s]  "
+			+
+			"  return " +
+			"<community> " +
+			"{$x//CONFIGURATION/context/@id}" +
+			"{$x//CONFIGURATION/context/@label}" +
+			"</community>";
+
+	public CommunityMap getCommunityMap(boolean singleCommunity, String community_id)
 		throws ISLookUpException, DocumentException {
-		return getMap(isLookUp.quickSearchProfile(XQUERY));
+		if (singleCommunity)
+			return getMap(isLookUp.quickSearchProfile(XQUERY_CI.replace("%s", "'" + community_id + "'")));
+		return getMap(isLookUp.quickSearchProfile(XQUERY_ALL));
 
 	}
 

From 970b387b8dfa34592bbbf2f62c8ec1eae27d272e Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:08:10 +0200
Subject: [PATCH 038/106] modification to allow dump of a single community

---
 .../dhp/oa/graph/dump/SaveCommunityMap.java   | 21 ++++++++++++-------
 .../oa/graph/dump/input_cm_parameters.json    | 14 ++++++++++++-
 2 files changed, 26 insertions(+), 9 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
index 6ac626518c..7db19f7719 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
@@ -1,4 +1,3 @@
-
 package eu.dnetlib.dhp.oa.graph.dump;
 
 import java.io.BufferedWriter;
@@ -6,6 +5,7 @@ import java.io.IOException;
 import java.io.OutputStreamWriter;
 import java.io.Serializable;
 import java.nio.charset.StandardCharsets;
+import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.hadoop.conf.Configuration;
@@ -54,10 +54,10 @@ public class SaveCommunityMap implements Serializable {
 
 	public static void main(String[] args) throws Exception {
 		String jsonConfiguration = IOUtils
-			.toString(
-				SaveCommunityMap.class
-					.getResourceAsStream(
-						"/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json"));
+				.toString(
+						SaveCommunityMap.class
+								.getResourceAsStream(
+										"/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json"));
 
 		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
 		parser.parseArgument(args);
@@ -71,14 +71,19 @@ public class SaveCommunityMap implements Serializable {
 		final String isLookUpUrl = parser.get("isLookUpUrl");
 		log.info("isLookUpUrl: {}", isLookUpUrl);
 
+		final Boolean singleCommunity = Optional.ofNullable(parser.get("singleDeposition"))
+				.map(Boolean::valueOf).orElse(false);
+
+		final String community_id = Optional.ofNullable(parser.get("communityId")).orElse(null);
+
 		final SaveCommunityMap scm = new SaveCommunityMap(outputPath, nameNode, isLookUpUrl);
 
-		scm.saveCommunityMap();
+		scm.saveCommunityMap(singleCommunity, community_id);
 
 	}
 
-	private void saveCommunityMap() throws ISLookUpException, IOException, DocumentException {
-		writer.write(Utils.OBJECT_MAPPER.writeValueAsString(queryInformationSystem.getCommunityMap()));
+	private void saveCommunityMap(boolean singleCommunity, String community_id) throws ISLookUpException, IOException, DocumentException {
+		writer.write(Utils.OBJECT_MAPPER.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
 		writer.close();
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
index 6e42bfa643..8062205101 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
@@ -18,7 +18,19 @@
 		"paramLongName": "outputPath",
 		"paramDescription": "the path used to store temporary output files",
 		"paramRequired": true
-	}
+	},
+	{
+		"paramName": "sd",
+		"paramLongName": "singleDeposition",
+		"paramDescription": "true if the dump should be created for a single community",
+		"paramRequired": true
+	},
+	{
+		"paramName": "ci",
+		"paramLongName": "communityId",
+		"paramDescription": "the id of the community for which to create the dump",
+		"paramRequired": true
+	}		}
 ]
 
 

From 52ce35d57b7c3e4b28996f2147182cf93099f969 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:08:46 +0200
Subject: [PATCH 039/106] -

---
 .../eu/dnetlib/dhp/oa/graph/dump/input_parameters.json     | 7 ++++++-
 .../eu/dnetlib/dhp/oa/graph/dump/split_parameters.json     | 7 ++++++-
 .../eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json        | 7 +------
 3 files changed, 13 insertions(+), 8 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json
index 1d986fc261..e86f6e3d25 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters.json
@@ -35,7 +35,12 @@
 		"paramLongName":"dumpType",
 		"paramDescription": "the type of the dump (complete for the whole graph, community for the products related to communities, funder for the results with at least a link to project",
 		"paramRequired": false
-	}
+	},	{
+	"paramName":"cid",
+	"paramLongName":"communityId",
+	"paramDescription": "the id of the community to be dumped",
+	"paramRequired": false
+}
 ]
 
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/split_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/split_parameters.json
index 29812188a5..dec82bc973 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/split_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/split_parameters.json
@@ -25,7 +25,12 @@
 		"paramLongName": "isSparkSessionManaged",
 		"paramDescription": "true if the spark session is managed, false otherwise",
 		"paramRequired": false
-	}
+	},	{
+	"paramName":"cid",
+	"paramLongName":"communityId",
+	"paramDescription": "the id of the community to be dumped",
+	"paramRequired": false
+}
 ]
 
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json
index 683b6f4b73..b02062ede7 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/upload_zenodo.json
@@ -12,12 +12,7 @@
     "paramDescription": "The id of the concept record for a new version",
     "paramRequired": false
   },
-  {
-    "paramName":"cmp",
-    "paramLongName":"communityMapPath",
-    "paramDescription": "the path to the serialization of the community map",
-    "paramRequired": false
-  },
+
   {
     "paramName":"di",
     "paramLongName":"depositionId",

From 320cf02d967f86aa7f2971d5bb81aef714621d13 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:13:32 +0200
Subject: [PATCH 040/106] Changed the way to find results linked to projects.
 We verify to actually have the project on the graph before selecting the
 result

---
 .../SparkResultLinkedToProject.java           | 35 +++++++++----------
 1 file changed, 17 insertions(+), 18 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
index 1a28a21f43..9c4c73d851 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
@@ -24,7 +24,8 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.oaf.Relation;
 import eu.dnetlib.dhp.schema.oaf.Result;
 import scala.Tuple2;
-
+import org.apache.spark.sql.*;
+import eu.dnetlib.dhp.schema.oaf.Project;
 /**
  * Selects the results linked to projects. Only for these results the dump will be performed.
  * The code to perform the dump and to expend the dumped results with the informaiton related to projects
@@ -59,8 +60,8 @@ public class SparkResultLinkedToProject implements Serializable {
 		final String resultClassName = parser.get("resultTableName");
 		log.info("resultTableName: {}", resultClassName);
 
-		final String relationPath = parser.get("relationPath");
-		log.info("relationPath: {}", relationPath);
+		final String graphPath = parser.get("graphPath");
+		log.info("graphPath: {}", graphPath);
 
 		Class<? extends Result> inputClazz = (Class<? extends Result>) Class.forName(resultClassName);
 		SparkConf conf = new SparkConf();
@@ -70,34 +71,32 @@ public class SparkResultLinkedToProject implements Serializable {
 			isSparkSessionManaged,
 			spark -> {
 				Utils.removeOutputDir(spark, outputPath);
-				writeResultsLinkedToProjects(spark, inputClazz, inputPath, outputPath, relationPath);
+				writeResultsLinkedToProjects(spark, inputClazz, inputPath, outputPath, graphPath);
 			});
 	}
 
 	private static <R extends Result> void writeResultsLinkedToProjects(SparkSession spark, Class<R> inputClazz,
-		String inputPath, String outputPath, String relationPath) {
+		String inputPath, String outputPath, String graphPath) {
 
 		Dataset<R> results = Utils
 			.readPath(spark, inputPath, inputClazz)
 			.filter("dataInfo.deletedbyinference = false and datainfo.invisible = false");
 		Dataset<Relation> relations = Utils
-			.readPath(spark, relationPath, Relation.class)
+			.readPath(spark, graphPath + "/relation", Relation.class)
 			.filter(
 				"dataInfo.deletedbyinference = false and lower(relClass) = '"
 					+ ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
 
-		relations
-			.joinWith(
-				results, relations.col("source").equalTo(results.col("id")),
-				"inner")
-			.groupByKey(
-				(MapFunction<Tuple2<Relation, R>, String>) value -> value
-					._2()
-					.getId(),
-				Encoders.STRING())
-			.mapGroups((MapGroupsFunction<String, Tuple2<Relation, R>, R>) (k, it) -> {
-				return it.next()._2();
-			}, Encoders.bean(inputClazz))
+		spark
+				.sql(
+						"Select res.* " +
+								"from relation rel " +
+								"join result res " +
+								"on rel.source = res.id " +
+								"join project p " +
+								"on rel.target = p.id " +
+								"")
+				.as(Encoders.bean(inputClazz))
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")

From 886617afd0243075836815cb6cef59e9e2c096ae Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:15:35 +0200
Subject: [PATCH 041/106] One result linked to more than on project is saved
 just once

---
 .../graph/dump/funderresults/SparkResultLinkedToProject.java | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
index 9c4c73d851..e0355d6d61 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
@@ -97,6 +97,11 @@ public class SparkResultLinkedToProject implements Serializable {
 								"on rel.target = p.id " +
 								"")
 				.as(Encoders.bean(inputClazz))
+		.groupByKey(
+				(MapFunction< R, String>) value -> value
+						.getId(),
+				Encoders.STRING())
+				.mapGroups((MapGroupsFunction<String, R, R>) (k, it) -> it.next(), Encoders.bean(inputClazz))
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")

From 774cdb190e498da204f162d1497f27dd68fb880a Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 13 Jul 2021 18:57:24 +0200
Subject: [PATCH 042/106] changes to mirror the last dump of the graph with the
 ols data model.

---
 .../dnetlib/doiboost/mag/MAGMappingTest.scala | 24 +++++--
 .../dhp/oa/graph/dump/DumpProducts.java       |  3 +-
 .../dhp/oa/graph/dump/SendToZenodoHDFS.java   | 12 ++--
 .../graph/dump/community/CommunitySplit.java  | 10 +--
 .../funderresults/SparkDumpFunderResults.java | 17 +++--
 .../dump/complete/schema/result_schema.json   | 70 ++++++++++++++++++-
 .../dump/QueryInformationSystemTest.java      |  2 +-
 .../dump/complete/CreateRelationTest.java     |  2 +-
 .../dump/funderresult/SplitPerFunderTest.java |  4 +-
 9 files changed, 113 insertions(+), 31 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
index 7eb50665e2..d43e7ed378 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
@@ -70,9 +70,15 @@ class MAGMappingTest {
 
     implicit val formats = DefaultFormats
 
-    val conf = new SparkConf().setAppName("test").setMaster("local[2]")
-    val sc = new SparkContext(conf)
-    val spark = SparkSession.builder.config(sc.getConf).getOrCreate()
+
+    val conf = new SparkConf().setAppName("test").setMaster("local[*]").set("spark.driver.host", "localhost")
+
+    val spark: SparkSession =
+      SparkSession
+        .builder()
+        .appName(getClass.getSimpleName)
+        .config(conf)
+        .getOrCreate()
     val path = getClass.getResource("magPapers.json").getPath
 
     import org.apache.spark.sql.Encoders
@@ -95,9 +101,15 @@ class MAGMappingTest {
 
     implicit val formats = DefaultFormats
 
-    val conf = new SparkConf().setAppName("test").setMaster("local[2]")
-    val sc = new SparkContext(conf)
-    val spark = SparkSession.builder.config(sc.getConf).getOrCreate()
+
+    val conf = new SparkConf().setAppName("test").setMaster("local[*]").set("spark.driver.host", "localhost")
+
+        val spark: SparkSession =
+          SparkSession
+            .builder()
+            .appName(getClass.getSimpleName)
+            .config(conf)
+            .getOrCreate()
     val path = getClass.getResource("duplicatedMagPapers.json").getPath
 
     import org.apache.spark.sql.Encoders
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
index f5b8f1c768..4ddcea9e8f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
@@ -37,7 +37,8 @@ public class DumpProducts implements Serializable {
 			isSparkSessionManaged,
 			spark -> {
 				Utils.removeOutputDir(spark, outputPath);
-				execDump(spark, inputPath, outputPath, communityMapPath, inputClazz, outputClazz, dumpType);
+                execDump(
+                        spark, inputPath, outputPath, communityMapPath, inputClazz, outputClazz, dumpType);
 			});
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
index fd8262544c..28881b253a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
@@ -48,14 +48,14 @@ public class SendToZenodoHDFS implements Serializable {
 			.orElse(false);
 
 		final String depositionId = Optional.ofNullable(parser.get("depositionId")).orElse(null);
-		final String communityMapPath = parser.get("communityMapPath");
+		//final String communityMapPath = parser.get("communityMapPath");
 
 		Configuration conf = new Configuration();
 		conf.set("fs.defaultFS", hdfsNameNode);
 
 		FileSystem fileSystem = FileSystem.get(conf);
 
-		CommunityMap communityMap = Utils.readCommunityMap(fileSystem, communityMapPath);
+		//CommunityMap communityMap = Utils.readCommunityMap(fileSystem, communityMapPath);
 
 		RemoteIterator<LocatedFileStatus> fileStatusListIterator = fileSystem
 			.listFiles(
@@ -87,10 +87,10 @@ public class SendToZenodoHDFS implements Serializable {
 			if (!p_string.endsWith("_SUCCESS")) {
 				// String tmp = p_string.substring(0, p_string.lastIndexOf("/"));
 				String name = p_string.substring(p_string.lastIndexOf("/") + 1);
-				log.info("Sending information for community: " + name);
-				if (communityMap.containsKey(name.substring(0, name.lastIndexOf(".")))) {
-					name = communityMap.get(name.substring(0, name.lastIndexOf("."))).replace(" ", "_") + ".tar";
-				}
+//				log.info("Sending information for community: " + name);
+//				if (communityMap.containsKey(name.substring(0, name.lastIndexOf(".")))) {
+//					name = communityMap.get(name.substring(0, name.lastIndexOf("."))).replace(" ", "_") + ".tar";
+//				}
 
 				FSDataInputStream inputStream = fileSystem.open(p);
 				zenodoApiClient.uploadIS(inputStream, name, fileStatus.getLen());
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index ec16a65e0d..d64c265034 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -34,12 +34,13 @@ public class CommunitySplit implements Serializable {
 			isSparkSessionManaged,
 			spark -> {
 				Utils.removeOutputDir(spark, outputPath);
-				execSplit(spark, inputPath, outputPath, Utils.getCommunityMap(spark, communityMapPath).keySet());
+				CommunityMap communityMap = Utils.getCommunityMap(spark, communityMapPath);
+				execSplit(spark, inputPath, outputPath, communityMap);
 			});
 	}
 
 	private static void execSplit(SparkSession spark, String inputPath, String outputPath,
-		Set<String> communities) {
+		CommunityMap communities) {
 
 		Dataset<CommunityResult> result = Utils
 			.readPath(spark, inputPath + "/publication", CommunityResult.class)
@@ -48,8 +49,9 @@ public class CommunitySplit implements Serializable {
 			.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
 
 		communities
+				.keySet()
 			.stream()
-			.forEach(c -> printResult(c, result, outputPath));
+			.forEach(c -> printResult(c, result, outputPath + "/" + communities.get(c).replace(" ", "_")));
 
 	}
 
@@ -61,7 +63,7 @@ public class CommunitySplit implements Serializable {
 			.write()
 			.option("compression", "gzip")
 			.mode(SaveMode.Overwrite)
-			.json(outputPath + "/" + c);
+			.json(outputPath);
 
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index b124b76ce0..9fcdcaf78d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -103,12 +103,13 @@ public class SparkDumpFunderResults implements Serializable {
 			} else {
 				funderdump = fundernsp.substring(0, fundernsp.indexOf("_")).toUpperCase();
 			}
-			writeFunderResult(funder, result, outputPath ,  funderdump);
+			writeFunderResult(funder, result, outputPath, funderdump);
 		});
 
 	}
 
-	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath, String funderName) {
+	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath,
+		String funderName) {
 
 		results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
 			if (!Optional.ofNullable(r.getProjects()).isPresent()) {
@@ -128,24 +129,22 @@ public class SparkDumpFunderResults implements Serializable {
 			}
 			return null;
 		}, Encoders.bean(CommunityResult.class))
-			.filter((FilterFunction<CommunityResult>) r -> r!= null)
+			.filter((FilterFunction<CommunityResult>) r -> r != null)
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
 			.json(outputPath + "/" + funderName);
 	}
 
-
 	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath,
-										  String funderDump) {
+		String funderDump) {
 
 		if (funder.startsWith("40|irb")) {
-			dumpResults(funder, results, outputPath,  "HRZZ");
-			dumpResults(funder, results, outputPath,  "MZOS");
+			dumpResults(funder, results, outputPath, "HRZZ");
+			dumpResults(funder, results, outputPath, "MZOS");
 		} else
-			dumpResults(funder, results, outputPath,  funderDump);
+			dumpResults(funder, results, outputPath, funderDump);
 
 	}
 
-
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/complete/schema/result_schema.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/complete/schema/result_schema.json
index 867fd5a779..03cbfb0744 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/complete/schema/result_schema.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/complete/schema/result_schema.json
@@ -1,6 +1,23 @@
 {
   "$schema": "http://json-schema.org/draft-07/schema#",
   "definitions": {
+    "AccessRight":{
+      "type":"object",
+      "properties":{
+        "code": {
+          "type": "string",
+          "description": "COAR access mode code: http://vocabularies.coar-repositories.org/documentation/access_rights/"
+        },
+        "label": {
+          "type": "string",
+          "description": "Label for the access mode"
+        },
+        "scheme": {
+          "type": "string",
+          "description": "Scheme of reference for access right code. Always set to COAR access rights vocabulary: http://vocabularies.coar-repositories.org/documentation/access_rights/"
+        }
+      }
+    },
     "ControlledField": {
       "type": "object",
       "properties": {
@@ -266,6 +283,57 @@
         ]
       }
     },
+    "instance":{
+      "type":"array",
+      "items":{
+        "type":"object",
+        "properties":{
+          "accessright":{
+            "allOf":[
+              {
+                "$ref":"#/definitions/AccessRight"
+              },
+              {
+                "description":"The accessright of this materialization of the result"
+              }
+            ]
+          },
+          "articleprocessingcharge":{
+            "type":"object",
+            "properties":{
+              "amount":{
+                "type":"string"
+              },
+              "currency":{
+                "type":"string"
+              }
+            }
+          },
+          "license":{
+            "type":"string"
+          },
+          "publicationdate":{
+            "type":"string"
+          },
+          "refereed":{
+            "type":"string"
+          },
+          "type":{
+            "type":"string",
+            "description":"The specific sub-type of this materialization of the result (see https://api.openaire.eu/vocabularies/dnet:result_typologies following the links)"
+          },
+          "url":{
+            "description":"Description of url",
+            "type":"array",
+            "items":{
+              "type":"string",
+              "description":"urls where it is possible to access the materialization of the result"
+            }
+          }
+        },
+        "description":"One of the materialization for this result"
+      }
+    },
     "programmingLanguage": {
       "type": "string",
       "description": "Only for results with type 'software': the programming language"
@@ -302,7 +370,7 @@
           "subject": {
             "allOf": [
               {"$ref": "#/definitions/ControlledField"},
-              {"description": "OpenAIRE subject classification scheme (https://api.openaire.eu/vocabularies/dnet:subject_classification_typologies) and value. When the scheme is 'keyword', it means that the subject is free-text (i.e. not a term from a controlled vocabulary)."},
+              {"description": "OpenAIRE subject classification scheme (https://api.openaire.eu/vocabularies/dnet:subject_classification_typologies) and value. When the scheme is 'keyword', it means that the subject is free-text (i.e. not a term from a controlled vocabulary)."}
             ]
           }
         }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
index c6666342a0..499df3a097 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
@@ -70,7 +70,7 @@ public class QueryInformationSystemTest {
 		lenient().when(isLookUpService.quickSearchProfile(XQUERY)).thenReturn(communityMap);
 		queryInformationSystem = new QueryInformationSystem();
 		queryInformationSystem.setIsLookUp(isLookUpService);
-		map = queryInformationSystem.getCommunityMap();
+		map = queryInformationSystem.getCommunityMap(false, null);
 	}
 
 	@Test
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
index 5f21e0bc5a..448034d0cf 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
@@ -379,7 +379,7 @@ public class CreateRelationTest {
 				"            <param name=\"rule\"/>\n" +
 				"            <param name=\"CD_PROJECT_NUMBER\">675858</param>\n" +
 				"            <param name=\"url\"/>\n" +
-				"            <param name=\"funding\">H2020-EINFRA-2015-1</param>\n" +
+				"            <param name=\"funding\">EC | H2020 | RIA</param>\n" +
 				"            <param name=\"funder\">EC</param>\n" +
 				"            <param name=\"acronym\">West-Life</param>\n" +
 				"        </concept>\n" +
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
index eefb0b9cbe..26187f0a32 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
@@ -139,8 +139,8 @@ public class SplitPerFunderTest {
 
 		// MZOS 1
 		tmp = sc
-				.textFile(workingDir.toString() + "/split/MZOS")
-				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+			.textFile(workingDir.toString() + "/split/MZOS")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 		Assertions.assertEquals(1, tmp.count());
 
 	}

From 4cb65bc64af4d4cf0b76ea3cc6ca9e67d200af83 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 14 Jul 2021 09:44:32 +0200
Subject: [PATCH 043/106] fixed process doiboost workflow: - splitted
 OrcidToOAF into two phase preprocess and process - updated workflow used in
 production

---
 .../crossref/SparkMapDumpIntoOAF.scala        |  2 +-
 .../orcid/SparkConvertORCIDToOAF.scala        | 56 +++------------
 .../doiboost/orcid/SparkPreprocessORCID.scala | 70 +++++++++++++++++++
 .../doiboost/uw/SparkMapUnpayWallToOAF.scala  |  2 +-
 .../convert_crossref_dump_to_oaf_params.json  |  6 ++
 .../doiboost/convert_orcid_to_oaf_params.json |  6 ++
 .../doiboost/convert_uw_to_oaf_params.json    |  6 ++
 .../dhp/doiboost/oozie_app/workflow.xml       |  2 +-
 .../doiboost/orcid_oaf/oozie_app/workflow.xml |  2 +-
 ...rams.json => preprocess_orcid_params.json} |  3 +-
 .../orcid/MappingORCIDToOAFTest.scala         |  2 +-
 11 files changed, 103 insertions(+), 54 deletions(-)
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_crossref_dump_to_oaf_params.json
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_uw_to_oaf_params.json
 rename dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/{convert_map_to_oaf_params.json => preprocess_orcid_params.json} (59%)

diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala
index 57acaf404d..c65916610c 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/crossref/SparkMapDumpIntoOAF.scala
@@ -21,7 +21,7 @@ object SparkMapDumpIntoOAF {
 
     val logger: Logger = LoggerFactory.getLogger(SparkMapDumpIntoOAF.getClass)
     val conf: SparkConf = new SparkConf()
-    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkMapDumpIntoOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json")))
+    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkMapDumpIntoOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_crossref_dump_to_oaf_params.json")))
     parser.parseArgument(args)
     val spark: SparkSession =
       SparkSession
diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
index a359eb3c6e..9117bcb347 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
@@ -1,61 +1,18 @@
 package eu.dnetlib.doiboost.orcid
 
-import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper}
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetlib.dhp.oa.merge.AuthorMerger
 import eu.dnetlib.dhp.schema.oaf.Publication
-import eu.dnetlib.dhp.schema.orcid.OrcidDOI
 import org.apache.commons.io.IOUtils
 import org.apache.spark.SparkConf
-import org.apache.spark.rdd.RDD
-import org.apache.spark.sql.functions._
-import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession}
+import org.apache.spark.sql._
 import org.slf4j.{Logger, LoggerFactory}
 
 object SparkConvertORCIDToOAF {
   val logger: Logger = LoggerFactory.getLogger(SparkConvertORCIDToOAF.getClass)
 
-    def fixORCIDItem(item :ORCIDItem):ORCIDItem = {
-      new ORCIDItem(item.doi, item.authors.groupBy(_.oid).map(_._2.head).toList)
-
-  }
-
-
-  def run(spark:SparkSession,sourcePath:String,workingPath:String, targetPath:String):Unit = {
-    import spark.implicits._
-    implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
-
-    val inputRDD:RDD[OrcidAuthor]  = spark.sparkContext.textFile(s"$sourcePath/authors").map(s => ORCIDToOAF.convertORCIDAuthor(s)).filter(s => s!= null).filter(s => ORCIDToOAF.authorValid(s))
-
-    spark.createDataset(inputRDD).as[OrcidAuthor].write.mode(SaveMode.Overwrite).save(s"$workingPath/author")
-
-    val res = spark.sparkContext.textFile(s"$sourcePath/works").flatMap(s => ORCIDToOAF.extractDOIWorks(s)).filter(s => s!= null)
-
-    spark.createDataset(res).as[OrcidWork].write.mode(SaveMode.Overwrite).save(s"$workingPath/works")
-
-    val authors :Dataset[OrcidAuthor] = spark.read.load(s"$workingPath/author").as[OrcidAuthor]
-
-    val works :Dataset[OrcidWork] = spark.read.load(s"$workingPath/works").as[OrcidWork]
-
-    works.joinWith(authors, authors("oid").equalTo(works("oid")))
-      .map(i =>{
-      val doi = i._1.doi
-      var author = i._2
-      (doi, author)
-    }).groupBy(col("_1").alias("doi"))
-      .agg(collect_list(col("_2")).alias("authors")).as[ORCIDItem]
-      .map(s => fixORCIDItem(s))
-      .write.mode(SaveMode.Overwrite).save(s"$workingPath/orcidworksWithAuthor")
-
-    val dataset: Dataset[ORCIDItem] =spark.read.load(s"$workingPath/orcidworksWithAuthor").as[ORCIDItem]
-
-    logger.info("Converting ORCID to OAF")
-    dataset.map(o => ORCIDToOAF.convertTOOAF(o)).write.mode(SaveMode.Overwrite).save(targetPath)
-  }
-
   def main(args: Array[String]): Unit = {
     val conf: SparkConf = new SparkConf()
-    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json")))
+    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json")))
     parser.parseArgument(args)
     val spark: SparkSession =
       SparkSession
@@ -64,11 +21,16 @@ object SparkConvertORCIDToOAF {
         .appName(getClass.getSimpleName)
         .master(parser.get("master")).getOrCreate()
 
+    implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
+    import spark.implicits._
 
-    val sourcePath = parser.get("sourcePath")
     val workingPath = parser.get("workingPath")
     val targetPath = parser.get("targetPath")
-    run(spark, sourcePath, workingPath, targetPath)
+
+    val dataset: Dataset[ORCIDItem] =spark.read.load(s"$workingPath/orcidworksWithAuthor").as[ORCIDItem]
+
+    logger.info("Converting ORCID to OAF")
+    dataset.map(o => ORCIDToOAF.convertTOOAF(o)).write.mode(SaveMode.Overwrite).save(targetPath)
 
   }
 
diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
new file mode 100644
index 0000000000..d6911cfa78
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
@@ -0,0 +1,70 @@
+package eu.dnetlib.doiboost.orcid
+
+import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper}
+import eu.dnetlib.dhp.application.ArgumentApplicationParser
+import eu.dnetlib.dhp.oa.merge.AuthorMerger
+import eu.dnetlib.dhp.schema.oaf.Publication
+import eu.dnetlib.dhp.schema.orcid.OrcidDOI
+import org.apache.commons.io.IOUtils
+import org.apache.spark.SparkConf
+import org.apache.spark.rdd.RDD
+import org.apache.spark.sql.functions._
+import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession}
+import org.slf4j.{Logger, LoggerFactory}
+
+object SparkPreprocessORCID {
+  val logger: Logger = LoggerFactory.getLogger(SparkConvertORCIDToOAF.getClass)
+
+    def fixORCIDItem(item :ORCIDItem):ORCIDItem = {
+      ORCIDItem(item.doi, item.authors.groupBy(_.oid).map(_._2.head).toList)
+
+  }
+
+
+  def run(spark:SparkSession,sourcePath:String,workingPath:String):Unit = {
+    import spark.implicits._
+    implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
+
+    val inputRDD:RDD[OrcidAuthor]  = spark.sparkContext.textFile(s"$sourcePath/authors").map(s => ORCIDToOAF.convertORCIDAuthor(s)).filter(s => s!= null).filter(s => ORCIDToOAF.authorValid(s))
+
+    spark.createDataset(inputRDD).as[OrcidAuthor].write.mode(SaveMode.Overwrite).save(s"$workingPath/author")
+
+    val res = spark.sparkContext.textFile(s"$sourcePath/works").flatMap(s => ORCIDToOAF.extractDOIWorks(s)).filter(s => s!= null)
+
+    spark.createDataset(res).as[OrcidWork].write.mode(SaveMode.Overwrite).save(s"$workingPath/works")
+
+    val authors :Dataset[OrcidAuthor] = spark.read.load(s"$workingPath/author").as[OrcidAuthor]
+
+    val works :Dataset[OrcidWork] = spark.read.load(s"$workingPath/works").as[OrcidWork]
+
+    works.joinWith(authors, authors("oid").equalTo(works("oid")))
+      .map(i =>{
+        val doi = i._1.doi
+        val author = i._2
+      (doi, author)
+    }).groupBy(col("_1").alias("doi"))
+      .agg(collect_list(col("_2")).alias("authors")).as[ORCIDItem]
+      .map(s => fixORCIDItem(s))
+      .write.mode(SaveMode.Overwrite).save(s"$workingPath/orcidworksWithAuthor")
+  }
+
+  def main(args: Array[String]): Unit = {
+    val conf: SparkConf = new SparkConf()
+    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json")))
+    parser.parseArgument(args)
+    val spark: SparkSession =
+      SparkSession
+        .builder()
+        .config(conf)
+        .appName(getClass.getSimpleName)
+        .master(parser.get("master")).getOrCreate()
+
+
+    val sourcePath = parser.get("sourcePath")
+    val workingPath = parser.get("workingPath")
+
+    run(spark, sourcePath, workingPath)
+
+  }
+
+}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/uw/SparkMapUnpayWallToOAF.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/uw/SparkMapUnpayWallToOAF.scala
index a72e4b0d6e..4530926f10 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/uw/SparkMapUnpayWallToOAF.scala
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/uw/SparkMapUnpayWallToOAF.scala
@@ -18,7 +18,7 @@ object SparkMapUnpayWallToOAF {
 
     val logger: Logger = LoggerFactory.getLogger(SparkMapDumpIntoOAF.getClass)
     val conf: SparkConf = new SparkConf()
-    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkMapDumpIntoOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json")))
+    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkMapDumpIntoOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_uw_to_oaf_params.json")))
     parser.parseArgument(args)
     val spark: SparkSession =
       SparkSession
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_crossref_dump_to_oaf_params.json b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_crossref_dump_to_oaf_params.json
new file mode 100644
index 0000000000..da324f8c45
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_crossref_dump_to_oaf_params.json
@@ -0,0 +1,6 @@
+[
+  {"paramName":"t",   "paramLongName":"targetPath", "paramDescription": "the path of the OAF Orcid transformed",  "paramRequired": true},
+  {"paramName":"s",   "paramLongName":"sourcePath", "paramDescription": "the source path ",  "paramRequired": false},
+  {"paramName":"m",   "paramLongName":"master",     "paramDescription": "the master name",  "paramRequired": true}
+
+]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json
new file mode 100644
index 0000000000..6c9ca5ede1
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json
@@ -0,0 +1,6 @@
+[
+  {"paramName":"t",   "paramLongName":"targetPath", "paramDescription": "the path of the OAF Orcid transformed",  "paramRequired": true},
+  {"paramName":"w",   "paramLongName":"workingPath", "paramDescription": "the working path ",  "paramRequired": false},
+  {"paramName":"m",   "paramLongName":"master",     "paramDescription": "the master name",  "paramRequired": true}
+
+]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_uw_to_oaf_params.json b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_uw_to_oaf_params.json
new file mode 100644
index 0000000000..da324f8c45
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_uw_to_oaf_params.json
@@ -0,0 +1,6 @@
+[
+  {"paramName":"t",   "paramLongName":"targetPath", "paramDescription": "the path of the OAF Orcid transformed",  "paramRequired": true},
+  {"paramName":"s",   "paramLongName":"sourcePath", "paramDescription": "the source path ",  "paramRequired": false},
+  {"paramName":"m",   "paramLongName":"master",     "paramDescription": "the master name",  "paramRequired": true}
+
+]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
index fa47e142d0..34b4b5c5e3 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
@@ -368,7 +368,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>Convert ORCID to Dataset</name>
-            <class>eu.dnetlib.doiboost.orcid.SparkConvertORCIDToOAF</class>
+            <class>eu.dnetlib.doiboost.orcid.SparkPreprocessORCID</class>
             <jar>dhp-doiboost-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_oaf/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_oaf/oozie_app/workflow.xml
index bffde793ba..0670e18de4 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_oaf/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcid_oaf/oozie_app/workflow.xml
@@ -34,7 +34,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>Convert ORCID to Dataset</name>
-            <class>eu.dnetlib.doiboost.orcid.SparkConvertORCIDToOAF</class>
+            <class>eu.dnetlib.doiboost.orcid.SparkPreprocessORCID</class>
             <jar>dhp-doiboost-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess_orcid_params.json
similarity index 59%
rename from dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json
rename to dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess_orcid_params.json
index 1521035705..fdc1e2f20e 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/convert_map_to_oaf_params.json
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess_orcid_params.json
@@ -1,7 +1,6 @@
 [
   {"paramName":"s",   "paramLongName":"sourcePath", "paramDescription": "the path of the Orcid Input file",  "paramRequired": true},
   {"paramName":"w",   "paramLongName":"workingPath", "paramDescription": "the working path ",  "paramRequired": false},
-  {"paramName":"t",   "paramLongName":"targetPath", "paramDescription": "the working dir path",                      "paramRequired": true},
-  {"paramName":"m",   "paramLongName":"master",     "paramDescription": "the master name",                          "paramRequired": true}
+  {"paramName":"m",   "paramLongName":"master",     "paramDescription": "the master name",  "paramRequired": true}
 
 ]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
index d620c4ef3d..5fced8edb6 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
@@ -46,7 +46,7 @@ class MappingORCIDToOAFTest {
     implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
     import spark.implicits._
 
-    SparkConvertORCIDToOAF.run( spark,sourcePath, workingPath, targetPath)
+    SparkPreprocessORCID.run( spark,sourcePath, workingPath)
 
     val mapper = new ObjectMapper()
 

From 1cdd09cd8ed069c2d2dc2d5856faf154c15a3558 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Wed, 14 Jul 2021 11:14:59 +0200
Subject: [PATCH 044/106] Tentative fix for testing of Jenkins

---
 .../dnetlib/doiboost/mag/MAGMappingTest.scala | 24 ++++++++++++++-----
 1 file changed, 18 insertions(+), 6 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
index 7eb50665e2..dbdedcbd06 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
@@ -70,9 +70,15 @@ class MAGMappingTest {
 
     implicit val formats = DefaultFormats
 
-    val conf = new SparkConf().setAppName("test").setMaster("local[2]")
-    val sc = new SparkContext(conf)
-    val spark = SparkSession.builder.config(sc.getConf).getOrCreate()
+    val conf = new SparkConf()
+    conf.setMaster("local[*]")
+    conf.set("spark.driver.host", "localhost")
+    val spark: SparkSession =
+      SparkSession
+        .builder()
+        .appName(getClass.getSimpleName)
+        .config(conf)
+        .getOrCreate()
     val path = getClass.getResource("magPapers.json").getPath
 
     import org.apache.spark.sql.Encoders
@@ -95,9 +101,15 @@ class MAGMappingTest {
 
     implicit val formats = DefaultFormats
 
-    val conf = new SparkConf().setAppName("test").setMaster("local[2]")
-    val sc = new SparkContext(conf)
-    val spark = SparkSession.builder.config(sc.getConf).getOrCreate()
+    val conf = new SparkConf()
+    conf.setMaster("local[*]")
+    conf.set("spark.driver.host", "localhost")
+    val spark: SparkSession =
+      SparkSession
+        .builder()
+        .appName(getClass.getSimpleName)
+        .config(conf)
+        .getOrCreate()
     val path = getClass.getResource("duplicatedMagPapers.json").getPath
 
     import org.apache.spark.sql.Encoders

From 10068c00ea1dc757262b4bbe2307fcb1b0e3fd30 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 14 Jul 2021 14:37:06 +0200
Subject: [PATCH 045/106] Code refactor:  - removed old workflows in doiboost 
 - splitted workflow of doiboost in preprocess and process

---
 .../orcid/SparkConvertORCIDToOAF.scala        |  17 +-
 .../doiboost/orcid/SparkPreprocessORCID.scala |   2 +-
 .../doiboost/crossref/oozie_app/workflow.xml  | 101 ----
 .../intersection/oozie_app/config-default.xml |  38 --
 .../intersection/oozie_app/workflow.xml       |  96 ----
 .../doiboost/mag/oozie_app/config-default.xml |  42 --
 .../dhp/doiboost/mag/oozie_app/workflow.xml   |  92 ----
 .../dhp/doiboost/oozie_app/config-default.xml |  42 --
 .../dhp/doiboost/oozie_app/workflow.xml       | 453 ------------------
 .../oozie_app/config-default.xml              |   0
 .../preprocess/oozie_app/workflow.xml         | 216 +++++++++
 .../unpaywall/oozie_app/config-default.xml    |  38 --
 .../doiboost/unpaywall/oozie_app/workflow.xml |  55 ---
 .../dnetlib/doiboost/mag/MAGMappingTest.scala |  25 +-
 .../orcid/MappingORCIDToOAFTest.scala         |   4 +
 15 files changed, 240 insertions(+), 981 deletions(-)
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
 rename dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/{crossref => preprocess}/oozie_app/config-default.xml (100%)
 create mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
index 9117bcb347..fa4a93e008 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala
@@ -10,6 +10,16 @@ import org.slf4j.{Logger, LoggerFactory}
 object SparkConvertORCIDToOAF {
   val logger: Logger = LoggerFactory.getLogger(SparkConvertORCIDToOAF.getClass)
 
+
+  def run(spark:SparkSession, workingPath:String, targetPath:String) :Unit = {
+    implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
+    import spark.implicits._
+    val dataset: Dataset[ORCIDItem] =spark.read.load(s"$workingPath/orcidworksWithAuthor").as[ORCIDItem]
+
+    logger.info("Converting ORCID to OAF")
+    dataset.map(o => ORCIDToOAF.convertTOOAF(o)).write.mode(SaveMode.Overwrite).save(targetPath)
+  }
+
   def main(args: Array[String]): Unit = {
     val conf: SparkConf = new SparkConf()
     val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json")))
@@ -21,16 +31,11 @@ object SparkConvertORCIDToOAF {
         .appName(getClass.getSimpleName)
         .master(parser.get("master")).getOrCreate()
 
-    implicit val mapEncoderPubs: Encoder[Publication] = Encoders.kryo[Publication]
-    import spark.implicits._
 
     val workingPath = parser.get("workingPath")
     val targetPath = parser.get("targetPath")
 
-    val dataset: Dataset[ORCIDItem] =spark.read.load(s"$workingPath/orcidworksWithAuthor").as[ORCIDItem]
-
-    logger.info("Converting ORCID to OAF")
-    dataset.map(o => ORCIDToOAF.convertTOOAF(o)).write.mode(SaveMode.Overwrite).save(targetPath)
+   run(spark,workingPath, targetPath)
 
   }
 
diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
index d6911cfa78..31f3319122 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkPreprocessORCID.scala
@@ -50,7 +50,7 @@ object SparkPreprocessORCID {
 
   def main(args: Array[String]): Unit = {
     val conf: SparkConf = new SparkConf()
-    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/convert_orcid_to_oaf_params.json")))
+    val parser = new ArgumentApplicationParser(IOUtils.toString(SparkConvertORCIDToOAF.getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/preprocess_orcid_params.json")))
     parser.parseArgument(args)
     val spark: SparkSession =
       SparkSession
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/workflow.xml
deleted file mode 100644
index 63c2e9ef29..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/workflow.xml
+++ /dev/null
@@ -1,101 +0,0 @@
-<workflow-app name="import Crossref from index into HDFS" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-        <property>
-            <name>timestamp</name>
-            <description>Timestamp for incremental Harvesting</description>
-        </property>
-
-    </parameters>
-
-    <start to="ImportCrossRef"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="ImportCrossRef">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.crossref.CrossrefImporter</main-class>
-            <arg>-t</arg><arg>${workingPath}/input/crossref/index_update</arg>
-            <arg>-n</arg><arg>${nameNode}</arg>
-            <arg>-ts</arg><arg>${timestamp}</arg>
-        </java>
-        <ok to="GenerateDataset"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="GenerateDataset">
-            <spark xmlns="uri:oozie:spark-action:0.2">
-                <master>yarn-cluster</master>
-                <mode>cluster</mode>
-                <name>ExtractCrossrefToOAF</name>
-                <class>eu.dnetlib.doiboost.crossref.CrossrefDataset</class>
-                <jar>dhp-doiboost-${projectVersion}.jar</jar>
-                <spark-opts>
-                    --executor-memory=${sparkExecutorMemory}
-                    --executor-cores=${sparkExecutorCores}
-                    --driver-memory=${sparkDriverMemory}
-                    --conf spark.sql.shuffle.partitions=3840
-                    ${sparkExtraOPT}
-                </spark-opts>
-                <arg>--workingPath</arg><arg>/data/doiboost/input/crossref</arg>
-                <arg>--master</arg><arg>yarn-cluster</arg>
-            </spark>
-            <ok to="RenameDataset"/>
-            <error to="Kill"/>
-    </action>
-
-    <action name="RenameDataset">
-        <fs>
-            <delete path='${workingPath}/input/crossref/crossref_ds'/>
-            <move source="${workingPath}/input/crossref/crossref_ds_updated"
-                  target="${workingPath}/input/crossref/crossref_ds"/>
-        </fs>
-        <ok to="ConvertCrossrefToOAF"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertCrossrefToOAF">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>ConvertCrossrefToOAF</name>
-            <class>eu.dnetlib.doiboost.crossref.SparkMapDumpIntoOAF</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${workingPath}/input/crossref/crossref_ds</arg>
-            <arg>--targetPath</arg><arg>${workingPath}/process/</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/config-default.xml
deleted file mode 100644
index cf617a84c4..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/config-default.xml
+++ /dev/null
@@ -1,38 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>hive_metastore_uris</name>
-        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
-    </property>
-    <property>
-        <name>spark2YarnHistoryServerAddress</name>
-        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
-    </property>
-    <property>
-        <name>spark2EventLogDir</name>
-        <value>/user/spark/spark2ApplicationHistory</value>
-    </property>
-    <property>
-        <name>spark2ExtraListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
-    </property>
-    <property>
-        <name>spark2SqlQueryExecutionListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/workflow.xml
deleted file mode 100644
index dcde62c9d9..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/intersection/oozie_app/workflow.xml
+++ /dev/null
@@ -1,96 +0,0 @@
-<workflow-app name="Create DOIBoostActionSet" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>hostedByMapPath</name>
-            <description>the Hosted By Map Path</description>
-        </property>
-        <property>
-            <name>affiliationPath</name>
-            <description>the Affliation Path</description>
-        </property>
-        <property>
-            <name>paperAffiliationPath</name>
-            <description>the paperAffiliation Path</description>
-        </property>
-        <property>
-            <name>workingDirPath</name>
-            <description>the Working Path</description>
-        </property>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-    </parameters>
-
-
-
-    <start to="CreateDOIBoost"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-
-
-    <action name="CreateDOIBoost">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Create DOIBoost Infospace</name>
-            <class>eu.dnetlib.doiboost.SparkGenerateDoiBoost</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--hostedByMapPath</arg><arg>${hostedByMapPath}</arg>
-            <arg>--affiliationPath</arg><arg>${affiliationPath}</arg>
-            <arg>--paperAffiliationPath</arg><arg>${paperAffiliationPath}</arg>
-            <arg>--workingDirPath</arg><arg>${workingDirPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="GenerateActionSet"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="GenerateActionSet">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Generate DOIBoost ActionSet</name>
-            <class>eu.dnetlib.doiboost.SparkGenerateDOIBoostActionSet</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--dbPublicationPath</arg><arg>${workingDirPath}/doiBoostPublicationFiltered</arg>
-            <arg>--dbDatasetPath</arg><arg>${workingDirPath}/crossrefDataset</arg>
-            <arg>--crossRefRelation</arg><arg>${workingDirPath}/crossrefRelation</arg>
-            <arg>--dbaffiliationRelationPath</arg><arg>${workingDirPath}/doiBoostPublicationAffiliation</arg>
-            <arg>-do</arg><arg>${workingDirPath}/doiBoostOrganization</arg>
-            <arg>--targetPath</arg><arg>${workingDirPath}/actionDataSet</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/config-default.xml
deleted file mode 100644
index 59e5c059fc..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/config-default.xml
+++ /dev/null
@@ -1,42 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.wf.rerun.failnodes</name>
-        <value>false</value>
-    </property>
-    <property>
-        <name>hive_metastore_uris</name>
-        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
-    </property>
-    <property>
-        <name>spark2YarnHistoryServerAddress</name>
-        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
-    </property>
-    <property>
-        <name>spark2EventLogDir</name>
-        <value>/user/spark/spark2ApplicationHistory</value>
-    </property>
-    <property>
-        <name>spark2ExtraListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
-    </property>
-    <property>
-        <name>spark2SqlQueryExecutionListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/workflow.xml
deleted file mode 100644
index 9d19dddc71..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/mag/oozie_app/workflow.xml
+++ /dev/null
@@ -1,92 +0,0 @@
-<workflow-app name="import MAG into HDFS" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>sourcePath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>targetPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>workingPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-    </parameters>
-
-    <start to="ResetWorkingPath"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="ResetWorkingPath">
-        <fs>
-            <delete path='${workingPath}'/>
-            <mkdir path='${workingPath}'/>
-        </fs>
-        <ok to="ConvertMagToDataset"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ConvertMagToDataset">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert Mag to Dataset</name>
-            <class>eu.dnetlib.doiboost.mag.SparkImportMagIntoDataset</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
-            <arg>--targetPath</arg><arg>${workingPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="PreprocessMag"/>
-        <error to="Kill"/>
-    </action>
-
-
-
-    <action name="PreprocessMag">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert Mag to OAF Dataset</name>
-            <class>eu.dnetlib.doiboost.mag.SparkPreProcessMAG</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${workingPath}</arg>
-            <arg>--workingPath</arg><arg>${workingPath}/process</arg>
-            <arg>--targetPath</arg><arg>${targetPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/config-default.xml
deleted file mode 100644
index 508202e301..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/config-default.xml
+++ /dev/null
@@ -1,42 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>hive_metastore_uris</name>
-        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
-    </property>
-    <property>
-        <name>spark2YarnHistoryServerAddress</name>
-        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
-    </property>
-    <property>
-        <name>spark2EventLogDir</name>
-        <value>/user/spark/spark2ApplicationHistory</value>
-    </property>
-    <property>
-        <name>spark2ExtraListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
-    </property>
-    <property>
-        <name>spark2SqlQueryExecutionListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
deleted file mode 100644
index 34b4b5c5e3..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/oozie_app/workflow.xml
+++ /dev/null
@@ -1,453 +0,0 @@
-<workflow-app name="Generate DOIBoost ActionSet" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorIntersectionMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-
-
-        <!-- Itersection Parameters -->
-        <property>
-            <name>workingPath</name>
-            <description>the working Path</description>
-        </property>
-
-        <property>
-            <name>hostedByMapPath</name>
-            <description>the hostedByMap Path</description>
-        </property>
-        <property>
-            <name>outputPath</name>
-            <description>the Path of the sequence file action set</description>
-        </property>
-
-
-        <!-- Crossref Parameters -->
-        <property>
-            <name>inputPathCrossref</name>
-            <description>the Crossref input path</description>
-        </property>
-        <property>
-            <name>crossrefDumpPath</name>
-            <description>the Crossref dump path</description>
-        </property>
-<!--        <property>-->
-<!--            <name>crossrefTimestamp</name>-->
-<!--            <description>Timestamp for the Crossref incremental Harvesting</description>-->
-<!--        </property>-->
-<!--        <property>-->
-<!--            <name>esServer</name>-->
-<!--            <description>elasticsearch server url for the Crossref Harvesting</description>-->
-<!--        </property>-->
-<!--        <property>-->
-<!--            <name>esIndex</name>-->
-<!--            <description>elasticsearch index name for the Crossref Harvesting</description>-->
-<!--        </property>-->
-
-        <!--    MAG Parameters    -->
-        <property>
-            <name>MAGDumpPath</name>
-            <description>the MAG dump working path</description>
-        </property>
-
-        <property>
-            <name>inputPathMAG</name>
-            <description>the MAG working path</description>
-        </property>
-
-
-        <!--    UnpayWall Parameters    -->
-        <property>
-            <name>inputPathUnpayWall</name>
-            <description>the UnpayWall working path</description>
-        </property>
-
-        <!--    ORCID Parameters    -->
-        <property>
-            <name>inputPathOrcid</name>
-            <description>the ORCID input path</description>
-        </property>
-
-        <property>
-            <name>workingPathOrcid</name>
-            <description>the ORCID working path</description>
-        </property>
-
-    </parameters>
-
-    <global>
-        <job-tracker>${jobTracker}</job-tracker>
-        <name-node>${nameNode}</name-node>
-        <configuration>
-            <property>
-                <name>oozie.action.sharelib.for.spark</name>
-                <value>${oozieActionShareLibForSpark2}</value>
-            </property>
-        </configuration>
-    </global>
-
-    <start to="resume_from"/>
-
-    <decision name="resume_from">
-        <switch>
-            <case to="ConvertCrossrefToOAF">${wf:conf('resumeFrom') eq 'ConvertCrossrefToOAF'}</case>
-            <case to="ResetMagWorkingPath">${wf:conf('resumeFrom') eq 'ResetMagWorkingPath'}</case>
-            <case to="ProcessMAG">${wf:conf('resumeFrom') eq 'PreprocessMag'}</case>
-            <case to="ProcessUW">${wf:conf('resumeFrom') eq 'PreprocessUW'}</case>
-            <case to="ProcessORCID">${wf:conf('resumeFrom') eq 'PreprocessORCID'}</case>
-            <case to="CreateDOIBoost">${wf:conf('resumeFrom') eq 'CreateDOIBoost'}</case>
-            <case to="GenerateActionSet">${wf:conf('resumeFrom') eq 'GenerateActionSet'}</case>
-            <case to="GenerateCrossrefDataset">${wf:conf('resumeFrom') eq 'GenerateCrossrefDataset'}</case>
-            <default to="ImportCrossRef"/>
-        </switch>
-    </decision>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-<!--    <action name="ImportCrossRef">-->
-<!--        <java>-->
-<!--            <main-class>eu.dnetlib.doiboost.crossref.CrossrefImporter</main-class>-->
-<!--            <arg>&#45;&#45;targetPath</arg><arg>${inputPathCrossref}/index_update</arg>-->
-<!--            <arg>&#45;&#45;namenode</arg><arg>${nameNode}</arg>-->
-<!--            <arg>&#45;&#45;esServer</arg><arg>${esServer}</arg>-->
-<!--            <arg>&#45;&#45;esIndex</arg><arg>${esIndex}</arg>-->
-<!--            <arg>&#45;&#45;timestamp</arg><arg>${crossrefTimestamp}</arg>-->
-<!--        </java>-->
-<!--        <ok to="GenerateCrossrefDataset"/>-->
-<!--        <error to="Kill"/>-->
-<!--    </action>-->
-
-    <action name="ImportCrossRef">
-        <java>
-            <job-tracker>${jobTracker}</job-tracker>
-            <name-node>${nameNode}</name-node>
-            <main-class>eu.dnetlib.doiboost.crossref.ExtractCrossrefRecords</main-class>
-            <arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
-            <arg>--crossrefFileNameTarGz</arg><arg>${crossrefDumpPath}/crossref.tar.gz</arg>
-            <arg>--workingPath</arg><arg>${crossrefDumpPath}</arg>
-            <arg>--outputPath</arg><arg>${crossrefDumpPath}/files/</arg>
-        </java>
-        <ok to="UnpackCrossrefEntries"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="UnpackCrossrefEntries">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>SparkUnpackCrossrefEntries</name>
-            <class>eu.dnetlib.doiboost.crossref.UnpackCrtossrefEntries</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-            <arg>--sourcePath</arg><arg>${crossrefDumpPath}/files</arg>
-            <arg>--targetPath</arg><arg>${crossrefDumpPath}/crossref_unpack/</arg>
-
-        </spark>
-        <ok to="GenerateCrossrefDataset"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="GenerateCrossrefDataset">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>SparkGenerateCrossrefDataset</name>
-            <class>eu.dnetlib.doiboost.crossref.GenerateCrossrefDataset</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=7G
-                --executor-cores=2
-                --driver-memory=7G
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-            <arg>--sourcePath</arg><arg>${crossrefDumpPath}/crossref_unpack/</arg>
-            <arg>--targetPath</arg><arg>${inputPathCrossref}/crossref_ds</arg>
-
-        </spark>
-        <ok to="removeFiles"/>
-        <error to="Kill"/>
-    </action>
-
-        <action name="removeFiles">
-            <fs>
-<!--                <delete path="${crossrefDumpPath}/files"/>-->
-                    <delete path="${crossrefDumpPath}/crossref_unpack/"/>
-            </fs>
-            <ok to="ResetMagWorkingPath"/>
-            <error to="Kill"/>
-        </action>
-
-
-
-    <!-- CROSSREF SECTION -->
-
-<!--    <action name="GenerateCrossrefDataset">-->
-<!--            <spark xmlns="uri:oozie:spark-action:0.2">-->
-<!--                <master>yarn-cluster</master>-->
-<!--                <mode>cluster</mode>-->
-<!--                <name>GenerateCrossrefDataset</name>-->
-<!--                <class>eu.dnetlib.doiboost.crossref.CrossrefDataset</class>-->
-<!--                <jar>dhp-doiboost-${projectVersion}.jar</jar>-->
-<!--                <spark-opts>-->
-<!--                    &#45;&#45;executor-memory=${sparkExecutorMemory}-->
-<!--                    &#45;&#45;executor-cores=${sparkExecutorCores}-->
-<!--                    &#45;&#45;driver-memory=${sparkDriverMemory}-->
-<!--                    &#45;&#45;conf spark.sql.shuffle.partitions=3840-->
-<!--                    &#45;&#45;conf spark.extraListeners=${spark2ExtraListeners}-->
-<!--                    &#45;&#45;conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}-->
-<!--                    &#45;&#45;conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}-->
-<!--                    &#45;&#45;conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}-->
-<!--                </spark-opts>-->
-<!--                <arg>&#45;&#45;workingPath</arg><arg>${inputPathCrossref}</arg>-->
-<!--                <arg>&#45;&#45;master</arg><arg>yarn-cluster</arg>-->
-<!--            </spark>-->
-<!--            <ok to="RenameDataset"/>-->
-<!--            <error to="Kill"/>-->
-<!--    </action>-->
-
-<!--    <action name="RenameDataset">-->
-<!--        <fs>-->
-<!--            <delete path="${inputPathCrossref}/crossref_ds"/>-->
-<!--            <move source="${inputPathCrossref}/crossref_ds_updated"-->
-<!--                  target="${inputPathCrossref}/crossref_ds"/>-->
-<!--        </fs>-->
-<!--        <ok to="ResetMagWorkingPath"/>-->
-<!--        <error to="Kill"/>-->
-<!--    </action>-->
-
-
-
-    <!-- MAG SECTION -->
-    <action name="ResetMagWorkingPath">
-        <fs>
-            <delete path="${inputPathMAG}/dataset"/>
-            <delete path="${inputPathMAG}/process"/>
-        </fs>
-        <ok to="ConvertMagToDataset"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ConvertMagToDataset">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert Mag to Dataset</name>
-            <class>eu.dnetlib.doiboost.mag.SparkImportMagIntoDataset</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${MAGDumpPath}</arg>
-            <arg>--targetPath</arg><arg>${inputPathMAG}/dataset</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="ConvertCrossrefToOAF"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertCrossrefToOAF">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>ConvertCrossrefToOAF</name>
-            <class>eu.dnetlib.doiboost.crossref.SparkMapDumpIntoOAF</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${inputPathCrossref}/crossref_ds</arg>
-            <arg>--targetPath</arg><arg>${workingPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="ProcessMAG"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="ProcessMAG">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert Mag to OAF Dataset</name>
-            <class>eu.dnetlib.doiboost.mag.SparkProcessMAG</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorIntersectionMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${inputPathMAG}/dataset</arg>
-            <arg>--workingPath</arg><arg>${inputPathMAG}/process</arg>
-            <arg>--targetPath</arg><arg>${workingPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="ProcessUW"/>
-        <error to="Kill"/>
-    </action>
-
-    <!--  UnpayWall  SECTION -->
-
-    <action name="ProcessUW">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert UnpayWall to Dataset</name>
-            <class>eu.dnetlib.doiboost.uw.SparkMapUnpayWallToOAF</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${inputPathUnpayWall}/uw_extracted</arg>
-            <arg>--targetPath</arg><arg>${workingPath}/uwPublication</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="ProcessORCID"/>
-        <error to="Kill"/>
-    </action>
-
-    <!--  ORCID  SECTION -->
-    <action name="ProcessORCID">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert ORCID to Dataset</name>
-            <class>eu.dnetlib.doiboost.orcid.SparkPreprocessORCID</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${inputPathOrcid}</arg>
-            <arg>--workingPath</arg><arg>${workingPathOrcid}</arg>
-            <arg>--targetPath</arg><arg>${workingPath}/orcidPublication</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="CreateDOIBoost"/>
-        <error to="Kill"/>
-    </action>
-
-    <!-- INTERSECTION SECTION-->
-    <action name="CreateDOIBoost">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Create DOIBoost Infospace</name>
-            <class>eu.dnetlib.doiboost.SparkGenerateDoiBoost</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorIntersectionMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--hostedByMapPath</arg><arg>${hostedByMapPath}</arg>
-            <arg>--affiliationPath</arg><arg>${inputPathMAG}/dataset/Affiliations</arg>
-            <arg>--paperAffiliationPath</arg><arg>${inputPathMAG}/dataset/PaperAuthorAffiliations</arg>
-            <arg>--workingPath</arg><arg>${workingPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="GenerateActionSet"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="GenerateActionSet">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Generate DOIBoost ActionSet</name>
-            <class>eu.dnetlib.doiboost.SparkGenerateDOIBoostActionSet</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--dbPublicationPath</arg><arg>${workingPath}/doiBoostPublicationFiltered</arg>
-            <arg>--dbDatasetPath</arg><arg>${workingPath}/crossrefDataset</arg>
-            <arg>--crossRefRelation</arg><arg>${workingPath}/crossrefRelation</arg>
-            <arg>--dbaffiliationRelationPath</arg><arg>${workingPath}/doiBoostPublicationAffiliation</arg>
-            <arg>--dbOrganizationPath</arg><arg>${workingPath}/doiBoostOrganization</arg>
-            <arg>--targetPath</arg><arg>${workingPath}/actionDataSet</arg>
-            <arg>--sFilePath</arg><arg>${outputPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/config-default.xml
similarity index 100%
rename from dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/crossref/oozie_app/config-default.xml
rename to dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/config-default.xml
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/workflow.xml
new file mode 100644
index 0000000000..03f7b7566c
--- /dev/null
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/preprocess/oozie_app/workflow.xml
@@ -0,0 +1,216 @@
+<workflow-app name="Generate DOIBoost ActionSet" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>sparkDriverMemory</name>
+            <description>memory for driver process</description>
+        </property>
+        <property>
+            <name>sparkExecutorMemory</name>
+            <description>memory for individual executor</description>
+        </property>
+        <property>
+            <name>sparkExecutorCores</name>
+            <description>number of cores used by single executor</description>
+        </property>
+
+        <!-- Crossref Parameters -->
+        <property>
+            <name>inputPathCrossref</name>
+            <description>the Crossref input path</description>
+        </property>
+        <property>
+            <name>crossrefDumpPath</name>
+            <description>the Crossref dump path</description>
+        </property>
+
+        <!--    MAG Parameters    -->
+        <property>
+            <name>MAGDumpPath</name>
+            <description>the MAG dump working path</description>
+        </property>
+
+        <property>
+            <name>inputPathMAG</name>
+            <description>the MAG working path</description>
+        </property>
+
+
+        <!--    ORCID Parameters    -->
+        <property>
+            <name>inputPathOrcid</name>
+            <description>the ORCID input path</description>
+        </property>
+
+        <property>
+            <name>workingPathOrcid</name>
+            <description>the ORCID working path</description>
+        </property>
+
+    </parameters>
+
+    <global>
+        <job-tracker>${jobTracker}</job-tracker>
+        <name-node>${nameNode}</name-node>
+        <configuration>
+            <property>
+                <name>oozie.action.sharelib.for.spark</name>
+                <value>${oozieActionShareLibForSpark2}</value>
+            </property>
+        </configuration>
+    </global>
+
+    <start to="resume_from"/>
+
+    <decision name="resume_from">
+        <switch>
+            <case to="UnpackCrossrefEntries">${wf:conf('resumeFrom') eq 'UnpackCrossrefEntries'}</case>
+            <case to="GenerateCrossrefDataset">${wf:conf('resumeFrom') eq 'GenerateCrossrefDataset'}</case>
+            <case to="ResetMagWorkingPath">${wf:conf('resumeFrom') eq 'ResetMagWorkingPath'}</case>
+            <case to="ConvertMagToDataset">${wf:conf('resumeFrom') eq 'ConvertMagToDataset'}</case>
+            <case to="PreProcessORCID">${wf:conf('resumeFrom') eq 'PreProcessORCID'}</case>
+            <default to="ImportCrossRef"/>
+        </switch>
+    </decision>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="ImportCrossRef">
+        <java>
+            <job-tracker>${jobTracker}</job-tracker>
+            <name-node>${nameNode}</name-node>
+            <main-class>eu.dnetlib.doiboost.crossref.ExtractCrossrefRecords</main-class>
+            <arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
+            <arg>--crossrefFileNameTarGz</arg><arg>${crossrefDumpPath}/crossref.tar.gz</arg>
+            <arg>--workingPath</arg><arg>${crossrefDumpPath}</arg>
+            <arg>--outputPath</arg><arg>${crossrefDumpPath}/files/</arg>
+        </java>
+        <ok to="UnpackCrossrefEntries"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="UnpackCrossrefEntries">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>SparkUnpackCrossrefEntries</name>
+            <class>eu.dnetlib.doiboost.crossref.UnpackCrtossrefEntries</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+            <arg>--sourcePath</arg><arg>${crossrefDumpPath}/files</arg>
+            <arg>--targetPath</arg><arg>${crossrefDumpPath}/crossref_unpack/</arg>
+
+        </spark>
+        <ok to="GenerateCrossrefDataset"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="GenerateCrossrefDataset">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>SparkGenerateCrossrefDataset</name>
+            <class>eu.dnetlib.doiboost.crossref.GenerateCrossrefDataset</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=7G
+                --executor-cores=2
+                --driver-memory=7G
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+            <arg>--sourcePath</arg><arg>${crossrefDumpPath}/crossref_unpack/</arg>
+            <arg>--targetPath</arg><arg>${inputPathCrossref}/crossref_ds</arg>
+
+        </spark>
+        <ok to="removeFiles"/>
+        <error to="Kill"/>
+    </action>
+
+        <action name="removeFiles">
+            <fs>
+<!--                <delete path="${crossrefDumpPath}/files"/>-->
+                    <delete path="${crossrefDumpPath}/crossref_unpack/"/>
+            </fs>
+            <ok to="ResetMagWorkingPath"/>
+            <error to="Kill"/>
+        </action>
+
+    <!-- MAG SECTION -->
+    <action name="ResetMagWorkingPath">
+        <fs>
+            <delete path="${inputPathMAG}/dataset"/>
+            <delete path="${inputPathMAG}/process"/>
+        </fs>
+        <ok to="ConvertMagToDataset"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="ConvertMagToDataset">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Convert Mag to Dataset</name>
+            <class>eu.dnetlib.doiboost.mag.SparkImportMagIntoDataset</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${MAGDumpPath}</arg>
+            <arg>--targetPath</arg><arg>${inputPathMAG}/dataset</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="PreProcessORCID"/>
+        <error to="Kill"/>
+    </action>
+
+    <!--  ORCID  SECTION -->
+    <action name="PreProcessORCID">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>Convert ORCID to Dataset</name>
+            <class>eu.dnetlib.doiboost.orcid.SparkPreprocessORCID</class>
+            <jar>dhp-doiboost-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${inputPathOrcid}</arg>
+            <arg>--workingPath</arg><arg>${workingPathOrcid}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/config-default.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/config-default.xml
deleted file mode 100644
index cf617a84c4..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/config-default.xml
+++ /dev/null
@@ -1,38 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-    <property>
-        <name>hive_metastore_uris</name>
-        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
-    </property>
-    <property>
-        <name>spark2YarnHistoryServerAddress</name>
-        <value>http://iis-cdh5-test-gw.ocean.icm.edu.pl:18089</value>
-    </property>
-    <property>
-        <name>spark2EventLogDir</name>
-        <value>/user/spark/spark2ApplicationHistory</value>
-    </property>
-    <property>
-        <name>spark2ExtraListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorAppListener"</value>
-    </property>
-    <property>
-        <name>spark2SqlQueryExecutionListeners</name>
-        <value>"com.cloudera.spark.lineage.NavigatorQueryListener"</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/workflow.xml
deleted file mode 100644
index d2a69752ea..0000000000
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/unpaywall/oozie_app/workflow.xml
+++ /dev/null
@@ -1,55 +0,0 @@
-<workflow-app name="import UnpayWall into HDFS" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>sourcePath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>targetPath</name>
-            <description>the working dir base path</description>
-        </property>
-        <property>
-            <name>sparkDriverMemory</name>
-            <description>memory for driver process</description>
-        </property>
-        <property>
-            <name>sparkExecutorMemory</name>
-            <description>memory for individual executor</description>
-        </property>
-        <property>
-            <name>sparkExecutorCores</name>
-            <description>number of cores used by single executor</description>
-        </property>
-    </parameters>
-
-    <start to="PreprocessUW"/>
-
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="PreprocessUW">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>Convert UnpayWall to Dataset</name>
-            <class>eu.dnetlib.doiboost.uw.SparkMapUnpayWallToOAF</class>
-            <jar>dhp-doiboost-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                ${sparkExtraOPT}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}/uw_extracted</arg>
-            <arg>--targetPath</arg><arg>${targetPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
index dbdedcbd06..46d4ec08d6 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/mag/MAGMappingTest.scala
@@ -1,22 +1,15 @@
 package eu.dnetlib.doiboost.mag
 
-import java.sql.Timestamp
-
-import eu.dnetlib.dhp.schema.oaf.Publication
-import org.apache.htrace.fasterxml.jackson.databind.SerializationFeature
-import org.apache.spark.{SparkConf, SparkContext}
-import org.apache.spark.api.java.function.MapFunction
-import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession}
-import org.codehaus.jackson.map.{ObjectMapper, SerializationConfig}
-import org.junit.jupiter.api.Test
-import org.slf4j.{Logger, LoggerFactory}
+import org.apache.spark.SparkConf
+import org.apache.spark.sql.{Dataset, SparkSession}
+import org.codehaus.jackson.map.ObjectMapper
 import org.junit.jupiter.api.Assertions._
-import org.apache.spark.sql.functions._
+import org.junit.jupiter.api.Test
+import org.json4s.DefaultFormats
+import org.slf4j.{Logger, LoggerFactory}
 
-import scala.collection.JavaConverters._
+import java.sql.Timestamp
 import scala.io.Source
-import scala.reflect.ClassTag
-import scala.util.matching.Regex
 
 
 
@@ -65,8 +58,7 @@ class MAGMappingTest {
   @Test
   def normalizeDoiTest():Unit = {
 
-    import org.json4s.jackson.Serialization.write
-    import org.json4s.DefaultFormats
+
 
     implicit val formats = DefaultFormats
 
@@ -96,7 +88,6 @@ class MAGMappingTest {
   @Test
   def normalizeDoiTest2():Unit = {
 
-    import org.json4s.jackson.Serialization.write
     import org.json4s.DefaultFormats
 
     implicit val formats = DefaultFormats
diff --git a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
index 5fced8edb6..b484dc0878 100644
--- a/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
+++ b/dhp-workflows/dhp-doiboost/src/test/java/eu/dnetlib/doiboost/orcid/MappingORCIDToOAFTest.scala
@@ -48,6 +48,8 @@ class MappingORCIDToOAFTest {
 
     SparkPreprocessORCID.run( spark,sourcePath, workingPath)
 
+    SparkConvertORCIDToOAF.run(spark, workingPath,targetPath)
+
     val mapper = new ObjectMapper()
 
 
@@ -62,6 +64,8 @@ class MappingORCIDToOAFTest {
     println(mapper.writerWithDefaultPrettyPrinter().writeValueAsString(p.first()))
 
     spark.close()
+
+
   }
 
 

From a65667d2175d2b6a83a04462699d74b7aee13305 Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Wed, 14 Jul 2021 15:07:07 +0200
Subject: [PATCH 046/106] added publication to dataset even if no contributors

---
 .../SparkGenEnrichedOrcidWorks.java           | 27 +++++++++++++++----
 1 file changed, 22 insertions(+), 5 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
index 5bcec72246..ca39f99cc9 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
@@ -4,6 +4,7 @@ package eu.dnetlib.doiboost.orcidnodoi;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.IOException;
+import java.util.Arrays;
 import java.util.List;
 import java.util.Objects;
 import java.util.Optional;
@@ -32,10 +33,7 @@ import com.google.gson.JsonParser;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.schema.action.AtomicAction;
 import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.orcid.AuthorData;
-import eu.dnetlib.dhp.schema.orcid.AuthorSummary;
-import eu.dnetlib.dhp.schema.orcid.Work;
-import eu.dnetlib.dhp.schema.orcid.WorkDetail;
+import eu.dnetlib.dhp.schema.orcid.*;
 import eu.dnetlib.doiboost.orcid.json.JsonHelper;
 import eu.dnetlib.doiboost.orcid.util.HDFSUtil;
 import eu.dnetlib.doiboost.orcidnodoi.oaf.PublicationToOaf;
@@ -111,6 +109,10 @@ public class SparkGenEnrichedOrcidWorks {
 						Encoders.bean(WorkDetail.class));
 				logger.info("Works data loaded: " + workDataset.count());
 
+				final LongAccumulator warnNotFoundContributors = spark
+					.sparkContext()
+					.longAccumulator("warnNotFoundContributors");
+
 				JavaRDD<Tuple2<String, String>> enrichedWorksRDD = workDataset
 					.joinWith(
 						authorDataset,
@@ -119,7 +121,21 @@ public class SparkGenEnrichedOrcidWorks {
 						(MapFunction<Tuple2<WorkDetail, AuthorData>, Tuple2<String, String>>) value -> {
 							WorkDetail w = value._1;
 							AuthorData a = value._2;
-							AuthorMatcher.match(a, w.getContributors());
+							if (w.getContributors() == null
+								|| (w.getContributors() != null && w.getContributors().size() == 0)) {
+								Contributor c = new Contributor();
+								c.setName(a.getName());
+								c.setSurname(a.getSurname());
+								c.setCreditName(a.getCreditName());
+								c.setOid(a.getOid());
+								List<Contributor> contributors = Arrays.asList(c);
+								w.setContributors(contributors);
+								if (warnNotFoundContributors != null) {
+									warnNotFoundContributors.add(1);
+								}
+							} else {
+								AuthorMatcher.match(a, w.getContributors());
+							}
 							return new Tuple2<>(a.getOid(), JsonHelper.createOidWork(w));
 						},
 						Encoders.tuple(Encoders.STRING(), Encoders.STRING()))
@@ -180,6 +196,7 @@ public class SparkGenEnrichedOrcidWorks {
 
 				logger.info("parsedPublications: " + parsedPublications.value().toString());
 				logger.info("enrichedPublications: " + enrichedPublications.value().toString());
+				logger.info("warnNotFoundContributors: " + warnNotFoundContributors.value().toString());
 				logger.info("errorsGeneric: " + errorsGeneric.value().toString());
 				logger.info("errorsInvalidTitle: " + errorsInvalidTitle.value().toString());
 				logger.info("errorsNotFoundAuthors: " + errorsNotFoundAuthors.value().toString());

From 66604bb2b4fe045858b1d54ac3fc2df93bbbdeba Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Wed, 14 Jul 2021 16:44:51 +0200
Subject: [PATCH 047/106] added absolute path to process folder

---
 .../doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java   | 2 +-
 .../dhp/doiboost/orcidnodoi/oozie_app/workflow.xml        | 8 ++++----
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
index c342d2e790..1d47808ef1 100644
--- a/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
+++ b/dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcidnodoi/SparkGenEnrichedOrcidWorks.java
@@ -188,7 +188,7 @@ public class SparkGenEnrichedOrcidWorks {
 							OBJECT_MAPPER.writeValueAsString(new AtomicAction<>(Publication.class, p))))
 					.mapToPair(t -> new Tuple2(new Text(t._1()), new Text(t._2())))
 					.saveAsNewAPIHadoopFile(
-						workingPath.concat(outputEnrichedWorksPath),
+						outputEnrichedWorksPath,
 						Text.class,
 						Text.class,
 						SequenceFileOutputFormat.class,
diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
index f7ac04821e..05492d50d1 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
@@ -11,7 +11,7 @@
             <description>path where to store the action set</description>
         </property>
         <property>
-            <name>processOutputFolder</name>
+            <name>processOutputPath</name>
             <value>process_no_doi_dataset_prod</value>
             <description>temporary path where to store the action set</description>
         </property>
@@ -71,7 +71,7 @@
     
     <action name="ResetWorkingPath">
         <fs>
-            <delete path='${workingPath}/${processOutputFolder}'/>
+            <delete path='${processOutputPath}'/>
         </fs>
         <ok to="GenOrcidNoDoiDataset"/>
         <error to="Kill"/>
@@ -97,7 +97,7 @@
             <arg>--workingPath</arg><arg>${workingPath}/</arg>
             <arg>--hdfsServerUri</arg><arg>${nameNode}</arg>
             <arg>--orcidDataFolder</arg><arg>last_orcid_dataset</arg>
-            <arg>--outputEnrichedWorksPath</arg><arg>${processOutputFolder}</arg>
+            <arg>--outputEnrichedWorksPath</arg><arg>${processOutputPath}</arg>
         </spark>
         <ok to="importOrcidNoDoi"/>
         <error to="Kill"/>
@@ -105,7 +105,7 @@
 
     <action name="importOrcidNoDoi">
         <distcp xmlns="uri:oozie:distcp-action:0.2">
-            <arg>${workingPath}/${processOutputFolder}/*</arg>
+            <arg>${processOutputPath}/*</arg>
             <arg>${outputPath}</arg>
         </distcp>
         <ok to="End"/>

From 2dc50c0999738eb3051fb8570f3e3a0b4bb81c7e Mon Sep 17 00:00:00 2001
From: Enrico Ottonello <enrico.ottonello@isti.cnr.it>
Date: Wed, 14 Jul 2021 17:02:22 +0200
Subject: [PATCH 048/106] added default value to process path

---
 .../eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
index 05492d50d1..04ca05af2b 100644
--- a/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-doiboost/src/main/resources/eu/dnetlib/dhp/doiboost/orcidnodoi/oozie_app/workflow.xml
@@ -12,7 +12,7 @@
         </property>
         <property>
             <name>processOutputPath</name>
-            <value>process_no_doi_dataset_prod</value>
+            <value>/data/orcid_activities_2020/process_no_doi_dataset_prod</value>
             <description>temporary path where to store the action set</description>
         </property>
         <property>

From 5e5f65a3c313bbd985a9504b657251da43fb525c Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Mon, 19 Jul 2021 15:56:55 +0200
Subject: [PATCH 049/106] contents mapped from the stores with 'claim'
 interpretation will not change their identifier along their way towards the
 graph

---
 .../raw/AbstractMdRecordToOafMapper.java      | 24 +++++++++++++++----
 .../raw/GenerateEntitiesApplication.java      |  6 +++--
 .../dhp/oa/graph/raw/OafToOafMapper.java      |  5 ++++
 .../dhp/oa/graph/raw/OdfToOafMapper.java      |  5 ++++
 4 files changed, 34 insertions(+), 6 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
index 1e80dfd46c..cbaadf85c0 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
@@ -71,6 +71,8 @@ public abstract class AbstractMdRecordToOafMapper {
 
 	private final boolean shouldHashId;
 
+	private final boolean forceOriginalId;
+
 	protected static final String DATACITE_SCHEMA_KERNEL_4 = "http://datacite.org/schema/kernel-4";
 	protected static final String DATACITE_SCHEMA_KERNEL_4_SLASH = "http://datacite.org/schema/kernel-4/";
 	protected static final String DATACITE_SCHEMA_KERNEL_3 = "http://datacite.org/schema/kernel-3";
@@ -98,11 +100,20 @@ public abstract class AbstractMdRecordToOafMapper {
 		nsContext.put("datacite", DATACITE_SCHEMA_KERNEL_3);
 	}
 
+	protected AbstractMdRecordToOafMapper(final VocabularyGroup vocs, final boolean invisible,
+		final boolean shouldHashId, final boolean forceOriginalId) {
+		this.vocs = vocs;
+		this.invisible = invisible;
+		this.shouldHashId = shouldHashId;
+		this.forceOriginalId = forceOriginalId;
+	}
+
 	protected AbstractMdRecordToOafMapper(final VocabularyGroup vocs, final boolean invisible,
 		final boolean shouldHashId) {
 		this.vocs = vocs;
 		this.invisible = invisible;
 		this.shouldHashId = shouldHashId;
+		this.forceOriginalId = false;
 	}
 
 	public List<Oaf> processMdRecord(final String xml) {
@@ -190,10 +201,15 @@ public abstract class AbstractMdRecordToOafMapper {
 		final long lastUpdateTimestamp) {
 
 		final OafEntity entity = createEntity(doc, type, instances, collectedFrom, info, lastUpdateTimestamp);
-		final String id = IdentifierFactory.createIdentifier(entity, shouldHashId);
-		if (!id.equals(entity.getId())) {
-			entity.getOriginalId().add(entity.getId());
-			entity.setId(id);
+
+		if (!forceOriginalId) {
+			final String id = IdentifierFactory.createIdentifier(entity, shouldHashId);
+			if (!id.equals(entity.getId())) {
+				final Set<String> originalId = Sets.newHashSet(entity.getOriginalId());
+				originalId.add(entity.getId());
+				entity.setOriginalId(Lists.newArrayList(originalId));
+				entity.setId(id);
+			}
 		}
 
 		final List<Oaf> oafs = Lists.newArrayList(entity);
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/GenerateEntitiesApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/GenerateEntitiesApplication.java
index fcd6f459a7..bbfb7429f3 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/GenerateEntitiesApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/GenerateEntitiesApplication.java
@@ -163,11 +163,13 @@ public class GenerateEntitiesApplication {
 
 		switch (type.toLowerCase()) {
 			case "oaf-store-cleaned":
-			case "oaf-store-claim":
 				return new OafToOafMapper(vocs, false, shouldHashId).processMdRecord(s);
+			case "oaf-store-claim":
+				return new OafToOafMapper(vocs, false, shouldHashId, true).processMdRecord(s);
 			case "odf-store-cleaned":
-			case "odf-store-claim":
 				return new OdfToOafMapper(vocs, false, shouldHashId).processMdRecord(s);
+			case "odf-store-claim":
+				return new OdfToOafMapper(vocs, false, shouldHashId, true).processMdRecord(s);
 			case "oaf-store-intersection":
 				return new OafToOafMapper(vocs, true, shouldHashId).processMdRecord(s);
 			case "odf-store-intersection":
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OafToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OafToOafMapper.java
index 06aeab3451..d753cddeb4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OafToOafMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OafToOafMapper.java
@@ -27,6 +27,11 @@ import eu.dnetlib.dhp.schema.oaf.utils.ModelHardLimits;
 
 public class OafToOafMapper extends AbstractMdRecordToOafMapper {
 
+	public OafToOafMapper(final VocabularyGroup vocs, final boolean invisible, final boolean shouldHashId,
+		final boolean forceOrginalId) {
+		super(vocs, invisible, shouldHashId, forceOrginalId);
+	}
+
 	public OafToOafMapper(final VocabularyGroup vocs, final boolean invisible, final boolean shouldHashId) {
 		super(vocs, invisible, shouldHashId);
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OdfToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OdfToOafMapper.java
index b7400873b6..7925a78269 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OdfToOafMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/OdfToOafMapper.java
@@ -22,6 +22,11 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
 
 	public static final String HTTP_DX_DOI_PREIFX = "http://dx.doi.org/";
 
+	public OdfToOafMapper(final VocabularyGroup vocs, final boolean invisible, final boolean shouldHashId,
+		final boolean forceOrginalId) {
+		super(vocs, invisible, shouldHashId, forceOrginalId);
+	}
+
 	public OdfToOafMapper(final VocabularyGroup vocs, final boolean invisible, final boolean shouldHashId) {
 		super(vocs, invisible, shouldHashId);
 	}

From 5947cddafc11a26026a2a4cf1906ce395348b0c5 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Mon, 19 Jul 2021 17:52:24 +0200
Subject: [PATCH 050/106] adding record identifier among the originalIds
 regardless of what IdentifierFactory produces

---
 .../dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java      | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
index cbaadf85c0..03c3eeb3ce 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/AbstractMdRecordToOafMapper.java
@@ -202,12 +202,13 @@ public abstract class AbstractMdRecordToOafMapper {
 
 		final OafEntity entity = createEntity(doc, type, instances, collectedFrom, info, lastUpdateTimestamp);
 
+		final Set<String> originalId = Sets.newHashSet(entity.getOriginalId());
+		originalId.add(entity.getId());
+		entity.setOriginalId(Lists.newArrayList(originalId));
+
 		if (!forceOriginalId) {
 			final String id = IdentifierFactory.createIdentifier(entity, shouldHashId);
 			if (!id.equals(entity.getId())) {
-				final Set<String> originalId = Sets.newHashSet(entity.getOriginalId());
-				originalId.add(entity.getId());
-				entity.setOriginalId(Lists.newArrayList(originalId));
 				entity.setId(id);
 			}
 		}

From 77e8c6c7f7688078bb459da07566a6d75f03dccd Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 20 Jul 2021 11:51:33 +0200
Subject: [PATCH 051/106] filtering 'old' OpenAIRE ids from the
 entity.originalId[] array in the OAF -> XML searialization procedure

---
 .../eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java     | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
index 86bbae99ec..a985d23718 100644
--- a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
+++ b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
@@ -16,6 +16,7 @@ import javax.xml.transform.*;
 import javax.xml.transform.dom.DOMSource;
 import javax.xml.transform.stream.StreamResult;
 
+import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.spark.util.LongAccumulator;
 import org.dom4j.Document;
@@ -183,6 +184,7 @@ public class XmlRecordFactory implements Serializable {
 						.getOriginalId()
 						.stream()
 						.filter(Objects::nonNull)
+						.filter(id -> !id.matches("^\\d{2}" + IdentifierFactory.ID_PREFIX_SEPARATOR))
 						.map(s -> XmlSerializationUtils.asXmlElement("originalId", s))
 						.collect(Collectors.toList()));
 		}

From 906995847955881606e357abd4ebbd244f149eff Mon Sep 17 00:00:00 2001
From: Alessia Bardi <alessia.bardi@isti.cnr.it>
Date: Tue, 20 Jul 2021 19:31:43 +0200
Subject: [PATCH 052/106] tests for enermaps

---
 .../dnetlib/dhp/oa/graph/raw/MappersTest.java | 25 +++++++
 .../eu/dnetlib/dhp/oa/graph/raw/enermaps.xml  | 72 +++++++++++++++++++
 .../oa/provision/XmlRecordFactoryTest.java    | 29 ++++++++
 .../eu/dnetlib/dhp/oa/provision/enermaps.json |  1 +
 4 files changed, 127 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/enermaps.xml
 create mode 100644 dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/provision/enermaps.json

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
index 5b229a6255..495dc4a045 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
@@ -567,6 +567,31 @@ public class MappersTest {
 		assertNotNull(d.getInstance().get(0).getUrl());
 	}
 
+	@Test
+	void testEnermaps() throws IOException {
+		final String xml = IOUtils.toString(getClass().getResourceAsStream("enermaps.xml"));
+		final List<Oaf> list = new OdfToOafMapper(vocs, false, true).processMdRecord(xml);
+
+		System.out.println("***************");
+		System.out.println(new ObjectMapper().writeValueAsString(list));
+		System.out.println("***************");
+
+		assertEquals(1, list.size());
+		assertTrue(list.get(0) instanceof Dataset);
+
+		final Dataset d = (Dataset) list.get(0);
+
+		assertValidId(d.getId());
+		assertValidId(d.getCollectedfrom().get(0).getKey());
+		assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue()));
+		assertEquals(1, d.getAuthor().size());
+		assertEquals(1, d.getInstance().size());
+		assertNotNull(d.getInstance().get(0).getUrl());
+		assertNotNull(d.getContext());
+		assertTrue(StringUtils.isNotBlank(d.getContext().get(0).getId()));
+		assertEquals("enermaps::selection::tgs00004", d.getContext().get(0).getId());
+	}
+
 	@Test
 	void testClaimFromCrossref() throws IOException {
 		final String xml = IOUtils.toString(getClass().getResourceAsStream("oaf_claim_crossref.xml"));
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/enermaps.xml b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/enermaps.xml
new file mode 100644
index 0000000000..362b40c85c
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/enermaps.xml
@@ -0,0 +1,72 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<record xmlns="http://datacite.org/schema/kernel-4"
+        xmlns:dr="http://www.driver-repository.eu/namespace/dr" xmlns:oaf="http://namespace.openaire.eu/oaf">
+    <oai:header xmlns="http://namespace.openaire.eu/"
+                xmlns:dc="http://purl.org/dc/elements/1.1/"
+                xmlns:dri="http://www.driver-repository.eu/namespace/dri"
+                xmlns:oai="http://www.openarchives.org/OAI/2.0/"
+                xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+        <dri:objIdentifier>enermaps____::04149ee428d07360314c2cb3ba95d41e</dri:objIdentifier>
+        <dri:recordIdentifier>tgs00004</dri:recordIdentifier>
+        <dri:dateOfCollection>2021-07-20T18:43:12.096+02:00</dri:dateOfCollection>
+        <oaf:datasourceprefix>enermaps____</oaf:datasourceprefix>
+    </oai:header>
+    <metadata>
+        <resource>
+            <identifier identifierType="URL">https://ec.europa.eu/eurostat/web/products-datasets/-/tgs00004</identifier>
+            <creators>
+                <creator>
+                    <creatorName>Statistical Office of the European Union (Eurostat)</creatorName>
+                </creator>
+            </creators>
+            <titles>
+                <title>
+                    Regional GDP
+                </title>
+            </titles>
+            <publisher>Statistical Office of the European Union (Eurostat)</publisher>
+            <publicationYear>2020</publicationYear>
+            <dates>
+                <date dateType="Issued">2020-10-07</date>
+            </dates>
+            <resourceType resourceTypeGeneral="Dataset"/>
+            <rightsList>
+                <rights rightsURI="info:eu-repo/semantics/openAccess">OPEN</rights>
+                <rights rightsURI="https://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International</rights>
+            </rightsList>
+            <descriptions>
+                <description descriptionType="Abstract" xml:lang="EN">GDP expressed in PPS (purchasing power standards) eliminates differences in price levels between countries. Calculations on a per inhabitant basis allow for the comparison of economies and regions significantly different in absolute size. GDP per inhabitant in PPS is the key variable for determining the eligibility of NUTS 2 regions in the framework of the European Unions structural policy.</description>
+            </descriptions>
+            <dr:CobjCategory type="dataset">0021</dr:CobjCategory>
+            <oaf:dateAccepted>2020-10-07</oaf:dateAccepted>
+            <oaf:accessrights>OPEN</oaf:accessrights>
+            <oaf:license>Creative Commons Attribution 4.0 International</oaf:license>
+            <oaf:hostedBy
+                    id="openaire____::1256f046-bf1f-4afc-8b47-d0b147148b18" name="Unknown Repository"/>
+            <oaf:collectedFrom id="enermaps____::db" name="Enermaps"/>
+            <oaf:concept id="enermaps::selection::tgs00004"/>
+        </resource>
+    </metadata>
+    <about xmlns="" xmlns:dc="http://purl.org/dc/elements/1.1/"
+           xmlns:dri="http://www.driver-repository.eu/namespace/dri"
+           xmlns:oai="http://www.openarchives.org/OAI/2.0/"
+           xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+        <provenance xmlns="http://www.openarchives.org/OAI/2.0/provenance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/provenance http://www.openarchives.org/OAI/2.0/provenance.xsd">
+            <originDescription altered="true" harvestDate="2021-07-20T18:43:12.096+02:00">
+                <baseURL>https%3A%2F%2Flab.idiap.ch%2Fenermaps%2Fapi%2Fdatacite</baseURL>
+                <identifier/>
+                <datestamp/>
+                <metadataNamespace/>
+            </originDescription>
+        </provenance>
+        <oaf:datainfo>
+            <oaf:inferred>false</oaf:inferred>
+            <oaf:deletedbyinference>false</oaf:deletedbyinference>
+            <oaf:trust>0.9</oaf:trust>
+            <oaf:inferenceprovenance/>
+            <oaf:provenanceaction classid="sysimport:crosswalk"
+                                  classname="sysimport:crosswalk"
+                                  schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions"/>
+        </oaf:datainfo>
+    </about>
+</record>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
index 6631cb4da6..a5a1563aa0 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
@@ -7,6 +7,8 @@ import java.io.IOException;
 import java.io.StringReader;
 import java.util.List;
 
+import eu.dnetlib.dhp.oa.provision.utils.ContextDef;
+import eu.dnetlib.dhp.schema.oaf.Dataset;
 import org.apache.commons.io.IOUtils;
 import org.dom4j.Document;
 import org.dom4j.DocumentException;
@@ -131,4 +133,31 @@ public class XmlRecordFactoryTest {
 		System.out.println(doc.asXML());
 		assertEquals("", doc.valueOf("//rel/validated"));
 	}
+
+	@Test
+	public void testEnermapsRecord() throws IOException, DocumentException {
+
+		String contextmap = "<entries><entry id=\"enermaps\" label=\"Energy Research\" name=\"context\" type=\"community\"/>" +
+				"<entry id=\"enermaps::selection\" label=\"Featured dataset\" name=\"category\"/>"+
+				"<entry id=\"enermaps::selection::tgs00004\" label=\"Dataset title\" name=\"concept\"/>"+
+				"</entries>";
+
+		ContextMapper contextMapper = ContextMapper.fromXml(contextmap);
+		XmlRecordFactory xmlRecordFactory = new XmlRecordFactory(contextMapper, false, XmlConverterJob.schemaLocation,
+				otherDsTypeId);
+
+		Dataset d = OBJECT_MAPPER
+				.readValue(IOUtils.toString(getClass().getResourceAsStream("enermaps.json")), Dataset.class);
+
+		JoinedEntity je = new JoinedEntity<>(d);
+
+		String xml = xmlRecordFactory.build(je);
+
+		assertNotNull(xml);
+
+		Document doc = new SAXReader().read(new StringReader(xml));
+		assertNotNull(doc);
+		System.out.println(doc.asXML());
+		assertEquals("enermaps::selection::tgs00004", doc.valueOf("//concept/@id"));
+	}
 }
diff --git a/dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/provision/enermaps.json b/dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/provision/enermaps.json
new file mode 100644
index 0000000000..dcd4c2ee17
--- /dev/null
+++ b/dhp-workflows/dhp-graph-provision/src/test/resources/eu/dnetlib/dhp/oa/provision/enermaps.json
@@ -0,0 +1 @@
+{"collectedfrom":[{"key":"10|enermaps____::d77d5e503ad1439f585ac494268b351b","value":"Enermaps","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626800904248,"id":"50|enermaps____::04149ee428d07360314c2cb3ba95d41e","originalId":["50|enermaps____::04149ee428d07360314c2cb3ba95d41e","tgs00004"],"pid":[],"dateofcollection":"2021-07-20T18:43:12.096+02:00","dateoftransformation":"","extraInfo":[],"oaiprovenance":{"originDescription":{"harvestDate":"2021-07-20T18:43:12.096+02:00","altered":true,"baseURL":"https%3A%2F%2Flab.idiap.ch%2Fenermaps%2Fapi%2Fdatacite","identifier":"","datestamp":"","metadataNamespace":""}},"measures":null,"author":[{"fullname":"Statistical Office of the European Union (Eurostat)","name":"","surname":"","rank":1,"pid":[],"affiliation":[]}],"resulttype":{"classid":"dataset","classname":"dataset","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"UNKNOWN","classname":"Unknown","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[],"subject":[],"title":[{"value":"\n                    Regional GDP\n                ","qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"relevantdate":[{"value":"2020-10-07","qualifier":{"classid":"Issued","classname":"Issued","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"description":[{"value":"GDP expressed in PPS (purchasing power standards) eliminates differences in price levels between countries. Calculations on a per inhabitant basis allow for the comparison of economies and regions significantly different in absolute size. GDP per inhabitant in PPS is the key variable for determining the eligibility of NUTS 2 regions in the framework of the European Unions structural policy.","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"dateofacceptance":{"value":"2020-10-07","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"publisher":{"value":"Statistical Office of the European Union (Eurostat)","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"embargoenddate":null,"source":[],"fulltext":[],"format":[],"contributor":[],"resourcetype":{"classid":"UNKNOWN","classname":"Unknown","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"coverage":[],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"context":[{"id":"enermaps::selection::tgs00004","dataInfo":[{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}]}],"externalReference":[],"instance":[{"license":{"value":"Creative Commons Attribution 4.0 International","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0021","classname":"Dataset","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository","dataInfo":null},"url":["https://ec.europa.eu/eurostat/web/products-datasets/-/tgs00004"],"distributionlocation":null,"collectedfrom":{"key":"10|enermaps____::d77d5e503ad1439f585ac494268b351b","value":"Enermaps","dataInfo":null},"pid":[],"alternateIdentifier":[],"dateofacceptance":{"value":"2020-10-07","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"processingchargeamount":null,"processingchargecurrency":null,"refereed":{"classid":"UNKNOWN","classname":"Unknown","schemeid":"dnet:review_levels","schemename":"dnet:review_levels"}}],"storagedate":{"value":"2020-10-07","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk","classname":"sysimport:crosswalk","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"device":null,"size":null,"version":null,"lastmetadataupdate":null,"metadataversionnumber":null,"geolocation":[]}

From ffdb2a3ea39823e04062d05f4ce50d6e0f9cf0f0 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Fri, 23 Jul 2021 11:55:55 +0200
Subject: [PATCH 053/106] [cleaning] fixed filtering function for missing
 titles

---
 .../eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
index a75cc52e6a..e5181b1119 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
@@ -98,7 +98,7 @@ public class GraphCleaningFunctions extends CleaningFunctions {
 
 			Result r = (Result) value;
 
-			if (Objects.nonNull(r.getTitle()) && r.getTitle().isEmpty()) {
+			if (Objects.isNull(r.getTitle()) || r.getTitle().isEmpty()) {
 				return false;
 			}
 

From 5b6844b969ba4bff22b2f38e9aaf414aa6ac5056 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Fri, 23 Jul 2021 18:14:37 +0200
Subject: [PATCH 054/106] mapping funding relations from Datacite should be
 done according to the actual result identifier

---
 .../actionmanager/datacite/DataciteToOAFTransformation.scala  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
index 0cdf0accb1..045927bed1 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
@@ -532,11 +532,11 @@ object DataciteToOAFTransformation {
       JField("awardUri", JString(awardUri)) <- fundingReferences
     } yield awardUri
 
+    result.setId(IdentifierFactory.createIdentifier(result))
     var relations: List[Relation] = awardUris.flatMap(a => get_projectRelation(a, result.getId)).filter(r => r != null)
 
-
     fix_figshare(result)
-    result.setId(IdentifierFactory.createIdentifier(result))
+
     if (result.getId == null)
       return List()
 

From 998b66855abcfe828f670586793b5dbefafa442d Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 27 Jul 2021 15:11:37 +0200
Subject: [PATCH 055/106] updated assertions in
 eu.dnetlib.dhp.oa.graph.raw.MappersTest

---
 .../dnetlib/dhp/oa/graph/raw/MappersTest.java | 58 ++++++++-----------
 1 file changed, 24 insertions(+), 34 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
index 495dc4a045..aeeceaeb58 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
@@ -1,17 +1,13 @@
 
 package eu.dnetlib.dhp.oa.graph.raw;
 
-import static org.junit.jupiter.api.Assertions.assertEquals;
-import static org.junit.jupiter.api.Assertions.assertFalse;
-import static org.junit.jupiter.api.Assertions.assertNotNull;
-import static org.junit.jupiter.api.Assertions.assertNull;
-import static org.junit.jupiter.api.Assertions.assertTrue;
-import static org.mockito.Mockito.lenient;
-
-import java.io.IOException;
-import java.util.List;
-import java.util.Optional;
-
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
+import eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.oaf.*;
+import eu.dnetlib.dhp.schema.oaf.utils.PidType;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.junit.jupiter.api.BeforeEach;
@@ -20,22 +16,12 @@ import org.junit.jupiter.api.extension.ExtendWith;
 import org.mockito.Mock;
 import org.mockito.junit.jupiter.MockitoExtension;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
+import java.io.IOException;
+import java.util.List;
+import java.util.Optional;
 
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
-import eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest;
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.oaf.Author;
-import eu.dnetlib.dhp.schema.oaf.Dataset;
-import eu.dnetlib.dhp.schema.oaf.Field;
-import eu.dnetlib.dhp.schema.oaf.Instance;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.Publication;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.schema.oaf.Software;
-import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
-import eu.dnetlib.dhp.schema.oaf.utils.PidType;
-import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import static org.junit.jupiter.api.Assertions.*;
+import static org.mockito.Mockito.lenient;
 
 @ExtendWith(MockitoExtension.class)
 public class MappersTest {
@@ -74,7 +60,7 @@ public class MappersTest {
 
 		assertValidId(p.getId());
 
-		assertEquals(1, p.getOriginalId().size());
+		assertEquals(2, p.getOriginalId().size());
 		assertTrue(p.getOriginalId().contains("10.3897/oneeco.2.e13718"));
 
 		assertValidId(p.getCollectedfrom().get(0).getKey());
@@ -261,8 +247,8 @@ public class MappersTest {
 		final Relation r2 = (Relation) list.get(2);
 
 		assertValidId(d.getId());
-		assertEquals(1, d.getOriginalId().size());
-		assertTrue(d.getOriginalId().contains("oai:zenodo.org:3234526"));
+		assertEquals(2, d.getOriginalId().size());
+		assertTrue(d.getOriginalId().stream().anyMatch(oid -> oid.equals("oai:zenodo.org:3234526")));
 		assertValidId(d.getCollectedfrom().get(0).getKey());
 		assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue()));
 		assertTrue(d.getAuthor().size() > 0);
@@ -351,8 +337,11 @@ public class MappersTest {
 		final Publication p = (Publication) list.get(0);
 
 		assertValidId(p.getId());
-		assertTrue(p.getOriginalId().size() == 1);
-		assertEquals("oai:pub.uni-bielefeld.de:2949739", p.getOriginalId().get(0));
+		assertEquals(2, p.getOriginalId().size());
+
+		assertTrue(p.getOriginalId().stream().anyMatch(oid -> oid.equals("oai:pub.uni-bielefeld.de:2949739")));
+		//assertEquals("oai:pub.uni-bielefeld.de:2949739", p.getOriginalId().get(0));
+
 		assertValidId(p.getCollectedfrom().get(0).getKey());
 		assertTrue(p.getAuthor().size() > 0);
 
@@ -413,7 +402,8 @@ public class MappersTest {
 		assertEquals(ModelConstants.DNET_PROVENANCE_ACTIONS, d.getDataInfo().getProvenanceaction().getSchemename());
 
 		assertValidId(d.getId());
-		assertTrue(d.getOriginalId().size() == 1);
+		assertEquals(2, d.getOriginalId().size());
+
 		assertEquals("feabb67c-1fd1-423b-aec6-606d04ce53c6", d.getOriginalId().get(0));
 		assertValidId(d.getCollectedfrom().get(0).getKey());
 
@@ -688,8 +678,8 @@ public class MappersTest {
 		final Dataset p = (Dataset) list.get(0);
 
 		assertValidId(p.getId());
-		assertTrue(p.getOriginalId().size() == 1);
-		assertEquals("df76e73f-0483-49a4-a9bb-63f2f985574a", p.getOriginalId().get(0));
+		assertEquals(2, p.getOriginalId().size());
+		assertTrue(p.getOriginalId().stream().anyMatch(oid -> oid.equals("df76e73f-0483-49a4-a9bb-63f2f985574a")));
 		assertValidId(p.getCollectedfrom().get(0).getKey());
 		assertTrue(p.getAuthor().size() > 0);
 

From d267dce52009efb3e7db40548fcc7f8337b18d70 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 27 Jul 2021 17:18:29 +0200
Subject: [PATCH 056/106] [raw_all] added extra workflow step for patching the
 identifiers in the relations, given an id mapping dataset

---
 .../graph/raw/PatchRelationsApplication.java  | 117 ++++++++++++++++++
 .../graph/raw/common/RelationIdMapping.java   |  24 ++++
 .../oa/graph/patch_relations_parameters.json  |  26 ++++
 .../oa/graph/raw_all/oozie_app/workflow.xml   |  47 ++++++-
 4 files changed, 213 insertions(+), 1 deletion(-)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
new file mode 100644
index 0000000000..151f5ba3f9
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
@@ -0,0 +1,117 @@
+package eu.dnetlib.dhp.oa.graph.raw;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.oa.graph.raw.common.RelationIdMapping;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+import scala.Tuple2;
+
+import java.io.FileNotFoundException;
+import java.util.Objects;
+import java.util.Optional;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+public class PatchRelationsApplication {
+
+    private static final Logger log = LoggerFactory.getLogger(PatchRelationsApplication.class);
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+    public static void main(final String[] args) throws Exception {
+        final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+                IOUtils
+                        .toString(
+                                Optional.ofNullable(
+                                PatchRelationsApplication.class
+                                        .getResourceAsStream(
+                                                "/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json"))
+                                .orElseThrow(FileNotFoundException::new)
+                        ));
+        parser.parseArgument(args);
+
+        final Boolean isSparkSessionManaged = Optional
+                .ofNullable(parser.get("isSparkSessionManaged"))
+                .map(Boolean::valueOf)
+                .orElse(Boolean.TRUE);
+        log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+        final String graphBasePath = parser.get("graphBasePath");
+        log.info("graphBasePath: {}", graphBasePath);
+
+        final String workingDir = parser.get("workingDir");
+        log.info("workingDir: {}", workingDir);
+
+        final String idMappingPath = parser.get("idMappingPath");
+        log.info("idMappingPath: {}", idMappingPath);
+
+        final SparkConf conf = new SparkConf();
+        runWithSparkSession(
+                conf,
+                isSparkSessionManaged,
+                spark -> patchRelations(spark, graphBasePath, workingDir, idMappingPath));
+    }
+
+    /**
+     * Substitutes the identifiers (source/target) from the set of relations part of the graphBasePath included in the
+     * mapping provided by the dataset stored on idMappingPath, using workingDir as intermediate storage location.
+     *
+     * @param spark the SparkSession
+     * @param graphBasePath base graph path providing the set of relations to patch
+     * @param workingDir intermediate storage location
+     * @param idMappingPath dataset providing the old -> new identifier mapping
+     */
+    private static void patchRelations(final SparkSession spark, final String graphBasePath, final String workingDir, final String idMappingPath) {
+
+        final String relationPath = graphBasePath + "/relation";
+
+        final Dataset<Relation> rels = Utils.readPath(spark, relationPath, Relation.class);
+        final Dataset<RelationIdMapping> idMapping = Utils.readPath(spark, idMappingPath, RelationIdMapping.class);
+
+        rels
+                .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "full")
+                .filter((FilterFunction<Tuple2<Relation, RelationIdMapping>>) t -> Objects.nonNull(t._1()))
+                .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
+                    final Relation r = t._1();
+                    Optional.ofNullable(t._2())
+                            .map(RelationIdMapping::getNewId)
+                            .ifPresent(r::setSource);
+                    return r;
+                }, Encoders.bean(Relation.class))
+                .joinWith(idMapping, rels.col("target").equalTo(idMapping.col("oldId")), "full")
+                .filter((FilterFunction<Tuple2<Relation, RelationIdMapping>>) t -> Objects.nonNull(t._1()))
+                .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
+                    final Relation r = t._1();
+                    Optional.ofNullable(t._2())
+                            .map(RelationIdMapping::getNewId)
+                            .ifPresent(r::setTarget);
+                    return r;
+                }, Encoders.bean(Relation.class))
+                .map(
+                        (MapFunction<Relation, String>) OBJECT_MAPPER::writeValueAsString,
+                        Encoders.STRING())
+                .write()
+                .mode(SaveMode.Overwrite)
+                .option("compression", "gzip")
+                .text(workingDir);
+
+        spark.read().textFile(workingDir)
+                .write()
+                .mode(SaveMode.Overwrite)
+                .option("compression", "gzip")
+                .text(relationPath);
+    }
+
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
new file mode 100644
index 0000000000..f251da8c33
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
@@ -0,0 +1,24 @@
+package eu.dnetlib.dhp.oa.graph.raw.common;
+
+public class RelationIdMapping {
+
+    private String oldId;
+
+    private String newId;
+
+    public String getOldId() {
+        return oldId;
+    }
+
+    public void setOldId(final String oldId) {
+        this.oldId = oldId;
+    }
+
+    public String getNewId() {
+        return newId;
+    }
+
+    public void setNewId(final String newId) {
+        this.newId = newId;
+    }
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json
new file mode 100644
index 0000000000..178c2d69bf
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json
@@ -0,0 +1,26 @@
+[
+  {
+    "paramName": "issm",
+    "paramLongName": "isSparkSessionManaged",
+    "paramDescription": "when true will stop SparkSession after job execution",
+    "paramRequired": false
+  },
+  {
+    "paramName": "g",
+    "paramLongName": "graphBasePath",
+    "paramDescription": "base graph path providing the set of relations to patch",
+    "paramRequired": true
+  },
+  {
+    "paramName": "w",
+    "paramLongName": "workingDir",
+    "paramDescription": "intermediate storage location",
+    "paramRequired": true
+  },
+  {
+    "paramName": "i",
+    "paramLongName": "idMappingPath",
+    "paramDescription": "dataset providing the old -> new identifier mapping",
+    "paramRequired": true
+  }
+]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index 7f1ecb39fb..e7320de3b3 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -100,6 +100,16 @@
             <value></value>
             <description>a blacklist of nsprefixes (comma separeted)</description>
         </property>
+        <property>
+            <name>shouldPatchRelations</name>
+            <value>false</value>
+            <description>activates the relation patching phase, driven by the content in ${idMappingPath}</description>
+        </property>
+        <property>
+            <name>idMappingPath</name>
+            <value></value>
+            <description>path pointing to the relations identifiers mapping dataset</description>
+        </property>
         <property>
             <name>sparkDriverMemory</name>
             <description>memory for driver process</description>
@@ -538,7 +548,42 @@
         <error to="Kill"/>
     </action>
 
-    <join name="wait_graphs" to="fork_merge_claims"/>
+    <join name="wait_graphs" to="patchRelations"/>
+
+    <decision name="decisionPatchRelations">
+        <switch>
+            <case to="patchRelations">
+                ${(shouldPatchRelations eq "true") and
+                (fs:exists(concat(concat(wf:conf('nameNode'),'/'),wf:conf('idMappingPath'))) eq "true")}
+            </case>
+            <default to="fork_merge_claims"/>
+        </switch>
+    </decision>
+
+    <action name="patchRelations">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>PatchRelations</name>
+            <class>eu.dnetlib.dhp.oa.graph.raw.PatchRelationsApplication</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory ${sparkExecutorMemory}
+                --executor-cores ${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=7680
+            </spark-opts>
+            <arg>--graphBasePath</arg><arg>${workingDir}/graph_raw</arg>
+            <arg>--workingDir</arg><arg>${workingDir}/patch_relations</arg>
+            <arg>--idMappingPath</arg><arg>${idMappingPath}</arg>
+        </spark>
+        <ok to="fork_merge_claims"/>
+        <error to="Kill"/>
+    </action>
 
     <fork name="fork_merge_claims">
         <path start="merge_claims_publication"/>

From 9594343725ca1bf512da19aff1c2bdd4e98c6557 Mon Sep 17 00:00:00 2001
From: Alessia Bardi <alessia.bardi@isti.cnr.it>
Date: Wed, 28 Jul 2021 11:41:34 +0200
Subject: [PATCH 057/106] code formatting after mvn compile

---
 .../dhp/oa/provision/utils/XmlRecordFactory.java |  2 +-
 .../dhp/oa/provision/XmlRecordFactoryTest.java   | 16 ++++++++--------
 2 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
index a985d23718..2c82402900 100644
--- a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
+++ b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/utils/XmlRecordFactory.java
@@ -16,7 +16,6 @@ import javax.xml.transform.*;
 import javax.xml.transform.dom.DOMSource;
 import javax.xml.transform.stream.StreamResult;
 
-import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.spark.util.LongAccumulator;
 import org.dom4j.Document;
@@ -43,6 +42,7 @@ import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.oaf.*;
 import eu.dnetlib.dhp.schema.oaf.Result;
+import eu.dnetlib.dhp.schema.oaf.utils.IdentifierFactory;
 
 public class XmlRecordFactory implements Serializable {
 
diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
index a5a1563aa0..897e507e19 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/XmlRecordFactoryTest.java
@@ -7,8 +7,6 @@ import java.io.IOException;
 import java.io.StringReader;
 import java.util.List;
 
-import eu.dnetlib.dhp.oa.provision.utils.ContextDef;
-import eu.dnetlib.dhp.schema.oaf.Dataset;
 import org.apache.commons.io.IOUtils;
 import org.dom4j.Document;
 import org.dom4j.DocumentException;
@@ -25,6 +23,7 @@ import eu.dnetlib.dhp.oa.provision.model.RelatedEntity;
 import eu.dnetlib.dhp.oa.provision.model.RelatedEntityWrapper;
 import eu.dnetlib.dhp.oa.provision.utils.ContextMapper;
 import eu.dnetlib.dhp.oa.provision.utils.XmlRecordFactory;
+import eu.dnetlib.dhp.schema.oaf.Dataset;
 import eu.dnetlib.dhp.schema.oaf.Project;
 import eu.dnetlib.dhp.schema.oaf.Publication;
 import eu.dnetlib.dhp.schema.oaf.Relation;
@@ -137,17 +136,18 @@ public class XmlRecordFactoryTest {
 	@Test
 	public void testEnermapsRecord() throws IOException, DocumentException {
 
-		String contextmap = "<entries><entry id=\"enermaps\" label=\"Energy Research\" name=\"context\" type=\"community\"/>" +
-				"<entry id=\"enermaps::selection\" label=\"Featured dataset\" name=\"category\"/>"+
-				"<entry id=\"enermaps::selection::tgs00004\" label=\"Dataset title\" name=\"concept\"/>"+
-				"</entries>";
+		String contextmap = "<entries><entry id=\"enermaps\" label=\"Energy Research\" name=\"context\" type=\"community\"/>"
+			+
+			"<entry id=\"enermaps::selection\" label=\"Featured dataset\" name=\"category\"/>" +
+			"<entry id=\"enermaps::selection::tgs00004\" label=\"Dataset title\" name=\"concept\"/>" +
+			"</entries>";
 
 		ContextMapper contextMapper = ContextMapper.fromXml(contextmap);
 		XmlRecordFactory xmlRecordFactory = new XmlRecordFactory(contextMapper, false, XmlConverterJob.schemaLocation,
-				otherDsTypeId);
+			otherDsTypeId);
 
 		Dataset d = OBJECT_MAPPER
-				.readValue(IOUtils.toString(getClass().getResourceAsStream("enermaps.json")), Dataset.class);
+			.readValue(IOUtils.toString(getClass().getResourceAsStream("enermaps.json")), Dataset.class);
 
 		JoinedEntity je = new JoinedEntity<>(d);
 

From a9961a183598e77434831b5e24a4c1932a75f6f7 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Wed, 28 Jul 2021 16:21:29 +0200
Subject: [PATCH 058/106] [cleaning] title cleaning based on the
 me.xuender:unidecode library

---
 dhp-common/pom.xml                            |  5 ++
 .../oaf/utils/GraphCleaningFunctions.java     | 19 ++---
 .../schema/oaf/utils/OafMapperUtilsTest.java  | 25 ++++--
 .../dnetlib/dhp/oa/graph/raw/MappersTest.java | 79 ++++++++++---------
 .../eu/dnetlib/dhp/oa/graph/raw/oaf_jairo.xml | 70 ++++++++++++++++
 pom.xml                                       |  5 ++
 6 files changed, 151 insertions(+), 52 deletions(-)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_jairo.xml

diff --git a/dhp-common/pom.xml b/dhp-common/pom.xml
index 74f31cf357..4c7810c47c 100644
--- a/dhp-common/pom.xml
+++ b/dhp-common/pom.xml
@@ -25,6 +25,11 @@
 			<groupId>com.github.sisyphsu</groupId>
 			<artifactId>dateparser</artifactId>
 		</dependency>
+		<dependency>
+			<groupId>me.xuender</groupId>
+			<artifactId>unidecode</artifactId>
+		</dependency>
+
 		<dependency>
 			<groupId>org.apache.spark</groupId>
 			<artifactId>spark-core_2.11</artifactId>
diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
index e5181b1119..1d002ed7ec 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/GraphCleaningFunctions.java
@@ -7,22 +7,19 @@ import java.time.format.DateTimeFormatter;
 import java.time.format.DateTimeParseException;
 import java.util.*;
 import java.util.function.Function;
-import java.util.regex.Matcher;
-import java.util.regex.Pattern;
 import java.util.stream.Collectors;
 import java.util.stream.Stream;
 
 import org.apache.commons.lang3.StringUtils;
-import org.jetbrains.annotations.NotNull;
 
 import com.github.sisyphsu.dateparser.DateParserUtils;
 import com.google.common.collect.Lists;
-import com.google.common.collect.Maps;
 import com.google.common.collect.Sets;
 
 import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.oaf.*;
+import me.xuender.unidecode.Unidecode;
 
 public class GraphCleaningFunctions extends CleaningFunctions {
 
@@ -194,11 +191,15 @@ public class GraphCleaningFunctions extends CleaningFunctions {
 							.filter(Objects::nonNull)
 							.filter(sp -> StringUtils.isNotBlank(sp.getValue()))
 							.filter(
-								sp -> sp
-									.getValue()
-									.toLowerCase()
-									.replaceAll(TITLE_FILTER_REGEX, "")
-									.length() > TITLE_FILTER_RESIDUAL_LENGTH)
+								sp -> {
+									final String title = sp
+										.getValue()
+										.toLowerCase();
+									final String residual = Unidecode
+										.decode(title)
+										.replaceAll(TITLE_FILTER_REGEX, "");
+									return residual.length() > TITLE_FILTER_RESIDUAL_LENGTH;
+								})
 							.map(GraphCleaningFunctions::cleanValue)
 							.collect(Collectors.toList()));
 			}
diff --git a/dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtilsTest.java b/dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtilsTest.java
index eefa1e9a31..8d519a93f6 100644
--- a/dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtilsTest.java
+++ b/dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/OafMapperUtilsTest.java
@@ -4,12 +4,8 @@ package eu.dnetlib.dhp.schema.oaf.utils;
 import static org.junit.jupiter.api.Assertions.*;
 
 import java.io.IOException;
-import java.time.LocalDate;
-import java.time.format.DateTimeFormatter;
 import java.util.HashSet;
 import java.util.List;
-import java.util.Locale;
-import java.util.Optional;
 import java.util.stream.Collectors;
 
 import org.apache.commons.io.IOUtils;
@@ -19,13 +15,32 @@ import com.fasterxml.jackson.databind.DeserializationFeature;
 import com.fasterxml.jackson.databind.ObjectMapper;
 
 import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.oaf.*;
+import eu.dnetlib.dhp.schema.oaf.Dataset;
+import eu.dnetlib.dhp.schema.oaf.KeyValue;
+import eu.dnetlib.dhp.schema.oaf.Publication;
+import eu.dnetlib.dhp.schema.oaf.Result;
+import me.xuender.unidecode.Unidecode;
 
 public class OafMapperUtilsTest {
 
 	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper()
 		.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
 
+	@Test
+	public void testUnidecode() {
+
+		assertEquals("Liu Ben Mu hiruzuSen tawa", Unidecode.decode("六本木ヒルズ森タワ"));
+		assertEquals("Nan Wu A Mi Tuo Fo", Unidecode.decode("南无阿弥陀佛"));
+		assertEquals("Yi Tiao Hui Zou Lu De Yu", Unidecode.decode("一条会走路的鱼"));
+		assertEquals("amidaniyorai", Unidecode.decode("あみだにょらい"));
+		assertEquals("T`owrk`iayi", Unidecode.decode("Թուրքիայի"));
+		assertEquals("Obzor tematiki", Unidecode.decode("Обзор тематики"));
+		assertEquals("GERMANSKIE IaZYKI", Unidecode.decode("ГЕРМАНСКИЕ ЯЗЫКИ"));
+		assertEquals("Diereunese tes ikanopoieses", Unidecode.decode("Διερεύνηση της ικανοποίησης"));
+		assertEquals("lqDy l'wly@", Unidecode.decode("القضايا الأولية"));
+		assertEquals("abc def ghi", Unidecode.decode("abc def ghi"));
+	}
+
 	@Test
 	public void testDateValidation() {
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
index aeeceaeb58..ba4211a3f2 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/MappersTest.java
@@ -1,13 +1,15 @@
 
 package eu.dnetlib.dhp.oa.graph.raw;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
-import eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest;
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.oaf.*;
-import eu.dnetlib.dhp.schema.oaf.utils.PidType;
-import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import static eu.dnetlib.dhp.schema.oaf.utils.GraphCleaningFunctions.cleanup;
+import static eu.dnetlib.dhp.schema.oaf.utils.GraphCleaningFunctions.fixVocabularyNames;
+import static org.junit.jupiter.api.Assertions.*;
+import static org.mockito.Mockito.lenient;
+
+import java.io.IOException;
+import java.util.List;
+import java.util.Optional;
+
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.junit.jupiter.api.BeforeEach;
@@ -16,12 +18,14 @@ import org.junit.jupiter.api.extension.ExtendWith;
 import org.mockito.Mock;
 import org.mockito.junit.jupiter.MockitoExtension;
 
-import java.io.IOException;
-import java.util.List;
-import java.util.Optional;
+import com.fasterxml.jackson.databind.ObjectMapper;
 
-import static org.junit.jupiter.api.Assertions.*;
-import static org.mockito.Mockito.lenient;
+import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
+import eu.dnetlib.dhp.oa.graph.clean.GraphCleaningFunctionsTest;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.oaf.*;
+import eu.dnetlib.dhp.schema.oaf.utils.PidType;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 
 @ExtendWith(MockitoExtension.class)
 public class MappersTest {
@@ -340,7 +344,7 @@ public class MappersTest {
 		assertEquals(2, p.getOriginalId().size());
 
 		assertTrue(p.getOriginalId().stream().anyMatch(oid -> oid.equals("oai:pub.uni-bielefeld.de:2949739")));
-		//assertEquals("oai:pub.uni-bielefeld.de:2949739", p.getOriginalId().get(0));
+		// assertEquals("oai:pub.uni-bielefeld.de:2949739", p.getOriginalId().get(0));
 
 		assertValidId(p.getCollectedfrom().get(0).getKey());
 		assertTrue(p.getAuthor().size() > 0);
@@ -557,31 +561,6 @@ public class MappersTest {
 		assertNotNull(d.getInstance().get(0).getUrl());
 	}
 
-	@Test
-	void testEnermaps() throws IOException {
-		final String xml = IOUtils.toString(getClass().getResourceAsStream("enermaps.xml"));
-		final List<Oaf> list = new OdfToOafMapper(vocs, false, true).processMdRecord(xml);
-
-		System.out.println("***************");
-		System.out.println(new ObjectMapper().writeValueAsString(list));
-		System.out.println("***************");
-
-		assertEquals(1, list.size());
-		assertTrue(list.get(0) instanceof Dataset);
-
-		final Dataset d = (Dataset) list.get(0);
-
-		assertValidId(d.getId());
-		assertValidId(d.getCollectedfrom().get(0).getKey());
-		assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue()));
-		assertEquals(1, d.getAuthor().size());
-		assertEquals(1, d.getInstance().size());
-		assertNotNull(d.getInstance().get(0).getUrl());
-		assertNotNull(d.getContext());
-		assertTrue(StringUtils.isNotBlank(d.getContext().get(0).getId()));
-		assertEquals("enermaps::selection::tgs00004", d.getContext().get(0).getId());
-	}
-
 	@Test
 	void testClaimFromCrossref() throws IOException {
 		final String xml = IOUtils.toString(getClass().getResourceAsStream("oaf_claim_crossref.xml"));
@@ -663,6 +642,30 @@ public class MappersTest {
 		System.out.println(p.getTitle().get(0).getValue());
 	}
 
+	@Test
+	void testJairo() throws IOException {
+		final String xml = IOUtils.toString(getClass().getResourceAsStream("oaf_jairo.xml"));
+		final List<Oaf> list = new OafToOafMapper(vocs, false, true).processMdRecord(xml);
+
+		System.out.println("***************");
+		System.out.println(new ObjectMapper().writeValueAsString(list));
+		System.out.println("***************");
+
+		final Publication p = (Publication) list.get(0);
+		assertValidId(p.getId());
+		assertValidId(p.getCollectedfrom().get(0).getKey());
+
+		assertNotNull(p.getTitle());
+		assertFalse(p.getTitle().isEmpty());
+		assertTrue(p.getTitle().size() == 1);
+		assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
+
+		final Publication p_cleaned = cleanup(fixVocabularyNames(p));
+
+		assertNotNull(p_cleaned.getTitle());
+		assertFalse(p_cleaned.getTitle().isEmpty());
+	}
+
 	@Test
 	void testOdfFromHdfs() throws IOException {
 		final String xml = IOUtils.toString(getClass().getResourceAsStream("odf_from_hdfs.xml"));
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_jairo.xml b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_jairo.xml
new file mode 100644
index 0000000000..9ec696256f
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/oaf_jairo.xml
@@ -0,0 +1,70 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<record xmlns:dc="http://purl.org/dc/elements/1.1/"
+        xmlns:dr="http://www.driver-repository.eu/namespace/dr"
+        xmlns:dri="http://www.driver-repository.eu/namespace/dri"
+        xmlns:oaf="http://namespace.openaire.eu/oaf"
+        xmlns:oai="http://www.openarchives.org/OAI/2.0/"
+        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
+    <header xmlns="http://namespace.openaire.eu/">
+        <dri:objIdentifier>jairo_______::000012e58ed836576ef2a0d38b0f726f</dri:objIdentifier>
+        <dri:recordIdentifier>oai:irdb.nii.ac.jp:01221:0000010198</dri:recordIdentifier>
+        <dri:dateOfCollection/>
+        <dri:mdFormat/>
+        <dri:mdFormatInterpretation/>
+        <dri:repositoryId/>
+        <dr:objectIdentifier/>
+        <dr:dateOfCollection>2021-05-10T11:31:09.424Z</dr:dateOfCollection>
+        <dr:dateOfTransformation>2021-06-03T01:45:42.536Z</dr:dateOfTransformation>
+        <oaf:datasourceprefix>jairo_______</oaf:datasourceprefix>
+    </header>
+    <metadata xmlns="http://namespace.openaire.eu/">
+        <dc:title>多項式GCDを用いた復号法に関する研究</dc:title>
+        <dc:creator>上原, 剛</dc:creator>
+        <dc:creator>甲斐, 博</dc:creator>
+        <dc:creator>野田, 松太郎</dc:creator>
+        <dc:format>application/pdf</dc:format>
+        <dc:identifier>http://hdl.handle.net/2433/25934</dc:identifier>
+        <dc:language>jpn</dc:language>
+        <dc:publisher>京都大学数理解析研究所</dc:publisher>
+        <dc:subject classid="ndc" classname="ndc"
+                    schemeid="dnet:subject_classification_typologies" schemename="dnet:subject_classification_typologies">410</dc:subject>
+        <dc:type>Departmental Bulletin Paper</dc:type>
+        <dr:CobjCategory type="publication">0014</dr:CobjCategory>
+        <oaf:dateAccepted>2004-10-01</oaf:dateAccepted>
+        <oaf:projectid/>
+        <oaf:collectedDatasourceid>openaire____::554c7c2873</oaf:collectedDatasourceid>
+        <oaf:accessrights>OPEN</oaf:accessrights>
+        <oaf:hostedBy id="openaire____::554c7c2873" name="JAIRO"/>
+        <oaf:collectedFrom id="openaire____::554c7c2873" name="JAIRO"/>
+        <oaf:identifier identifierType="handle">2433/25934</oaf:identifier>
+        <oaf:identifier identifierType="ncid">AN00061013</oaf:identifier>
+        <oaf:identifier identifierType="LandingPage">http://hdl.handle.net/2433/25934</oaf:identifier>
+        <oaf:fulltext>http://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/25934/1/1395-16.pdf</oaf:fulltext>
+        <oaf:journal ep="110" iss="" issn="1880-2818" sp="104" vol="1395">数理解析研究所講究録</oaf:journal>
+    </metadata>
+    <about>
+        <provenance xmlns="http://www.openarchives.org/OAI/2.0/provenance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/provenance http://www.openarchives.org/OAI/2.0/provenance.xsd">
+            <originDescription altered="true" harvestDate="2021-05-10T11:31:09.424Z">
+                <baseURL>https%3A%2F%2Firdb.nii.ac.jp%2Foai</baseURL>
+                <identifier>oai:irdb.nii.ac.jp:01221:0000010198</identifier>
+                <datestamp>2021-04-13T13:36:29Z</datestamp>
+                <metadataNamespace/>
+                <originDescription altered="true" harvestDate="2021-04-13T13:36:29Z">
+                    <baseURL>http://repository.kulib.kyoto-u.ac.jp/dspace-oai/request</baseURL>
+                    <identifier>oai:repository.kulib.kyoto-u.ac.jp:2433/25934</identifier>
+                    <datestamp>2012-07-12T14:15:41Z</datestamp>
+                    <metadataNamespace>http://irdb.nii.ac.jp/oai</metadataNamespace>
+                </originDescription>
+            </originDescription>
+        </provenance>
+        <oaf:datainfo>
+            <oaf:inferred>false</oaf:inferred>
+            <oaf:deletedbyinference>false</oaf:deletedbyinference>
+            <oaf:trust>0.9</oaf:trust>
+            <oaf:inferenceprovenance/>
+            <oaf:provenanceaction classid="sysimport:crosswalk:repository"
+                                  classname="sysimport:crosswalk:repository"
+                                  schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions"/>
+        </oaf:datainfo>
+    </about>
+</record>
\ No newline at end of file
diff --git a/pom.xml b/pom.xml
index 19d00d6375..075a45c9f6 100644
--- a/pom.xml
+++ b/pom.xml
@@ -205,6 +205,11 @@
 				<artifactId>dateparser</artifactId>
 				<version>1.0.7</version>
 			</dependency>
+			<dependency>
+				<groupId>me.xuender</groupId>
+				<artifactId>unidecode</artifactId>
+				<version>0.0.7</version>
+			</dependency>
 
 			<dependency>
 				<groupId>com.google.guava</groupId>

From 1923c1ce21658c05e9822c9363a3509e4b63eb32 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 29 Jul 2021 11:36:20 +0200
Subject: [PATCH 059/106] replaced full join + filtering with a left join

---
 .../dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
index 151f5ba3f9..c2bcf69f09 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
@@ -80,8 +80,7 @@ public class PatchRelationsApplication {
         final Dataset<RelationIdMapping> idMapping = Utils.readPath(spark, idMappingPath, RelationIdMapping.class);
 
         rels
-                .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "full")
-                .filter((FilterFunction<Tuple2<Relation, RelationIdMapping>>) t -> Objects.nonNull(t._1()))
+                .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "left")
                 .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
                     final Relation r = t._1();
                     Optional.ofNullable(t._2())
@@ -89,8 +88,7 @@ public class PatchRelationsApplication {
                             .ifPresent(r::setSource);
                     return r;
                 }, Encoders.bean(Relation.class))
-                .joinWith(idMapping, rels.col("target").equalTo(idMapping.col("oldId")), "full")
-                .filter((FilterFunction<Tuple2<Relation, RelationIdMapping>>) t -> Objects.nonNull(t._1()))
+                .joinWith(idMapping, rels.col("target").equalTo(idMapping.col("oldId")), "left")
                 .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
                     final Relation r = t._1();
                     Optional.ofNullable(t._2())

From e725c88ebb6eedea235abfc07af932756c9e2397 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 29 Jul 2021 13:03:16 +0200
Subject: [PATCH 060/106] [raw_all] patching relation identifier phase to be
 run at the end, i.e. includes also claimed relations

---
 .../oa/graph/raw_all/oozie_app/workflow.xml   | 75 +++++++++----------
 1 file changed, 37 insertions(+), 38 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index e7320de3b3..321ca40909 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -548,42 +548,7 @@
         <error to="Kill"/>
     </action>
 
-    <join name="wait_graphs" to="patchRelations"/>
-
-    <decision name="decisionPatchRelations">
-        <switch>
-            <case to="patchRelations">
-                ${(shouldPatchRelations eq "true") and
-                (fs:exists(concat(concat(wf:conf('nameNode'),'/'),wf:conf('idMappingPath'))) eq "true")}
-            </case>
-            <default to="fork_merge_claims"/>
-        </switch>
-    </decision>
-
-    <action name="patchRelations">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>PatchRelations</name>
-            <class>eu.dnetlib.dhp.oa.graph.raw.PatchRelationsApplication</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory ${sparkExecutorMemory}
-                --executor-cores ${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-                --conf spark.sql.shuffle.partitions=7680
-            </spark-opts>
-            <arg>--graphBasePath</arg><arg>${workingDir}/graph_raw</arg>
-            <arg>--workingDir</arg><arg>${workingDir}/patch_relations</arg>
-            <arg>--idMappingPath</arg><arg>${idMappingPath}</arg>
-        </spark>
-        <ok to="fork_merge_claims"/>
-        <error to="Kill"/>
-    </action>
+    <join name="wait_graphs" to="fork_merge_claims"/>
 
     <fork name="fork_merge_claims">
         <path start="merge_claims_publication"/>
@@ -596,7 +561,6 @@
         <path start="merge_claims_relation"/>
     </fork>
 
-
     <action name="merge_claims_publication">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn</master>
@@ -805,7 +769,42 @@
         <error to="Kill"/>
     </action>
 
-    <join name="wait_merge" to="End"/>
+    <join name="wait_merge" to="decisionPatchRelations"/>
+
+    <decision name="decisionPatchRelations">
+        <switch>
+            <case to="patchRelations">
+                ${(shouldPatchRelations eq "true") and
+                (fs:exists(concat(concat(wf:conf('nameNode'),'/'),wf:conf('idMappingPath'))) eq "true")}
+            </case>
+            <default to="End"/>
+        </switch>
+    </decision>
+
+    <action name="patchRelations">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>PatchRelations</name>
+            <class>eu.dnetlib.dhp.oa.graph.raw.PatchRelationsApplication</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory ${sparkExecutorMemory}
+                --executor-cores ${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+                --conf spark.sql.shuffle.partitions=7680
+            </spark-opts>
+            <arg>--graphBasePath</arg><arg>${graphOutputPath}</arg>
+            <arg>--workingDir</arg><arg>${workingDir}/patch_relations</arg>
+            <arg>--idMappingPath</arg><arg>${idMappingPath}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
 
     <end name="End"/>
 </workflow-app>
\ No newline at end of file

From 6e3554a45e4ac1598b3a6177c9d3a85f687b7325 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 29 Jul 2021 13:56:37 +0200
Subject: [PATCH 061/106] [provision] lowercase relation filter

---
 .../java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java
index 7d53d35549..b3f7854924 100644
--- a/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java
+++ b/dhp-workflows/dhp-graph-provision/src/main/java/eu/dnetlib/dhp/oa/provision/PrepareRelationsJob.java
@@ -10,6 +10,7 @@ import java.util.Set;
 import java.util.stream.Collectors;
 
 import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
@@ -81,6 +82,7 @@ public class PrepareRelationsJob {
 
 		Set<String> relationFilter = Optional
 			.ofNullable(parser.get("relationFilter"))
+			.map(String::toLowerCase)
 			.map(s -> Sets.newHashSet(Splitter.on(",").split(s)))
 			.orElse(new HashSet<>());
 		log.info("relationFilter: {}", relationFilter);
@@ -130,7 +132,7 @@ public class PrepareRelationsJob {
 
 		JavaRDD<Relation> rels = readPathRelationRDD(spark, inputRelationsPath)
 			.filter(rel -> rel.getDataInfo().getDeletedbyinference() == false)
-			.filter(rel -> relationFilter.contains(rel.getRelClass()) == false);
+			.filter(rel -> relationFilter.contains(StringUtils.lowerCase(rel.getRelClass())) == false);
 
 		JavaRDD<Relation> pruned = pruneRels(
 			pruneRels(

From 576693d782d2ff51908168a519f19a4f70097136 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Fri, 30 Jul 2021 10:13:33 +0200
Subject: [PATCH 062/106] added unit test for PatchRelationsApplication

---
 .../graph/raw/PatchRelationsApplication.java  |  3 +
 .../raw/PatchRelationApplicationTest.java     | 89 +++++++++++++++++++
 .../dnetlib/dhp/oa/graph/raw/id_mapping.json  |  5 ++
 .../dhp/oa/graph/raw/relations_to_patch.json  |  6 ++
 4 files changed, 103 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/id_mapping.json
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
index c2bcf69f09..dddc53bc8e 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
@@ -79,6 +79,9 @@ public class PatchRelationsApplication {
         final Dataset<Relation> rels = Utils.readPath(spark, relationPath, Relation.class);
         final Dataset<RelationIdMapping> idMapping = Utils.readPath(spark, idMappingPath, RelationIdMapping.class);
 
+        log.info("relations: {}", rels.count());
+        log.info("idMapping: {}", idMapping.count());
+
         rels
                 .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "left")
                 .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
new file mode 100644
index 0000000000..def53c085e
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
@@ -0,0 +1,89 @@
+package eu.dnetlib.dhp.oa.graph.raw;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import org.apache.commons.io.FileUtils;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.io.IOException;
+import java.nio.file.Files;
+import java.nio.file.Path;
+import java.util.Optional;
+
+public class PatchRelationApplicationTest {
+
+    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+    public static final String ID_MAPPING_PATH = "map/id_mapping.json";
+
+    private static SparkSession spark;
+
+    private static Path workingDir;
+
+    private static final Logger log = LoggerFactory.getLogger(PatchRelationApplicationTest.class);
+
+    @BeforeAll
+    public static void beforeAll() throws IOException {
+        workingDir = Files
+                .createTempDirectory(PatchRelationApplicationTest.class.getSimpleName());
+        log.info("using work dir {}", workingDir);
+
+        SparkConf conf = new SparkConf();
+        conf.setAppName(PatchRelationApplicationTest.class.getSimpleName());
+
+        conf.setMaster("local[*]");
+        conf.set("spark.driver.host", "localhost");
+        conf.set("hive.metastore.local", "true");
+        conf.set("spark.ui.enabled", "false");
+        conf.set("spark.sql.warehouse.dir", workingDir.toString());
+        conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+
+        spark = SparkSession
+                .builder()
+                .appName(PatchRelationApplicationTest.class.getSimpleName())
+                .config(conf)
+                .getOrCreate();
+
+        FileUtils.copyInputStreamToFile(
+                PatchRelationApplicationTest.class.getResourceAsStream("id_mapping.json"),
+                workingDir.resolve(ID_MAPPING_PATH).toFile()
+        );
+
+        FileUtils.copyInputStreamToFile(
+                PatchRelationApplicationTest.class.getResourceAsStream("relations_to_patch.json"),
+                workingDir.resolve("graphBasePath/relation/rels.json").toFile()
+        );
+
+    }
+
+    @BeforeEach
+    public void setUp() throws IOException {
+
+
+    }
+
+    @AfterAll
+    public static void afterAll() throws IOException {
+        FileUtils.deleteDirectory(workingDir.toFile());
+        spark.stop();
+    }
+
+    @Test
+    public void testPatchRelationApplication() throws Exception {
+
+        PatchRelationsApplication.main(new String[] {
+                "-isSparkSessionManaged", Boolean.FALSE.toString(),
+                "-graphBasePath", workingDir.toString() + "/graphBasePath",
+                "-workingDir", workingDir.toString() + "/workingDir",
+                "-idMappingPath", workingDir.toString() + "/" + ID_MAPPING_PATH
+        });
+
+    }
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/id_mapping.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/id_mapping.json
new file mode 100644
index 0000000000..640d042b1d
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/id_mapping.json
@@ -0,0 +1,5 @@
+{"oldId": "1a", "newId": "1b"}
+{"oldId": "2a", "newId": "2b"}
+{"oldId": "3a", "newId": "3b"}
+{"oldId": "4a", "newId": "4b"}
+{"oldId": "5a", "newId": "5b"}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json
new file mode 100644
index 0000000000..3e1203b183
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json
@@ -0,0 +1,6 @@
+{"source":"1a","target":"10a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"10a","target":"1a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"2a","target":"20a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"20a","target":"2a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"15a","target":"25a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"25a","target":"15a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}

From 9bc4fd3b69981716c6a6b96b1234871539bf2f79 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Fri, 30 Jul 2021 10:34:05 +0200
Subject: [PATCH 063/106] Patch FCT relations - fixed issue with join

---
 .../dhp/oa/graph/raw/PatchRelationsApplication.java        | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
index dddc53bc8e..5bbc8a975d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
@@ -82,7 +82,7 @@ public class PatchRelationsApplication {
         log.info("relations: {}", rels.count());
         log.info("idMapping: {}", idMapping.count());
 
-        rels
+        Dataset<Relation> fj = rels
                 .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "left")
                 .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
                     final Relation r = t._1();
@@ -90,8 +90,9 @@ public class PatchRelationsApplication {
                             .map(RelationIdMapping::getNewId)
                             .ifPresent(r::setSource);
                     return r;
-                }, Encoders.bean(Relation.class))
-                .joinWith(idMapping, rels.col("target").equalTo(idMapping.col("oldId")), "left")
+                }, Encoders.bean(Relation.class));
+
+        fj.joinWith(idMapping, fj.col("target").equalTo(idMapping.col("oldId")), "left")
                 .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
                     final Relation r = t._1();
                     Optional.ofNullable(t._2())

From a6a38cca9ec383e992cbafe82b30159f573e3f2b Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Fri, 30 Jul 2021 11:06:11 +0200
Subject: [PATCH 064/106] fixed implementation of PatchRelationsApplication,
 refined the relative unit test

---
 .../graph/raw/PatchRelationsApplication.java  | 181 +++++++++---------
 .../graph/raw/common/RelationIdMapping.java   |  29 +--
 .../raw/PatchRelationApplicationTest.java     | 148 ++++++++------
 .../dhp/oa/graph/raw/relations_to_patch.json  |   2 +-
 4 files changed, 198 insertions(+), 162 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
index dddc53bc8e..5523863ff0 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationsApplication.java
@@ -1,10 +1,12 @@
+
 package eu.dnetlib.dhp.oa.graph.raw;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.oa.graph.dump.Utils;
-import eu.dnetlib.dhp.oa.graph.raw.common.RelationIdMapping;
-import eu.dnetlib.dhp.schema.oaf.Relation;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+import java.io.FileNotFoundException;
+import java.util.Objects;
+import java.util.Optional;
+
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.FilterFunction;
@@ -15,104 +17,111 @@ import org.apache.spark.sql.SaveMode;
 import org.apache.spark.sql.SparkSession;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.oa.graph.raw.common.RelationIdMapping;
+import eu.dnetlib.dhp.schema.oaf.Relation;
 import scala.Tuple2;
 
-import java.io.FileNotFoundException;
-import java.util.Objects;
-import java.util.Optional;
-
-import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
-
 public class PatchRelationsApplication {
 
-    private static final Logger log = LoggerFactory.getLogger(PatchRelationsApplication.class);
+	private static final Logger log = LoggerFactory.getLogger(PatchRelationsApplication.class);
 
-    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
 
-    public static void main(final String[] args) throws Exception {
-        final ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                Optional.ofNullable(
-                                PatchRelationsApplication.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json"))
-                                .orElseThrow(FileNotFoundException::new)
-                        ));
-        parser.parseArgument(args);
+	public static void main(final String[] args) throws Exception {
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					Optional
+						.ofNullable(
+							PatchRelationsApplication.class
+								.getResourceAsStream(
+									"/eu/dnetlib/dhp/oa/graph/patch_relations_parameters.json"))
+						.orElseThrow(FileNotFoundException::new)));
+		parser.parseArgument(args);
 
-        final Boolean isSparkSessionManaged = Optional
-                .ofNullable(parser.get("isSparkSessionManaged"))
-                .map(Boolean::valueOf)
-                .orElse(Boolean.TRUE);
-        log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+		final Boolean isSparkSessionManaged = Optional
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
 
-        final String graphBasePath = parser.get("graphBasePath");
-        log.info("graphBasePath: {}", graphBasePath);
+		final String graphBasePath = parser.get("graphBasePath");
+		log.info("graphBasePath: {}", graphBasePath);
 
-        final String workingDir = parser.get("workingDir");
-        log.info("workingDir: {}", workingDir);
+		final String workingDir = parser.get("workingDir");
+		log.info("workingDir: {}", workingDir);
 
-        final String idMappingPath = parser.get("idMappingPath");
-        log.info("idMappingPath: {}", idMappingPath);
+		final String idMappingPath = parser.get("idMappingPath");
+		log.info("idMappingPath: {}", idMappingPath);
 
-        final SparkConf conf = new SparkConf();
-        runWithSparkSession(
-                conf,
-                isSparkSessionManaged,
-                spark -> patchRelations(spark, graphBasePath, workingDir, idMappingPath));
-    }
+		final SparkConf conf = new SparkConf();
+		runWithSparkSession(
+			conf,
+			isSparkSessionManaged,
+			spark -> patchRelations(spark, graphBasePath, workingDir, idMappingPath));
+	}
 
-    /**
-     * Substitutes the identifiers (source/target) from the set of relations part of the graphBasePath included in the
-     * mapping provided by the dataset stored on idMappingPath, using workingDir as intermediate storage location.
-     *
-     * @param spark the SparkSession
-     * @param graphBasePath base graph path providing the set of relations to patch
-     * @param workingDir intermediate storage location
-     * @param idMappingPath dataset providing the old -> new identifier mapping
-     */
-    private static void patchRelations(final SparkSession spark, final String graphBasePath, final String workingDir, final String idMappingPath) {
+	/**
+	 * Substitutes the identifiers (source/target) from the set of relations part of the graphBasePath included in the
+	 * mapping provided by the dataset stored on idMappingPath, using workingDir as intermediate storage location.
+	 *
+	 * @param spark the SparkSession
+	 * @param graphBasePath base graph path providing the set of relations to patch
+	 * @param workingDir intermediate storage location
+	 * @param idMappingPath dataset providing the old -> new identifier mapping
+	 */
+	private static void patchRelations(final SparkSession spark, final String graphBasePath, final String workingDir,
+		final String idMappingPath) {
 
-        final String relationPath = graphBasePath + "/relation";
+		final String relationPath = graphBasePath + "/relation";
 
-        final Dataset<Relation> rels = Utils.readPath(spark, relationPath, Relation.class);
-        final Dataset<RelationIdMapping> idMapping = Utils.readPath(spark, idMappingPath, RelationIdMapping.class);
+		final Dataset<Relation> rels = Utils.readPath(spark, relationPath, Relation.class);
+		final Dataset<RelationIdMapping> idMapping = Utils.readPath(spark, idMappingPath, RelationIdMapping.class);
 
-        log.info("relations: {}", rels.count());
-        log.info("idMapping: {}", idMapping.count());
+		log.info("relations: {}", rels.count());
+		log.info("idMapping: {}", idMapping.count());
 
-        rels
-                .joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "left")
-                .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
-                    final Relation r = t._1();
-                    Optional.ofNullable(t._2())
-                            .map(RelationIdMapping::getNewId)
-                            .ifPresent(r::setSource);
-                    return r;
-                }, Encoders.bean(Relation.class))
-                .joinWith(idMapping, rels.col("target").equalTo(idMapping.col("oldId")), "left")
-                .map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
-                    final Relation r = t._1();
-                    Optional.ofNullable(t._2())
-                            .map(RelationIdMapping::getNewId)
-                            .ifPresent(r::setTarget);
-                    return r;
-                }, Encoders.bean(Relation.class))
-                .map(
-                        (MapFunction<Relation, String>) OBJECT_MAPPER::writeValueAsString,
-                        Encoders.STRING())
-                .write()
-                .mode(SaveMode.Overwrite)
-                .option("compression", "gzip")
-                .text(workingDir);
+		final Dataset<Relation> bySource = rels
+			.joinWith(idMapping, rels.col("source").equalTo(idMapping.col("oldId")), "left")
+			.map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
+				final Relation r = t._1();
+				Optional
+					.ofNullable(t._2())
+					.map(RelationIdMapping::getNewId)
+					.ifPresent(r::setSource);
+				return r;
+			}, Encoders.bean(Relation.class));
 
-        spark.read().textFile(workingDir)
-                .write()
-                .mode(SaveMode.Overwrite)
-                .option("compression", "gzip")
-                .text(relationPath);
-    }
+		bySource
+			.joinWith(idMapping, bySource.col("target").equalTo(idMapping.col("oldId")), "left")
+			.map((MapFunction<Tuple2<Relation, RelationIdMapping>, Relation>) t -> {
+				final Relation r = t._1();
+				Optional
+					.ofNullable(t._2())
+					.map(RelationIdMapping::getNewId)
+					.ifPresent(r::setTarget);
+				return r;
+			}, Encoders.bean(Relation.class))
+			.map(
+				(MapFunction<Relation, String>) OBJECT_MAPPER::writeValueAsString,
+				Encoders.STRING())
+			.write()
+			.mode(SaveMode.Overwrite)
+			.option("compression", "gzip")
+			.text(workingDir);
 
+		spark
+			.read()
+			.textFile(workingDir)
+			.write()
+			.mode(SaveMode.Overwrite)
+			.option("compression", "gzip")
+			.text(relationPath);
+	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
index f251da8c33..d5852ab709 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/RelationIdMapping.java
@@ -1,24 +1,25 @@
+
 package eu.dnetlib.dhp.oa.graph.raw.common;
 
 public class RelationIdMapping {
 
-    private String oldId;
+	private String oldId;
 
-    private String newId;
+	private String newId;
 
-    public String getOldId() {
-        return oldId;
-    }
+	public String getOldId() {
+		return oldId;
+	}
 
-    public void setOldId(final String oldId) {
-        this.oldId = oldId;
-    }
+	public void setOldId(final String oldId) {
+		this.oldId = oldId;
+	}
 
-    public String getNewId() {
-        return newId;
-    }
+	public String getNewId() {
+		return newId;
+	}
 
-    public void setNewId(final String newId) {
-        this.newId = newId;
-    }
+	public void setNewId(final String newId) {
+		this.newId = newId;
+	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
index def53c085e..3fd3654161 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/raw/PatchRelationApplicationTest.java
@@ -1,89 +1,115 @@
+
 package eu.dnetlib.dhp.oa.graph.raw;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import org.apache.commons.io.FileUtils;
-import org.apache.commons.io.IOUtils;
-import org.apache.spark.SparkConf;
-import org.apache.spark.sql.SparkSession;
-import org.junit.jupiter.api.AfterAll;
-import org.junit.jupiter.api.BeforeAll;
-import org.junit.jupiter.api.BeforeEach;
-import org.junit.jupiter.api.Test;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
+import static org.junit.jupiter.api.Assertions.assertEquals;
 
 import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
-import java.util.Optional;
+import java.util.List;
+
+import org.apache.commons.io.FileUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SparkSession;
+import org.junit.jupiter.api.AfterAll;
+import org.junit.jupiter.api.BeforeAll;
+import org.junit.jupiter.api.Test;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.schema.oaf.Relation;
 
 public class PatchRelationApplicationTest {
 
-    private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
-    public static final String ID_MAPPING_PATH = "map/id_mapping.json";
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+	public static final String ID_MAPPING_PATH = "map/id_mapping.json";
 
-    private static SparkSession spark;
+	private static SparkSession spark;
 
-    private static Path workingDir;
+	private static Path workingDir;
 
-    private static final Logger log = LoggerFactory.getLogger(PatchRelationApplicationTest.class);
+	private static final Logger log = LoggerFactory.getLogger(PatchRelationApplicationTest.class);
 
-    @BeforeAll
-    public static void beforeAll() throws IOException {
-        workingDir = Files
-                .createTempDirectory(PatchRelationApplicationTest.class.getSimpleName());
-        log.info("using work dir {}", workingDir);
+	@BeforeAll
+	public static void beforeAll() throws IOException {
+		workingDir = Files
+			.createTempDirectory(PatchRelationApplicationTest.class.getSimpleName());
+		log.info("using work dir {}", workingDir);
 
-        SparkConf conf = new SparkConf();
-        conf.setAppName(PatchRelationApplicationTest.class.getSimpleName());
+		SparkConf conf = new SparkConf();
+		conf.setAppName(PatchRelationApplicationTest.class.getSimpleName());
 
-        conf.setMaster("local[*]");
-        conf.set("spark.driver.host", "localhost");
-        conf.set("hive.metastore.local", "true");
-        conf.set("spark.ui.enabled", "false");
-        conf.set("spark.sql.warehouse.dir", workingDir.toString());
-        conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
+		conf.setMaster("local[*]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.toString());
+		conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
 
-        spark = SparkSession
-                .builder()
-                .appName(PatchRelationApplicationTest.class.getSimpleName())
-                .config(conf)
-                .getOrCreate();
+		spark = SparkSession
+			.builder()
+			.appName(PatchRelationApplicationTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
 
-        FileUtils.copyInputStreamToFile(
-                PatchRelationApplicationTest.class.getResourceAsStream("id_mapping.json"),
-                workingDir.resolve(ID_MAPPING_PATH).toFile()
-        );
+		FileUtils
+			.copyInputStreamToFile(
+				PatchRelationApplicationTest.class.getResourceAsStream("id_mapping.json"),
+				workingDir.resolve(ID_MAPPING_PATH).toFile());
 
-        FileUtils.copyInputStreamToFile(
-                PatchRelationApplicationTest.class.getResourceAsStream("relations_to_patch.json"),
-                workingDir.resolve("graphBasePath/relation/rels.json").toFile()
-        );
+		FileUtils
+			.copyInputStreamToFile(
+				PatchRelationApplicationTest.class.getResourceAsStream("relations_to_patch.json"),
+				workingDir.resolve("graphBasePath/relation/rels.json").toFile());
 
-    }
+	}
 
-    @BeforeEach
-    public void setUp() throws IOException {
+	@AfterAll
+	public static void afterAll() throws IOException {
+		FileUtils.deleteDirectory(workingDir.toFile());
+		spark.stop();
+	}
 
+	@Test
+	public void testPatchRelationApplication() throws Exception {
 
-    }
+		final String graphBasePath = workingDir.toString() + "/graphBasePath";
+		PatchRelationsApplication.main(new String[] {
+			"-isSparkSessionManaged", Boolean.FALSE.toString(),
+			"-graphBasePath", graphBasePath,
+			"-workingDir", workingDir.toString() + "/workingDir",
+			"-idMappingPath", workingDir.toString() + "/" + ID_MAPPING_PATH
+		});
 
-    @AfterAll
-    public static void afterAll() throws IOException {
-        FileUtils.deleteDirectory(workingDir.toFile());
-        spark.stop();
-    }
+		final List<Relation> rels = spark
+			.read()
+			.textFile(graphBasePath + "/relation")
+			.map(
+				(MapFunction<String, Relation>) s -> OBJECT_MAPPER.readValue(s, Relation.class),
+				Encoders.bean(Relation.class))
+			.collectAsList();
 
-    @Test
-    public void testPatchRelationApplication() throws Exception {
+		assertEquals(6, rels.size());
 
-        PatchRelationsApplication.main(new String[] {
-                "-isSparkSessionManaged", Boolean.FALSE.toString(),
-                "-graphBasePath", workingDir.toString() + "/graphBasePath",
-                "-workingDir", workingDir.toString() + "/workingDir",
-                "-idMappingPath", workingDir.toString() + "/" + ID_MAPPING_PATH
-        });
+		assertEquals(0, getCount(rels, "1a"), "should be patched to 1b");
+		assertEquals(0, getCount(rels, "2a"), "should be patched to 2b");
 
-    }
+		assertEquals(2, getCount(rels, "10a"), "not included in patching");
+		assertEquals(2, getCount(rels, "20a"), "not included in patching");
+
+		assertEquals(2, getCount(rels, "15a"), "not included in patching");
+		assertEquals(2, getCount(rels, "25a"), "not included in patching");
+
+		assertEquals(2, getCount(rels, "1b"), "patched from 1a");
+		assertEquals(2, getCount(rels, "2b"), "patched from 2a");
+	}
+
+	private long getCount(List<Relation> rels, final String id) {
+		return rels.stream().filter(r -> r.getSource().equals(id) || r.getTarget().equals(id)).count();
+	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json
index 3e1203b183..31755c53d5 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/raw/relations_to_patch.json
@@ -3,4 +3,4 @@
 {"source":"2a","target":"20a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
 {"source":"20a","target":"2a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
 {"source":"15a","target":"25a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
-{"source":"25a","target":"15a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
+{"source":"25a","target":"15a","collectedfrom":[{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1626336932282,"relType":"datasourceOrganization","subRelType":"provision","relClass":"provides","validated":false,"validationDate":null,"properties":[]}
\ No newline at end of file

From 11e26c020a85b874bec96e870cd9856c7a204000 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Fri, 30 Jul 2021 11:54:13 +0200
Subject: [PATCH 065/106] Update 'README.md'

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 39d4d98e4a..0a0bd82ab5 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,2 @@
 # dnet-hadoop
-Dnet-hadoop is a tool for
\ No newline at end of file
+Dnet-hadoop is the project that defined all the OOZIE workflows for the OpenAIRE Graph construction, processing, provisioning.
\ No newline at end of file

From 74afe43c3abaca564998f3bf91840276c03d4c85 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 4 Aug 2021 10:16:17 +0200
Subject: [PATCH 066/106] fixed wrong test file

---
 .../eu/dnetlib/dhp/sx/graph/oaf_to_summary    | 30 +++++++------------
 1 file changed, 10 insertions(+), 20 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/sx/graph/oaf_to_summary b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/sx/graph/oaf_to_summary
index 4d581044a2..e1fd758b41 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/sx/graph/oaf_to_summary
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/sx/graph/oaf_to_summary
@@ -1,20 +1,10 @@
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::0f2129f0a8ddfb099b9fabba3105245f","target":"50|doi_________::4af011e641e0ba286660fd24a3f603b7","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2018-01-01","dataInfo":null}]}
-{"id":"50|doi_________::0f2129f0a8ddfb099b9fabba3105245f","localIdentifier":[{"identifier":"10.1111/1346-8138.14162","schema":"doi","url":"http://onlinelibrary.wiley.com/wol1/doi/10.1111/1346-8138.14162/fullpdf"}],"typology":"publication","subType":"Article","title":["Guideline of SSc","Diagnostic criteria, severity classification and guidelines of systemic sclerosis"],"author":["Yoshihide Asano","Masatoshi Jinnin","Yasushi Kawaguchi","Masataka Kuwana","Daisuke Goto","Shinichi Sato","Kazuhiko Takehara","Masaru Hatano","Manabu Fujimoto","Naoki Mugii","Hironobu Ihn"],"date":["2018-04-23","2018-01-01"],"subject":null,"publisher":["Wiley"],"relatedPublications":0,"relatedDatasets":0,"relatedUnknown":0,"datasources":[{"datasourceName":"Crossref","datasourceId":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","completionStatus":"complete"},{"datasourceName":"Datacite","datasourceId":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","completionStatus":"complete"}],"abstract":null}
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::1b57d5ebe71734c1fa98624d9609971e","target":"50|doi_________::7e79063f205480e61ee7fdcf7ab03bad","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2004-11-01","dataInfo":null}]}
-{"id":"50|doi_________::1b57d5ebe71734c1fa98624d9609971e","localIdentifier":[{"identifier":"10.1002/ajmg.a.30270","schema":"doi","url":"https://onlinelibrary.wiley.com/doi/full/10.1002/ajmg.a.30270"}],"typology":"publication","subType":"Article","title":["Clinical variability in a Noonan syndrome family with a newPTPN11 gene mutation"],"author":["D�bora Romeo Bertola","Alexandre C. Pereira","Paulo S.L. de Oliveira","Chong A. Kim","Jos� Eduardo Krieger"],"date":["2004-09-21T23:19:41Z","2004-11-01"],"subject":[{"scheme":"keywords","value":"Genetics(clinical)"}],"publisher":["Wiley"],"relatedPublications":0,"relatedDatasets":0,"relatedUnknown":0,"datasources":[{"datasourceName":"Crossref","datasourceId":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","completionStatus":"complete"},{"datasourceName":"Datacite","datasourceId":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","completionStatus":"complete"}],"abstract":null}
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::3d6b9e4f51325f7f17b6809513812a43","target":"50|doi_________::edb21431e0271061e0dddc248300708a","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2010-08-16","dataInfo":null}]}
-{"id":"50|doi_________::3d6b9e4f51325f7f17b6809513812a43","localIdentifier":[{"identifier":"10.1111/j.1440-1843.2010.01819.x","schema":"doi","url":"http://onlinelibrary.wiley.com/wol1/doi/10.1111/j.1440-1843.2010.01819.x/fullpdf"}],"typology":"publication","subType":"Article","title":["P. aeruginosa: host defence in the lung","Pseudomonas aeruginosa: Host defence in lung diseases"],"author":["Bryan J. WILLIAMS","Joanne DEHNBOSTEL","Timothy S. BLACKWELL"],"date":["2010-08-16"],"subject":[{"scheme":"keywords","value":"Pulmonary and Respiratory Medicine"}],"publisher":["Wiley"],"relatedPublications":0,"relatedDatasets":0,"relatedUnknown":0,"datasources":[{"datasourceName":"Crossref","datasourceId":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","completionStatus":"complete"},{"datasourceName":"Datacite","datasourceId":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","completionStatus":"complete"}],"abstract":null}
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::3f441c6243fd6ae381c520b42349b769","target":"50|doi_________::44ebec98169daae57c106eb1a1072aae","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2018-07-12","dataInfo":null}]}
-{"id":"50|doi_________::3f441c6243fd6ae381c520b42349b769","localIdentifier":[{"identifier":"10.1007/s11901-018-0414-x","schema":"doi","url":"http://link.springer.com/article/10.1007/s11901-018-0414-x/fulltext.html"}],"typology":"publication","subType":"Article","title":["DILI Associated with Skin Reactions"],"author":["Sahand Rahnama-Moghadam","Hans L. Tillmann"],"date":["2018-07-12"],"subject":null,"publisher":["Springer Science and Business Media LLC"],"relatedPublications":0,"relatedDatasets":0,"relatedUnknown":0,"datasources":[{"datasourceName":"Crossref","datasourceId":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","completionStatus":"complete"},{"datasourceName":"Datacite","datasourceId":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","completionStatus":"complete"}],"abstract":null}
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::3f73d349736eb476653a026d14222b12","target":"50|pmid________::ff99f7ec03946fa4c8f413d59f75a547","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2003-01-01","dataInfo":null}]}
-{"id":"50|doi_________::3f73d349736eb476653a026d14222b12","localIdentifier":[{"identifier":"10.1002/lsm.10225","schema":"doi","url":"https://dx.doi.org/10.1002/lsm.10225"}],"typology":"publication","subType":"Article","title":["Multicenter study of noninvasive radiofrequency for periorbital tissue tightening"],"author":["Fitzpatrick, Richard","Geronemus, Roy","Goldberg, David","Kaminer, Michael","Kilmer, Suzanne","Ruiz-Esparza, Javier"],"date":["2003-01-01","2003-10-17T12:03:53Z"],"subject":[{"scheme":"keywords","value":"Surgery"},{"scheme":"keywords","value":"Dermatology"}],"publisher":["Wiley"],"relatedPublications":0,"relatedDatasets":0,"relatedUnknown":0,"datasources":[{"datasourceName":"Datacite","datasourceId":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","completionStatus":"complete"},{"datasourceName":"Crossref","datasourceId":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","completionStatus":"complete"}],"abstract":null}
-{"collectedfrom":[{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":null,"relType":"resultResult","subRelType":"relationship","relClass":"References","source":"50|doi_________::3f73d349736eb476653a026d14222b12","target":"50|pmid________::f767374d588a8d51de0f129261daa5a7","validated":false,"validationDate":null,"properties":[{"key":"RelationDate","value":"2003-01-01","dataInfo":null}]}
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These results indicated that these compounds with the twisted naphthalene bridged bis-triphenylamine core could show stable deep-blue electroluminescence properties and introducing the electron-donating group (–OCH <sub>3</sub> ) could enable high luminance and current efficiency for OLEDs.","dataInfo":null}],"dateofacceptance":{"value":"2019-01-29T03:05:29Z","dataInfo":null},"publisher":{"value":"Royal Society of Chemistry (RSC)","dataInfo":null},"embargoenddate":null,"source":[{"value":"Crossref","dataInfo":null}],"fulltext":[],"format":[],"contributor":[],"resourcetype":{"classid":"0001","classname":"0001","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"coverage":[],"bestaccessright":null,"context":[],"externalReference":[],"instance":[{"license":{"value":"http://rsc.li/journals-terms-of-use","dataInfo":null},"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":null,"url":["http://pubs.rsc.org/en/content/articlepdf/2019/TC/C8TC05911J","http://dx.doi.org/10.1039/c8tc05911j"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref","dataInfo":null},"pid":[{"value":"10.1039/c8tc05911j","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":null}],"alternateIdentifier":null,"dateofacceptance":{"value":"2019-01-29T03:05:29Z","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null},{"license":null,"accessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository","dataInfo":null},"url":["https://dx.doi.org/10.1039/c8tc05911j"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null},"pid":[{"value":"10.1039/c8tc05911j","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"alternateIdentifier":null,"dateofacceptance":{"value":"2019-01-01","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null}],"journal":{"name":"Journal of Materials Chemistry C","issnPrinted":"2050-7526","issnOnline":"2050-7534","issnLinking":null,"ep":"2698","iss":null,"sp":"2686","vol":"7","edition":null,"conferenceplace":null,"conferencedate":null,"dataInfo":null}}
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We first unravel misconceptions as perceived on different continents and subsequently present a revised interpretation of the identity and typification of three European taxa at species level: <jats:italic>Ruppia maritima</jats:italic> L., <jats:italic>Ruppia spiralis</jats:italic> L. ex Dumortier, and <jats:italic>Ruppia cirrhosa</jats:italic> (Petagna) Grande. To do this, historical specimens, illustrations and original descriptions were studied. We supersede a previous choice of the figure of <jats:italic>Buccaferrea maritima, foliis minus acutis</jats:italic> Micheli (1729) as the lectotype of <jats:italic>R. maritima</jats:italic> and type species of the genus <jats:italic>Ruppia</jats:italic> owing to a serious conflict with the protologue. Based on a meticulous interpretation of protologues and figures in a historical context, we reject the recent view of assigning <jats:italic>R. cirrhosa</jats:italic> and its proposed lectotype (iconotype) as a homotypic synonym of <jats:italic>R. maritima</jats:italic>. We agree with an earlier lectotypification of <jats:italic>R. spiralis</jats:italic>, though for another reason than the above-mentioned abused homotypy. Consequently, <jats:italic>R. cirrhosa</jats:italic> is a synonym of neither <jats:italic>R. maritima</jats:italic> or <jats:italic>R. spiralis</jats:italic>, based on material from Petagna in the Herbarium of Naples designated as the holotype of <jats:italic>R. cirrhosa</jats:italic>. We argue for three species to be considered as fully independent taxa: <jats:italic>R. maritima</jats:italic>, <jats:italic>R. spiralis</jats:italic> and <jats:italic>R. cirrhosa</jats:italic>.</jats:p>","dataInfo":null}],"dateofacceptance":{"value":"2020-01-15","dataInfo":null},"publisher":{"value":"Walter de Gruyter GmbH","dataInfo":null},"embargoenddate":null,"source":[{"value":"Crossref","dataInfo":null}],"fulltext":[],"format":[],"contributor":[],"resourcetype":{"classid":"0001","classname":"0001","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"coverage":[],"bestaccessright":null,"context":[],"externalReference":[],"instance":[{"license":null,"accessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository","dataInfo":null},"url":["https://dx.doi.org/10.1515/bot-2019-0045"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null},"pid":[{"value":"10.1515/bot-2019-0045","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"alternateIdentifier":null,"dateofacceptance":{"value":"2020-01-15","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null},{"license":null,"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":null,"url":["https://www.degruyter.com/view/journals/botm/63/3/article-p229.xml","https://www.degruyter.com/document/doi/10.1515/bot-2019-0045/pdf","http://dx.doi.org/10.1515/bot-2019-0045"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref","dataInfo":null},"pid":[{"value":"10.1515/bot-2019-0045","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":null}],"alternateIdentifier":null,"dateofacceptance":{"value":"2020-06-25","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null}],"journal":null}
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Unfortunately, conventional wave theories based on Stokes-type expansions do not consider fluid motions at levels above the unperturbed fluid level. The usual practice of extrapolating the fluid kinematics from the unperturbed free surface to higher points in the fluid is generally reasonable for narrowband waves, but for broadband ocean waves this results in dramatic (and nonphysical) overestimation of surface velocities. Consequently, practical approximations for random waves are at best empirical and are often only loosely constrained by physical principles. In the present work, the authors formulate the governing equations for water waves in an incompressible and inviscid fluid, using a boundary-fitted coordinate system (i.e., sigma or <jats:italic>s</jats:italic> coordinates) to derive expressions for near-surface kinematics in nonlinear random waves from first principles. Comparison to a numerical model valid for highly nonlinear waves shows that the new results 1) are consistent with second-order Stokes theory, 2) are similar to extrapolation methods in narrowband waves, and 3) greatly improve estimates of surface kinematics in random seas.</jats:p>","dataInfo":null}],"dateofacceptance":{"value":"2017-05-09T19:33:59Z","dataInfo":null},"publisher":{"value":"American Meteorological Society","dataInfo":null},"embargoenddate":null,"source":[{"value":"Crossref","dataInfo":null}],"fulltext":[],"format":[],"contributor":[],"resourcetype":{"classid":"0001","classname":"0001","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"coverage":[],"bestaccessright":null,"context":[],"externalReference":[],"instance":[{"license":null,"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":null,"url":["https://journals.ametsoc.org/view/journals/phoc/47/7/jpo-d-16-0281.1.xml","http://journals.ametsoc.org/jpo/article-pdf/47/7/1657/4810788/jpo-d-16-0281_1.pdf","https://journals.ametsoc.org/downloadpdf/journals/phoc/47/7/jpo-d-16-0281.1.xml","http://dx.doi.org/10.1175/jpo-d-16-0281.1"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref","dataInfo":null},"pid":[{"value":"10.1175/jpo-d-16-0281.1","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":null}],"alternateIdentifier":null,"dateofacceptance":{"value":"2017-05-09T19:33:59Z","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null},{"license":null,"accessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository","dataInfo":null},"url":["https://dx.doi.org/10.1175/jpo-d-16-0281.1"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null},"pid":[{"value":"10.1175/jpo-d-16-0281.1","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"alternateIdentifier":null,"dateofacceptance":{"value":"2017-01-01","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null}],"journal":{"name":"Journal of Physical Oceanography","issnPrinted":"0022-3670","issnOnline":"1520-0485","issnLinking":null,"ep":"1673","iss":null,"sp":"1657","vol":"47","edition":null,"conferenceplace":null,"conferencedate":null,"dataInfo":null}}
+{"collectedfrom":[{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref","dataInfo":null},{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1582142606255,"id":"50|doi_________::00df77889b1ee0af015524c627f0cf47","originalId":["10.1109/isscc.2010.5433999","50|doiboost____::00df77889b1ee0af015524c627f0cf47"],"pid":[{"value":"10.1109/isscc.2010.5433999","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":null}],"dateofcollection":"2020-02-19T20:03:26Z","dateoftransformation":null,"extraInfo":[],"oaiprovenance":null,"measures":[],"author":[{"fullname":"Sameh A Ibrahim","name":"Sameh A","surname":"Ibrahim","rank":1,"pid":null,"affiliation":null},{"fullname":"Behzad Razavi","name":"Behzad","surname":"Razavi","rank":2,"pid":null,"affiliation":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":null,"country":[],"subject":[],"title":[{"value":"A 20Gb/s 40mW equalizer in 90nm CMOS technology","qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"dataInfo":null}],"relevantdate":[{"value":"2010-03-24T14:35:14Z","qualifier":{"classid":"created","classname":"created","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"dataInfo":null},{"value":"2010-01-01","qualifier":{"classid":"issued","classname":"issued","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"dataInfo":null},{"value":"2017-06-19","qualifier":{"classid":"updated","classname":"updated","schemeid":"dnet:dataCite_date","schemename":"dnet:dataCite_date"},"dataInfo":null}],"description":[],"dateofacceptance":{"value":"2010-03-24T14:35:14Z","dataInfo":null},"publisher":{"value":"IEEE","dataInfo":null},"embargoenddate":null,"source":[{"value":"Crossref","dataInfo":null}],"fulltext":[],"format":[],"contributor":[],"resourcetype":{"classid":"0004","classname":"0004","schemeid":"dnet:dataCite_resource","schemename":"dnet:dataCite_resource"},"coverage":[],"bestaccessright":null,"context":[],"externalReference":[],"instance":[{"license":null,"accessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0004","classname":"Conference object","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":null,"url":["http://xplorestaging.ieee.org/ielx5/5428240/5433812/05433999.pdf?arnumber=5433999","http://dx.doi.org/10.1109/isscc.2010.5433999"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref","dataInfo":null},"pid":[{"value":"10.1109/isscc.2010.5433999","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":null}],"alternateIdentifier":null,"dateofacceptance":{"value":"2010-03-24T14:35:14Z","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null},{"license":null,"accessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":null},"instancetype":{"classid":"0004","classname":"Conference object","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository","dataInfo":null},"url":["https://dx.doi.org/10.1109/isscc.2010.5433999"],"distributionlocation":null,"collectedfrom":{"key":"10|openaire____::9e3be59865b2c1c335d32dae2fe7b254","value":"Datacite","dataInfo":null},"pid":[{"value":"10.1109/isscc.2010.5433999","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:actionset","classname":"sysimport:actionset","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"alternateIdentifier":null,"dateofacceptance":{"value":"2010-01-01","dataInfo":null},"processingchargeamount":null,"processingchargecurrency":null,"refereed":null}],"journal":{"name":"2010 IEEE International Solid-State Circuits Conference - (ISSCC)","issnPrinted":null,"issnOnline":null,"issnLinking":null,"ep":null,"iss":null,"sp":null,"vol":null,"edition":null,"conferenceplace":null,"conferencedate":null,"dataInfo":null}}
\ No newline at end of file

From 73dc082927a1bd2561bac10073c075a4575df690 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Thu, 5 Aug 2021 15:20:50 +0200
Subject: [PATCH 067/106] added new dumped field (openaccessroute, pid and
 alternate identifier at the level of the instance) and the bipFinder measure
 at the level of the result

---
 .../dhp/oa/graph/dump/ResultMapper.java       | 52 ++++++++++++++++---
 1 file changed, 46 insertions(+), 6 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index fe9b4e443d..9f665c06dd 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -5,6 +5,16 @@ import java.io.Serializable;
 import java.util.*;
 import java.util.stream.Collectors;
 
+import eu.dnetlib.dhp.schema.dump.oaf.AccessRight;
+import eu.dnetlib.dhp.schema.dump.oaf.Author;
+import eu.dnetlib.dhp.schema.dump.oaf.Country;
+import eu.dnetlib.dhp.schema.dump.oaf.GeoLocation;
+import eu.dnetlib.dhp.schema.dump.oaf.Instance;
+import eu.dnetlib.dhp.schema.dump.oaf.KeyValue;
+import eu.dnetlib.dhp.schema.dump.oaf.OpenAccessRoute;
+import eu.dnetlib.dhp.schema.dump.oaf.Qualifier;
+import eu.dnetlib.dhp.schema.dump.oaf.Result;
+import eu.dnetlib.dhp.schema.oaf.*;
 import org.apache.commons.lang3.StringUtils;
 
 import eu.dnetlib.dhp.schema.common.ModelConstants;
@@ -13,10 +23,6 @@ import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityInstance;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Context;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
-import eu.dnetlib.dhp.schema.oaf.DataInfo;
-import eu.dnetlib.dhp.schema.oaf.Field;
-import eu.dnetlib.dhp.schema.oaf.Journal;
-import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
 
 public class ResultMapper implements Serializable {
 
@@ -130,6 +136,13 @@ public class ResultMapper implements Serializable {
 					break;
 			}
 
+			Optional<List<Measure>> mes = Optional.ofNullable(input.getMeasures());
+			if(mes.isPresent()){
+				List<KeyValue> measure = new ArrayList<>();
+				mes.get().forEach(m -> m.getUnit().forEach(u -> measure.add(KeyValue.newInstance(u.getKey(), u.getValue()))));
+				out.setMeasures(measure);
+			}
+
 			Optional
 				.ofNullable(input.getAuthor())
 				.ifPresent(ats -> out.setAuthor(ats.stream().map(at -> getAuthor(at)).collect(Collectors.toList())));
@@ -395,11 +408,12 @@ public class ResultMapper implements Serializable {
 	}
 
 	private static <I extends Instance> void setCommonValue(eu.dnetlib.dhp.schema.oaf.Instance i, I instance) {
-		Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> opAr = Optional
-			.ofNullable(i.getAccessright());
+		Optional<eu.dnetlib.dhp.schema.oaf.AccessRight> opAr = Optional.ofNullable(i.getAccessright());
+
 		if (opAr.isPresent()) {
 			if (Constants.accessRightsCoarMap.containsKey(opAr.get().getClassid())) {
 				String code = Constants.accessRightsCoarMap.get(opAr.get().getClassid());
+
 				instance
 					.setAccessright(
 						AccessRight
@@ -407,9 +421,35 @@ public class ResultMapper implements Serializable {
 								code,
 								Constants.coarCodeLabelMap.get(code),
 								Constants.COAR_ACCESS_RIGHT_SCHEMA));
+				if (opAr.get().getOpenAccessRoute() != null){
+					switch (opAr.get().getOpenAccessRoute()){
+						case hybrid:
+							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.hybrid);
+							break;
+						case gold:
+							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.gold);
+							break;
+						case green:
+							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.green);
+							break;
+						case bronze:
+							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.bronze);
+							break;
+
+					}
+				}
 			}
 		}
 
+		Optional.ofNullable(i.getPid())
+				.ifPresent(pid -> instance.setPid(
+						pid.stream().map(p -> ControlledField.newInstance(p.getQualifier().getClassid(), p.getValue()))
+								.collect(Collectors.toList())));
+
+		Optional.ofNullable(i.getAlternateIdentifier())
+				.ifPresent(ai -> instance.setAlternateIdentifier(ai.stream().map(p -> ControlledField.
+						newInstance(p.getQualifier().getClassid(), p.getValue())).collect(Collectors.toList())));
+
 		Optional
 			.ofNullable(i.getLicense())
 			.ifPresent(value -> instance.setLicense(value.getValue()));

From c3931557e3985c70a99159b414d138576aaf278b Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Fri, 6 Aug 2021 18:56:18 +0200
Subject: [PATCH 068/106] extended the logic of the dump to consider the
 validation date in the relation (also in the dumped result for communities
 and funders at the level of the project), the extention on the instance for
 the APC, the pid, the alternate identifiers, and the extention of the
 AccessRight to store the OpenAccessRoute. Added new resourec for testing and
 extended the old class to verify the new dump. Fixed also issue on relation
 dump: only relation whose source and target are entities in the graph are
 dumped. The same hold for references to projects

---
 .../dhp/oa/graph/dump/DumpProducts.java       |   4 +-
 .../oa/graph/dump/QueryInformationSystem.java |  18 +-
 .../dhp/oa/graph/dump/ResultMapper.java       | 133 ++++++----
 .../dhp/oa/graph/dump/SaveCommunityMap.java   |  23 +-
 .../dhp/oa/graph/dump/SendToZenodoHDFS.java   |   4 +-
 .../graph/dump/community/CommunitySplit.java  |   2 +-
 .../community/SparkPrepareResultProject.java  |  14 +-
 .../dump/complete/DumpGraphEntities.java      |  26 +-
 .../dhp/oa/graph/dump/complete/Extractor.java |   2 +-
 .../dump/complete/QueryInformationSystem.java |   7 +-
 .../dump/complete/SparkDumpRelationJob.java   |  11 +-
 .../funderresults/SparkDumpFunderResults.java |  65 +++--
 .../SparkResultLinkedToProject.java           |  43 ++--
 .../graph/dump/funder_result_parameters.json  |   4 +-
 .../graph/dump/input_parameters_link_prj.json |   4 +-
 .../dhp/oa/graph/dump/DumpJobTest.java        | 182 +++++++++++++-
 .../dump/PrepareResultProjectJobTest.java     | 109 ++++++++
 .../dump/QueryInformationSystemTest.java      |   2 +-
 .../oa/graph/dump/SplitForCommunityTest.java  |   8 +-
 .../dump/complete/CreateRelationTest.java     | 238 +++++++++---------
 .../graph/dump/complete/DumpRelationTest.java |  76 +++++-
 .../complete/QueryInformationSystemTest.java  |   5 +-
 .../ResultLinkedToProjectTest.java            |  10 +-
 .../dump/funderresult/SplitPerFunderTest.java |   8 +-
 .../dump/funderresource/extendeddump/project  |  12 +
 .../funderresource/extendeddump/publication   |   3 +-
 .../dump/funderresource/extendeddump/relation |   9 -
 .../graph/dump/funderresource/match/project   |  12 +
 .../match/{relations.json => relation}        |   4 +-
 .../graph/dump/funderresource/nomatch/project |  12 +
 .../nomatch/{relations.json => relation}      |   0
 .../oa/graph/dump/relation/relation_validated |  30 +++
 .../resultDump/publication_extendedinstance   |   1 +
 .../resultProject/match_validatedRels/project |  23 ++
 .../match_validatedRels/relation              |   8 +
 pom.xml                                       |   2 +-
 36 files changed, 820 insertions(+), 294 deletions(-)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/project
 delete mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/relation
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/project
 rename dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/{relations.json => relation} (95%)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/project
 rename dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/{relations.json => relation} (100%)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels/project
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels/relation

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
index 4ddcea9e8f..d09e584a33 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
@@ -37,8 +37,8 @@ public class DumpProducts implements Serializable {
 			isSparkSessionManaged,
 			spark -> {
 				Utils.removeOutputDir(spark, outputPath);
-                execDump(
-                        spark, inputPath, outputPath, communityMapPath, inputClazz, outputClazz, dumpType);
+				execDump(
+					spark, inputPath, outputPath, communityMapPath, inputClazz, outputClazz, dumpType);
 			});
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index d1f295fcf6..7b661ac668 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -29,15 +29,15 @@ public class QueryInformationSystem {
 		"</community>";
 
 	private static final String XQUERY_CI = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
-			+
-			"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
-			" and  $x//CONFIGURATION/context[./@id=%s]  "
-			+
-			"  return " +
-			"<community> " +
-			"{$x//CONFIGURATION/context/@id}" +
-			"{$x//CONFIGURATION/context/@label}" +
-			"</community>";
+		+
+		"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
+		" and  $x//CONFIGURATION/context[./@id=%s]  "
+		+
+		"  return " +
+		"<community> " +
+		"{$x//CONFIGURATION/context/@id}" +
+		"{$x//CONFIGURATION/context/@label}" +
+		"</community>";
 
 	public CommunityMap getCommunityMap(boolean singleCommunity, String community_id)
 		throws ISLookUpException, DocumentException {
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index 9f665c06dd..e381173383 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -5,6 +5,10 @@ import java.io.Serializable;
 import java.util.*;
 import java.util.stream.Collectors;
 
+import org.apache.commons.lang3.StringUtils;
+
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.dump.oaf.*;
 import eu.dnetlib.dhp.schema.dump.oaf.AccessRight;
 import eu.dnetlib.dhp.schema.dump.oaf.Author;
 import eu.dnetlib.dhp.schema.dump.oaf.Country;
@@ -14,15 +18,13 @@ import eu.dnetlib.dhp.schema.dump.oaf.KeyValue;
 import eu.dnetlib.dhp.schema.dump.oaf.OpenAccessRoute;
 import eu.dnetlib.dhp.schema.dump.oaf.Qualifier;
 import eu.dnetlib.dhp.schema.dump.oaf.Result;
-import eu.dnetlib.dhp.schema.oaf.*;
-import org.apache.commons.lang3.StringUtils;
-
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.dump.oaf.*;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityInstance;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Context;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
+import eu.dnetlib.dhp.schema.oaf.*;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Encoders;
 
 public class ResultMapper implements Serializable {
 
@@ -137,9 +139,12 @@ public class ResultMapper implements Serializable {
 			}
 
 			Optional<List<Measure>> mes = Optional.ofNullable(input.getMeasures());
-			if(mes.isPresent()){
+			if (mes.isPresent()) {
 				List<KeyValue> measure = new ArrayList<>();
-				mes.get().forEach(m -> m.getUnit().forEach(u -> measure.add(KeyValue.newInstance(u.getKey(), u.getValue()))));
+				mes
+					.get()
+					.forEach(
+						m -> m.getUnit().forEach(u -> measure.add(KeyValue.newInstance(m.getId(), u.getValue()))));
 				out.setMeasures(measure);
 			}
 
@@ -271,18 +276,17 @@ public class ResultMapper implements Serializable {
 
 			}
 
-			List<ControlledField> pids = new ArrayList<>();
+
 			Optional
 				.ofNullable(input.getPid())
 				.ifPresent(
-					value -> value
+					value -> out.setPid(value
 						.stream()
-						.forEach(
-							p -> pids
-								.add(
+						.map(
+							p ->
 									ControlledField
-										.newInstance(p.getQualifier().getClassid(), p.getValue()))));
-			out.setPid(pids);
+										.newInstance(p.getQualifier().getClassid(), p.getValue())).collect(Collectors.toList())));
+
 			oStr = Optional.ofNullable(input.getDateofacceptance());
 			if (oStr.isPresent()) {
 				out.setPublicationdate(oStr.get().getValue());
@@ -292,10 +296,11 @@ public class ResultMapper implements Serializable {
 				out.setPublisher(oStr.get().getValue());
 			}
 
-			List<String> sourceList = new ArrayList<>();
+
 			Optional
 				.ofNullable(input.getSource())
-				.ifPresent(value -> value.stream().forEach(s -> sourceList.add(s.getValue())));
+				.ifPresent(value -> out.setSource(value.stream().map(s -> s.getValue()).collect(Collectors.toList()) ));
+					//	value.stream().forEach(s -> sourceList.add(s.getValue())));
 			// out.setSource(input.getSource().stream().map(s -> s.getValue()).collect(Collectors.toList()));
 			List<Subject> subjectList = new ArrayList<>();
 			Optional
@@ -421,8 +426,8 @@ public class ResultMapper implements Serializable {
 								code,
 								Constants.coarCodeLabelMap.get(code),
 								Constants.COAR_ACCESS_RIGHT_SCHEMA));
-				if (opAr.get().getOpenAccessRoute() != null){
-					switch (opAr.get().getOpenAccessRoute()){
+				if (opAr.get().getOpenAccessRoute() != null) {
+					switch (opAr.get().getOpenAccessRoute()) {
 						case hybrid:
 							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.hybrid);
 							break;
@@ -441,14 +446,25 @@ public class ResultMapper implements Serializable {
 			}
 		}
 
-		Optional.ofNullable(i.getPid())
-				.ifPresent(pid -> instance.setPid(
-						pid.stream().map(p -> ControlledField.newInstance(p.getQualifier().getClassid(), p.getValue()))
-								.collect(Collectors.toList())));
+		Optional
+			.ofNullable(i.getPid())
+			.ifPresent(
+				pid -> instance
+					.setPid(
+						pid
+							.stream()
+							.map(p -> ControlledField.newInstance(p.getQualifier().getClassid(), p.getValue()))
+							.collect(Collectors.toList())));
 
-		Optional.ofNullable(i.getAlternateIdentifier())
-				.ifPresent(ai -> instance.setAlternateIdentifier(ai.stream().map(p -> ControlledField.
-						newInstance(p.getQualifier().getClassid(), p.getValue())).collect(Collectors.toList())));
+		Optional
+			.ofNullable(i.getAlternateIdentifier())
+			.ifPresent(
+				ai -> instance
+					.setAlternateIdentifier(
+						ai
+							.stream()
+							.map(p -> ControlledField.newInstance(p.getQualifier().getClassid(), p.getValue()))
+							.collect(Collectors.toList())));
 
 		Optional
 			.ofNullable(i.getLicense())
@@ -554,34 +570,55 @@ public class ResultMapper implements Serializable {
 		return a;
 	}
 
-	private static Pid getOrcid(List<StructuredProperty> p) {
-		for (StructuredProperty pid : p) {
-			if (pid.getQualifier().getClassid().equals(ModelConstants.ORCID)) {
-				Optional<DataInfo> di = Optional.ofNullable(pid.getDataInfo());
-				if (di.isPresent()) {
-					return Pid
-						.newInstance(
+	private static Pid getAuthorPid(StructuredProperty pid) {
+		Optional<DataInfo> di = Optional.ofNullable(pid.getDataInfo());
+		if (di.isPresent()) {
+			return Pid
+					.newInstance(
 							ControlledField
-								.newInstance(
-									pid.getQualifier().getClassid(),
-									pid.getValue()),
+									.newInstance(
+											pid.getQualifier().getClassid(),
+											pid.getValue()),
 							Provenance
-								.newInstance(
-									di.get().getProvenanceaction().getClassname(),
-									di.get().getTrust()));
-				} else {
-					return Pid
-						.newInstance(
+									.newInstance(
+											di.get().getProvenanceaction().getClassname(),
+											di.get().getTrust()));
+		} else {
+			return Pid
+					.newInstance(
 							ControlledField
-								.newInstance(
-									pid.getQualifier().getClassid(),
-									pid.getValue())
+									.newInstance(
+											pid.getQualifier().getClassid(),
+											pid.getValue())
 
-						);
-				}
-
-			}
+					);
 		}
+	}
+
+	private static Pid getOrcid(List<StructuredProperty> p) {
+		List<StructuredProperty> pid_list = p.stream().map(pid -> {
+			if (pid.getQualifier().getClassid().equals(ModelConstants.ORCID) ||
+					(pid.getQualifier().getClassid().equals(ModelConstants.ORCID_PENDING))){
+				return pid;
+			}
+			return  null;
+		}).filter(pid -> pid != null).collect(Collectors.toList());
+
+		if(pid_list.size() == 1){
+			return getAuthorPid(pid_list.get(0));
+		}
+
+		List<StructuredProperty> orcid = pid_list.stream().filter(ap -> ap.getQualifier().getClassid()
+				.equals(ModelConstants.ORCID)).collect(Collectors.toList());
+		if(orcid.size() == 1){
+			return getAuthorPid(orcid.get(0));
+		}
+		orcid = pid_list.stream().filter(ap -> ap.getQualifier().getClassid()
+				.equals(ModelConstants.ORCID_PENDING)).collect(Collectors.toList());
+		if(orcid.size() == 1){
+			return getAuthorPid(orcid.get(0));
+		}
+
 		return null;
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
index 7db19f7719..71bea60478 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
@@ -1,3 +1,4 @@
+
 package eu.dnetlib.dhp.oa.graph.dump;
 
 import java.io.BufferedWriter;
@@ -54,10 +55,10 @@ public class SaveCommunityMap implements Serializable {
 
 	public static void main(String[] args) throws Exception {
 		String jsonConfiguration = IOUtils
-				.toString(
-						SaveCommunityMap.class
-								.getResourceAsStream(
-										"/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json"));
+			.toString(
+				SaveCommunityMap.class
+					.getResourceAsStream(
+						"/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json"));
 
 		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
 		parser.parseArgument(args);
@@ -71,8 +72,10 @@ public class SaveCommunityMap implements Serializable {
 		final String isLookUpUrl = parser.get("isLookUpUrl");
 		log.info("isLookUpUrl: {}", isLookUpUrl);
 
-		final Boolean singleCommunity = Optional.ofNullable(parser.get("singleDeposition"))
-				.map(Boolean::valueOf).orElse(false);
+		final Boolean singleCommunity = Optional
+			.ofNullable(parser.get("singleDeposition"))
+			.map(Boolean::valueOf)
+			.orElse(false);
 
 		final String community_id = Optional.ofNullable(parser.get("communityId")).orElse(null);
 
@@ -82,8 +85,12 @@ public class SaveCommunityMap implements Serializable {
 
 	}
 
-	private void saveCommunityMap(boolean singleCommunity, String community_id) throws ISLookUpException, IOException, DocumentException {
-		writer.write(Utils.OBJECT_MAPPER.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
+	private void saveCommunityMap(boolean singleCommunity, String community_id)
+		throws ISLookUpException, IOException, DocumentException {
+		writer
+			.write(
+				Utils.OBJECT_MAPPER
+					.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
 		writer.close();
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
index 28881b253a..e0b7cf5d73 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
@@ -48,14 +48,14 @@ public class SendToZenodoHDFS implements Serializable {
 			.orElse(false);
 
 		final String depositionId = Optional.ofNullable(parser.get("depositionId")).orElse(null);
-		//final String communityMapPath = parser.get("communityMapPath");
+		// final String communityMapPath = parser.get("communityMapPath");
 
 		Configuration conf = new Configuration();
 		conf.set("fs.defaultFS", hdfsNameNode);
 
 		FileSystem fileSystem = FileSystem.get(conf);
 
-		//CommunityMap communityMap = Utils.readCommunityMap(fileSystem, communityMapPath);
+		// CommunityMap communityMap = Utils.readCommunityMap(fileSystem, communityMapPath);
 
 		RemoteIterator<LocatedFileStatus> fileStatusListIterator = fileSystem
 			.listFiles(
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index d64c265034..6abca22559 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -49,7 +49,7 @@ public class CommunitySplit implements Serializable {
 			.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
 
 		communities
-				.keySet()
+			.keySet()
 			.stream()
 			.forEach(c -> printResult(c, result, outputPath + "/" + communities.get(c).replace(" ", "_")));
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
index 2d43888b46..6b4baafde8 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
@@ -8,6 +8,8 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.stream.Collectors;
 
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Validated;
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
@@ -76,7 +78,7 @@ public class SparkPrepareResultProject implements Serializable {
 	private static void prepareResultProjectList(SparkSession spark, String inputPath, String outputPath) {
 		Dataset<Relation> relation = Utils
 			.readPath(spark, inputPath + "/relation", Relation.class)
-			.filter("dataInfo.deletedbyinference = false and lower(relClass) = 'isproducedby'");
+			.filter("dataInfo.deletedbyinference = false and lower(relClass) = '" + ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
 		Dataset<eu.dnetlib.dhp.schema.oaf.Project> projects = Utils
 			.readPath(spark, inputPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class);
 
@@ -96,7 +98,7 @@ public class SparkPrepareResultProject implements Serializable {
 					rp.setResultId(s);
 					eu.dnetlib.dhp.schema.oaf.Project p = first._1();
 					projectSet.add(p.getId());
-					Project ps = getProject(p);
+					Project ps = getProject(p, first._2);
 
 					List<Project> projList = new ArrayList<>();
 					projList.add(ps);
@@ -105,7 +107,7 @@ public class SparkPrepareResultProject implements Serializable {
 						eu.dnetlib.dhp.schema.oaf.Project op = c._1();
 						if (!projectSet.contains(op.getId())) {
 							projList
-								.add(getProject(op));
+								.add(getProject(op, c._2));
 
 							projectSet.add(op.getId());
 
@@ -120,7 +122,7 @@ public class SparkPrepareResultProject implements Serializable {
 			.json(outputPath);
 	}
 
-	private static Project getProject(eu.dnetlib.dhp.schema.oaf.Project op) {
+	private static Project getProject(eu.dnetlib.dhp.schema.oaf.Project op, Relation relation) {
 		Project p = Project
 			.newInstance(
 				op.getId(),
@@ -155,7 +157,9 @@ public class SparkPrepareResultProject implements Serializable {
 			provenance.setTrust(di.get().getTrust());
 			p.setProvenance(provenance);
 		}
-
+		if (relation.getValidated()){
+			p.setValidated(Validated.newInstance(relation.getValidated(), relation.getValidationDate()));
+		}
 		return p;
 
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
index b843ec3657..7441baaef1 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
@@ -1,6 +1,7 @@
 
 package eu.dnetlib.dhp.oa.graph.dump.complete;
 
+import static com.jayway.jsonpath.Filter.filter;
 import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;
@@ -8,8 +9,12 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.stream.Collectors;
 
+import com.fasterxml.jackson.databind.ObjectMapper;
 import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.ForeachFunction;
 import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.SaveMode;
 import org.apache.spark.sql.SparkSession;
@@ -448,19 +453,18 @@ public class DumpGraphEntities implements Serializable {
 
 	private static <E extends OafEntity> void organizationMap(SparkSession spark, String inputPath, String outputPath,
 		Class<E> inputClazz) {
-		Utils
-			.readPath(spark, inputPath, inputClazz)
-			.map(
-				(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
-				Encoders.bean(Organization.class))
-			.filter(Objects::nonNull)
-			.write()
-			.mode(SaveMode.Overwrite)
-			.option("compression", "gzip")
-			.json(outputPath);
+		Utils.readPath(spark, inputPath, inputClazz)
+				.map(
+						(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
+						Encoders.bean(Organization.class))
+				.filter((FilterFunction<Organization>) o -> o!= null)
+				.write()
+				.mode(SaveMode.Overwrite)
+				.option("compression", "gzip")
+				.json(outputPath);
 	}
 
-	private static Organization mapOrganization(eu.dnetlib.dhp.schema.oaf.Organization org) {
+	private static eu.dnetlib.dhp.schema.dump.oaf.graph.Organization mapOrganization(eu.dnetlib.dhp.schema.oaf.Organization org) {
 		if (org.getDataInfo().getDeletedbyinference())
 			return null;
 		Organization organization = new Organization();
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
index f76f920137..7e8ddfaf8c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
@@ -129,7 +129,7 @@ public class Extractor implements Serializable {
 
 				return relationList.iterator();
 			}, Encoders.bean(Relation.class))
-				.write()
+			.write()
 			.option("compression", "gzip")
 			.mode(SaveMode.Overwrite)
 			.json(outputPath);
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
index 3736b73807..ecb5881985 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
@@ -5,6 +5,8 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.function.Consumer;
 
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
 import org.dom4j.Document;
 import org.dom4j.DocumentException;
 import org.dom4j.Element;
@@ -12,9 +14,9 @@ import org.dom4j.Node;
 import org.dom4j.io.SAXReader;
 import org.jetbrains.annotations.NotNull;
 
+import eu.dnetlib.dhp.utils.DHPUtils;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
-import eu.dnetlib.dhp.utils.DHPUtils;
 
 public class QueryInformationSystem {
 
@@ -136,6 +138,9 @@ public class QueryInformationSystem {
 	}
 
 	private String makeOpenaireId(Node el, String prefix) {
+		if (!prefix.equals(ModelSupport.entityIdPrefix.get("project"))){
+			return null;
+		}
 		String funder = null;
 		String grantId = null;
 		String funding = null;
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
index 11c3600dd9..7370b43f8f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
@@ -107,13 +107,10 @@ public class SparkDumpRelationJob implements Serializable {
 						}
 					}
 				}
-//						Optional
-//								.ofNullable(relation.getDataInfo())
-//								.ifPresent(
-//										datainfo -> rel_new
-//												.setProvenance(
-//														Provenance
-//																.newInstance(datainfo.getProvenanceaction().getClassname(), datainfo.getTrust())));
+				if(relation.getValidated()){
+					rel_new.setValidated(relation.getValidated());
+					rel_new.setValidationDate(relation.getValidationDate());
+				}
 
 				return rel_new;
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index 9fcdcaf78d..1c70525539 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -44,9 +44,9 @@ public class SparkDumpFunderResults implements Serializable {
 		parser.parseArgument(args);
 
 		Boolean isSparkSessionManaged = Optional
-			.ofNullable(parser.get("isSparkSessionManaged"))
-			.map(Boolean::valueOf)
-			.orElse(Boolean.TRUE);
+				.ofNullable(parser.get("isSparkSessionManaged"))
+				.map(Boolean::valueOf)
+				.orElse(Boolean.TRUE);
 		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
 
 		final String inputPath = parser.get("sourcePath");
@@ -55,40 +55,38 @@ public class SparkDumpFunderResults implements Serializable {
 		final String outputPath = parser.get("outputPath");
 		log.info("outputPath: {}", outputPath);
 
-		final String relationPath = parser.get("relationPath");
-		log.info("relationPath: {}", relationPath);
+		final String graphPath = parser.get("graphPath");
+		log.info("relationPath: {}", graphPath);
 
 		SparkConf conf = new SparkConf();
 
 		runWithSparkSession(
-			conf,
-			isSparkSessionManaged,
-			spark -> {
-				Utils.removeOutputDir(spark, outputPath);
-				writeResultProjectList(spark, inputPath, outputPath, relationPath);
-			});
+				conf,
+				isSparkSessionManaged,
+				spark -> {
+					Utils.removeOutputDir(spark, outputPath);
+					writeResultProjectList(spark, inputPath, outputPath, graphPath);
+				});
 	}
 
 	private static void writeResultProjectList(SparkSession spark, String inputPath, String outputPath,
-		String relationPath) {
+											   String graphPath) {
 
-		Dataset<Relation> relation = Utils
-			.readPath(spark, relationPath + "/relation", Relation.class)
-			.filter(
-				"dataInfo.deletedbyinference = false and lower(relClass) = '"
-					+ ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
+		Dataset<eu.dnetlib.dhp.schema.oaf.Project> project = Utils
+				.readPath(spark, graphPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class);
 
 		Dataset<CommunityResult> result = Utils
-			.readPath(spark, inputPath + "/publication", CommunityResult.class)
-			.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
-			.union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class))
-			.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
+				.readPath(spark, inputPath + "/publication", CommunityResult.class)
+				.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
+				.union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class))
+				.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
 
-		List<String> funderList = relation
-			.select("target")
-			.map((MapFunction<Row, String>) value -> value.getString(0).substring(0, 15), Encoders.STRING())
-			.distinct()
-			.collectAsList();
+
+		List<String> funderList = project
+				.select("id")
+				.map((MapFunction<Row, String>) value -> value.getString(0).substring(0, 15), Encoders.STRING())
+				.distinct()
+				.collectAsList();
 
 		funderList.forEach(funder -> {
 			String fundernsp = funder.substring(3);
@@ -109,7 +107,7 @@ public class SparkDumpFunderResults implements Serializable {
 	}
 
 	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath,
-		String funderName) {
+									String funderName) {
 
 		results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
 			if (!Optional.ofNullable(r.getProjects()).isPresent()) {
@@ -117,7 +115,6 @@ public class SparkDumpFunderResults implements Serializable {
 			}
 			for (Project p : r.getProjects()) {
 				if (p.getId().startsWith(nsp)) {
-
 					if (nsp.startsWith("40|irb")) {
 						if (p.getFunder().getShortName().equals(funderName))
 							return r;
@@ -129,15 +126,15 @@ public class SparkDumpFunderResults implements Serializable {
 			}
 			return null;
 		}, Encoders.bean(CommunityResult.class))
-			.filter((FilterFunction<CommunityResult>) r -> r != null)
-			.write()
-			.mode(SaveMode.Overwrite)
-			.option("compression", "gzip")
-			.json(outputPath + "/" + funderName);
+				.filter(Objects::nonNull)
+				.write()
+				.mode(SaveMode.Overwrite)
+				.option("compression", "gzip")
+				.json(outputPath + "/" + funderName);
 	}
 
 	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath,
-		String funderDump) {
+										  String funderDump) {
 
 		if (funder.startsWith("40|irb")) {
 			dumpResults(funder, results, outputPath, "HRZZ");
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
index e0355d6d61..55578fdaba 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
@@ -10,6 +10,7 @@ import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.api.java.function.MapGroupsFunction;
+import org.apache.spark.sql.*;
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.SaveMode;
@@ -21,14 +22,14 @@ import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.oa.graph.dump.Constants;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
 import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.oaf.Project;
 import eu.dnetlib.dhp.schema.oaf.Relation;
 import eu.dnetlib.dhp.schema.oaf.Result;
 import scala.Tuple2;
-import org.apache.spark.sql.*;
-import eu.dnetlib.dhp.schema.oaf.Project;
+
 /**
  * Selects the results linked to projects. Only for these results the dump will be performed.
- * The code to perform the dump and to expend the dumped results with the informaiton related to projects
+ * The code to perform the dump and to expend the dumped results with the information related to projects
  * is the one used for the dump of the community products
  */
 public class SparkResultLinkedToProject implements Serializable {
@@ -78,6 +79,7 @@ public class SparkResultLinkedToProject implements Serializable {
 	private static <R extends Result> void writeResultsLinkedToProjects(SparkSession spark, Class<R> inputClazz,
 		String inputPath, String outputPath, String graphPath) {
 
+		
 		Dataset<R> results = Utils
 			.readPath(spark, inputPath, inputClazz)
 			.filter("dataInfo.deletedbyinference = false and datainfo.invisible = false");
@@ -86,25 +88,32 @@ public class SparkResultLinkedToProject implements Serializable {
 			.filter(
 				"dataInfo.deletedbyinference = false and lower(relClass) = '"
 					+ ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
+		Dataset<Project> project = Utils.readPath(spark, graphPath + "/project", Project.class);
 
-		spark
-				.sql(
-						"Select res.* " +
-								"from relation rel " +
-								"join result res " +
-								"on rel.source = res.id " +
-								"join project p " +
-								"on rel.target = p.id " +
-								"")
-				.as(Encoders.bean(inputClazz))
-		.groupByKey(
-				(MapFunction< R, String>) value -> value
-						.getId(),
+		results.createOrReplaceTempView("result");
+		relations.createOrReplaceTempView("relation");
+		project.createOrReplaceTempView("project");
+
+		Dataset<R> tmp = spark
+			.sql(
+				"Select res.* " +
+					"from relation rel " +
+					"join result res " +
+					"on rel.source = res.id " +
+					"join project p " +
+					"on rel.target = p.id " +
+					"")
+			.as(Encoders.bean(inputClazz));
+		tmp
+			.groupByKey(
+				(MapFunction<R, String>) value -> value
+					.getId(),
 				Encoders.STRING())
-				.mapGroups((MapGroupsFunction<String, R, R>) (k, it) -> it.next(), Encoders.bean(inputClazz))
+			.mapGroups((MapGroupsFunction<String, R, R>) (k, it) -> it.next(), Encoders.bean(inputClazz))
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
 			.json(outputPath);
+	
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json
index 9a5a553b1f..5dc8e8910e 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/funder_result_parameters.json
@@ -18,8 +18,8 @@
 		"paramRequired": false
 	},
 {
-	"paramName": "rp",
-	"paramLongName": "relationPath",
+	"paramName": "gp",
+	"paramLongName": "graphPath",
 	"paramDescription": "the relationPath",
 	"paramRequired": true
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters_link_prj.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters_link_prj.json
index fdd9492fe7..f5641bc456 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters_link_prj.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_parameters_link_prj.json
@@ -24,8 +24,8 @@
 		"paramRequired": true
 	},
 	{
-		"paramName":"rp",
-		"paramLongName":"relationPath",
+		"paramName":"gp",
+		"paramLongName":"graphPath",
 		"paramDescription": "the path to the relations",
 		"paramRequired": true
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index 6b64a4124d..39454192eb 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -7,7 +7,13 @@ import java.nio.file.Path;
 import java.util.Arrays;
 import java.util.List;
 
+import com.fasterxml.jackson.core.JsonProcessingException;
+import com.sun.xml.internal.ws.policy.AssertionSet;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.dump.oaf.Instance;
+import eu.dnetlib.dhp.schema.dump.oaf.OpenAccessRoute;
 import org.apache.commons.io.FileUtils;
+import org.apache.neethi.Assertion;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
@@ -199,7 +205,7 @@ public class DumpJobTest {
 
 		Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
 
-//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
+
 
 	}
 
@@ -302,6 +308,178 @@ public class DumpJobTest {
 
 //TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
 
+	}
+
+	@Test
+	public void testPublicationExtendedInstance(){
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(
+						// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<GraphResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+
+		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+		verificationDataset.show(false);
+
+		GraphResult gr = verificationDataset.first();
+
+
+		Assertions.assertEquals(2, gr.getMeasures().size());
+		Assertions.assertTrue(gr.getMeasures().stream().anyMatch(m -> m.getKey().equals("influence")
+				&& m.getValue().equals("1.62759106106e-08")));
+		Assertions.assertTrue(gr.getMeasures().stream().anyMatch(m -> m.getKey().equals("popularity")
+				&& m.getValue().equals("0.22519296")));
+
+		Assertions.assertEquals(6, gr.getAuthor().size());
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Nikolaidou,Charitini") &&
+				a.getName().equals("Charitini") && a.getSurname().equals("Nikolaidou")
+				&& a.getRank() == 1 && a.getPid() == null));
+
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Votsi,Nefta") &&
+				a.getName().equals("Nefta") && a.getSurname().equals("Votsi")
+				&& a.getRank() == 2 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
+				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Sgardelis,Steanos") &&
+				a.getName().equals("Steanos") && a.getSurname().equals("Sgardelis")
+				&& a.getRank() == 3 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
+				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Halley,John") &&
+				a.getName().equals("John") && a.getSurname().equals("Halley")
+				&& a.getRank() == 4 && a.getPid() == null));
+
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Pantis,John") &&
+				a.getName().equals("John") && a.getSurname().equals("Pantis")
+				&& a.getRank() == 5 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
+				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+
+		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Tsiafouli,Maria") &&
+				a.getName().equals("Maria") && a.getSurname().equals("Tsiafouli")
+				&& a.getRank() == 6 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
+				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+
+		Assertions.assertEquals("publication", gr.getType());
+
+		Assertions.assertEquals("eng", gr.getLanguage().getCode());
+		Assertions.assertEquals("English", gr.getLanguage().getLabel());
+
+		Assertions.assertEquals(1, gr.getCountry().size());
+		Assertions.assertEquals("IT" , gr.getCountry().get(0).getCode());
+		Assertions.assertEquals("Italy" , gr.getCountry().get(0).getLabel());
+		Assertions.assertTrue( gr.getCountry().get(0).getProvenance() == null);
+
+		Assertions.assertEquals(12, gr.getSubjects().size());
+		Assertions.assertTrue(gr.getSubjects().stream().anyMatch(s -> s.getSubject().getValue().equals("Ecosystem Services hotspots")
+				&& s.getSubject().getScheme().equals("ACM") && s.getProvenance() != null  &&
+				s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
+		Assertions.assertTrue(gr.getSubjects().stream().anyMatch(s -> s.getSubject().getValue().equals("Natura 2000")
+				&& s.getSubject().getScheme().equals("") && s.getProvenance() != null  &&
+				s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
+
+		Assertions.assertEquals("Ecosystem Service capacity is higher in areas of multiple designation types",
+				gr.getMaintitle());
+
+		Assertions.assertEquals(null, gr.getSubtitle());
+
+		Assertions.assertEquals(1, gr.getDescription().size());
+
+		Assertions.assertTrue(gr.getDescription().get(0).startsWith("The implementation of the Ecosystem Service (ES) concept into practice"));
+		Assertions.assertTrue(gr.getDescription().get(0).endsWith("start complying with new standards and demands for nature conservation and environmental management."));
+
+		Assertions.assertEquals("2017-01-01", gr.getPublicationdate());
+
+		Assertions.assertEquals("Pensoft Publishers", gr.getPublisher());
+
+		Assertions.assertEquals(null, gr.getEmbargoenddate());
+
+		Assertions.assertEquals(1, gr.getSource().size());
+		Assertions.assertEquals("One Ecosystem 2: e13718", gr.getSource().get(0));
+
+		Assertions.assertEquals(1, gr.getFormat().size());
+		Assertions.assertEquals("text/html", gr.getFormat().get(0));
+
+		Assertions.assertEquals(0, gr.getContributor().size());
+
+		Assertions.assertEquals(0, gr.getCoverage().size());
+
+		Assertions.assertEquals(ModelConstants.ACCESS_RIGHT_OPEN, gr.getBestaccessright().getLabel());
+		Assertions.assertEquals(Constants.accessRightsCoarMap.get(ModelConstants.ACCESS_RIGHT_OPEN), gr.getBestaccessright().getCode());
+		Assertions.assertEquals(null, gr.getBestaccessright().getOpenAccessRoute());
+
+		Assertions.assertEquals("One Ecosystem", gr.getContainer().getName());
+		Assertions.assertEquals("2367-8194", gr.getContainer().getIssnOnline());
+		Assertions.assertEquals("", gr.getContainer().getIssnPrinted());
+		Assertions.assertEquals("", gr.getContainer().getIssnLinking());
+
+		Assertions.assertTrue(null == gr.getDocumentationUrl() || gr.getDocumentationUrl().size() == 0);
+
+		Assertions.assertTrue(null == gr.getCodeRepositoryUrl());
+
+		Assertions.assertEquals(null, gr.getProgrammingLanguage());
+
+		Assertions.assertTrue(null == gr.getContactperson() || gr.getContactperson().size() == 0);
+
+		Assertions.assertTrue(null == gr.getContactgroup() || gr.getContactgroup().size() == 0);
+
+		Assertions.assertTrue(null == gr.getTool() || gr.getTool().size() == 0);
+
+		Assertions.assertEquals(null, gr.getSize());
+
+		Assertions.assertEquals(null, gr.getVersion());
+
+		Assertions.assertTrue(null == gr.getGeolocation() || gr.getGeolocation().size() == 0);
+
+		Assertions.assertEquals("50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2", gr.getId());
+
+		Assertions.assertEquals(2, gr.getOriginalId().size());
+		Assertions.assertTrue(gr.getOriginalId().contains("50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2")
+				&& gr.getOriginalId().contains("10.3897/oneeco.2.e13718"));
+
+		Assertions.assertEquals(1, gr.getPid().size());
+		Assertions.assertTrue(gr.getPid().get(0).getScheme().equals("doi")
+				&& gr.getPid().get(0).getValue().equals("10.1016/j.triboint.2014.05.004"));
+
+		Assertions.assertEquals("2020-03-23T00:20:51.392Z", gr.getDateofcollection());
+
+		Assertions.assertEquals(1, gr.getInstance().size());
+
+		Instance instance = gr.getInstance().get(0);
+		Assertions.assertEquals(0, instance.getPid().size());
+		Assertions.assertEquals(1, instance.getAlternateIdentifier().size());
+		Assertions.assertTrue(instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
+		&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
+		Assertions.assertEquals(null, instance.getLicense());
+		Assertions.assertTrue(instance.getAccessright().getCode().equals(Constants.accessRightsCoarMap
+				.get(ModelConstants.ACCESS_RIGHT_OPEN)));
+		Assertions.assertTrue(instance.getAccessright().getLabel().equals(ModelConstants.ACCESS_RIGHT_OPEN));
+		Assertions.assertTrue(instance.getAccessright().getOpenAccessRoute().equals(OpenAccessRoute.green));
+		Assertions.assertEquals(2, instance.getUrl().size());
+		Assertions.assertTrue(instance.getUrl().contains("https://doi.org/10.3897/oneeco.2.e13718")
+				&& instance.getUrl().contains("https://oneecosystem.pensoft.net/article/13718/"));
+		Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
+		Assertions.assertEquals(null,instance.getArticleprocessingcharge());
+		Assertions.assertEquals("peerReviewed", instance.getRefereed());
+
+
 	}
 
 	@Test
@@ -455,6 +633,8 @@ public class DumpJobTest {
 
 		Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
 
+
+
 //		verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
 //				.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
 //				.count()
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
index d5a9ba8ddb..2fbd37db7b 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
@@ -7,9 +7,11 @@ import java.nio.file.Path;
 import java.util.HashMap;
 
 import org.apache.commons.io.FileUtils;
+import org.apache.neethi.Assertion;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.ForeachFunction;
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
@@ -236,4 +238,111 @@ public class PrepareResultProjectJobTest {
 
 	}
 
+	@Test
+	public void testMatchValidated() throws Exception {
+
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels")
+				.getPath();
+
+		SparkPrepareResultProject.main(new String[] {
+				"-isSparkSessionManaged", Boolean.FALSE.toString(),
+				"-outputPath", workingDir.toString() + "/preparedInfo",
+				"-sourcePath", sourcePath
+		});
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<ResultProject> tmp = sc
+				.textFile(workingDir.toString() + "/preparedInfo")
+				.map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class));
+
+		org.apache.spark.sql.Dataset<ResultProject> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(ResultProject.class));
+
+		Assertions.assertTrue(verificationDataset.count() == 2);
+
+		Assertions
+				.assertEquals(
+						1,
+						verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
+		Assertions
+				.assertEquals(
+						1,
+						verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
+
+		verificationDataset.createOrReplaceTempView("dataset");
+
+		String query = "select resultId, MyT.id project , MyT.title title, MyT.acronym acronym , MyT.provenance.provenance provenance, " +
+				"MyT.validated.validatedByFunder, MyT.validated.validationDate "
+				+ "from dataset "
+				+ "lateral view explode(projectsList) p as MyT ";
+
+		org.apache.spark.sql.Dataset<Row> resultExplodedProvenance = spark.sql(query);
+		Assertions.assertEquals(3, resultExplodedProvenance.count());
+		Assertions.assertEquals(3, resultExplodedProvenance.filter("validatedByFunder = true").count());
+		Assertions
+				.assertEquals(
+						2,
+						resultExplodedProvenance
+								.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						2,
+						resultExplodedProvenance
+								.filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter(
+										"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+												"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+												"and validatedByFunder = true " +
+												"and validationDate = '2021-08-06'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter(
+										"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+												"and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' " +
+												"and validatedByFunder = true and validationDate = '2021-08-04'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter(
+										"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' " +
+												"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+												"and validatedByFunder = true and validationDate = '2021-08-05'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
+
+	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
index 499df3a097..729e78844a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystemTest.java
@@ -24,7 +24,7 @@ public class QueryInformationSystemTest {
 	private static final String XQUERY = "for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType') "
 		+
 		"  where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] " +
-		" and ($x//context/param[./@name = 'status']/text() = 'manager'  or $x//context/param[./@name = 'status']/text() = 'all') "
+		" and ($x//context/param[./@name = 'status']/text() = 'all') "
 		+
 		"  return " +
 		"<community> " +
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/SplitForCommunityTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/SplitForCommunityTest.java
index 42ad5634a7..946e136555 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/SplitForCommunityTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/SplitForCommunityTest.java
@@ -79,7 +79,7 @@ public class SplitForCommunityTest {
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<CommunityResult> tmp = sc
-			.textFile(workingDir.toString() + "/split/dh-ch")
+			.textFile(workingDir.toString() + "/split/Digital_Humanities_and_Cultural_Heritage")
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
@@ -92,7 +92,7 @@ public class SplitForCommunityTest {
 				1, verificationDataset.filter("id = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
 
 		tmp = sc
-			.textFile(workingDir.toString() + "/split/egi")
+			.textFile(workingDir.toString() + "/split/EGI_Federation")
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		verificationDataset = spark
@@ -105,7 +105,7 @@ public class SplitForCommunityTest {
 				1, verificationDataset.filter("id = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
 
 		tmp = sc
-			.textFile(workingDir.toString() + "/split/ni")
+			.textFile(workingDir.toString() + "/split/Neuroinformatics")
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		verificationDataset = spark
@@ -118,7 +118,7 @@ public class SplitForCommunityTest {
 				1, verificationDataset.filter("id = '50|datacite____::6b1e3a2fa60ed8c27317a66d6357f795'").count());
 
 		tmp = sc
-			.textFile(workingDir.toString() + "/split/science-innovation-policy")
+			.textFile(workingDir.toString() + "/split/Science_and_Innovation_Policy_Studies")
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		verificationDataset = spark
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
index 448034d0cf..76d4064229 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
@@ -1,8 +1,6 @@
 
 package eu.dnetlib.dhp.oa.graph.dump.complete;
 
-
-import eu.dnetlib.dhp.schema.oaf.Project;
 import java.util.*;
 import java.util.function.Consumer;
 import java.util.stream.Collectors;
@@ -16,6 +14,7 @@ import com.google.gson.Gson;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
 import eu.dnetlib.dhp.schema.oaf.Datasource;
+import eu.dnetlib.dhp.schema.oaf.Project;
 import eu.dnetlib.dhp.utils.DHPUtils;
 
 public class CreateRelationTest {
@@ -205,7 +204,7 @@ public class CreateRelationTest {
 				"    <param name=\"suggestedAcknowledgement\"/>\n" +
 				"    <param name=\"zenodoCommunity\">oac_ni</param>\n" +
 				"    <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
-					"    <category claim=\"false\" id=\"ni::projects\" label=\"NI Content providers\"/>\n" +
+				"    <category claim=\"false\" id=\"ni::projects\" label=\"NI Content providers\"/>\n" +
 				"    <category claim=\"false\" id=\"ni::contentproviders\" label=\"NI Content providers\">\n" +
 				"        <concept claim=\"false\" id=\"ni::contentproviders::1\" label=\"OpenNeuro\">\n" +
 				"            <param name=\"openaireId\">re3data_____::5b9bf9171d92df854cf3c520692e9122</param>\n" +
@@ -441,57 +440,65 @@ public class CreateRelationTest {
 				"    <param name=\"zenodoCommunity\">oaa_elixir-gr</param>\n" +
 				"    <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
 				"    <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\">\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::12\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">BIO-INFORMATICS RESEARCH NETWORK COORDINATING CENTER (BIRN-CC)</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">1U24RR025736-01</param>\n" +
-					"                        <param name=\"funder\">NIH</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::13\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">COLLABORATIVE RESEARCH: The Cognitive Neuroscience of Category Learning</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">0223843</param>\n" +
-					"                        <param name=\"funder\">NSF</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::14\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">5R01MH082795-05</param>\n" +
-					"                        <param name=\"funder\">NIH</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::15\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">Fragmented early life environmental and emotional / cognitive vulnerabilities</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">1P50MH096889-01A1</param>\n" +
-					"                        <param name=\"funder\">NIH</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::16\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">Enhancement of the 1000 Functional Connectome Project</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">1R03MH096321-01A1</param>\n" +
-					"                        <param name=\"funder\">TUBITAK</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::17\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">CRCNS Data Sharing: An open data repository for cognitive neuroscience: The OpenfMRI Project</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">1131441</param>\n" +
-					"                        <param name=\"funder\">NSF</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">Enhancing Human Cortical Plasticity: Visual Psychophysics and fMRI</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">0121950</param>\n" +
-					"                        <param name=\"funder\">NSF</param>\n" +
-					"                    </concept>\n" +
-					"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
-					"                        <param name=\"projectfullname\">Transforming statistical methodology for neuroimaging meta-analysis.</param>\n" +
-					"                        <param name=\"acronym\"/>\n" +
-					"                        <param name=\"CD_PROJECT_NUMBER\">100309</param>\n" +
-					"                        <param name=\"funder\">WT</param>\n" +
-					"                    </concept>\n" +
-					"                </category>" +
+				"                    <concept claim=\"false\" id=\"ni::projects::12\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">BIO-INFORMATICS RESEARCH NETWORK COORDINATING CENTER (BIRN-CC)</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">1U24RR025736-01</param>\n" +
+				"                        <param name=\"funder\">NIH</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::13\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">COLLABORATIVE RESEARCH: The Cognitive Neuroscience of Category Learning</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">0223843</param>\n" +
+				"                        <param name=\"funder\">NSF</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::14\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">5R01MH082795-05</param>\n" +
+				"                        <param name=\"funder\">NIH</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::15\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">Fragmented early life environmental and emotional / cognitive vulnerabilities</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">1P50MH096889-01A1</param>\n" +
+				"                        <param name=\"funder\">NIH</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::16\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">Enhancement of the 1000 Functional Connectome Project</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">1R03MH096321-01A1</param>\n" +
+				"                        <param name=\"funder\">TUBITAK</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::17\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">CRCNS Data Sharing: An open data repository for cognitive neuroscience: The OpenfMRI Project</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">1131441</param>\n" +
+				"                        <param name=\"funder\">NSF</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">Enhancing Human Cortical Plasticity: Visual Psychophysics and fMRI</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">0121950</param>\n" +
+				"                        <param name=\"funder\">NSF</param>\n" +
+				"                    </concept>\n" +
+				"                    <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
+				"                        <param name=\"projectfullname\">Transforming statistical methodology for neuroimaging meta-analysis.</param>\n"
+				+
+				"                        <param name=\"acronym\"/>\n" +
+				"                        <param name=\"CD_PROJECT_NUMBER\">100309</param>\n" +
+				"                        <param name=\"funder\">WT</param>\n" +
+				"                    </concept>\n" +
+				"                </category>" +
 
-					"    <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
+				"    <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
 				+
 				"        <concept claim=\"false\" id=\"elixir-gr::contentproviders::1\" label=\"bio.tools\">\n" +
 				"            <param name=\"openaireId\">rest________::b8e502674c3c3499d5374e9b2ea6d8d5</param>\n" +
@@ -626,88 +633,87 @@ public class CreateRelationTest {
 		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
 
 		queryInformationSystem
-				.getContextRelation(consumer, "projects", ModelSupport.getIdPrefix(Project.class));
+			.getContextRelation(consumer, "projects", ModelSupport.getIdPrefix(Project.class));
 
 		cInfoList.forEach(c -> System.out.println(new Gson().toJson(c)));
 
-
 		List<Relation> rList = new ArrayList<>();
 
 		cInfoList.forEach(cInfo -> Process.getRelation(cInfo).forEach(rList::add));
 
-		Assertions.assertEquals(44 , rList.size());
+		Assertions.assertEquals(44, rList.size());
 
 		Assertions
-				.assertFalse(
-						rList
-								.stream()
-								.map(r -> r.getSource().getId())
-								.collect(Collectors.toSet())
-								.contains(
-										String
-												.format(
-														"%s|%s::%s", Constants.CONTEXT_ID,
-														Constants.CONTEXT_NS_PREFIX,
-														DHPUtils.md5("dh-ch"))));
+			.assertFalse(
+				rList
+					.stream()
+					.map(r -> r.getSource().getId())
+					.collect(Collectors.toSet())
+					.contains(
+						String
+							.format(
+								"%s|%s::%s", Constants.CONTEXT_ID,
+								Constants.CONTEXT_NS_PREFIX,
+								DHPUtils.md5("dh-ch"))));
 
 		Assertions
-				.assertEquals(
-						2,
-						rList
-								.stream()
-								.filter(
-										r -> r
-												.getSource()
-												.getId()
-												.equals(
-														String
-																.format(
-																		"%s|%s::%s", Constants.CONTEXT_ID,
-																		Constants.CONTEXT_NS_PREFIX,
-																		DHPUtils.md5("clarin"))))
-								.collect(Collectors.toList())
-								.size());
+			.assertEquals(
+				2,
+				rList
+					.stream()
+					.filter(
+						r -> r
+							.getSource()
+							.getId()
+							.equals(
+								String
+									.format(
+										"%s|%s::%s", Constants.CONTEXT_ID,
+										Constants.CONTEXT_NS_PREFIX,
+										DHPUtils.md5("clarin"))))
+					.collect(Collectors.toList())
+					.size());
 
 		Assertions
-				.assertEquals(
-						2,
-						rList
-								.stream()
-								.filter(
-										r -> r
-												.getTarget()
-												.getId()
-												.equals(
-														String
-																.format(
-																		"%s|%s::%s", Constants.CONTEXT_ID,
-																		Constants.CONTEXT_NS_PREFIX,
-																		DHPUtils.md5("clarin"))))
-								.collect(Collectors.toList())
-								.size());
+			.assertEquals(
+				2,
+				rList
+					.stream()
+					.filter(
+						r -> r
+							.getTarget()
+							.getId()
+							.equals(
+								String
+									.format(
+										"%s|%s::%s", Constants.CONTEXT_ID,
+										Constants.CONTEXT_NS_PREFIX,
+										DHPUtils.md5("clarin"))))
+					.collect(Collectors.toList())
+					.size());
 
 		Set<String> tmp = rList
-				.stream()
-				.filter(
-						r -> r
-								.getSource()
-								.getId()
-								.equals(
-										String
-												.format(
-														"%s|%s::%s", Constants.CONTEXT_ID,
-														Constants.CONTEXT_NS_PREFIX,
-														DHPUtils.md5("clarin"))))
-				.map(r -> r.getTarget().getId())
-				.collect(Collectors.toSet());
+			.stream()
+			.filter(
+				r -> r
+					.getSource()
+					.getId()
+					.equals(
+						String
+							.format(
+								"%s|%s::%s", Constants.CONTEXT_ID,
+								Constants.CONTEXT_NS_PREFIX,
+								DHPUtils.md5("clarin"))))
+			.map(r -> r.getTarget().getId())
+			.collect(Collectors.toSet());
 
 		Assertions
-				.assertTrue(
-						tmp.contains("40|corda__h2020::b5a4eb56bf84bef2ebc193306b4d423f") &&
-								tmp.contains("40|corda_______::ef782b2d85676aa3e5a907427feb18c4") );
+			.assertTrue(
+				tmp.contains("40|corda__h2020::b5a4eb56bf84bef2ebc193306b4d423f") &&
+					tmp.contains("40|corda_______::ef782b2d85676aa3e5a907427feb18c4"));
 
 		rList.forEach(rel -> {
-			if (rel.getSource().getId().startsWith("40|")){
+			if (rel.getSource().getId().startsWith("40|")) {
 				String proj = rel.getSource().getId().substring(3);
 				Assertions.assertTrue(proj.substring(0, proj.indexOf("::")).length() == 12);
 			}
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
index d80eb3ec6e..a310448a43 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
@@ -10,6 +10,7 @@ import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.ForeachFunction;
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
@@ -71,7 +72,7 @@ public class DumpRelationTest {
 	public void test1() throws Exception {
 
 		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation")
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation")
 			.getPath();
 
 		SparkDumpRelationJob.main(new String[] {
@@ -93,6 +94,8 @@ public class DumpRelationTest {
 
 		verificationDataset.createOrReplaceTempView("table");
 
+		verificationDataset.foreach((ForeachFunction<Relation>)r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
+
 		Dataset<Row> check = spark
 			.sql(
 				"SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance "
@@ -127,4 +130,75 @@ public class DumpRelationTest {
 					.count());
 	}
 
+	@Test
+	public void test2() throws Exception {
+
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated")
+				.getPath();
+
+		SparkDumpRelationJob.main(new String[] {
+				"-isSparkSessionManaged", Boolean.FALSE.toString(),
+				"-outputPath", workingDir.toString() + "/relation",
+				"-sourcePath", sourcePath
+		});
+
+//		dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<Relation> tmp = sc
+				.textFile(workingDir.toString() + "/relation")
+				.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
+
+		org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
+
+		verificationDataset.createOrReplaceTempView("table");
+
+		verificationDataset.foreach((ForeachFunction<Relation>)r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
+
+		Dataset<Row> check = spark
+				.sql(
+						"SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance "
+								+
+								"from table ");
+
+		Assertions.assertEquals(20, check.filter("name = 'isProvidedBy'").count());
+		Assertions
+				.assertEquals(
+						20, check
+								.filter(
+										"name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " +
+												"provenance = 'Harvested'")
+								.count());
+
+		Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count());
+		Assertions
+				.assertEquals(
+						7, check
+								.filter(
+										"name = 'isParticipant' and stype = 'organization' and ttype = 'project' " +
+												"and provenance = 'Harvested'")
+								.count());
+
+		Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count());
+		Assertions
+				.assertEquals(
+						1, check
+								.filter(
+										"name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " +
+												"and provenance = 'Inferred by OpenAIRE'")
+								.count());
+
+		Assertions.assertEquals(2, check.filter("name = 'isProducedBy'").count());
+		Assertions
+				.assertEquals(
+						2, check
+								.filter(
+										"name = 'isProducedBy' and stype = 'project' and ttype = 'result' " +
+												"and provenance = 'Harvested' and validated = true " +
+												"and validationDate = '2021-08-06'")
+								.count());
+	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
index d769aa138a..fa1528e90f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
@@ -6,6 +6,7 @@ import static org.mockito.Mockito.lenient;
 import java.util.*;
 import java.util.function.Consumer;
 
+import eu.dnetlib.dhp.schema.common.ModelSupport;
 import org.junit.jupiter.api.Assertions;
 import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
@@ -528,7 +529,7 @@ public class QueryInformationSystemTest {
 		List<ContextInfo> cInfoList = new ArrayList<>();
 		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
 		queryInformationSystem.execContextRelationQuery();
-		queryInformationSystem.getContextRelation(consumer, "contentproviders", "10|");
+		queryInformationSystem.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
 
 		Assertions.assertEquals(5, cInfoList.size());
 	}
@@ -539,7 +540,7 @@ public class QueryInformationSystemTest {
 		List<ContextInfo> cInfoList = new ArrayList<>();
 		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
 		queryInformationSystem.execContextRelationQuery();
-		queryInformationSystem.getContextRelation(consumer, "contentproviders", "10");
+		queryInformationSystem.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
 
 		cInfoList.forEach(contextInfo -> {
 			switch (contextInfo.getId()) {
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/ResultLinkedToProjectTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/ResultLinkedToProjectTest.java
index 6c5ebbab36..0b062abd5c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/ResultLinkedToProjectTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/ResultLinkedToProjectTest.java
@@ -75,8 +75,8 @@ public class ResultLinkedToProjectTest {
 			.getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/papers.json")
 			.getPath();
 
-		final String relationPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/relations.json")
+		final String graphPath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch")
 			.getPath();
 
 		SparkResultLinkedToProject.main(new String[] {
@@ -84,7 +84,7 @@ public class ResultLinkedToProjectTest {
 			"-outputPath", workingDir.toString() + "/preparedInfo",
 			"-sourcePath", sourcePath,
 			"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
-			"-relationPath", relationPath
+			"-graphPath", graphPath
 
 		});
 
@@ -109,7 +109,7 @@ public class ResultLinkedToProjectTest {
 			.getPath();
 
 		final String relationPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relations.json")
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/funderresource/match")
 			.getPath();
 
 		SparkResultLinkedToProject.main(new String[] {
@@ -117,7 +117,7 @@ public class ResultLinkedToProjectTest {
 			"-outputPath", workingDir.toString() + "/preparedInfo",
 			"-sourcePath", sourcePath,
 			"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
-			"-relationPath", relationPath
+			"-graphPath", relationPath
 
 		});
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
index 26187f0a32..9dd2aa41eb 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
@@ -75,7 +75,7 @@ public class SplitPerFunderTest {
 			"-isSparkSessionManaged", Boolean.FALSE.toString(),
 			"-outputPath", workingDir.toString() + "/split",
 			"-sourcePath", sourcePath,
-			"-relationPath", sourcePath
+			"-graphPath", sourcePath
 
 		});
 
@@ -143,5 +143,11 @@ public class SplitPerFunderTest {
 			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 		Assertions.assertEquals(1, tmp.count());
 
+		// CONICYT 0
+		tmp = sc
+				.textFile(workingDir.toString() + "/split/CONICYTF")
+				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+		Assertions.assertEquals(0, tmp.count());
+
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/project b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/project
new file mode 100644
index 0000000000..f68cead77a
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/extendeddump/project
@@ -0,0 +1,12 @@
+{"callidentifier":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"Fotoniikka ja modernit kuvantamismenetelmät LT"},"code":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"135027"},"collectedfrom":[{"key":"10|openaire____::6ac933301a3933c8a22ceebea7000326","value":"Academy of Finland"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"dateofcollection":"2019-01-25","dateoftransformation":"2019-04-16","duration":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"0"},"ecarticle29_3":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"ecsc39":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"extraInfo":[],"fundedamount":0.0,"fundingtree":[{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"<fundingtree><funder>\n         <id>aka_________::AKA</id>\n         <shortname>AKA</shortname>\n         <name>Academy of Finland</name>\n         <originalname>Academy of Finland</originalname>\n         <jurisdiction>FI</jurisdiction>\n      </funder></fundingtree>"}],"id":"40|cihr________::1e5e62235d094afd01cd56e65112fc63","jsonextrainfo":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"{}"},"lastupdatetimestamp":1594398578323,"oamandatepublications":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"optional1":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"190,000 €"},"originalId":["aka_________::135027"],"pid":[],"subjects":[],"title":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"Dynamic 3D resolution-enhanced low-coherence interferometric imaging / Consortium: Hi-Lo"},"totalcost":0.0}
+{"callidentifier":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"Academy Project Funding TT"},"code":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"316061"},"collectedfrom":[{"key":"10|openaire____::6ac933301a3933c8a22ceebea7000326","value":"Academy of Finland"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"dateofcollection":"2019-01-25","dateoftransformation":"2019-04-16","duration":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"0"},"ecarticle29_3":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"ecsc39":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"extraInfo":[],"fundedamount":0.0,"fundingtree":[{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"<fundingtree><funder>\n         <id>aka_________::AKA</id>\n         <shortname>AKA</shortname>\n         <name>Academy of Finland</name>\n         <originalname>Academy of Finland</originalname>\n         <jurisdiction>FI</jurisdiction>\n      </funder></fundingtree>"}],"id":"40|nwo_________::dc69ada721bf21ed51055b6421850d73","jsonextrainfo":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"{}"},"lastupdatetimestamp":1594398578323,"oamandatepublications":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"optional1":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"450,000 €"},"originalId":["aka_________::316061"],"pid":[],"subjects":[],"title":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"Finnish Imaging of Degenerative Shoulder Study (FIMAGE): A study on the prevalence of degenerative imaging changes of the shoulder and their relevance to clinical symptoms in the general population."},"totalcost":0.0}
+{"acronym":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"MOISE"},"code":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"ANR-17-CE05-0033"},"collectedfrom":[{"key":"10|openaire____::457528c43fabd74e212db2ed61101075","value":"Agence Nationale de la Recherche"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"dateofcollection":"2019-12-24","dateoftransformation":"2020-01-07","duration":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"0"},"ecarticle29_3":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"ecsc39":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"extraInfo":[],"fundedamount":0.0,"fundingtree":[{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"<fundingtree><funder>\n         <id>anr_________::ANR</id>\n         <shortname>ANR</shortname>\n         <name>French National Research Agency (ANR)</name>\n         <originalname>Agence Nationale de la Recherche</originalname>\n         <jurisdiction>FR</jurisdiction>\n      </funder></fundingtree>"}],"id":"40|nih_________::031bb5f2f70239b3210eda38b2079f67","jsonextrainfo":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"{}"},"lastupdatetimestamp":1594398578323,"oamandatepublications":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"originalId":["anr_________::ANR-17-CE05-0033"],"pid":[],"subjects":[],"title":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"METAL OXIDES AS LOW LOADED NANO-IRIDIUM SUPPORT FOR COMPETITIVE WATER ELECTROLYSIS"},"totalcost":0.0}
+{"acronym":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"GALAXY"},"code":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"ANR-09-SEGI-0005"},"collectedfrom":[{"key":"10|openaire____::457528c43fabd74e212db2ed61101075","value":"Agence Nationale de la Recherche"}],"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"dateofcollection":"2019-12-24","dateoftransformation":"2020-01-07","duration":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"0"},"ecarticle29_3":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"ecsc39":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"extraInfo":[],"fundedamount":0.0,"fundingtree":[{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"<fundingtree><funder>\n         <id>anr_________::ANR</id>\n         <shortname>ANR</shortname>\n         <name>French National Research Agency (ANR)</name>\n         <originalname>Agence Nationale de la Recherche</originalname>\n         <jurisdiction>FR</jurisdiction>\n      </funder></fundingtree>"}],"id":"40|nsf_________::03748bcb5d754c951efec9700e18a56d","jsonextrainfo":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"{}"},"lastupdatetimestamp":1594398578323,"oamandatepublications":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"false"},"originalId":["anr_________::ANR-09-SEGI-0005"],"pid":[],"subjects":[],"title":{"dataInfo":{"deletedbyinference":false,"inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.900000000000000022"},"value":"DEVELOPPEMENT COLLABORATIF DE SYSTEMES COMPLEXES SELON UNE APPROCHE GUIDEE  PAR LES MODELES"},"totalcost":0.0}
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This study focuses on estimating the evapotranspiration and crop coefficients of table grapes vineyards trained on overhead “tendone” systems in the Apulia region (Italy). Maximum vineyard transpiration was estimated by adopting the “direct” methodology for ETp proposed by the Food and Agriculture Organization in Irrigation and Drainage Paper No. 56, with crop parameters estimated from Landsat 8 and RapidEye satellite data in combination with ground-based meteorological data. The modeling results of two growing seasons (2013 and 2014) indicated that canopy growth, seasonal and 10-day sums evapotranspiration values were strictly related to thermal requirements and rainfall events. The estimated values of mean seasonal daily evapotranspiration ranged between 4.2 and 4.1 mm·d−1, while midseason estimated values of crop coefficients ranged from 0.88 to 0.93 in 2013,  and 1.02 to 1.04 in 2014, respectively. The experimental evapotranspiration values calculated represent the maximum value in absence of stress, so the resulting crop coefficients should be used with some caution. It is concluded that the retrieval of crop parameters and evapotranspiration derived from remotely-sensed data could be helpful for downscaling to the field the local weather conditions and agronomic practices and thus may be the basis for supporting grape growers and irrigation managers."],"format":["application/pdf"],"id":"50|dedup_wf_001::0bc332de35b4eb0cc3d0c54b3ff22dd3","instance":[{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|openaire____::a8db6f6b2ce4fe72e8b2314a9a93e7d9","value":"Sygma"},"hostedby":{"key":"10|openaire____::55045bd2a65019fd8e6741a755395c8c","value":"Unknown Repository"},"license":"https://creativecommons.org/licenses/by/4.0/","refereed":"UNKNOWN","type":"Article","url":["http://dx.doi.org/10.3390/rs71114708"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|openaire____::081b82f96300b6a6e3d282bad31cb6e2","value":"Crossref"},"hostedby":{"key":"10|doajarticles::f7180a75ef642fcf5309759e0d2c431a","value":"Remote Sensing"},"license":"https://creativecommons.org/licenses/by/4.0/","publicationdate":"2015-11-05","refereed":"UNKNOWN","type":"Article","url":["http://www.mdpi.com/2072-4292/7/11/14708/pdf","http://dx.doi.org/10.3390/rs71114708"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|openaire____::8ac8380272269217cb09a928c8caa993","value":"UnpayWall"},"hostedby":{"key":"10|doajarticles::f7180a75ef642fcf5309759e0d2c431a","value":"Remote Sensing"},"license":"cc-by","refereed":"UNKNOWN","type":"Article","url":["https://www.mdpi.com/2072-4292/7/11/14708/pdf"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|openaire____::5f532a3fc4f1ea403f37070f59a7a53a","value":"Microsoft Academic Graph"},"hostedby":{"key":"10|doajarticles::f7180a75ef642fcf5309759e0d2c431a","value":"Remote Sensing"},"refereed":"UNKNOWN","type":"Article","url":["https://dblp.uni-trier.de/db/journals/remotesensing/remotesensing7.html#VaninoPNMBD15","https://doi.org/10.3390/rs71114708","https://core.ac.uk/display/55147144","http://doi.org/10.3390/rs71114708","https://academic.microsoft.com/#/detail/2149946514"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|openaire____::c2cdfa5866e03cdd07d313cbc8fb8311","value":"Multidisciplinary Digital Publishing Institute"},"hostedby":{"key":"10|doajarticles::f7180a75ef642fcf5309759e0d2c431a","value":"Remote Sensing"},"license":"http://creativecommons.org/licenses/by/3.0/","publicationdate":"2015-11-05","refereed":"UNKNOWN","type":"Other literature type","url":["http://dx.doi.org/10.3390/rs71114708"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"},"hostedby":{"key":"10|doajarticles::f7180a75ef642fcf5309759e0d2c431a","value":"Remote Sensing"},"publicationdate":"2015-11-01","refereed":"UNKNOWN","type":"Article","url":["http://www.mdpi.com/2072-4292/7/11/14708","https://doaj.org/toc/2072-4292"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|opendoar____::d8c24ca8f23c562a5600876ca2a550ce","value":"Archivio della ricerca - 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Vertical velocities can be estimated indirectly from in situ observations by theoretical frameworks like the-equation. Direct measures of vertical exchanges are challenging due to their typically ephemeral spatiotemporal scales. In this study we address this problem with an adaptive sampling strategy coupling various biophysical instruments. We analyze the 3-D organization of a cyclonic mesoscale structure finely sampled during the Observing Submesoscale Coupling At High Resolution cruise in the Ligurian Sea during fall 2015. The observations, acquired with a moving vessel profiler, highlight a subsurface low-salinity layer (≃50 m), as well as rising isopycnals, generated by geostrophic cyclonic circulation, in the structure's center. Reconstructed 3-D fields of density and horizontal velocities are used to estimate the vertical velocity field down to 250 m by applying the adiabatic QG-equation, for the first time in this region. The vertical motions are characterized by multipolar patterns of downward and upward velocities on the edges of the structure and significantly smaller vertical velocities in its center. Both the 3-D distribution of particles (size ≥100 μm), measured with a laser optical plankton counter, and the Synechococcus and Prochlorococcus abundances (cell per cubic meter) measured by flow cytometry are consistent with the 3-D velocity field. In particular, a secondary vertical recirculation is identified that upwells particles (from 250 to 100 m) along isohalines to the structure's center. 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Vertical velocities can be estimated indirectly from in situ observations by theoretical frameworks like the-equation. Direct measures of vertical exchanges are challenging due to their typically ephemeral spatiotemporal scales. In this study we address this problem with an adaptive sampling strategy coupling various biophysical instruments. We analyze the 3-D organization of a cyclonic mesoscale structure finely sampled during the Observing Submesoscale Coupling At High Resolution cruise in the Ligurian Sea during fall 2015. The observations, acquired with a moving vessel profiler, highlight a subsurface low-salinity layer (≃50 m), as well as rising isopycnals, generated by geostrophic cyclonic circulation, in the structure's center. Reconstructed 3-D fields of density and horizontal velocities are used to estimate the vertical velocity field down to 250 m by applying the adiabatic QG-equation, for the first time in this region. The vertical motions are characterized by multipolar patterns of downward and upward velocities on the edges of the structure and significantly smaller vertical velocities in its center. Both the 3-D distribution of particles (size ≥100 μm), measured with a laser optical plankton counter, and the Synechococcus and Prochlorococcus abundances (cell per cubic meter) measured by flow cytometry are consistent with the 3-D velocity field. In particular, a secondary vertical recirculation is identified that upwells particles (from 250 to 100 m) along isohalines to the structure's center. Besides demonstrating the effect of vertical patterns on biogeochemical distributions, this case study suggests to use particle matter as a tracer to assess physical dynamics."],"format":["application/pdf"],"id":"50|dedup_wf_001::0d16b1714ab3077df73893a8ea57d776","instance":[{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|opendoar____::7e7757b1e12abcb736ab9a754ffb617a","value":"Hyper Article en Ligne"},"hostedby":{"key":"10|opendoar____::7e7757b1e12abcb736ab9a754ffb617a","value":"Hyper Article en 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+{"author":[{"fullname":"Sanda Pletikosic","rank":1},{"fullname":"Mladenka Tkalčić","rank":2}],"bestaccessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":[{"key":"10|opendoar____::2e3d2c4f33a7a1f58bc6c81cacd21e9c","value":"Repository of the University of Rijeka, Faculty of Humanities and Social Sciences"},{"key":"10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0","value":"HRČAK - Portal of scientific journals of Croatia"},{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"}],"contributor":[],"country":[{"code":"HR","label":"Croatia","provenance":{"provenance":"Propagation of country to result collected from datasources of type institutional repositories","trust":"0.85"}}],"coverage":[],"dateofcollection":"2020-05-09T12:33:14.336Z","description":["Irritable bowel syndrome is regarded as a biopsychosocial disorder, the result of a complex combination of predisposing, precipitating and perpetuating factors. Personality traits, affective status and stress are some of the relevant factors contributing to lower quality of life and symptom exacerbation in IBS patients. In order to examine the role of stress in IBS symptom exacerbation, the aims of this study were to explore the relationship of daily stressful events and symptom severity in a prospective manner and to explore the roles of neuroticism, anxiety, depression and stress in the vicious circle of symptom perpetuation. A total of 49 patients with IBS reported their symptom severity and daily stressful events intensity each day for 14 consecutive days. They also completed the Big five personality inventory, the Beck Depression Inventory and the State-trait anxiety inventory. Cross-correlation analyses were performed on the time series data for daily stress and symptom severity for each participant separately. Four different patterns of relationships were found in different subgroups of participants: positive cross-correlations of symptom severity and stress intensity on the same day; higher symptom severity on days following stressful days; lower symptom severity on days following stressful days; and lower stress intensity on days following severe symptoms. Using average scores for daily stress and symptom severity, as well as scores for neuroticism, anxiety and depression, we performed a path analysis to test a model of symptom exacerbation. It showed that, on the group level, average stress intensity predicts average symptom severity. Neuroticism and anxiety were not significant predictors of symptom severity, while depression showed a marginally significant relationship with symptom severity, mediated by stress intensity. In conclusion, depression and daily stress seem to be important contributors to the vicious circle of IBS symptom perpetuation.","Síndrome del intestino irritable se considera un trastorno biopsicosocial, el resultado de la combinación compleja de factores predisponentes, precipitantes y perpetuos. Rasgos de personalidad, estado afectivo y estrés son algunos de los factores relevantes que contribuyen a la calidad de vida más baja y la exacerbación sintomática de los pacientes con SII. Para examinar el papel del estrés en la exacerbación sintomática de SII, el objetivo de este estudio era explorar la relación entre los acontecimientos cotidianos estresantes y la intensidad de los síntomas de forma prospectiva, tanto como explorar los papeles del neuroticismo, ansiedad, depresión y estrés en el círculo vicioso de perpetuación de los síntomas. Todos los 49 pacientes con SII informaron sobre la intensidad de los síntomas y la intensidad de los acontecimientos cotidianos estresantes cada día durante 14 días consecutivos. Además, completaron el Test de personalidad de los cinco grandes, Inventario de depresión de Beck e Inventario de ansiedad estado-rasgo. En los datos de series temporales se hizo el análisis de correlación cruzada para la intensidad del estrés diario y de los síntomas para cada participante por separado. Se encontraron cuatro patrones de relación diferentes en diferentes subgrupos de participantes: correlación cruzada positiva de la intensidad de los síntomas y del estrés el mismo día; intensidad de los síntomas más alta en los días después de los días estresantes; intensidad de los síntomas más baja en los días después de los días estresantes e intensidad del estrés más baja en los días después de los síntomas graves. Usando resultados promedios para el estrés diario y la intensidad de los síntomas, tanto como resultados para el neuroticismo, ansiedad y depresión, realizamos un análisis del camino para examinar el modelo de la exacerbación de los síntomas. Mostró que, al nivel de grupo, la intensidad del estrés promedia predice la intensidad de los síntomas promedia. Neuroticismo y ansiedad no eran predictores significativos de la intensidad de los síntomas, mientras que la depresión demostró una relación marginalmente significante con la intensidad de los síntomas, mediada por la intensidad del estrés. En conclusión, la depresión y el estrés diario parecen ser contribuidores importantes al círculo vicioso de la perpetuación de los síntomas SII."],"format":["application/pdf"],"id":"50|dedup_wf_001::054ea3bc3ccc386d150d900776e1070d","instance":[{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|opendoar____::2e3d2c4f33a7a1f58bc6c81cacd21e9c","value":"Repository of the University of Rijeka, Faculty of Humanities and Social Sciences"},"hostedby":{"key":"10|opendoar____::2e3d2c4f33a7a1f58bc6c81cacd21e9c","value":"Repository of the University of Rijeka, Faculty of Humanities and Social Sciences"},"license":"http://creativecommons.org/licenses/by/4.0/","publicationdate":"2016-04-01","refereed":"UNKNOWN","type":"Article","url":["https://repository.ffri.uniri.hr/islandora/object/ffri:1182","https://urn.nsk.hr/urn:nbn:hr:186:701987","https://repository.ffri.uniri.hr/islandora/object/ffri:1182/datastream/FILE0"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0","value":"HRČAK - Portal of scientific journals of Croatia"},"hostedby":{"key":"10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0","value":"HRČAK - Portal of scientific journals of Croatia"},"publicationdate":"2016-01-01","refereed":"UNKNOWN","type":"Other literature type","url":["https://hrcak.srce.hr/156331","https://hrcak.srce.hr/file/230444"]},{"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/"},"collectedfrom":{"key":"10|driver______::bee53aa31dc2cbb538c10c2b65fa5824","value":"DOAJ-Articles"},"hostedby":{"key":"10|doajarticles::23738aeeb586d9f9b652c75aaff54dd4","value":"Psychological Topics"},"publicationdate":"2016-04-01","refereed":"UNKNOWN","type":"Article","url":["http://pt.ffri.hr/index.php/pt/article/view/317","https://doaj.org/toc/1332-0742"]}],"language":{"code":"eng","label":"English"},"lastupdatetimestamp":1603727328518,"maintitle":"The role of stress in IBS symptom severity","originalId":["oai:repository.ffri.uniri.hr:ffri_1182","oai:hrcak.srce.hr:156331","oai:doaj.org/article:4394c5a4f62849ffac7ea485a91540a3"],"pid":[],"projects":[{"code":"009-0092660-2655","funder":{"jurisdiction":"HR","name":"Ministry of Science, Education and Sports of the Republic of Croatia (MSES)","shortName":"MZOS"},"id":"40|irb_hr______::ad496254144c27606e4058841e060fa0","provenance":{"provenance":"Harvested","trust":"0.900000000000000022"},"title":"Psychosomatic aspects of chronic functional and inflammatory bowel diseases"}],"publicationdate":"2016-04-01","subjects":[{"provenance":{"provenance":"Harvested","trust":"0.9"},"subject":{"scheme":"keyword","value":"irritable bowel syndrome"}},{"provenance":{"provenance":"Harvested","trust":"0.9"},"subject":{"scheme":"keyword","value":"symptom severity"}},{"provenance":{"provenance":"Harvested","trust":"0.9"},"subject":{"scheme":"keyword","value":"daily stress"}},{"provenance":{"provenance":"Harvested","trust":"0.9"},"subject":{"scheme":"keyword","value":"depression"}},{"provenance":{"provenance":"Harvested","trust":"0.9"},"subject":{"scheme":"keyword","value":"DRUŠTVENE ZNANOSTI. 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index 0000000000..61a9125876
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diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relations.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relation
similarity index 95%
rename from dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relations.json
rename to dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relation
index 6478a01ae1..fe14fccf61 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relations.json
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/match/relation
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new file mode 100644
index 0000000000..61a9125876
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/project
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rename to dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/funderresource/nomatch/relation
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated
new file mode 100644
index 0000000000..e0e03fc636
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diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
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index 0000000000..92d7e53c0b
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
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concept into practice might be a challenging task as it has to take into account previous “traditional” policies and approaches that have evaluated nature and biodiversity differently. Among them the Habitat (92/43/EC) and Bird Directives (79/409/EC), the Water Framework Directive (2000/60/EC), and the Noise Directive (2002/49/EC) have led to the evaluation/designation of areas in Europe with different criteria. In this study our goal was to understand how the ES capacity of an area is related to its designation and if areas with multiple designations have higher capacity in providing ES. We selected four catchments in Greece with a great variety of characteristics covering over 25% of the national territory. Inside the catchments we assessed the ES capacity (following the methodology of Burkhard et al. 2009) of areas designated as Natura 2000 sites, Quiet areas and Wetlands or Water bodies and found those areas that have multiple designations. Data were analyzed by GLM to reveal differences regarding the ES capacity among the different types of areas. We also investigated by PCA synergies and trade-offs among different kinds of ES and tested for correlations among landscape properties, such as elevation, aspect and slope and the ES potential. Our results show that areas with different types or multiple designations have a different capacity in providing ES. Areas of one designation type (Protected or Quiet Areas) had in general intermediate scores in most ES but scores were higher compared to areas with no designation, which displayed stronger capacity in provisioning services. Among Protected Areas and Quiet Areas the latter scored better in general. Areas that combined both designation types (Protected and Quiet Areas) showed the highest capacity in 13 out of 29 ES, that were mostly linked with natural and forest ecosystems. We found significant synergies among most regulating, supporting and cultural ES which in turn display trade-offs with provisioning services. The different ES are spatially related and display strong correlation with landscape properties, such as elevation and slope.  We suggest that the designation status of an area can be used as an alternative tool for environmental policy, indicating the capacity for ES provision. Multiple designations of areas can be used as proxies for locating ES “hotspots”. 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+{"collectedfrom":[{"key":"10|openaire____::6ac933301a3933c8a22ceebea7000326","value":"Academy of Finland","dataInfo":null}],"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}},"lastupdatetimestamp":1590964602807,"id":"40|aka_________::383058c90d19b8a47700360ee9739457","originalId":["aka_________::320207"],"pid":[],"dateofcollection":"2019-01-24","dateoftransformation":"2020-03-05","extraInfo":[],"oaiprovenance":null,"websiteurl":null,"code":{"value":"320207","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"acronym":null,"title":{"value":"Circular Economy Catalysts: From Innovation to Business Ecosystems  / Consortium: CICAT2025","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"startdate":null,"enddate":null,"callidentifier":{"value":"SRC 2018 Keys to Sustainable Growth, supplementary call, second stage STN","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"keywords":null,"duration":{"value":"0","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"ecsc39":{"value":"false","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"oamandatepublications":{"value":"false","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"ecarticle29_3":{"value":"false","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"subjects":[],"fundingtree":[{"value":"<fundingtree><funder>\n         <id>aka_________::AKA</id>\n         <shortname>AKA</shortname>\n         <name>Academy of Finland</name>\n         <originalname>Academy of Finland</originalname>\n         <jurisdiction>FI</jurisdiction>\n      </funder></fundingtree>","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"contracttype":null,"optional1":{"value":"536,503 €","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"optional2":null,"jsonextrainfo":{"value":"{}","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.900000000000000022","inferenceprovenance":null,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"sysimport:crosswalk:entityregistry","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"contactfullname":null,"contactfax":null,"contactphone":null,"contactemail":null,"summary":null,"currency":null,"totalcost":0.0,"fundedamount":0.0}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels/relation b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels/relation
new file mode 100644
index 0000000000..d829e66abb
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels/relation
@@ -0,0 +1,8 @@
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395831891,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::0f7d119de1f656b5763a16acf876fed6","subRelType":"outcome","source":"50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb","validated":true, "validationDate":"2021-08-06"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395831891,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::03376222b28a3aebf2730ac514818d04","subRelType":"outcome","source":"50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb","validated":true, "validationDate":"2021-08-05"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395839728,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::0f7d119de1f656b5763a16acf876fed6","subRelType":"outcome","source":"50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80","validated":true, "validationDate":"2021-08-04"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395836359,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::7713935a3e4c65f30fcc6b064f212051","subRelType":"outcome","source":"50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80","validated":true, "validationDate":"2021-08-03"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395834612,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::7a1099637c8ec85097e185a00bd4f877","subRelType":"outcome","source":"50|dedup_wf_001::400872751d497a6ff9c7e7aba67d327e","validated":true, "validationDate":"2021-08-02"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395834612,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::7a1099637c8ec85097e185a00bd4f877","subRelType":"outcome","source":"50|dedup_wf_001::400872751d497a6ff9c7e7aba67d327e","validated":true, "validationDate":"2021-08-01"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395828225,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::87bc20a437817d73c2d64555d225e85b","subRelType":"outcome","source":"50|dedup_wf_001::bc92b920df0f280041a512a7912130cf","validated":true, "validationDate":"2021-07-31"}
+{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"iis::document_referencedProjects","inferred":true,"invisible":false,"provenanceaction":{"classid":"iis","classname":"iis","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.6573"},"lastupdatetimestamp":1590395828225,"properties":[],"relClass":"isProducedBy","relType":"resultProject","target":"40|aka_________::87bc20a437817d73c2d64555d225e85b","subRelType":"outcome","source":"50|dedup_wf_001::bc92b920df0f280041a512a7912130cf","validated":true, "validationDate":"2021-07-30"}
\ No newline at end of file
diff --git a/pom.xml b/pom.xml
index 433c880930..3d6c3b0b75 100644
--- a/pom.xml
+++ b/pom.xml
@@ -741,7 +741,7 @@
 		<mockito-core.version>3.3.3</mockito-core.version>
 		<mongodb.driver.version>3.4.2</mongodb.driver.version>
 		<vtd.version>[2.12,3.0)</vtd.version>
-		<dhp-schemas.version>[2.7.15]</dhp-schemas.version>
+		<dhp-schemas.version>2.7.17-SNAPSHOT</dhp-schemas.version>
 		<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
 		<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
 		<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>

From eff499af9f869172ce1b63814f42dc4ce0fd0ac7 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 9 Aug 2021 11:12:30 +0200
Subject: [PATCH 069/106] added new tests and changed the test example

---
 .../dhp/oa/graph/dump/DumpJobTest.java        | 56 ++++++++++++++++++-
 .../resultDump/publication_extendedinstance   |  2 +-
 2 files changed, 56 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index 39454192eb..d7c247499a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -308,6 +308,60 @@ public class DumpJobTest {
 
 //TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
 
+	}
+
+	@Test
+	public void testPublicationExtendedInstance2Community() throws JsonProcessingException {
+
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+
+		Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
+
+		//the common fields in the result have been checked with the test below. Now checking only
+		// community specific fields
+
+		CommunityResult cr = verificationDataset.first();
+
+		Assertions.assertEquals(1, cr.getContext().size());
+		Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
+		Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
+		Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
+		Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
+		Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
+
+		Assertions.assertEquals(1, cr.getCollectedfrom().size());
+		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
+		Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
+
+		Assertions.assertEquals(1, cr.getInstance().size());
+		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
+		Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
+		Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
+		Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
+
+
 	}
 
 	@Test
@@ -337,7 +391,6 @@ public class DumpJobTest {
 				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
-		verificationDataset.show(false);
 
 		GraphResult gr = verificationDataset.first();
 
@@ -472,6 +525,7 @@ public class DumpJobTest {
 				.get(ModelConstants.ACCESS_RIGHT_OPEN)));
 		Assertions.assertTrue(instance.getAccessright().getLabel().equals(ModelConstants.ACCESS_RIGHT_OPEN));
 		Assertions.assertTrue(instance.getAccessright().getOpenAccessRoute().equals(OpenAccessRoute.green));
+		Assertions.assertTrue(instance.getType().equals("Article"));
 		Assertions.assertEquals(2, instance.getUrl().size());
 		Assertions.assertTrue(instance.getUrl().contains("https://doi.org/10.3897/oneeco.2.e13718")
 				&& instance.getUrl().contains("https://oneecosystem.pensoft.net/article/13718/"));
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
index 92d7e53c0b..043be7b1a9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance
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Among them the Habitat (92/43/EC) and Bird Directives (79/409/EC), the Water Framework Directive (2000/60/EC), and the Noise Directive (2002/49/EC) have led to the evaluation/designation of areas in Europe with different criteria. In this study our goal was to understand how the ES capacity of an area is related to its designation and if areas with multiple designations have higher capacity in providing ES. We selected four catchments in Greece with a great variety of characteristics covering over 25% of the national territory. Inside the catchments we assessed the ES capacity (following the methodology of Burkhard et al. 2009) of areas designated as Natura 2000 sites, Quiet areas and Wetlands or Water bodies and found those areas that have multiple designations. Data were analyzed by GLM to reveal differences regarding the ES capacity among the different types of areas. We also investigated by PCA synergies and trade-offs among different kinds of ES and tested for correlations among landscape properties, such as elevation, aspect and slope and the ES potential. Our results show that areas with different types or multiple designations have a different capacity in providing ES. Areas of one designation type (Protected or Quiet Areas) had in general intermediate scores in most ES but scores were higher compared to areas with no designation, which displayed stronger capacity in provisioning services. Among Protected Areas and Quiet Areas the latter scored better in general. Areas that combined both designation types (Protected and Quiet Areas) showed the highest capacity in 13 out of 29 ES, that were mostly linked with natural and forest ecosystems. We found significant synergies among most regulating, supporting and cultural ES which in turn display trade-offs with provisioning services. The different ES are spatially related and display strong correlation with landscape properties, such as elevation and slope.  We suggest that the designation status of an area can be used as an alternative tool for environmental policy, indicating the capacity for ES provision. Multiple designations of areas can be used as proxies for locating ES “hotspots”. This integration of “traditional” evaluation and designation and the “newer” ES concept forms a time- and cost-effective way to be adopted by stakeholders and policy-makers in order to start complying with new standards and demands for nature conservation and environmental management.","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"dateofacceptance":{"value":"2017-01-01","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"publisher":{"value":"Pensoft Publishers","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"embargoenddate":null,"source":[{"value":"One Ecosystem 2: e13718","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"fulltext":[],"format":[{"value":"text/html","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"contributor":[],"resourcetype":null,"coverage":[],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"context":[],"externalReference":[],"instance":[{"license":null,"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":"green"},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd","value":"One Ecosystem","dataInfo":null},"url":["https://doi.org/10.3897/oneeco.2.e13718","https://oneecosystem.pensoft.net/article/13718/"],"distributionlocation":"","collectedfrom":{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft","dataInfo":null},"pid":[],"alternateIdentifier":[{"value":"10.3897/oneeco.2.e13718","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"dateofacceptance":{"value":"2017-01-01","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"processingchargeamount":null,"processingchargecurrency":null,"refereed":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:review_levels","schemename":"dnet:review_levels"}}],"journal":{"name":"One Ecosystem","issnPrinted":"","issnOnline":"2367-8194","issnLinking":"","ep":"","iss":"","sp":"","vol":"","edition":"","conferenceplace":null,"conferencedate":null,"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}}
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ID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"0000-0001-6651-1178","qualifier":{"classid":"mag","classname":"Open Researcher and Contributor ID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"0000-0001-6651-1178","qualifier":{"classid":"orcid_pending","classname":"Open Researcher and Contributor ID","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"affiliation":null}],"resulttype":{"classid":"publication","classname":"publication","schemeid":"dnet:result_typologies","schemename":"dnet:result_typologies"},"language":{"classid":"eng","classname":"English","schemeid":"dnet:languages","schemename":"dnet:languages"},"country":[{"dataInfo":null, "classid":"IT", "classname":"Italy","schemeid":"fake","schemename":"fake"}],"subject":[{"value":"Ecosystem Services hotspots","qualifier":{"classid":"ACM","classname":"ACM Computing Classification System","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Natura 2000","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Quiet Protected Areas","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Biodiversity","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Agriculture","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Elevation","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Slope","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"Ecosystem Service trade-offs and synergies","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":" cultural services","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"provisioning services","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"regulating services","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},{"value":"supporting services","qualifier":{"classid":"","classname":"","schemeid":"","schemename":""},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"title":[{"value":"Ecosystem Service capacity is higher in areas of multiple designation types","qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"relevantdate":[],"description":[{"value":"The implementation of the Ecosystem Service (ES) concept into practice might be a challenging task as it has to take into account previous “traditional” policies and approaches that have evaluated nature and biodiversity differently. Among them the Habitat (92/43/EC) and Bird Directives (79/409/EC), the Water Framework Directive (2000/60/EC), and the Noise Directive (2002/49/EC) have led to the evaluation/designation of areas in Europe with different criteria. In this study our goal was to understand how the ES capacity of an area is related to its designation and if areas with multiple designations have higher capacity in providing ES. We selected four catchments in Greece with a great variety of characteristics covering over 25% of the national territory. Inside the catchments we assessed the ES capacity (following the methodology of Burkhard et al. 2009) of areas designated as Natura 2000 sites, Quiet areas and Wetlands or Water bodies and found those areas that have multiple designations. Data were analyzed by GLM to reveal differences regarding the ES capacity among the different types of areas. We also investigated by PCA synergies and trade-offs among different kinds of ES and tested for correlations among landscape properties, such as elevation, aspect and slope and the ES potential. Our results show that areas with different types or multiple designations have a different capacity in providing ES. Areas of one designation type (Protected or Quiet Areas) had in general intermediate scores in most ES but scores were higher compared to areas with no designation, which displayed stronger capacity in provisioning services. Among Protected Areas and Quiet Areas the latter scored better in general. Areas that combined both designation types (Protected and Quiet Areas) showed the highest capacity in 13 out of 29 ES, that were mostly linked with natural and forest ecosystems. We found significant synergies among most regulating, supporting and cultural ES which in turn display trade-offs with provisioning services. The different ES are spatially related and display strong correlation with landscape properties, such as elevation and slope.  We suggest that the designation status of an area can be used as an alternative tool for environmental policy, indicating the capacity for ES provision. Multiple designations of areas can be used as proxies for locating ES “hotspots”. This integration of “traditional” evaluation and designation and the “newer” ES concept forms a time- and cost-effective way to be adopted by stakeholders and policy-makers in order to start complying with new standards and demands for nature conservation and environmental management.","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"dateofacceptance":{"value":"2017-01-01","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"publisher":{"value":"Pensoft Publishers","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"embargoenddate":null,"source":[{"value":"One Ecosystem 2: e13718","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"fulltext":[],"format":[{"value":"text/html","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"contributor":[],"resourcetype":null,"coverage":[],"bestaccessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Inferred by OpenAIRE","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"}],"id":"dh-ch"}],"externalReference":[],"instance":[{"license":null,"accessright":{"classid":"OPEN","classname":"Open Access","schemeid":"dnet:access_modes","schemename":"dnet:access_modes","openAccessRoute":"green"},"instancetype":{"classid":"0001","classname":"Article","schemeid":"dnet:publication_resource","schemename":"dnet:publication_resource"},"hostedby":{"key":"10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd","value":"One Ecosystem","dataInfo":null},"url":["https://doi.org/10.3897/oneeco.2.e13718","https://oneecosystem.pensoft.net/article/13718/"],"distributionlocation":"","collectedfrom":{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft","dataInfo":null},"pid":[],"alternateIdentifier":[{"value":"10.3897/oneeco.2.e13718","qualifier":{"classid":"doi","classname":"doi","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}],"dateofacceptance":{"value":"2017-01-01","dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}},"processingchargeamount":null,"processingchargecurrency":null,"refereed":{"classid":"0001","classname":"peerReviewed","schemeid":"dnet:review_levels","schemename":"dnet:review_levels"}}],"journal":{"name":"One Ecosystem","issnPrinted":"","issnOnline":"2367-8194","issnLinking":"","ep":"","iss":"","sp":"","vol":"","edition":"","conferenceplace":null,"conferencedate":null,"dataInfo":{"invisible":false,"inferred":false,"deletedbyinference":false,"trust":"0.9","inferenceprovenance":"","provenanceaction":{"classid":"sysimport:crosswalk:repository","classname":"sysimport:crosswalk:repository","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"}}}}
\ No newline at end of file

From bc9e3a06ba9a436d2bbe00d56accd78f55508abd Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 9 Aug 2021 15:46:06 +0200
Subject: [PATCH 070/106] Graph Dump - extended the test class

---
 .../dhp/oa/graph/dump/DumpJobTest.java        | 609 +++++++++++-------
 1 file changed, 374 insertions(+), 235 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index d7c247499a..3a4f05fb59 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -145,227 +145,7 @@ public class DumpJobTest {
 	}
 
 	@Test
-	public void testDataset() {
-
-		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
-			.getPath();
-
-		final String communityMapPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-			.getPath();
-
-		DumpProducts dump = new DumpProducts();
-		dump
-			.run(
-				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		JavaRDD<CommunityResult> tmp = sc
-			.textFile(workingDir.toString() + "/result")
-			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
-
-		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
-
-		Assertions.assertEquals(90, verificationDataset.count());
-
-//		verificationDataset
-//			.filter("id = '50|DansKnawCris::1a960e20087cb46b93588e4e184e8a58'")
-//			.foreach((ForeachFunction<CommunityResult>) rec -> System.out.println(OBJECT_MAPPER.writeValueAsString(rec)));
-
-		Assertions
-			.assertTrue(
-				verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
-					.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
-					.count());
-
-		Assertions
-			.assertTrue(
-				verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
-					.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
-					.count());
-
-		Assertions
-			.assertTrue(
-				verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
-					.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
-					.count());
-
-		Assertions
-			.assertTrue(
-				verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
-					.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
-					.count());
-
-		Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
-
-		Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
-
-
-
-	}
-
-	@Test
-	public void testDataset2All() {
-
-		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
-			.getPath();
-
-		final String communityMapPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-			.getPath();
-
-		DumpProducts dump = new DumpProducts();
-		dump
-			.run(
-				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
-			.textFile(workingDir.toString() + "/result")
-			.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
-
-		org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
-			.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
-
-		Assertions.assertEquals(5, verificationDataset.count());
-
-		verificationDataset
-			.foreach((ForeachFunction<GraphResult>) res -> System.out.println(OBJECT_MAPPER.writeValueAsString(res)));
-	}
-
-	@Test
-	public void testDataset2Communities() {
-
-		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
-			.getPath();
-
-		final String communityMapPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-			.getPath();
-
-		DumpProducts dump = new DumpProducts();
-		dump
-			.run(
-				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
-				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		JavaRDD<CommunityResult> tmp = sc
-			.textFile(workingDir.toString() + "/result")
-			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
-
-		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
-
-		Assertions.assertEquals(0, verificationDataset.count());
-
-		verificationDataset.show(false);
-	}
-
-	@Test
-	public void testPublication() {
-
-		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
-			.getPath();
-
-		final String communityMapPath = getClass()
-			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-			.getPath();
-
-		DumpProducts dump = new DumpProducts();
-		dump
-			.run(
-				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		JavaRDD<CommunityResult> tmp = sc
-			.textFile(workingDir.toString() + "/result")
-			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
-
-		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
-
-		Assertions.assertEquals(74, verificationDataset.count());
-		verificationDataset.show(false);
-
-		Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
-
-//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
-
-	}
-
-	@Test
-	public void testPublicationExtendedInstance2Community() throws JsonProcessingException {
-
-		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
-				.getPath();
-
-		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
-
-		DumpProducts dump = new DumpProducts();
-		dump
-				.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		JavaRDD<CommunityResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
-
-		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
-
-		Assertions.assertEquals(1, verificationDataset.count());
-
-		Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
-
-		//the common fields in the result have been checked with the test below. Now checking only
-		// community specific fields
-
-		CommunityResult cr = verificationDataset.first();
-
-		Assertions.assertEquals(1, cr.getContext().size());
-		Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
-		Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
-		Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
-		Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
-		Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
-
-		Assertions.assertEquals(1, cr.getCollectedfrom().size());
-		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
-		Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
-
-		Assertions.assertEquals(1, cr.getInstance().size());
-		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
-		Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
-		Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
-		Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
-
-
-	}
-
-	@Test
-	public void testPublicationExtendedInstance(){
+	public void testPublicationDump(){
 		final String sourcePath = getClass()
 				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
 				.getPath();
@@ -519,7 +299,7 @@ public class DumpJobTest {
 		Assertions.assertEquals(0, instance.getPid().size());
 		Assertions.assertEquals(1, instance.getAlternateIdentifier().size());
 		Assertions.assertTrue(instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
-		&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
+				&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
 		Assertions.assertEquals(null, instance.getLicense());
 		Assertions.assertTrue(instance.getAccessright().getCode().equals(Constants.accessRightsCoarMap
 				.get(ModelConstants.ACCESS_RIGHT_OPEN)));
@@ -532,8 +312,379 @@ public class DumpJobTest {
 		Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
 		Assertions.assertEquals(null,instance.getArticleprocessingcharge());
 		Assertions.assertEquals("peerReviewed", instance.getRefereed());
+	}
 
 
+	@Test
+	public void testDatasetDump(){
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(false, sourcePath, workingDir.toString() + "/result",
+						communityMapPath, Dataset.class,
+						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<GraphResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+
+		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+
+		Assertions.assertEquals(1, verificationDataset.filter("type = 'dataset'").count());
+
+		//the common fields in the result have been already checked. Now checking only
+		// community specific fields
+
+		GraphResult gr = verificationDataset.first();
+
+		Assertions.assertEquals(2, gr.getGeolocation().size());
+		Assertions.assertEquals(2, gr.getGeolocation().stream().filter(gl -> gl.getBox().equals("")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals("")).count());
+		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals("")).count());
+
+		Assertions.assertEquals("1024Gb", gr.getSize());
+
+		Assertions.assertEquals("1.01", gr.getVersion());
+
+		Assertions.assertEquals(null, gr.getContainer());
+		Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
+		Assertions.assertEquals(null, gr.getProgrammingLanguage());
+		Assertions.assertEquals(null, gr.getDocumentationUrl());
+		Assertions.assertEquals(null, gr.getContactperson());
+		Assertions.assertEquals(null, gr.getContactgroup());
+		Assertions.assertEquals(null, gr.getTool());
+
+	}
+
+	@Test
+	public void testSoftwareDump(){
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(false, sourcePath, workingDir.toString() + "/result",
+						communityMapPath, Software.class,
+						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+
+		JavaRDD<GraphResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+
+		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+
+		Assertions.assertEquals(1, verificationDataset.filter("type = 'software'").count());
+
+		GraphResult gr = verificationDataset.first();
+
+		Assertions.assertEquals(2, gr.getDocumentationUrl().size());
+		Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_1"));
+		Assertions.assertTrue(gr.getDocumentationUrl().contains("doc_url_2"));
+
+		Assertions.assertEquals("code_repo", gr.getCodeRepositoryUrl());
+
+		Assertions.assertEquals("perl", gr.getProgrammingLanguage());
+
+
+		Assertions.assertEquals(null, gr.getContainer());
+		Assertions.assertEquals(null, gr.getContactperson());
+		Assertions.assertEquals(null, gr.getContactgroup());
+		Assertions.assertEquals(null, gr.getTool());
+		Assertions.assertEquals(null, gr.getGeolocation());
+		Assertions.assertEquals(null, gr.getSize());
+		Assertions.assertEquals(null, gr.getVersion());
+
+	}
+
+	@Test
+	public void testOrpDump(){
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(false, sourcePath, workingDir.toString() + "/result",
+						communityMapPath, OtherResearchProduct.class,
+						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+
+		JavaRDD<GraphResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+
+		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+
+		Assertions.assertEquals(1, verificationDataset.filter("type = 'other'").count());
+
+		GraphResult gr = verificationDataset.first();
+
+		Assertions.assertEquals(2, gr.getContactperson().size());
+		Assertions.assertTrue(gr.getContactperson().contains(("contact_person1")));
+		Assertions.assertTrue(gr.getContactperson().contains(("contact_person2")));
+
+		Assertions.assertEquals(1, gr.getContactgroup().size());
+		Assertions.assertTrue(gr.getContactgroup().contains(("contact_group")));
+
+		Assertions.assertEquals(2, gr.getTool().size());
+		Assertions.assertTrue(gr.getTool().contains("tool1"));
+		Assertions.assertTrue(gr.getTool().contains("tool2"));
+
+
+		Assertions.assertEquals(null, gr.getContainer());
+		Assertions.assertEquals(null, gr.getDocumentationUrl());
+		Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
+		Assertions.assertEquals(null, gr.getProgrammingLanguage());
+		Assertions.assertEquals(null, gr.getGeolocation());
+		Assertions.assertEquals(null, gr.getSize());
+		Assertions.assertEquals(null, gr.getVersion());
+
+	}
+
+	@Test
+	public void testPublicationDumpCommunity() throws JsonProcessingException {
+
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
+				.getPath();
+
+		final String communityMapPath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+				.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+				.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+						CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		Assertions.assertEquals(1, verificationDataset.count());
+
+		Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
+
+		//the common fields in the result have been already checked. Now checking only
+		// community specific fields
+
+		CommunityResult cr = verificationDataset.first();
+
+		Assertions.assertEquals(1, cr.getContext().size());
+		Assertions.assertEquals("dh-ch", cr.getContext().get(0).getCode());
+		Assertions.assertEquals("Digital Humanities and Cultural Heritage", cr.getContext().get(0).getLabel());
+		Assertions.assertEquals(1, cr.getContext().get(0).getProvenance().size());
+		Assertions.assertEquals("Inferred by OpenAIRE", cr.getContext().get(0).getProvenance().get(0).getProvenance());
+		Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
+
+		Assertions.assertEquals(1, cr.getCollectedfrom().size());
+		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
+		Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
+
+		Assertions.assertEquals(1, cr.getInstance().size());
+		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
+		Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
+		Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
+		Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
+
+
+	}
+
+	@Test
+	public void testDataset() {
+
+		final String sourcePath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset.json")
+			.getPath();
+
+		final String communityMapPath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+			.run(
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
+				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		Assertions.assertEquals(90, verificationDataset.count());
+
+		Assertions
+			.assertTrue(
+				verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
+					.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
+					.count());
+
+		Assertions
+			.assertTrue(
+				verificationDataset.filter("bestAccessright.code = 'c_16ec'").count() == verificationDataset
+					.filter("bestAccessright.code = 'c_16ec' and bestAccessright.label = 'RESTRICTED'")
+					.count());
+
+		Assertions
+			.assertTrue(
+				verificationDataset.filter("bestAccessright.code = 'c_14cb'").count() == verificationDataset
+					.filter("bestAccessright.code = 'c_14cb' and bestAccessright.label = 'CLOSED'")
+					.count());
+
+		Assertions
+			.assertTrue(
+				verificationDataset.filter("bestAccessright.code = 'c_f1cf'").count() == verificationDataset
+					.filter("bestAccessright.code = 'c_f1cf' and bestAccessright.label = 'EMBARGO'")
+					.count());
+
+		Assertions.assertTrue(verificationDataset.filter("size(context) > 0").count() == 90);
+
+		Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
+
+
+
+	}
+
+	@Test
+	public void testDataset2All() {
+
+		final String sourcePath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
+			.getPath();
+
+		final String communityMapPath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+			.run(
+				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> tmp = sc
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
+
+		org.apache.spark.sql.Dataset<eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult> verificationDataset = spark
+			.createDataset(tmp.rdd(), Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult.class));
+
+		Assertions.assertEquals(5, verificationDataset.count());
+
+	}
+
+	@Test
+	public void testDataset2Communities() {
+
+		final String sourcePath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_cleaned")
+			.getPath();
+
+		final String communityMapPath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+			.run(
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Dataset.class,
+				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		Assertions.assertEquals(0, verificationDataset.count());
+
+
+	}
+
+	@Test
+	public void testPublication() {
+
+		final String sourcePath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication.json")
+			.getPath();
+
+		final String communityMapPath = getClass()
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
+
+		DumpProducts dump = new DumpProducts();
+		dump
+			.run(
+				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		Assertions.assertEquals(74, verificationDataset.count());
+		verificationDataset.show(false);
+
+		Assertions.assertEquals(74, verificationDataset.filter("type = 'publication'").count());
+
 	}
 
 	@Test
@@ -566,9 +717,7 @@ public class DumpJobTest {
 		Assertions.assertEquals(6, verificationDataset.count());
 
 		Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
-		verificationDataset.show(false);
 
-//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
 
 	}
 
@@ -602,9 +751,6 @@ public class DumpJobTest {
 		Assertions.assertEquals(3, verificationDataset.count());
 
 		Assertions.assertEquals(3, verificationDataset.filter("type = 'other'").count());
-		verificationDataset.show(false);
-
-//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
 
 	}
 
@@ -621,7 +767,6 @@ public class DumpJobTest {
 		DumpProducts dump = new DumpProducts();
 		dump
 			.run(
-				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
 				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
 				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
 
@@ -668,7 +813,7 @@ public class DumpJobTest {
 			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(23, verificationDataset.count());
-		// verificationDataset.show(false);
+
 
 		Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
 
@@ -688,12 +833,6 @@ public class DumpJobTest {
 		Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
 
 
-
-//		verificationDataset.filter("bestAccessright.code = 'c_abf2'").count() == verificationDataset
-//				.filter("bestAccessright.code = 'c_abf2' and bestAccessright.label = 'OPEN'")
-//				.count()
-
-//TODO verify value and name of the fields for vocab related value (i.e. accessright, bestaccessright)
 	}
 
 }

From 8daaa32e90f1ddc88a24c2603723230ae57cec9a Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 9 Aug 2021 15:46:29 +0200
Subject: [PATCH 071/106] Graph Dump - added resources for testing

---
 .../dhp/oa/graph/dump/resultDump/dataset_extendedinstance        | 1 +
 .../eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance | 1 +
 .../dhp/oa/graph/dump/resultDump/software_extendedinstance       | 1 +
 3 files changed, 3 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance
new file mode 100644
index 0000000000..14ca9c10cd
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance
@@ -0,0 +1 @@
+{"author":[{"affiliation":[],"fullname":"Santana Quintero, Mario","name":"Mario","pid":[],"rank":1,"surname":"Santana Quintero"},{"affiliation":[],"fullname":"Giansante, Christian","name":"Christian","pid":[],"rank":2,"surname":"Giansante"},{"affiliation":[],"fullname":"Sharp, Rachel","name":"Rachel","pid":[],"rank":3,"surname":"Sharp"},{"affiliation":[],"fullname":"Bernard, Tristan","name":"Tristan","pid":[],"rank":4,"surname":"Bernard"},{"affiliation":[],"fullname":"Waheed, Khadija","name":"Khadija","pid":[],"rank":5,"surname":"Waheed"},{"affiliation":[],"fullname":"Merchant, Arkoun","name":"Arkoun","pid":[],"rank":6,"surname":"Merchant"},{"affiliation":[],"fullname":"Lapko, Spencer","name":"Spencer","pid":[],"rank":7,"surname":"Lapko"}],"bestaccessright":{"classid":"RESTRICTED","classname":"Restricted","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"collectedfrom":[{"key":"10|openaire____::e783372970a1dc066ce99c673090ff88","value":"Federated Research Data Repository / Dépôt fédéré de données de recherche"}],"context":[],"contributor":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Federated Research Data Repository"},{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Dépôt fédéré de données de recherche"}],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2020-07-05"},"dateofcollection":"2021-07-11T02:32:34Z","dateoftransformation":"2021-07-11T11:14:27.539Z","description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Although 18b York St does not have an official heritage designation, it has important social ties with the Ottawa Francophone community, significant contextual values, and played a role in the Byward Market's economic history.  18 York St was built on October 24th, 1877, only 23 years after Bytown's official declaration as a city. It's architect, J. Bowes, designed approximately 30 other buildings in the Ottawa area during his career. The four-storey, masonry clad building was originally designed to house L'Institut Canadien Français d'Ottawa. This organization played a key role in the advancement to officially make Ottawa a bilingual city. Nearly a century later, 18 York St was acquired by the NCC after it had been gutted by a fire in 1970, and was rehabilitated into a Franco-Ontarian theatre. 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invariant"},{"qualifier":{"classid":"keyword","classname":"keyword","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"Slater-Koster"},{"qualifier":{"classid":"keyword","classname":"keyword","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"Lavenberg-Marquardt"},{"qualifier":{"classid":"keyword","classname":"keyword","schemeid":"dnet:subject_classification_typologies","schemename":"dnet:subject_classification_typologies"},"value":"Parameter fitting"}],"title":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"qualifier":{"classid":"main title","classname":"main title","schemeid":"dnet:dataCite_title","schemename":"dnet:dataCite_title"},"value":"Tbfit: Tight-Binding Fitting Package"}], "codeRepositoryUrl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"code_repo"}}
\ No newline at end of file

From bd0d7bfba70bff61b1ca96474d7b39059eaff796 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 9 Aug 2021 16:36:17 +0200
Subject: [PATCH 072/106] Graph Dump - added resources for testing addition of
 validation date in project for communityresult

---
 .../dhp/oa/graph/dump/addProjectInfo/preparedInfoValidated      | 2 ++
 .../dhp/oa/graph/dump/addProjectInfo/publication_extendedmodel  | 2 ++
 2 files changed, 4 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/preparedInfoValidated
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/publication_extendedmodel

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/preparedInfoValidated b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/preparedInfoValidated
new file mode 100644
index 0000000000..588bec8040
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/preparedInfoValidated
@@ -0,0 +1,2 @@
+{"resultId":"50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2","projectsList":[{"id":"40|aka_________::0f7d119de1f656b5763a16acf876fed6","code":"123455","acronym":null,"title":"Business services for rural bioenergy entrepreneurship in Finland: a network analysis approach","funder":{"shortName":"AKA","name":"Academy of Finland","jurisdiction":"FI","fundingStream":null},"provenance":{"provenance":"sysimport:crosswalk:entityregistry","trust":"0.900000000000000022"},"validated":{"validationDate":"2021-08-06","validatedByFunder":true}},{"id":"40|aka_________::03376222b28a3aebf2730ac514818d04","code":"119027","acronym":null,"title":"EGFR Tyrosine Kinase Inhibitors and LKB1 Tumor Suppressor in Non-Small-Cell Lung Cancer","funder":{"shortName":"EC","name":"European Commission","jurisdiction":"EU","fundingStream":"H2020"},"provenance":{"provenance":"sysimport:crosswalk:entityregistry","trust":"0.900000000000000022"},"validated":null}]}
+{"resultId":"50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80","projectsList":[{"id":"40|aka_________::0f7d119de1f656b5763a16acf876fed6","code":"123455","acronym":null,"title":"Business services for rural bioenergy entrepreneurship in Finland: a network analysis approach","funder":{"shortName":"AKA","name":"Academy of Finland","jurisdiction":"FI","fundingStream":null},"provenance":{"provenance":"sysimport:crosswalk:entityregistry","trust":"0.900000000000000022"},"validated":{"validationDate":"2021-08-04","validatedByFunder":true}}]}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/publication_extendedmodel b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/publication_extendedmodel
new file mode 100644
index 0000000000..6b146405a9
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo/publication_extendedmodel
@@ -0,0 +1,2 @@
+{"measures":[{"key":"influence","value":"1.62759106106e-08"},{"key":"popularity","value":"0.22519296"}],"author":[{"fullname":"Nikolaidou,Charitini","name":"Charitini","surname":"Nikolaidou","rank":1,"pid":null},{"fullname":"Votsi,Nefta","name":"Nefta","surname":"Votsi","rank":2,"pid":{"id":{"scheme":"orcid","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Sgardelis,Steanos","name":"Steanos","surname":"Sgardelis","rank":3,"pid":{"id":{"scheme":"orcid_pending","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Halley,John","name":"John","surname":"Halley","rank":4,"pid":null},{"fullname":"Pantis,John","name":"John","surname":"Pantis","rank":5,"pid":{"id":{"scheme":"orcid","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Tsiafouli,Maria","name":"Maria","surname":"Tsiafouli","rank":6,"pid":{"id":{"scheme":"orcid_pending","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}}],"type":"publication","language":{"code":"eng","label":"English"},"country":[{"code":"IT","label":"Italy","provenance":null}],"subjects":[{"subject":{"scheme":"ACM","value":"Ecosystem Services hotspots"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Natura 2000"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Quiet Protected Areas"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Biodiversity"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Agriculture"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Elevation"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Slope"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Ecosystem Service trade-offs and synergies"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":" cultural services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"provisioning services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"regulating services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"supporting services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}],"maintitle":"Ecosystem Service capacity is higher in areas of multiple designation types","subtitle":null,"description":["The implementation of the Ecosystem Service (ES) concept into practice might be a challenging task as it has to take into account previous “traditional” policies and approaches that have evaluated nature and biodiversity differently. 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We also investigated by PCA synergies and trade-offs among different kinds of ES and tested for correlations among landscape properties, such as elevation, aspect and slope and the ES potential. Our results show that areas with different types or multiple designations have a different capacity in providing ES. Areas of one designation type (Protected or Quiet Areas) had in general intermediate scores in most ES but scores were higher compared to areas with no designation, which displayed stronger capacity in provisioning services. Among Protected Areas and Quiet Areas the latter scored better in general. Areas that combined both designation types (Protected and Quiet Areas) showed the highest capacity in 13 out of 29 ES, that were mostly linked with natural and forest ecosystems. We found significant synergies among most regulating, supporting and cultural ES which in turn display trade-offs with provisioning services. The different ES are spatially related and display strong correlation with landscape properties, such as elevation and slope.  We suggest that the designation status of an area can be used as an alternative tool for environmental policy, indicating the capacity for ES provision. Multiple designations of areas can be used as proxies for locating ES “hotspots”. This integration of “traditional” evaluation and designation and the “newer” ES concept forms a time- and cost-effective way to be adopted by stakeholders and policy-makers in order to start complying with new standards and demands for nature conservation and environmental management."],"publicationdate":"2017-01-01","publisher":"Pensoft Publishers","embargoenddate":null,"source":["One Ecosystem 2: e13718"],"format":["text/html"],"contributor":[],"coverage":[],"bestaccessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/","openAccessRoute":null},"container":{"name":"One Ecosystem","issnPrinted":"","issnOnline":"2367-8194","issnLinking":"","ep":"","iss":"","sp":"","vol":"","edition":"","conferenceplace":null,"conferencedate":null},"documentationUrl":null,"codeRepositoryUrl":null,"programmingLanguage":null,"contactperson":null,"contactgroup":null,"tool":null,"size":null,"version":null,"geolocation":null,"id":"50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2","originalId":["50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2","10.3897/oneeco.2.e13718"],"pid":[{"scheme":"doi","value":"10.1016/j.triboint.2014.05.004"}],"dateofcollection":"2020-03-23T00:20:51.392Z","lastupdatetimestamp":1628257970612,"projects":null,"context":[{"code":"dh-ch","label":"Digital Humanities and Cultural Heritage","provenance":[{"provenance":"Inferred by OpenAIRE","trust":"0.9"}]}],"collectedfrom":[{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft"}],"instance":[{"pid":[],"alternateIdentifier":[{"scheme":"doi","value":"10.3897/oneeco.2.e13718"}],"license":null,"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/","openAccessRoute":"green"},"type":"Article","url":["https://doi.org/10.3897/oneeco.2.e13718","https://oneecosystem.pensoft.net/article/13718/"],"articleprocessingcharge":null,"publicationdate":"2017-01-01","refereed":"peerReviewed","hostedby":{"key":"10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd","value":"One Ecosystem"},"collectedfrom":{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft"}}]}
+{"measures":[{"key":"influence","value":"1.62759106106e-08"},{"key":"popularity","value":"0.22519296"}],"author":[{"fullname":"Nikolaidou,Charitini","name":"Charitini","surname":"Nikolaidou","rank":1,"pid":null},{"fullname":"Votsi,Nefta","name":"Nefta","surname":"Votsi","rank":2,"pid":{"id":{"scheme":"orcid","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Sgardelis,Steanos","name":"Steanos","surname":"Sgardelis","rank":3,"pid":{"id":{"scheme":"orcid_pending","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Halley,John","name":"John","surname":"Halley","rank":4,"pid":null},{"fullname":"Pantis,John","name":"John","surname":"Pantis","rank":5,"pid":{"id":{"scheme":"orcid","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}},{"fullname":"Tsiafouli,Maria","name":"Maria","surname":"Tsiafouli","rank":6,"pid":{"id":{"scheme":"orcid_pending","value":"0000-0001-6651-1178"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}}],"type":"publication","language":{"code":"eng","label":"English"},"country":[{"code":"IT","label":"Italy","provenance":null}],"subjects":[{"subject":{"scheme":"ACM","value":"Ecosystem Services hotspots"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Natura 2000"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Quiet Protected Areas"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Biodiversity"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Agriculture"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Elevation"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Slope"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"Ecosystem Service trade-offs and synergies"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":" cultural services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"provisioning services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"regulating services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}},{"subject":{"scheme":"","value":"supporting services"},"provenance":{"provenance":"sysimport:crosswalk:repository","trust":"0.9"}}],"maintitle":"Ecosystem Service capacity is higher in areas of multiple designation types","subtitle":null,"description":["The implementation of the Ecosystem Service (ES) concept into practice might be a challenging task as it has to take into account previous “traditional” policies and approaches that have evaluated nature and biodiversity differently. Among them the Habitat (92/43/EC) and Bird Directives (79/409/EC), the Water Framework Directive (2000/60/EC), and the Noise Directive (2002/49/EC) have led to the evaluation/designation of areas in Europe with different criteria. In this study our goal was to understand how the ES capacity of an area is related to its designation and if areas with multiple designations have higher capacity in providing ES. We selected four catchments in Greece with a great variety of characteristics covering over 25% of the national territory. Inside the catchments we assessed the ES capacity (following the methodology of Burkhard et al. 2009) of areas designated as Natura 2000 sites, Quiet areas and Wetlands or Water bodies and found those areas that have multiple designations. Data were analyzed by GLM to reveal differences regarding the ES capacity among the different types of areas. We also investigated by PCA synergies and trade-offs among different kinds of ES and tested for correlations among landscape properties, such as elevation, aspect and slope and the ES potential. Our results show that areas with different types or multiple designations have a different capacity in providing ES. Areas of one designation type (Protected or Quiet Areas) had in general intermediate scores in most ES but scores were higher compared to areas with no designation, which displayed stronger capacity in provisioning services. Among Protected Areas and Quiet Areas the latter scored better in general. Areas that combined both designation types (Protected and Quiet Areas) showed the highest capacity in 13 out of 29 ES, that were mostly linked with natural and forest ecosystems. We found significant synergies among most regulating, supporting and cultural ES which in turn display trade-offs with provisioning services. The different ES are spatially related and display strong correlation with landscape properties, such as elevation and slope.  We suggest that the designation status of an area can be used as an alternative tool for environmental policy, indicating the capacity for ES provision. Multiple designations of areas can be used as proxies for locating ES “hotspots”. This integration of “traditional” evaluation and designation and the “newer” ES concept forms a time- and cost-effective way to be adopted by stakeholders and policy-makers in order to start complying with new standards and demands for nature conservation and environmental management."],"publicationdate":"2017-01-01","publisher":"Pensoft Publishers","embargoenddate":null,"source":["One Ecosystem 2: e13718"],"format":["text/html"],"contributor":[],"coverage":[],"bestaccessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/","openAccessRoute":null},"container":{"name":"One Ecosystem","issnPrinted":"","issnOnline":"2367-8194","issnLinking":"","ep":"","iss":"","sp":"","vol":"","edition":"","conferenceplace":null,"conferencedate":null},"documentationUrl":null,"codeRepositoryUrl":null,"programmingLanguage":null,"contactperson":null,"contactgroup":null,"tool":null,"size":null,"version":null,"geolocation":null,"id":"50|fakeoft_____::00ea4a1cd53806a97d62ea6bf268f2a2","originalId":["50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2","10.3897/oneeco.2.e13718"],"pid":[{"scheme":"doi","value":"10.1016/j.triboint.2014.05.004"}],"dateofcollection":"2020-03-23T00:20:51.392Z","lastupdatetimestamp":1628257970612,"projects":null,"context":[{"code":"dh-ch","label":"Digital Humanities and Cultural Heritage","provenance":[{"provenance":"Inferred by OpenAIRE","trust":"0.9"}]}],"collectedfrom":[{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft"}],"instance":[{"pid":[],"alternateIdentifier":[{"scheme":"doi","value":"10.3897/oneeco.2.e13718"}],"license":null,"accessright":{"code":"c_abf2","label":"OPEN","scheme":"http://vocabularies.coar-repositories.org/documentation/access_rights/","openAccessRoute":"green"},"type":"Article","url":["https://doi.org/10.3897/oneeco.2.e13718","https://oneecosystem.pensoft.net/article/13718/"],"articleprocessingcharge":null,"publicationdate":"2017-01-01","refereed":"peerReviewed","hostedby":{"key":"10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd","value":"One Ecosystem"},"collectedfrom":{"key":"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db","value":"Pensoft"}}]}
\ No newline at end of file

From a90bac3bc92d44f1628dd309ee5e7404b4b06e09 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 9 Aug 2021 16:36:54 +0200
Subject: [PATCH 073/106] Graph Dump - added method to test class to verify
 addition of validation date in projects for community result

---
 .../oa/graph/dump/UpdateProjectInfoTest.java  | 87 +++++++++++++++++++
 1 file changed, 87 insertions(+)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
index 20a46cee08..fd34433c6e 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
@@ -5,11 +5,17 @@ import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.HashMap;
+import java.util.logging.Filter;
+import java.util.stream.Collectors;
 
+import eu.dnetlib.dhp.schema.dump.oaf.community.Funder;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
 import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
 import org.apache.spark.sql.SparkSession;
@@ -135,4 +141,85 @@ public class UpdateProjectInfoTest {
 		resultExplodedProvenance.show(false);
 	}
 
+	@Test
+	public void testValidatedRelation() throws Exception{
+		final String sourcePath = getClass()
+				.getResource("/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo")
+				.getPath();
+
+		SparkUpdateProjectInfo.main(new String[] {
+				"-isSparkSessionManaged", Boolean.FALSE.toString(),
+				"-preparedInfoPath", sourcePath + "/preparedInfoValidated",
+				"-outputPath", workingDir.toString() + "/result",
+				"-sourcePath", sourcePath + "/publication_extendedmodel"
+		});
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		JavaRDD<CommunityResult> tmp = sc
+				.textFile(workingDir.toString() + "/result")
+				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+
+		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
+				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+
+		verificationDataset.show(false);
+
+		Assertions.assertEquals(2, verificationDataset.count());
+		verificationDataset.createOrReplaceTempView("dataset");
+
+		String query = "select id, MyT.code code, MyT.title title, MyT.funder.name funderName, MyT.funder.shortName funderShortName, "
+				+
+				"MyT.funder.jurisdiction funderJurisdiction, MyT.funder.fundingStream fundingStream, MyT.validated "
+				+ "from dataset " +
+				"lateral view explode(projects) p as MyT ";
+
+		org.apache.spark.sql.Dataset<Row> resultExplodedProvenance = spark.sql(query);
+
+		Assertions.assertEquals(2, resultExplodedProvenance.count());
+		resultExplodedProvenance.show(false);
+
+		Assertions
+				.assertEquals(
+						2,
+						resultExplodedProvenance.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2'").count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '123455'")
+								.count());
+
+		Assertions
+				.assertEquals(
+						1,
+						resultExplodedProvenance
+								.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '119027'")
+								.count());
+
+		Project project = verificationDataset
+		.map((MapFunction<CommunityResult, Project>) cr -> cr.getProjects().stream().filter(p -> p.getValidated() != null).collect(Collectors.toList()).get(0)
+		, Encoders.bean(Project.class)).first();
+
+		Assertions.assertTrue(project.getFunder().getName().equals("Academy of Finland"));
+		Assertions.assertTrue(project.getFunder().getShortName().equals("AKA"));
+		Assertions.assertTrue(project.getFunder().getJurisdiction().equals("FI"));
+		Assertions.assertTrue(project.getFunder().getFundingStream() == null);
+		Assertions.assertTrue(project.getValidated().getValidationDate().equals("2021-08-06"));
+
+
+		project = verificationDataset
+				.map((MapFunction<CommunityResult, Project>) cr -> cr.getProjects().stream().filter(p -> p.getValidated() == null).collect(Collectors.toList()).get(0)
+						, Encoders.bean(Project.class)).first();
+
+
+		Assertions.assertTrue(project.getFunder().getName().equals("European Commission"));
+		Assertions.assertTrue(project.getFunder().getShortName().equals("EC"));
+		Assertions.assertTrue(project.getFunder().getJurisdiction().equals("EU"));
+		Assertions.assertTrue(project.getFunder().getFundingStream().equals("H2020"));
+
+
+	}
+
 }

From c4ccd7b32c3ee272188bad034b6f0264c074bd88 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Fri, 1 Oct 2021 12:59:47 +0200
Subject: [PATCH 074/106] -

---
 .../dhp/oa/dedup/SparkWhitelistSimRels.java   |  196 +--
 .../dnetlib/dhp/oa/dedup/SparkDedupTest.java  | 1266 +++++++++--------
 .../eu/dnetlib/dhp/PropagationConstant.java   |   11 +-
 .../SparkOrcidToResultFromSemRelJob.java      |    7 +-
 ...kResultToCommunityFromOrganizationJob.java |    4 +-
 ...parkResultToCommunityThroughSemRelJob.java |    4 +-
 .../dhp/oa/graph/dump/ResultMapper.java       |   84 +-
 .../dhp/oa/graph/dump/SaveCommunityMap.java   |   10 +-
 .../community/SparkPrepareResultProject.java  |   10 +-
 .../dump/complete/DumpGraphEntities.java      |   25 +-
 .../dump/complete/QueryInformationSystem.java |    6 +-
 .../dump/complete/SparkDumpRelationJob.java   |    2 +-
 .../funderresults/SparkDumpFunderResults.java |   53 +-
 .../SparkResultLinkedToProject.java           |    1 -
 .../dhp/oa/graph/dump/DumpJobTest.java        |  380 +++--
 .../dump/PrepareResultProjectJobTest.java     |  152 +-
 .../oa/graph/dump/UpdateProjectInfoTest.java  |   83 +-
 .../graph/dump/complete/DumpRelationTest.java |   80 +-
 .../complete/QueryInformationSystemTest.java  |    8 +-
 .../dump/funderresult/SplitPerFunderTest.java |    4 +-
 .../provision/IndexRecordTransformerTest.java |    3 +-
 pom.xml                                       |    2 +-
 22 files changed, 1273 insertions(+), 1118 deletions(-)

diff --git a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkWhitelistSimRels.java b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkWhitelistSimRels.java
index fa7d335700..48ba8a6f6d 100644
--- a/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkWhitelistSimRels.java
+++ b/dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/SparkWhitelistSimRels.java
@@ -1,3 +1,4 @@
+
 package eu.dnetlib.dhp.oa.dedup;
 
 import java.io.IOException;
@@ -35,117 +36,124 @@ import scala.Tuple3;
 
 public class SparkWhitelistSimRels extends AbstractSparkAction {
 
-    private static final Logger log = LoggerFactory.getLogger(SparkCreateSimRels.class);
+	private static final Logger log = LoggerFactory.getLogger(SparkCreateSimRels.class);
 
-    private static final String WHITELIST_SEPARATOR = "####";
+	private static final String WHITELIST_SEPARATOR = "####";
 
-    public SparkWhitelistSimRels(ArgumentApplicationParser parser, SparkSession spark) {
-        super(parser, spark);
-    }
+	public SparkWhitelistSimRels(ArgumentApplicationParser parser, SparkSession spark) {
+		super(parser, spark);
+	}
 
-    public static void main(String[] args) throws Exception {
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkCreateSimRels.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/whitelistSimRels_parameters.json")));
-        parser.parseArgument(args);
+	public static void main(String[] args) throws Exception {
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateSimRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/whitelistSimRels_parameters.json")));
+		parser.parseArgument(args);
 
-        SparkConf conf = new SparkConf();
-        new SparkWhitelistSimRels(parser, getSparkSession(conf))
-                .run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl")));
-    }
+		SparkConf conf = new SparkConf();
+		new SparkWhitelistSimRels(parser, getSparkSession(conf))
+			.run(ISLookupClientFactory.getLookUpService(parser.get("isLookUpUrl")));
+	}
 
-    @Override
-    public void run(ISLookUpService isLookUpService)
-            throws DocumentException, IOException, ISLookUpException, SAXException {
+	@Override
+	public void run(ISLookUpService isLookUpService)
+		throws DocumentException, IOException, ISLookUpException, SAXException {
 
-        // read oozie parameters
-        final String graphBasePath = parser.get("graphBasePath");
-        final String isLookUpUrl = parser.get("isLookUpUrl");
-        final String actionSetId = parser.get("actionSetId");
-        final String workingPath = parser.get("workingPath");
-        final int numPartitions = Optional
-                .ofNullable(parser.get("numPartitions"))
-                .map(Integer::valueOf)
-                .orElse(NUM_PARTITIONS);
-        final String whiteListPath = parser.get("whiteListPath");
+		// read oozie parameters
+		final String graphBasePath = parser.get("graphBasePath");
+		final String isLookUpUrl = parser.get("isLookUpUrl");
+		final String actionSetId = parser.get("actionSetId");
+		final String workingPath = parser.get("workingPath");
+		final int numPartitions = Optional
+			.ofNullable(parser.get("numPartitions"))
+			.map(Integer::valueOf)
+			.orElse(NUM_PARTITIONS);
+		final String whiteListPath = parser.get("whiteListPath");
 
-        log.info("numPartitions: '{}'", numPartitions);
-        log.info("graphBasePath: '{}'", graphBasePath);
-        log.info("isLookUpUrl:   '{}'", isLookUpUrl);
-        log.info("actionSetId:   '{}'", actionSetId);
-        log.info("workingPath:   '{}'", workingPath);
-        log.info("whiteListPath: '{}'", whiteListPath);
+		log.info("numPartitions: '{}'", numPartitions);
+		log.info("graphBasePath: '{}'", graphBasePath);
+		log.info("isLookUpUrl:   '{}'", isLookUpUrl);
+		log.info("actionSetId:   '{}'", actionSetId);
+		log.info("workingPath:   '{}'", workingPath);
+		log.info("whiteListPath: '{}'", whiteListPath);
 
-        JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+		JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
-        //file format: source####target
-        Dataset<Tuple2<String, String>> whiteListRels = spark.createDataset(sc
-                        .textFile(whiteListPath)
-                        //check if the line is in the correct format: id1####id2
-                        .filter(s -> s.contains(WHITELIST_SEPARATOR) && s.split(WHITELIST_SEPARATOR).length == 2)
-                        .map(s -> new Tuple2<>(s.split(WHITELIST_SEPARATOR)[0], s.split(WHITELIST_SEPARATOR)[1]))
-                        .rdd(),
-                Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
+		// file format: source####target
+		Dataset<Tuple2<String, String>> whiteListRels = spark
+			.createDataset(
+				sc
+					.textFile(whiteListPath)
+					// check if the line is in the correct format: id1####id2
+					.filter(s -> s.contains(WHITELIST_SEPARATOR) && s.split(WHITELIST_SEPARATOR).length == 2)
+					.map(s -> new Tuple2<>(s.split(WHITELIST_SEPARATOR)[0], s.split(WHITELIST_SEPARATOR)[1]))
+					.rdd(),
+				Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
 
-        // for each dedup configuration
-        for (DedupConfig dedupConf : getConfigurations(isLookUpService, actionSetId)) {
+		// for each dedup configuration
+		for (DedupConfig dedupConf : getConfigurations(isLookUpService, actionSetId)) {
 
-            final String entity = dedupConf.getWf().getEntityType();
-            final String subEntity = dedupConf.getWf().getSubEntityValue();
-            log.info("Adding whitelist simrels for: '{}'", subEntity);
+			final String entity = dedupConf.getWf().getEntityType();
+			final String subEntity = dedupConf.getWf().getSubEntityValue();
+			log.info("Adding whitelist simrels for: '{}'", subEntity);
 
-            final String outputPath = DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity);
+			final String outputPath = DedupUtility.createSimRelPath(workingPath, actionSetId, subEntity);
 
-            Dataset<Tuple2<String, String>> entities = spark.createDataset(sc
-                    .textFile(DedupUtility.createEntityPath(graphBasePath, subEntity))
-                    .repartition(numPartitions)
-                    .mapToPair(
-                            (PairFunction<String, String, String>) s -> {
-                                MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, s);
-                                return new Tuple2<>(d.getIdentifier(), "present");
-                            })
-                    .rdd(),
-                    Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
+			Dataset<Tuple2<String, String>> entities = spark
+				.createDataset(
+					sc
+						.textFile(DedupUtility.createEntityPath(graphBasePath, subEntity))
+						.repartition(numPartitions)
+						.mapToPair(
+							(PairFunction<String, String, String>) s -> {
+								MapDocument d = MapDocumentUtil.asMapDocumentWithJPath(dedupConf, s);
+								return new Tuple2<>(d.getIdentifier(), "present");
+							})
+						.rdd(),
+					Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
 
-            Dataset<Tuple2<String, String>> whiteListRels1 = whiteListRels
-                    .joinWith(entities, whiteListRels.col("_1").equalTo(entities.col("_1")), "inner")
-                    .map((MapFunction<Tuple2<Tuple2<String, String>, Tuple2<String, String>>, Tuple2<String, String>>) Tuple2::_1, Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
+			Dataset<Tuple2<String, String>> whiteListRels1 = whiteListRels
+				.joinWith(entities, whiteListRels.col("_1").equalTo(entities.col("_1")), "inner")
+				.map(
+					(MapFunction<Tuple2<Tuple2<String, String>, Tuple2<String, String>>, Tuple2<String, String>>) Tuple2::_1,
+					Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
 
-            Dataset<Tuple2<String, String>> whiteListRels2 = whiteListRels1
-                    .joinWith(entities, whiteListRels1.col("_2").equalTo(entities.col("_1")), "inner")
-                    .map((MapFunction<Tuple2<Tuple2<String, String>, Tuple2<String, String>>, Tuple2<String, String>>) Tuple2::_1, Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
+			Dataset<Tuple2<String, String>> whiteListRels2 = whiteListRels1
+				.joinWith(entities, whiteListRels1.col("_2").equalTo(entities.col("_1")), "inner")
+				.map(
+					(MapFunction<Tuple2<Tuple2<String, String>, Tuple2<String, String>>, Tuple2<String, String>>) Tuple2::_1,
+					Encoders.tuple(Encoders.STRING(), Encoders.STRING()));
 
-            Dataset<Relation> whiteListSimRels = whiteListRels2
-                    .map((MapFunction<Tuple2<String, String>, Relation>)
-                                    r -> createSimRel(r._1(), r._2(), entity),
-                                    Encoders.bean(Relation.class)
-                    );
+			Dataset<Relation> whiteListSimRels = whiteListRels2
+				.map(
+					(MapFunction<Tuple2<String, String>, Relation>) r -> createSimRel(r._1(), r._2(), entity),
+					Encoders.bean(Relation.class));
 
-            saveParquet(whiteListSimRels, outputPath, SaveMode.Append);
-        }
-    }
+			saveParquet(whiteListSimRels, outputPath, SaveMode.Append);
+		}
+	}
 
-    private Relation createSimRel(String source, String target, String entity) {
-        final Relation r = new Relation();
-        r.setSource(source);
-        r.setTarget(target);
-        r.setSubRelType("dedupSimilarity");
-        r.setRelClass("isSimilarTo");
-        r.setDataInfo(new DataInfo());
+	private Relation createSimRel(String source, String target, String entity) {
+		final Relation r = new Relation();
+		r.setSource(source);
+		r.setTarget(target);
+		r.setSubRelType("dedupSimilarity");
+		r.setRelClass("isSimilarTo");
+		r.setDataInfo(new DataInfo());
 
-        switch (entity) {
-            case "result":
-                r.setRelType("resultResult");
-                break;
-            case "organization":
-                r.setRelType("organizationOrganization");
-                break;
-            default:
-                throw new IllegalArgumentException("unmanaged entity type: " + entity);
-        }
-        return r;
-    }
+		switch (entity) {
+			case "result":
+				r.setRelType("resultResult");
+				break;
+			case "organization":
+				r.setRelType("organizationOrganization");
+				break;
+			default:
+				throw new IllegalArgumentException("unmanaged entity type: " + entity);
+		}
+		return r;
+	}
 }
diff --git a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java
index fa03f93a6b..549988767f 100644
--- a/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java
+++ b/dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/SparkDedupTest.java
@@ -48,634 +48,640 @@ import scala.Tuple2;
 @TestMethodOrder(MethodOrderer.OrderAnnotation.class)
 public class SparkDedupTest implements Serializable {
 
-    @Mock(serializable = true)
-    ISLookUpService isLookUpService;
-
-    private static SparkSession spark;
-    private static JavaSparkContext jsc;
-
-    private static String testGraphBasePath;
-    private static String testOutputBasePath;
-    private static String testDedupGraphBasePath;
-    private static final String testActionSetId = "test-orchestrator";
-    private static String whitelistPath;
-    private static List<String> whiteList;
-
-    private static String WHITELIST_SEPARATOR = "####";
-
-    @BeforeAll
-    public static void cleanUp() throws IOException, URISyntaxException {
-
-        testGraphBasePath = Paths
-                .get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/entities").toURI())
-                .toFile()
-                .getAbsolutePath();
-        testOutputBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
-                .toAbsolutePath()
-                .toString();
-
-        testDedupGraphBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
-                .toAbsolutePath()
-                .toString();
-
-        whitelistPath = Paths
-                .get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/whitelist.simrels.txt").toURI())
-                .toFile()
-                .getAbsolutePath();
-        whiteList = IOUtils.readLines(new FileReader(whitelistPath));
-
-        FileUtils.deleteDirectory(new File(testOutputBasePath));
-        FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
-
-        final SparkConf conf = new SparkConf();
-        conf.set("spark.sql.shuffle.partitions", "200");
-        spark = SparkSession
-                .builder()
-                .appName(SparkDedupTest.class.getSimpleName())
-                .master("local[*]")
-                .config(conf)
-                .getOrCreate();
-
-        jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-    }
-
-    @BeforeEach
-    public void setUp() throws IOException, ISLookUpException {
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId)))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator.xml")));
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains("organization")))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication")))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json")));
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains("software")))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json")));
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains("dataset")))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json")));
-
-        lenient()
-                .when(isLookUpService.getResourceProfileByQuery(Mockito.contains("otherresearchproduct")))
-                .thenReturn(
-                        IOUtils
-                                .toString(
-                                        SparkDedupTest.class
-                                                .getResourceAsStream(
-                                                        "/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json")));
-    }
-
-    @Test
-    @Order(1)
-    void createSimRelsTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkCreateSimRels.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json")));
-
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i", testGraphBasePath,
-                                "-asi", testActionSetId,
-                                "-la", "lookupurl",
-                                "-w", testOutputBasePath,
-                                "-np", "50"
-                        });
-
-        new SparkCreateSimRels(parser, spark).run(isLookUpService);
-
-        long orgs_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "organization"))
-                .count();
-
-        long pubs_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "publication"))
-                .count();
-
-        long sw_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "software"))
-                .count();
-
-        long ds_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "dataset"))
-                .count();
-
-        long orp_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "otherresearchproduct"))
-                .count();
-
-        assertEquals(3082, orgs_simrel);
-        assertEquals(7036, pubs_simrel);
-        assertEquals(336, sw_simrel);
-        assertEquals(442, ds_simrel);
-        assertEquals(6750, orp_simrel);
-    }
-
-    @Test
-    @Order(2)
-    void whitelistSimRelsTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkWhitelistSimRels.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/whitelistSimRels_parameters.json")));
-
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i", testGraphBasePath,
-                                "-asi", testActionSetId,
-                                "-la", "lookupurl",
-                                "-w", testOutputBasePath,
-                                "-np", "50",
-                                "-wl", whitelistPath
-                        });
-
-        new SparkWhitelistSimRels(parser, spark).run(isLookUpService);
-
-        long orgs_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "organization"))
-                .count();
-
-        long pubs_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "publication"))
-                .count();
-
-        long ds_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "dataset"))
-                .count();
-
-        long orp_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "otherresearchproduct"))
-                .count();
-
-        //entities simrels supposed to be equal to the number of previous step (no rels in whitelist)
-        assertEquals(3082, orgs_simrel);
-        assertEquals(7036, pubs_simrel);
-        assertEquals(442, ds_simrel);
-        assertEquals(6750, orp_simrel);
-
-        //entities simrels to be different from the number of previous step (new simrels in the whitelist)
-        Dataset<Row> sw_simrel = spark
-                .read()
-                .load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "software"));
-
-        //check if the first relation in the whitelist exists
-        assertTrue(sw_simrel
-                .as(Encoders.bean(Relation.class))
-                .toJavaRDD()
-                .filter(rel ->
-                        rel.getSource().equalsIgnoreCase(whiteList.get(0).split(WHITELIST_SEPARATOR)[0]) && rel.getTarget().equalsIgnoreCase(whiteList.get(0).split(WHITELIST_SEPARATOR)[1])).count() > 0);
-        //check if the second relation in the whitelist exists
-        assertTrue(sw_simrel
-                .as(Encoders.bean(Relation.class))
-                .toJavaRDD()
-                .filter(rel ->
-                        rel.getSource().equalsIgnoreCase(whiteList.get(1).split(WHITELIST_SEPARATOR)[0]) && rel.getTarget().equalsIgnoreCase(whiteList.get(1).split(WHITELIST_SEPARATOR)[1])).count() > 0);
-
-        assertEquals(338, sw_simrel.count());
-
-    }
-
-    @Test
-    @Order(3)
-    void cutMergeRelsTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkCreateMergeRels.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json")));
-
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i",
-                                testGraphBasePath,
-                                "-asi",
-                                testActionSetId,
-                                "-la",
-                                "lookupurl",
-                                "-w",
-                                testOutputBasePath,
-                                "-cc",
-                                "3"
-                        });
-
-        new SparkCreateMergeRels(parser, spark).run(isLookUpService);
-
-        long orgs_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
-                .groupBy("source")
-                .agg(count("target").alias("cnt"))
-                .select("source", "cnt")
-                .where("cnt > 3")
-                .count();
-
-        long pubs_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
-                .groupBy("source")
-                .agg(count("target").alias("cnt"))
-                .select("source", "cnt")
-                .where("cnt > 3")
-                .count();
-        long sw_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
-                .groupBy("source")
-                .agg(count("target").alias("cnt"))
-                .select("source", "cnt")
-                .where("cnt > 3")
-                .count();
-
-        long ds_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
-                .groupBy("source")
-                .agg(count("target").alias("cnt"))
-                .select("source", "cnt")
-                .where("cnt > 3")
-                .count();
-
-        long orp_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
-                .groupBy("source")
-                .agg(count("target").alias("cnt"))
-                .select("source", "cnt")
-                .where("cnt > 3")
-                .count();
-
-        assertEquals(0, orgs_mergerel);
-        assertEquals(0, pubs_mergerel);
-        assertEquals(0, sw_mergerel);
-        assertEquals(0, ds_mergerel);
-        assertEquals(0, orp_mergerel);
-
-        FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel"));
-        FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel"));
-        FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/software_mergerel"));
-        FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel"));
-        FileUtils
-                .deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel"));
-    }
-
-    @Test
-    @Order(4)
-    void createMergeRelsTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkCreateMergeRels.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json")));
-
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i",
-                                testGraphBasePath,
-                                "-asi",
-                                testActionSetId,
-                                "-la",
-                                "lookupurl",
-                                "-w",
-                                testOutputBasePath
-                        });
-
-        new SparkCreateMergeRels(parser, spark).run(isLookUpService);
-
-        long orgs_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
-                .count();
-        long pubs_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
-                .count();
-        long sw_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
-                .count();
-        long ds_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
-                .count();
-
-        long orp_mergerel = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
-                .count();
-
-        assertEquals(1272, orgs_mergerel);
-        assertEquals(1438, pubs_mergerel);
-        assertEquals(286, sw_mergerel);
-        assertEquals(472, ds_mergerel);
-        assertEquals(718, orp_mergerel);
-
-    }
-
-    @Test
-    @Order(5)
-    void createDedupRecordTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkCreateDedupRecord.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json")));
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i",
-                                testGraphBasePath,
-                                "-asi",
-                                testActionSetId,
-                                "-la",
-                                "lookupurl",
-                                "-w",
-                                testOutputBasePath
-                        });
-
-        new SparkCreateDedupRecord(parser, spark).run(isLookUpService);
-
-        long orgs_deduprecord = jsc
-                .textFile(testOutputBasePath + "/" + testActionSetId + "/organization_deduprecord")
-                .count();
-        long pubs_deduprecord = jsc
-                .textFile(testOutputBasePath + "/" + testActionSetId + "/publication_deduprecord")
-                .count();
-        long sw_deduprecord = jsc
-                .textFile(testOutputBasePath + "/" + testActionSetId + "/software_deduprecord")
-                .count();
-        long ds_deduprecord = jsc.textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_deduprecord").count();
-        long orp_deduprecord = jsc
-                .textFile(
-                        testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_deduprecord")
-                .count();
-
-        assertEquals(85, orgs_deduprecord);
-        assertEquals(65, pubs_deduprecord);
-        assertEquals(49, sw_deduprecord);
-        assertEquals(97, ds_deduprecord);
-        assertEquals(89, orp_deduprecord);
-    }
-
-    @Test
-    @Order(6)
-    void updateEntityTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkUpdateEntity.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json")));
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath
-                        });
-
-        new SparkUpdateEntity(parser, spark).run(isLookUpService);
-
-        long organizations = jsc.textFile(testDedupGraphBasePath + "/organization").count();
-        long publications = jsc.textFile(testDedupGraphBasePath + "/publication").count();
-        long projects = jsc.textFile(testDedupGraphBasePath + "/project").count();
-        long datasource = jsc.textFile(testDedupGraphBasePath + "/datasource").count();
-        long softwares = jsc.textFile(testDedupGraphBasePath + "/software").count();
-        long dataset = jsc.textFile(testDedupGraphBasePath + "/dataset").count();
-        long otherresearchproduct = jsc.textFile(testDedupGraphBasePath + "/otherresearchproduct").count();
-
-        long mergedOrgs = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .where("relClass=='merges'")
-                .javaRDD()
-                .map(Relation::getTarget)
-                .distinct()
-                .count();
-
-        long mergedPubs = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .where("relClass=='merges'")
-                .javaRDD()
-                .map(Relation::getTarget)
-                .distinct()
-                .count();
-
-        long mergedSw = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .where("relClass=='merges'")
-                .javaRDD()
-                .map(Relation::getTarget)
-                .distinct()
-                .count();
-
-        long mergedDs = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .where("relClass=='merges'")
-                .javaRDD()
-                .map(Relation::getTarget)
-                .distinct()
-                .count();
-
-        long mergedOrp = spark
-                .read()
-                .load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
-                .as(Encoders.bean(Relation.class))
-                .where("relClass=='merges'")
-                .javaRDD()
-                .map(Relation::getTarget)
-                .distinct()
-                .count();
-
-        assertEquals(896, publications);
-        assertEquals(838, organizations);
-        assertEquals(100, projects);
-        assertEquals(100, datasource);
-        assertEquals(198, softwares);
-        assertEquals(389, dataset);
-        assertEquals(517, otherresearchproduct);
-
-        long deletedOrgs = jsc
-                .textFile(testDedupGraphBasePath + "/organization")
-                .filter(this::isDeletedByInference)
-                .count();
-
-        long deletedPubs = jsc
-                .textFile(testDedupGraphBasePath + "/publication")
-                .filter(this::isDeletedByInference)
-                .count();
-
-        long deletedSw = jsc
-                .textFile(testDedupGraphBasePath + "/software")
-                .filter(this::isDeletedByInference)
-                .count();
-
-        long deletedDs = jsc
-                .textFile(testDedupGraphBasePath + "/dataset")
-                .filter(this::isDeletedByInference)
-                .count();
-
-        long deletedOrp = jsc
-                .textFile(testDedupGraphBasePath + "/otherresearchproduct")
-                .filter(this::isDeletedByInference)
-                .count();
-
-        assertEquals(mergedOrgs, deletedOrgs);
-        assertEquals(mergedPubs, deletedPubs);
-        assertEquals(mergedSw, deletedSw);
-        assertEquals(mergedDs, deletedDs);
-        assertEquals(mergedOrp, deletedOrp);
-    }
-
-    @Test
-    @Order(7)
-    void propagateRelationTest() throws Exception {
-
-        ArgumentApplicationParser parser = new ArgumentApplicationParser(
-                IOUtils
-                        .toString(
-                                SparkPropagateRelation.class
-                                        .getResourceAsStream(
-                                                "/eu/dnetlib/dhp/oa/dedup/propagateRelation_parameters.json")));
-        parser
-                .parseArgument(
-                        new String[]{
-                                "-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath
-                        });
-
-        new SparkPropagateRelation(parser, spark).run(isLookUpService);
-
-        long relations = jsc.textFile(testDedupGraphBasePath + "/relation").count();
-
-        assertEquals(4860, relations);
-
-        // check deletedbyinference
-        final Dataset<Relation> mergeRels = spark
-                .read()
-                .load(DedupUtility.createMergeRelPath(testOutputBasePath, "*", "*"))
-                .as(Encoders.bean(Relation.class));
-        final JavaPairRDD<String, String> mergedIds = mergeRels
-                .where("relClass == 'merges'")
-                .select(mergeRels.col("target"))
-                .distinct()
-                .toJavaRDD()
-                .mapToPair(
-                        (PairFunction<Row, String, String>) r -> new Tuple2<String, String>(r.getString(0), "d"));
-
-        JavaRDD<String> toCheck = jsc
-                .textFile(testDedupGraphBasePath + "/relation")
-                .mapToPair(json -> new Tuple2<>(MapDocumentUtil.getJPathString("$.source", json), json))
-                .join(mergedIds)
-                .map(t -> t._2()._1())
-                .mapToPair(json -> new Tuple2<>(MapDocumentUtil.getJPathString("$.target", json), json))
-                .join(mergedIds)
-                .map(t -> t._2()._1());
-
-        long deletedbyinference = toCheck.filter(this::isDeletedByInference).count();
-        long updated = toCheck.count();
-
-        assertEquals(updated, deletedbyinference);
-    }
-
-    @Test
-    @Order(8)
-    void testRelations() throws Exception {
-        testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_1.json", 12, 10);
-        testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_2.json", 10, 2);
-    }
-
-    private void testUniqueness(String path, int expected_total, int expected_unique) {
-        Dataset<Relation> rel = spark
-                .read()
-                .textFile(getClass().getResource(path).getPath())
-                .map(
-                        (MapFunction<String, Relation>) s -> new ObjectMapper().readValue(s, Relation.class),
-                        Encoders.bean(Relation.class));
-
-        assertEquals(expected_total, rel.count());
-        assertEquals(expected_unique, rel.distinct().count());
-    }
-
-    @AfterAll
-    public static void finalCleanUp() throws IOException {
-        FileUtils.deleteDirectory(new File(testOutputBasePath));
-        FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
-    }
-
-    public boolean isDeletedByInference(String s) {
-        return s.contains("\"deletedbyinference\":true");
-    }
+	@Mock(serializable = true)
+	ISLookUpService isLookUpService;
+
+	private static SparkSession spark;
+	private static JavaSparkContext jsc;
+
+	private static String testGraphBasePath;
+	private static String testOutputBasePath;
+	private static String testDedupGraphBasePath;
+	private static final String testActionSetId = "test-orchestrator";
+	private static String whitelistPath;
+	private static List<String> whiteList;
+
+	private static String WHITELIST_SEPARATOR = "####";
+
+	@BeforeAll
+	public static void cleanUp() throws IOException, URISyntaxException {
+
+		testGraphBasePath = Paths
+			.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/entities").toURI())
+			.toFile()
+			.getAbsolutePath();
+		testOutputBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
+			.toAbsolutePath()
+			.toString();
+
+		testDedupGraphBasePath = createTempDirectory(SparkDedupTest.class.getSimpleName() + "-")
+			.toAbsolutePath()
+			.toString();
+
+		whitelistPath = Paths
+			.get(SparkDedupTest.class.getResource("/eu/dnetlib/dhp/dedup/whitelist.simrels.txt").toURI())
+			.toFile()
+			.getAbsolutePath();
+		whiteList = IOUtils.readLines(new FileReader(whitelistPath));
+
+		FileUtils.deleteDirectory(new File(testOutputBasePath));
+		FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
+
+		final SparkConf conf = new SparkConf();
+		conf.set("spark.sql.shuffle.partitions", "200");
+		spark = SparkSession
+			.builder()
+			.appName(SparkDedupTest.class.getSimpleName())
+			.master("local[*]")
+			.config(conf)
+			.getOrCreate();
+
+		jsc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+	}
+
+	@BeforeEach
+	public void setUp() throws IOException, ISLookUpException {
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains(testActionSetId)))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/profiles/mock_orchestrator.xml")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("organization")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/org.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("publication")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/pub.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("software")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/sw.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("dataset")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/ds.curr.conf.json")));
+
+		lenient()
+			.when(isLookUpService.getResourceProfileByQuery(Mockito.contains("otherresearchproduct")))
+			.thenReturn(
+				IOUtils
+					.toString(
+						SparkDedupTest.class
+							.getResourceAsStream(
+								"/eu/dnetlib/dhp/dedup/conf/orp.curr.conf.json")));
+	}
+
+	@Test
+	@Order(1)
+	void createSimRelsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateSimRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createSimRels_parameters.json")));
+
+		parser
+			.parseArgument(
+				new String[] {
+					"-i", testGraphBasePath,
+					"-asi", testActionSetId,
+					"-la", "lookupurl",
+					"-w", testOutputBasePath,
+					"-np", "50"
+				});
+
+		new SparkCreateSimRels(parser, spark).run(isLookUpService);
+
+		long orgs_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "organization"))
+			.count();
+
+		long pubs_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "publication"))
+			.count();
+
+		long sw_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "software"))
+			.count();
+
+		long ds_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "dataset"))
+			.count();
+
+		long orp_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "otherresearchproduct"))
+			.count();
+
+		assertEquals(3082, orgs_simrel);
+		assertEquals(7036, pubs_simrel);
+		assertEquals(336, sw_simrel);
+		assertEquals(442, ds_simrel);
+		assertEquals(6750, orp_simrel);
+	}
+
+	@Test
+	@Order(2)
+	void whitelistSimRelsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkWhitelistSimRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/whitelistSimRels_parameters.json")));
+
+		parser
+			.parseArgument(
+				new String[] {
+					"-i", testGraphBasePath,
+					"-asi", testActionSetId,
+					"-la", "lookupurl",
+					"-w", testOutputBasePath,
+					"-np", "50",
+					"-wl", whitelistPath
+				});
+
+		new SparkWhitelistSimRels(parser, spark).run(isLookUpService);
+
+		long orgs_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "organization"))
+			.count();
+
+		long pubs_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "publication"))
+			.count();
+
+		long ds_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "dataset"))
+			.count();
+
+		long orp_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "otherresearchproduct"))
+			.count();
+
+		// entities simrels supposed to be equal to the number of previous step (no rels in whitelist)
+		assertEquals(3082, orgs_simrel);
+		assertEquals(7036, pubs_simrel);
+		assertEquals(442, ds_simrel);
+		assertEquals(6750, orp_simrel);
+
+		// entities simrels to be different from the number of previous step (new simrels in the whitelist)
+		Dataset<Row> sw_simrel = spark
+			.read()
+			.load(DedupUtility.createSimRelPath(testOutputBasePath, testActionSetId, "software"));
+
+		// check if the first relation in the whitelist exists
+		assertTrue(
+			sw_simrel
+				.as(Encoders.bean(Relation.class))
+				.toJavaRDD()
+				.filter(
+					rel -> rel.getSource().equalsIgnoreCase(whiteList.get(0).split(WHITELIST_SEPARATOR)[0])
+						&& rel.getTarget().equalsIgnoreCase(whiteList.get(0).split(WHITELIST_SEPARATOR)[1]))
+				.count() > 0);
+		// check if the second relation in the whitelist exists
+		assertTrue(
+			sw_simrel
+				.as(Encoders.bean(Relation.class))
+				.toJavaRDD()
+				.filter(
+					rel -> rel.getSource().equalsIgnoreCase(whiteList.get(1).split(WHITELIST_SEPARATOR)[0])
+						&& rel.getTarget().equalsIgnoreCase(whiteList.get(1).split(WHITELIST_SEPARATOR)[1]))
+				.count() > 0);
+
+		assertEquals(338, sw_simrel.count());
+
+	}
+
+	@Test
+	@Order(3)
+	void cutMergeRelsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateMergeRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json")));
+
+		parser
+			.parseArgument(
+				new String[] {
+					"-i",
+					testGraphBasePath,
+					"-asi",
+					testActionSetId,
+					"-la",
+					"lookupurl",
+					"-w",
+					testOutputBasePath,
+					"-cc",
+					"3"
+				});
+
+		new SparkCreateMergeRels(parser, spark).run(isLookUpService);
+
+		long orgs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long pubs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+		long sw_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long ds_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		long orp_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.filter((FilterFunction<Relation>) r -> r.getRelClass().equalsIgnoreCase("merges"))
+			.groupBy("source")
+			.agg(count("target").alias("cnt"))
+			.select("source", "cnt")
+			.where("cnt > 3")
+			.count();
+
+		assertEquals(0, orgs_mergerel);
+		assertEquals(0, pubs_mergerel);
+		assertEquals(0, sw_mergerel);
+		assertEquals(0, ds_mergerel);
+		assertEquals(0, orp_mergerel);
+
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/software_mergerel"));
+		FileUtils.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel"));
+		FileUtils
+			.deleteDirectory(new File(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel"));
+	}
+
+	@Test
+	@Order(4)
+	void createMergeRelsTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateMergeRels.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createCC_parameters.json")));
+
+		parser
+			.parseArgument(
+				new String[] {
+					"-i",
+					testGraphBasePath,
+					"-asi",
+					testActionSetId,
+					"-la",
+					"lookupurl",
+					"-w",
+					testOutputBasePath
+				});
+
+		new SparkCreateMergeRels(parser, spark).run(isLookUpService);
+
+		long orgs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
+			.count();
+		long pubs_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
+			.count();
+		long sw_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
+			.count();
+		long ds_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
+			.count();
+
+		long orp_mergerel = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
+			.count();
+
+		assertEquals(1272, orgs_mergerel);
+		assertEquals(1438, pubs_mergerel);
+		assertEquals(286, sw_mergerel);
+		assertEquals(472, ds_mergerel);
+		assertEquals(718, orp_mergerel);
+
+	}
+
+	@Test
+	@Order(5)
+	void createDedupRecordTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkCreateDedupRecord.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/createDedupRecord_parameters.json")));
+		parser
+			.parseArgument(
+				new String[] {
+					"-i",
+					testGraphBasePath,
+					"-asi",
+					testActionSetId,
+					"-la",
+					"lookupurl",
+					"-w",
+					testOutputBasePath
+				});
+
+		new SparkCreateDedupRecord(parser, spark).run(isLookUpService);
+
+		long orgs_deduprecord = jsc
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/organization_deduprecord")
+			.count();
+		long pubs_deduprecord = jsc
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/publication_deduprecord")
+			.count();
+		long sw_deduprecord = jsc
+			.textFile(testOutputBasePath + "/" + testActionSetId + "/software_deduprecord")
+			.count();
+		long ds_deduprecord = jsc.textFile(testOutputBasePath + "/" + testActionSetId + "/dataset_deduprecord").count();
+		long orp_deduprecord = jsc
+			.textFile(
+				testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_deduprecord")
+			.count();
+
+		assertEquals(85, orgs_deduprecord);
+		assertEquals(65, pubs_deduprecord);
+		assertEquals(49, sw_deduprecord);
+		assertEquals(97, ds_deduprecord);
+		assertEquals(89, orp_deduprecord);
+	}
+
+	@Test
+	@Order(6)
+	void updateEntityTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkUpdateEntity.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/updateEntity_parameters.json")));
+		parser
+			.parseArgument(
+				new String[] {
+					"-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath
+				});
+
+		new SparkUpdateEntity(parser, spark).run(isLookUpService);
+
+		long organizations = jsc.textFile(testDedupGraphBasePath + "/organization").count();
+		long publications = jsc.textFile(testDedupGraphBasePath + "/publication").count();
+		long projects = jsc.textFile(testDedupGraphBasePath + "/project").count();
+		long datasource = jsc.textFile(testDedupGraphBasePath + "/datasource").count();
+		long softwares = jsc.textFile(testDedupGraphBasePath + "/software").count();
+		long dataset = jsc.textFile(testDedupGraphBasePath + "/dataset").count();
+		long otherresearchproduct = jsc.textFile(testDedupGraphBasePath + "/otherresearchproduct").count();
+
+		long mergedOrgs = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/organization_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.where("relClass=='merges'")
+			.javaRDD()
+			.map(Relation::getTarget)
+			.distinct()
+			.count();
+
+		long mergedPubs = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/publication_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.where("relClass=='merges'")
+			.javaRDD()
+			.map(Relation::getTarget)
+			.distinct()
+			.count();
+
+		long mergedSw = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/software_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.where("relClass=='merges'")
+			.javaRDD()
+			.map(Relation::getTarget)
+			.distinct()
+			.count();
+
+		long mergedDs = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/dataset_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.where("relClass=='merges'")
+			.javaRDD()
+			.map(Relation::getTarget)
+			.distinct()
+			.count();
+
+		long mergedOrp = spark
+			.read()
+			.load(testOutputBasePath + "/" + testActionSetId + "/otherresearchproduct_mergerel")
+			.as(Encoders.bean(Relation.class))
+			.where("relClass=='merges'")
+			.javaRDD()
+			.map(Relation::getTarget)
+			.distinct()
+			.count();
+
+		assertEquals(896, publications);
+		assertEquals(838, organizations);
+		assertEquals(100, projects);
+		assertEquals(100, datasource);
+		assertEquals(198, softwares);
+		assertEquals(389, dataset);
+		assertEquals(517, otherresearchproduct);
+
+		long deletedOrgs = jsc
+			.textFile(testDedupGraphBasePath + "/organization")
+			.filter(this::isDeletedByInference)
+			.count();
+
+		long deletedPubs = jsc
+			.textFile(testDedupGraphBasePath + "/publication")
+			.filter(this::isDeletedByInference)
+			.count();
+
+		long deletedSw = jsc
+			.textFile(testDedupGraphBasePath + "/software")
+			.filter(this::isDeletedByInference)
+			.count();
+
+		long deletedDs = jsc
+			.textFile(testDedupGraphBasePath + "/dataset")
+			.filter(this::isDeletedByInference)
+			.count();
+
+		long deletedOrp = jsc
+			.textFile(testDedupGraphBasePath + "/otherresearchproduct")
+			.filter(this::isDeletedByInference)
+			.count();
+
+		assertEquals(mergedOrgs, deletedOrgs);
+		assertEquals(mergedPubs, deletedPubs);
+		assertEquals(mergedSw, deletedSw);
+		assertEquals(mergedDs, deletedDs);
+		assertEquals(mergedOrp, deletedOrp);
+	}
+
+	@Test
+	@Order(7)
+	void propagateRelationTest() throws Exception {
+
+		ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					SparkPropagateRelation.class
+						.getResourceAsStream(
+							"/eu/dnetlib/dhp/oa/dedup/propagateRelation_parameters.json")));
+		parser
+			.parseArgument(
+				new String[] {
+					"-i", testGraphBasePath, "-w", testOutputBasePath, "-o", testDedupGraphBasePath
+				});
+
+		new SparkPropagateRelation(parser, spark).run(isLookUpService);
+
+		long relations = jsc.textFile(testDedupGraphBasePath + "/relation").count();
+
+		assertEquals(4860, relations);
+
+		// check deletedbyinference
+		final Dataset<Relation> mergeRels = spark
+			.read()
+			.load(DedupUtility.createMergeRelPath(testOutputBasePath, "*", "*"))
+			.as(Encoders.bean(Relation.class));
+		final JavaPairRDD<String, String> mergedIds = mergeRels
+			.where("relClass == 'merges'")
+			.select(mergeRels.col("target"))
+			.distinct()
+			.toJavaRDD()
+			.mapToPair(
+				(PairFunction<Row, String, String>) r -> new Tuple2<String, String>(r.getString(0), "d"));
+
+		JavaRDD<String> toCheck = jsc
+			.textFile(testDedupGraphBasePath + "/relation")
+			.mapToPair(json -> new Tuple2<>(MapDocumentUtil.getJPathString("$.source", json), json))
+			.join(mergedIds)
+			.map(t -> t._2()._1())
+			.mapToPair(json -> new Tuple2<>(MapDocumentUtil.getJPathString("$.target", json), json))
+			.join(mergedIds)
+			.map(t -> t._2()._1());
+
+		long deletedbyinference = toCheck.filter(this::isDeletedByInference).count();
+		long updated = toCheck.count();
+
+		assertEquals(updated, deletedbyinference);
+	}
+
+	@Test
+	@Order(8)
+	void testRelations() throws Exception {
+		testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_1.json", 12, 10);
+		testUniqueness("/eu/dnetlib/dhp/dedup/test/relation_2.json", 10, 2);
+	}
+
+	private void testUniqueness(String path, int expected_total, int expected_unique) {
+		Dataset<Relation> rel = spark
+			.read()
+			.textFile(getClass().getResource(path).getPath())
+			.map(
+				(MapFunction<String, Relation>) s -> new ObjectMapper().readValue(s, Relation.class),
+				Encoders.bean(Relation.class));
+
+		assertEquals(expected_total, rel.count());
+		assertEquals(expected_unique, rel.distinct().count());
+	}
+
+	@AfterAll
+	public static void finalCleanUp() throws IOException {
+		FileUtils.deleteDirectory(new File(testOutputBasePath));
+		FileUtils.deleteDirectory(new File(testDedupGraphBasePath));
+	}
+
+	public boolean isDeletedByInference(String s) {
+		return s.contains("\"deletedbyinference\":true");
+	}
 }
diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java
index 0d7c74475e..23e97a97a8 100644
--- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java
+++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java
@@ -69,7 +69,7 @@ public class PropagationConstant {
 					PROPAGATION_DATA_INFO_TYPE,
 					PROPAGATION_COUNTRY_INSTREPO_CLASS_ID,
 					PROPAGATION_COUNTRY_INSTREPO_CLASS_NAME,
-						ModelConstants.DNET_PROVENANCE_ACTIONS));
+					ModelConstants.DNET_PROVENANCE_ACTIONS));
 		return nc;
 	}
 
@@ -84,7 +84,8 @@ public class PropagationConstant {
 		return di;
 	}
 
-	public static Qualifier getQualifier(String inference_class_id, String inference_class_name, String qualifierSchema) {
+	public static Qualifier getQualifier(String inference_class_id, String inference_class_name,
+		String qualifierSchema) {
 		Qualifier pa = new Qualifier();
 		pa.setClassid(inference_class_id);
 		pa.setClassname(inference_class_name);
@@ -108,7 +109,11 @@ public class PropagationConstant {
 		r.setRelClass(rel_class);
 		r.setRelType(rel_type);
 		r.setSubRelType(subrel_type);
-		r.setDataInfo(getDataInfo(inference_provenance, inference_class_id, inference_class_name, ModelConstants.DNET_PROVENANCE_ACTIONS));
+		r
+			.setDataInfo(
+				getDataInfo(
+					inference_provenance, inference_class_id, inference_class_name,
+					ModelConstants.DNET_PROVENANCE_ACTIONS));
 		return r;
 	}
 
diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/orcidtoresultfromsemrel/SparkOrcidToResultFromSemRelJob.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/orcidtoresultfromsemrel/SparkOrcidToResultFromSemRelJob.java
index 68949b9004..a38b4da2e8 100644
--- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/orcidtoresultfromsemrel/SparkOrcidToResultFromSemRelJob.java
+++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/orcidtoresultfromsemrel/SparkOrcidToResultFromSemRelJob.java
@@ -173,14 +173,17 @@ public class SparkOrcidToResultFromSemRelJob {
 		if (toaddpid) {
 			StructuredProperty p = new StructuredProperty();
 			p.setValue(autoritative_author.getOrcid());
-			p.setQualifier(getQualifier(ModelConstants.ORCID_PENDING, ModelConstants.ORCID_CLASSNAME, ModelConstants.DNET_PID_TYPES));
+			p
+				.setQualifier(
+					getQualifier(
+						ModelConstants.ORCID_PENDING, ModelConstants.ORCID_CLASSNAME, ModelConstants.DNET_PID_TYPES));
 			p
 				.setDataInfo(
 					getDataInfo(
 						PROPAGATION_DATA_INFO_TYPE,
 						PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID,
 						PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME,
-							ModelConstants.DNET_PROVENANCE_ACTIONS));
+						ModelConstants.DNET_PROVENANCE_ACTIONS));
 
 			Optional<List<StructuredProperty>> authorPid = Optional.ofNullable(author.getPid());
 			if (authorPid.isPresent()) {
diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java
index 1289ff644f..50df08f8c8 100644
--- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java
+++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java
@@ -10,7 +10,6 @@ import java.util.List;
 import java.util.Optional;
 import java.util.stream.Collectors;
 
-import eu.dnetlib.dhp.schema.common.ModelConstants;
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
@@ -22,6 +21,7 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.oaf.Context;
 import eu.dnetlib.dhp.schema.oaf.Result;
 import scala.Tuple2;
@@ -130,7 +130,7 @@ public class SparkResultToCommunityFromOrganizationJob {
 											PROPAGATION_DATA_INFO_TYPE,
 											PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_ID,
 											PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME,
-												ModelConstants.DNET_PROVENANCE_ACTIONS)));
+											ModelConstants.DNET_PROVENANCE_ACTIONS)));
 						propagatedContexts.add(newContext);
 					}
 				}
diff --git a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromsemrel/SparkResultToCommunityThroughSemRelJob.java b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromsemrel/SparkResultToCommunityThroughSemRelJob.java
index 7f76ead94b..f31a262307 100644
--- a/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromsemrel/SparkResultToCommunityThroughSemRelJob.java
+++ b/dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromsemrel/SparkResultToCommunityThroughSemRelJob.java
@@ -7,7 +7,6 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
 import java.util.*;
 import java.util.stream.Collectors;
 
-import eu.dnetlib.dhp.schema.common.ModelConstants;
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
@@ -20,6 +19,7 @@ import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.resulttocommunityfromorganization.ResultCommunityList;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.oaf.*;
 import scala.Tuple2;
 
@@ -126,7 +126,7 @@ public class SparkResultToCommunityThroughSemRelJob {
 													PROPAGATION_DATA_INFO_TYPE,
 													PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_ID,
 													PROPAGATION_RESULT_COMMUNITY_SEMREL_CLASS_NAME,
-														ModelConstants.DNET_PROVENANCE_ACTIONS)));
+													ModelConstants.DNET_PROVENANCE_ACTIONS)));
 								return newContext;
 							}
 							return null;
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index f4bf8d52a4..988a8c7a41 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -6,6 +6,8 @@ import java.util.*;
 import java.util.stream.Collectors;
 
 import org.apache.commons.lang3.StringUtils;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Encoders;
 
 import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.dump.oaf.*;
@@ -23,8 +25,6 @@ import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Context;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
 import eu.dnetlib.dhp.schema.oaf.*;
-import org.apache.spark.api.java.function.MapFunction;
-import org.apache.spark.sql.Encoders;
 
 public class ResultMapper implements Serializable {
 
@@ -278,16 +278,17 @@ public class ResultMapper implements Serializable {
 
 			}
 
-
 			Optional
 				.ofNullable(input.getPid())
 				.ifPresent(
-					value -> out.setPid(value
-						.stream()
-						.map(
-							p ->
-									ControlledField
-										.newInstance(p.getQualifier().getClassid(), p.getValue())).collect(Collectors.toList())));
+					value -> out
+						.setPid(
+							value
+								.stream()
+								.map(
+									p -> ControlledField
+										.newInstance(p.getQualifier().getClassid(), p.getValue()))
+								.collect(Collectors.toList())));
 
 			oStr = Optional.ofNullable(input.getDateofacceptance());
 			if (oStr.isPresent()) {
@@ -298,11 +299,10 @@ public class ResultMapper implements Serializable {
 				out.setPublisher(oStr.get().getValue());
 			}
 
-
 			Optional
 				.ofNullable(input.getSource())
-				.ifPresent(value -> out.setSource(value.stream().map(s -> s.getValue()).collect(Collectors.toList()) ));
-					//	value.stream().forEach(s -> sourceList.add(s.getValue())));
+				.ifPresent(value -> out.setSource(value.stream().map(s -> s.getValue()).collect(Collectors.toList())));
+			// value.stream().forEach(s -> sourceList.add(s.getValue())));
 			// out.setSource(input.getSource().stream().map(s -> s.getValue()).collect(Collectors.toList()));
 			List<Subject> subjectList = new ArrayList<>();
 			Optional
@@ -577,48 +577,60 @@ public class ResultMapper implements Serializable {
 		Optional<DataInfo> di = Optional.ofNullable(pid.getDataInfo());
 		if (di.isPresent()) {
 			return Pid
-					.newInstance(
-							ControlledField
-									.newInstance(
-											pid.getQualifier().getClassid(),
-											pid.getValue()),
-							Provenance
-									.newInstance(
-											di.get().getProvenanceaction().getClassname(),
-											di.get().getTrust()));
+				.newInstance(
+					ControlledField
+						.newInstance(
+							pid.getQualifier().getClassid(),
+							pid.getValue()),
+					Provenance
+						.newInstance(
+							di.get().getProvenanceaction().getClassname(),
+							di.get().getTrust()));
 		} else {
 			return Pid
-					.newInstance(
-							ControlledField
-									.newInstance(
-											pid.getQualifier().getClassid(),
-											pid.getValue())
+				.newInstance(
+					ControlledField
+						.newInstance(
+							pid.getQualifier().getClassid(),
+							pid.getValue())
 
-					);
+				);
 		}
 	}
 
 	private static Pid getOrcid(List<StructuredProperty> p) {
 		List<StructuredProperty> pid_list = p.stream().map(pid -> {
 			if (pid.getQualifier().getClassid().equals(ModelConstants.ORCID) ||
-					(pid.getQualifier().getClassid().equals(ModelConstants.ORCID_PENDING))){
+				(pid.getQualifier().getClassid().equals(ModelConstants.ORCID_PENDING))) {
 				return pid;
 			}
-			return  null;
+			return null;
 		}).filter(pid -> pid != null).collect(Collectors.toList());
 
-		if(pid_list.size() == 1){
+		if (pid_list.size() == 1) {
 			return getAuthorPid(pid_list.get(0));
 		}
 
-		List<StructuredProperty> orcid = pid_list.stream().filter(ap -> ap.getQualifier().getClassid()
-				.equals(ModelConstants.ORCID)).collect(Collectors.toList());
-		if(orcid.size() == 1){
+		List<StructuredProperty> orcid = pid_list
+			.stream()
+			.filter(
+				ap -> ap
+					.getQualifier()
+					.getClassid()
+					.equals(ModelConstants.ORCID))
+			.collect(Collectors.toList());
+		if (orcid.size() == 1) {
 			return getAuthorPid(orcid.get(0));
 		}
-		orcid = pid_list.stream().filter(ap -> ap.getQualifier().getClassid()
-				.equals(ModelConstants.ORCID_PENDING)).collect(Collectors.toList());
-		if(orcid.size() == 1){
+		orcid = pid_list
+			.stream()
+			.filter(
+				ap -> ap
+					.getQualifier()
+					.getClassid()
+					.equals(ModelConstants.ORCID_PENDING))
+			.collect(Collectors.toList());
+		if (orcid.size() == 1) {
 			return getAuthorPid(orcid.get(0));
 		}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
index 6cdd741ea1..9713247446 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
@@ -86,10 +86,10 @@ public class SaveCommunityMap implements Serializable {
 
 	private void saveCommunityMap(boolean singleCommunity, String community_id)
 		throws ISLookUpException, IOException, DocumentException, SAXException {
-        writer
-                .write(
-                        Utils.OBJECT_MAPPER
-                                .writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
-    }
+		writer
+			.write(
+				Utils.OBJECT_MAPPER
+					.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
+	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
index edd6d9b234..3508e41262 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
@@ -8,8 +8,6 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.stream.Collectors;
 
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.dump.oaf.community.Validated;
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
@@ -28,9 +26,11 @@ import org.xml.sax.SAXException;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.dump.oaf.Provenance;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Funder;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Validated;
 import eu.dnetlib.dhp.schema.oaf.DataInfo;
 import eu.dnetlib.dhp.schema.oaf.Field;
 import eu.dnetlib.dhp.schema.oaf.Relation;
@@ -80,7 +80,9 @@ public class SparkPrepareResultProject implements Serializable {
 	private static void prepareResultProjectList(SparkSession spark, String inputPath, String outputPath) {
 		Dataset<Relation> relation = Utils
 			.readPath(spark, inputPath + "/relation", Relation.class)
-			.filter("dataInfo.deletedbyinference = false and lower(relClass) = '" + ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
+			.filter(
+				"dataInfo.deletedbyinference = false and lower(relClass) = '"
+					+ ModelConstants.IS_PRODUCED_BY.toLowerCase() + "'");
 		Dataset<eu.dnetlib.dhp.schema.oaf.Project> projects = Utils
 			.readPath(spark, inputPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class);
 
@@ -159,7 +161,7 @@ public class SparkPrepareResultProject implements Serializable {
 			provenance.setTrust(di.get().getTrust());
 			p.setProvenance(provenance);
 		}
-		if (relation.getValidated()){
+		if (relation.getValidated()) {
 			p.setValidated(Validated.newInstance(relation.getValidated(), relation.getValidationDate()));
 		}
 		return p;
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
index 7441baaef1..7f64db41cc 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpGraphEntities.java
@@ -9,7 +9,6 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.stream.Collectors;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.ForeachFunction;
@@ -23,6 +22,8 @@ import org.dom4j.DocumentException;
 import org.dom4j.Node;
 import org.dom4j.io.SAXReader;
 
+import com.fasterxml.jackson.databind.ObjectMapper;
+
 import eu.dnetlib.dhp.oa.graph.dump.DumpProducts;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
@@ -453,18 +454,20 @@ public class DumpGraphEntities implements Serializable {
 
 	private static <E extends OafEntity> void organizationMap(SparkSession spark, String inputPath, String outputPath,
 		Class<E> inputClazz) {
-		Utils.readPath(spark, inputPath, inputClazz)
-				.map(
-						(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
-						Encoders.bean(Organization.class))
-				.filter((FilterFunction<Organization>) o -> o!= null)
-				.write()
-				.mode(SaveMode.Overwrite)
-				.option("compression", "gzip")
-				.json(outputPath);
+		Utils
+			.readPath(spark, inputPath, inputClazz)
+			.map(
+				(MapFunction<E, Organization>) o -> mapOrganization((eu.dnetlib.dhp.schema.oaf.Organization) o),
+				Encoders.bean(Organization.class))
+			.filter((FilterFunction<Organization>) o -> o != null)
+			.write()
+			.mode(SaveMode.Overwrite)
+			.option("compression", "gzip")
+			.json(outputPath);
 	}
 
-	private static eu.dnetlib.dhp.schema.dump.oaf.graph.Organization mapOrganization(eu.dnetlib.dhp.schema.oaf.Organization org) {
+	private static eu.dnetlib.dhp.schema.dump.oaf.graph.Organization mapOrganization(
+		eu.dnetlib.dhp.schema.oaf.Organization org) {
 		if (org.getDataInfo().getDeletedbyinference())
 			return null;
 		Organization organization = new Organization();
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
index be1f211710..88c92da53d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
@@ -5,8 +5,6 @@ import java.io.StringReader;
 import java.util.*;
 import java.util.function.Consumer;
 
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.common.ModelSupport;
 import org.dom4j.Document;
 import org.dom4j.DocumentException;
 import org.dom4j.Element;
@@ -15,6 +13,8 @@ import org.dom4j.io.SAXReader;
 import org.jetbrains.annotations.NotNull;
 import org.xml.sax.SAXException;
 
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.utils.DHPUtils;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
@@ -140,7 +140,7 @@ public class QueryInformationSystem {
 	}
 
 	private String makeOpenaireId(Node el, String prefix) {
-		if (!prefix.equals(ModelSupport.entityIdPrefix.get("project"))){
+		if (!prefix.equals(ModelSupport.entityIdPrefix.get("project"))) {
 			return null;
 		}
 		String funder = null;
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
index 7370b43f8f..ab7e7e595d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
@@ -107,7 +107,7 @@ public class SparkDumpRelationJob implements Serializable {
 						}
 					}
 				}
-				if(relation.getValidated()){
+				if (relation.getValidated()) {
 					rel_new.setValidated(relation.getValidated());
 					rel_new.setValidationDate(relation.getValidationDate());
 				}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index d520a9c6ab..9cddba3c54 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -41,9 +41,9 @@ public class SparkDumpFunderResults implements Serializable {
 		parser.parseArgument(args);
 
 		Boolean isSparkSessionManaged = Optional
-				.ofNullable(parser.get("isSparkSessionManaged"))
-				.map(Boolean::valueOf)
-				.orElse(Boolean.TRUE);
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
 		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
 
 		final String inputPath = parser.get("sourcePath");
@@ -58,32 +58,31 @@ public class SparkDumpFunderResults implements Serializable {
 		SparkConf conf = new SparkConf();
 
 		runWithSparkSession(
-				conf,
-				isSparkSessionManaged,
-				spark -> {
-					Utils.removeOutputDir(spark, outputPath);
-					writeResultProjectList(spark, inputPath, outputPath, graphPath);
-				});
+			conf,
+			isSparkSessionManaged,
+			spark -> {
+				Utils.removeOutputDir(spark, outputPath);
+				writeResultProjectList(spark, inputPath, outputPath, graphPath);
+			});
 	}
 
 	private static void writeResultProjectList(SparkSession spark, String inputPath, String outputPath,
-											   String graphPath) {
+		String graphPath) {
 
 		Dataset<eu.dnetlib.dhp.schema.oaf.Project> project = Utils
-				.readPath(spark, graphPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class);
+			.readPath(spark, graphPath + "/project", eu.dnetlib.dhp.schema.oaf.Project.class);
 
 		Dataset<CommunityResult> result = Utils
-				.readPath(spark, inputPath + "/publication", CommunityResult.class)
-				.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
-				.union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class))
-				.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
-
+			.readPath(spark, inputPath + "/publication", CommunityResult.class)
+			.union(Utils.readPath(spark, inputPath + "/dataset", CommunityResult.class))
+			.union(Utils.readPath(spark, inputPath + "/orp", CommunityResult.class))
+			.union(Utils.readPath(spark, inputPath + "/software", CommunityResult.class));
 
 		List<String> funderList = project
-				.select("id")
-				.map((MapFunction<Row, String>) value -> value.getString(0).substring(0, 15), Encoders.STRING())
-				.distinct()
-				.collectAsList();
+			.select("id")
+			.map((MapFunction<Row, String>) value -> value.getString(0).substring(0, 15), Encoders.STRING())
+			.distinct()
+			.collectAsList();
 
 		funderList.forEach(funder -> {
 			String fundernsp = funder.substring(3);
@@ -104,7 +103,7 @@ public class SparkDumpFunderResults implements Serializable {
 	}
 
 	private static void dumpResults(String nsp, Dataset<CommunityResult> results, String outputPath,
-									String funderName) {
+		String funderName) {
 
 		results.map((MapFunction<CommunityResult, CommunityResult>) r -> {
 			if (!Optional.ofNullable(r.getProjects()).isPresent()) {
@@ -123,15 +122,15 @@ public class SparkDumpFunderResults implements Serializable {
 			}
 			return null;
 		}, Encoders.bean(CommunityResult.class))
-				.filter(Objects::nonNull)
-				.write()
-				.mode(SaveMode.Overwrite)
-				.option("compression", "gzip")
-				.json(outputPath + "/" + funderName);
+			.filter(Objects::nonNull)
+			.write()
+			.mode(SaveMode.Overwrite)
+			.option("compression", "gzip")
+			.json(outputPath + "/" + funderName);
 	}
 
 	private static void writeFunderResult(String funder, Dataset<CommunityResult> results, String outputPath,
-										  String funderDump) {
+		String funderDump) {
 
 		if (funder.startsWith("40|irb")) {
 			dumpResults(funder, results, outputPath, "HRZZ");
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
index e17aa285c0..156ae6d633 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
@@ -80,7 +80,6 @@ public class SparkResultLinkedToProject implements Serializable {
 	private static <R extends Result> void writeResultsLinkedToProjects(SparkSession spark, Class<R> inputClazz,
 		String inputPath, String outputPath, String graphPath) {
 
-
 		Dataset<R> results = Utils
 			.readPath(spark, inputPath, inputClazz)
 			.filter("dataInfo.deletedbyinference = false and datainfo.invisible = false");
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
index 3a4f05fb59..bf6301ec47 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/DumpJobTest.java
@@ -7,17 +7,10 @@ import java.nio.file.Path;
 import java.util.Arrays;
 import java.util.List;
 
-import com.fasterxml.jackson.core.JsonProcessingException;
-import com.sun.xml.internal.ws.policy.AssertionSet;
-import eu.dnetlib.dhp.schema.common.ModelConstants;
-import eu.dnetlib.dhp.schema.dump.oaf.Instance;
-import eu.dnetlib.dhp.schema.dump.oaf.OpenAccessRoute;
 import org.apache.commons.io.FileUtils;
-import org.apache.neethi.Assertion;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
-import org.apache.spark.api.java.function.ForeachFunction;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
 import org.apache.spark.sql.SparkSession;
@@ -25,10 +18,14 @@ import org.junit.jupiter.api.*;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
+import com.fasterxml.jackson.core.JsonProcessingException;
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.google.gson.Gson;
 
 import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.dump.oaf.Instance;
+import eu.dnetlib.dhp.schema.dump.oaf.OpenAccessRoute;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.GraphResult;
 import eu.dnetlib.dhp.schema.oaf.Dataset;
@@ -145,70 +142,121 @@ public class DumpJobTest {
 	}
 
 	@Test
-	public void testPublicationDump(){
+	public void testPublicationDump() {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(
-						// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+			.run(
+				// false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<GraphResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
 
 		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
 
 		GraphResult gr = verificationDataset.first();
 
-
 		Assertions.assertEquals(2, gr.getMeasures().size());
-		Assertions.assertTrue(gr.getMeasures().stream().anyMatch(m -> m.getKey().equals("influence")
-				&& m.getValue().equals("1.62759106106e-08")));
-		Assertions.assertTrue(gr.getMeasures().stream().anyMatch(m -> m.getKey().equals("popularity")
-				&& m.getValue().equals("0.22519296")));
+		Assertions
+			.assertTrue(
+				gr
+					.getMeasures()
+					.stream()
+					.anyMatch(
+						m -> m.getKey().equals("influence")
+							&& m.getValue().equals("1.62759106106e-08")));
+		Assertions
+			.assertTrue(
+				gr
+					.getMeasures()
+					.stream()
+					.anyMatch(
+						m -> m.getKey().equals("popularity")
+							&& m.getValue().equals("0.22519296")));
 
 		Assertions.assertEquals(6, gr.getAuthor().size());
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Nikolaidou,Charitini") &&
-				a.getName().equals("Charitini") && a.getSurname().equals("Nikolaidou")
-				&& a.getRank() == 1 && a.getPid() == null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Nikolaidou,Charitini") &&
+							a.getName().equals("Charitini") && a.getSurname().equals("Nikolaidou")
+							&& a.getRank() == 1 && a.getPid() == null));
 
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Votsi,Nefta") &&
-				a.getName().equals("Nefta") && a.getSurname().equals("Votsi")
-				&& a.getRank() == 2 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
-				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Votsi,Nefta") &&
+							a.getName().equals("Nefta") && a.getSurname().equals("Votsi")
+							&& a.getRank() == 2 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
+							&& a.getPid().getId().getValue().equals("0000-0001-6651-1178")
+							&& a.getPid().getProvenance() != null));
 
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Sgardelis,Steanos") &&
-				a.getName().equals("Steanos") && a.getSurname().equals("Sgardelis")
-				&& a.getRank() == 3 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
-				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Sgardelis,Steanos") &&
+							a.getName().equals("Steanos") && a.getSurname().equals("Sgardelis")
+							&& a.getRank() == 3 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
+							&& a.getPid().getId().getValue().equals("0000-0001-6651-1178")
+							&& a.getPid().getProvenance() != null));
 
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Halley,John") &&
-				a.getName().equals("John") && a.getSurname().equals("Halley")
-				&& a.getRank() == 4 && a.getPid() == null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Halley,John") &&
+							a.getName().equals("John") && a.getSurname().equals("Halley")
+							&& a.getRank() == 4 && a.getPid() == null));
 
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Pantis,John") &&
-				a.getName().equals("John") && a.getSurname().equals("Pantis")
-				&& a.getRank() == 5 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
-				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Pantis,John") &&
+							a.getName().equals("John") && a.getSurname().equals("Pantis")
+							&& a.getRank() == 5 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID)
+							&& a.getPid().getId().getValue().equals("0000-0001-6651-1178")
+							&& a.getPid().getProvenance() != null));
 
-		Assertions.assertTrue(gr.getAuthor().stream().anyMatch(a -> a.getFullname().equals("Tsiafouli,Maria") &&
-				a.getName().equals("Maria") && a.getSurname().equals("Tsiafouli")
-				&& a.getRank() == 6 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
-				&& a.getPid().getId().getValue().equals("0000-0001-6651-1178") && a.getPid().getProvenance() != null));
+		Assertions
+			.assertTrue(
+				gr
+					.getAuthor()
+					.stream()
+					.anyMatch(
+						a -> a.getFullname().equals("Tsiafouli,Maria") &&
+							a.getName().equals("Maria") && a.getSurname().equals("Tsiafouli")
+							&& a.getRank() == 6 && a.getPid().getId().getScheme().equals(ModelConstants.ORCID_PENDING)
+							&& a.getPid().getId().getValue().equals("0000-0001-6651-1178")
+							&& a.getPid().getProvenance() != null));
 
 		Assertions.assertEquals("publication", gr.getType());
 
@@ -216,27 +264,52 @@ public class DumpJobTest {
 		Assertions.assertEquals("English", gr.getLanguage().getLabel());
 
 		Assertions.assertEquals(1, gr.getCountry().size());
-		Assertions.assertEquals("IT" , gr.getCountry().get(0).getCode());
-		Assertions.assertEquals("Italy" , gr.getCountry().get(0).getLabel());
-		Assertions.assertTrue( gr.getCountry().get(0).getProvenance() == null);
+		Assertions.assertEquals("IT", gr.getCountry().get(0).getCode());
+		Assertions.assertEquals("Italy", gr.getCountry().get(0).getLabel());
+		Assertions.assertTrue(gr.getCountry().get(0).getProvenance() == null);
 
 		Assertions.assertEquals(12, gr.getSubjects().size());
-		Assertions.assertTrue(gr.getSubjects().stream().anyMatch(s -> s.getSubject().getValue().equals("Ecosystem Services hotspots")
-				&& s.getSubject().getScheme().equals("ACM") && s.getProvenance() != null  &&
-				s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
-		Assertions.assertTrue(gr.getSubjects().stream().anyMatch(s -> s.getSubject().getValue().equals("Natura 2000")
-				&& s.getSubject().getScheme().equals("") && s.getProvenance() != null  &&
-				s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
+		Assertions
+			.assertTrue(
+				gr
+					.getSubjects()
+					.stream()
+					.anyMatch(
+						s -> s.getSubject().getValue().equals("Ecosystem Services hotspots")
+							&& s.getSubject().getScheme().equals("ACM") && s.getProvenance() != null &&
+							s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
+		Assertions
+			.assertTrue(
+				gr
+					.getSubjects()
+					.stream()
+					.anyMatch(
+						s -> s.getSubject().getValue().equals("Natura 2000")
+							&& s.getSubject().getScheme().equals("") && s.getProvenance() != null &&
+							s.getProvenance().getProvenance().equals("sysimport:crosswalk:repository")));
 
-		Assertions.assertEquals("Ecosystem Service capacity is higher in areas of multiple designation types",
+		Assertions
+			.assertEquals(
+				"Ecosystem Service capacity is higher in areas of multiple designation types",
 				gr.getMaintitle());
 
 		Assertions.assertEquals(null, gr.getSubtitle());
 
 		Assertions.assertEquals(1, gr.getDescription().size());
 
-		Assertions.assertTrue(gr.getDescription().get(0).startsWith("The implementation of the Ecosystem Service (ES) concept into practice"));
-		Assertions.assertTrue(gr.getDescription().get(0).endsWith("start complying with new standards and demands for nature conservation and environmental management."));
+		Assertions
+			.assertTrue(
+				gr
+					.getDescription()
+					.get(0)
+					.startsWith("The implementation of the Ecosystem Service (ES) concept into practice"));
+		Assertions
+			.assertTrue(
+				gr
+					.getDescription()
+					.get(0)
+					.endsWith(
+						"start complying with new standards and demands for nature conservation and environmental management."));
 
 		Assertions.assertEquals("2017-01-01", gr.getPublicationdate());
 
@@ -255,7 +328,9 @@ public class DumpJobTest {
 		Assertions.assertEquals(0, gr.getCoverage().size());
 
 		Assertions.assertEquals(ModelConstants.ACCESS_RIGHT_OPEN, gr.getBestaccessright().getLabel());
-		Assertions.assertEquals(Constants.accessRightsCoarMap.get(ModelConstants.ACCESS_RIGHT_OPEN), gr.getBestaccessright().getCode());
+		Assertions
+			.assertEquals(
+				Constants.accessRightsCoarMap.get(ModelConstants.ACCESS_RIGHT_OPEN), gr.getBestaccessright().getCode());
 		Assertions.assertEquals(null, gr.getBestaccessright().getOpenAccessRoute());
 
 		Assertions.assertEquals("One Ecosystem", gr.getContainer().getName());
@@ -284,12 +359,16 @@ public class DumpJobTest {
 		Assertions.assertEquals("50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2", gr.getId());
 
 		Assertions.assertEquals(2, gr.getOriginalId().size());
-		Assertions.assertTrue(gr.getOriginalId().contains("50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2")
-				&& gr.getOriginalId().contains("10.3897/oneeco.2.e13718"));
+		Assertions
+			.assertTrue(
+				gr.getOriginalId().contains("50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2")
+					&& gr.getOriginalId().contains("10.3897/oneeco.2.e13718"));
 
 		Assertions.assertEquals(1, gr.getPid().size());
-		Assertions.assertTrue(gr.getPid().get(0).getScheme().equals("doi")
-				&& gr.getPid().get(0).getValue().equals("10.1016/j.triboint.2014.05.004"));
+		Assertions
+			.assertTrue(
+				gr.getPid().get(0).getScheme().equals("doi")
+					&& gr.getPid().get(0).getValue().equals("10.1016/j.triboint.2014.05.004"));
 
 		Assertions.assertEquals("2020-03-23T00:20:51.392Z", gr.getDateofcollection());
 
@@ -298,53 +377,63 @@ public class DumpJobTest {
 		Instance instance = gr.getInstance().get(0);
 		Assertions.assertEquals(0, instance.getPid().size());
 		Assertions.assertEquals(1, instance.getAlternateIdentifier().size());
-		Assertions.assertTrue(instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
-				&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
+		Assertions
+			.assertTrue(
+				instance.getAlternateIdentifier().get(0).getScheme().equals("doi")
+					&& instance.getAlternateIdentifier().get(0).getValue().equals("10.3897/oneeco.2.e13718"));
 		Assertions.assertEquals(null, instance.getLicense());
-		Assertions.assertTrue(instance.getAccessright().getCode().equals(Constants.accessRightsCoarMap
-				.get(ModelConstants.ACCESS_RIGHT_OPEN)));
+		Assertions
+			.assertTrue(
+				instance
+					.getAccessright()
+					.getCode()
+					.equals(
+						Constants.accessRightsCoarMap
+							.get(ModelConstants.ACCESS_RIGHT_OPEN)));
 		Assertions.assertTrue(instance.getAccessright().getLabel().equals(ModelConstants.ACCESS_RIGHT_OPEN));
 		Assertions.assertTrue(instance.getAccessright().getOpenAccessRoute().equals(OpenAccessRoute.green));
 		Assertions.assertTrue(instance.getType().equals("Article"));
 		Assertions.assertEquals(2, instance.getUrl().size());
-		Assertions.assertTrue(instance.getUrl().contains("https://doi.org/10.3897/oneeco.2.e13718")
-				&& instance.getUrl().contains("https://oneecosystem.pensoft.net/article/13718/"));
-		Assertions.assertEquals("2017-01-01",instance.getPublicationdate());
-		Assertions.assertEquals(null,instance.getArticleprocessingcharge());
+		Assertions
+			.assertTrue(
+				instance.getUrl().contains("https://doi.org/10.3897/oneeco.2.e13718")
+					&& instance.getUrl().contains("https://oneecosystem.pensoft.net/article/13718/"));
+		Assertions.assertEquals("2017-01-01", instance.getPublicationdate());
+		Assertions.assertEquals(null, instance.getArticleprocessingcharge());
 		Assertions.assertEquals("peerReviewed", instance.getRefereed());
 	}
 
-
 	@Test
-	public void testDatasetDump(){
+	public void testDatasetDump() {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/dataset_extendedinstance")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(false, sourcePath, workingDir.toString() + "/result",
-						communityMapPath, Dataset.class,
-						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+			.run(
+				false, sourcePath, workingDir.toString() + "/result",
+				communityMapPath, Dataset.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<GraphResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
 
 		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
 
 		Assertions.assertEquals(1, verificationDataset.filter("type = 'dataset'").count());
 
-		//the common fields in the result have been already checked. Now checking only
+		// the common fields in the result have been already checked. Now checking only
 		// community specific fields
 
 		GraphResult gr = verificationDataset.first();
@@ -353,10 +442,33 @@ public class DumpJobTest {
 		Assertions.assertEquals(2, gr.getGeolocation().stream().filter(gl -> gl.getBox().equals("")).count());
 		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("")).count());
 		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("")).count());
-		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada")).count());
-		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
-		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals("")).count());
-		Assertions.assertEquals(1, gr.getGeolocation().stream().filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals("")).count());
+		Assertions
+			.assertEquals(
+				1,
+				gr
+					.getGeolocation()
+					.stream()
+					.filter(gl -> gl.getPlace().equals("18 York St, Ottawa, ON K1N 5S6; Ottawa; Ontario; Canada"))
+					.count());
+		Assertions
+			.assertEquals(
+				1, gr.getGeolocation().stream().filter(gl -> gl.getPoint().equals("45.427242 -75.693904")).count());
+		Assertions
+			.assertEquals(
+				1,
+				gr
+					.getGeolocation()
+					.stream()
+					.filter(gl -> gl.getPoint().equals("") && !gl.getPlace().equals(""))
+					.count());
+		Assertions
+			.assertEquals(
+				1,
+				gr
+					.getGeolocation()
+					.stream()
+					.filter(gl -> !gl.getPoint().equals("") && gl.getPlace().equals(""))
+					.count());
 
 		Assertions.assertEquals("1024Gb", gr.getSize());
 
@@ -373,30 +485,30 @@ public class DumpJobTest {
 	}
 
 	@Test
-	public void testSoftwareDump(){
+	public void testSoftwareDump() {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/software_extendedinstance")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(false, sourcePath, workingDir.toString() + "/result",
-						communityMapPath, Software.class,
-						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+			.run(
+				false, sourcePath, workingDir.toString() + "/result",
+				communityMapPath, Software.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
-
 		JavaRDD<GraphResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
 
 		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
 
@@ -412,7 +524,6 @@ public class DumpJobTest {
 
 		Assertions.assertEquals("perl", gr.getProgrammingLanguage());
 
-
 		Assertions.assertEquals(null, gr.getContainer());
 		Assertions.assertEquals(null, gr.getContactperson());
 		Assertions.assertEquals(null, gr.getContactgroup());
@@ -424,30 +535,30 @@ public class DumpJobTest {
 	}
 
 	@Test
-	public void testOrpDump(){
+	public void testOrpDump() {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/orp_extendedinstance")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(false, sourcePath, workingDir.toString() + "/result",
-						communityMapPath, OtherResearchProduct.class,
-						GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
+			.run(
+				false, sourcePath, workingDir.toString() + "/result",
+				communityMapPath, OtherResearchProduct.class,
+				GraphResult.class, Constants.DUMPTYPE.COMPLETE.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
-
 		JavaRDD<GraphResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, GraphResult.class));
 
 		org.apache.spark.sql.Dataset<GraphResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(GraphResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
 
@@ -466,7 +577,6 @@ public class DumpJobTest {
 		Assertions.assertTrue(gr.getTool().contains("tool1"));
 		Assertions.assertTrue(gr.getTool().contains("tool2"));
 
-
 		Assertions.assertEquals(null, gr.getContainer());
 		Assertions.assertEquals(null, gr.getDocumentationUrl());
 		Assertions.assertEquals(null, gr.getCodeRepositoryUrl());
@@ -481,32 +591,33 @@ public class DumpJobTest {
 	public void testPublicationDumpCommunity() throws JsonProcessingException {
 
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultDump/publication_extendedinstance")
+			.getPath();
 
 		final String communityMapPath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/communityMapPath/communitymap.json")
+			.getPath();
 
 		DumpProducts dump = new DumpProducts();
 		dump
-				.run(false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
-						CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
+			.run(
+				false, sourcePath, workingDir.toString() + "/result", communityMapPath, Publication.class,
+				CommunityResult.class, Constants.DUMPTYPE.COMMUNITY.getType());
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<CommunityResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
 
 		Assertions.assertEquals(1, verificationDataset.count());
 
 		Assertions.assertEquals(1, verificationDataset.filter("type = 'publication'").count());
 
-		//the common fields in the result have been already checked. Now checking only
+		// the common fields in the result have been already checked. Now checking only
 		// community specific fields
 
 		CommunityResult cr = verificationDataset.first();
@@ -519,15 +630,20 @@ public class DumpJobTest {
 		Assertions.assertEquals("0.9", cr.getContext().get(0).getProvenance().get(0).getTrust());
 
 		Assertions.assertEquals(1, cr.getCollectedfrom().size());
-		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
+		Assertions
+			.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getCollectedfrom().get(0).getKey());
 		Assertions.assertEquals("Pensoft", cr.getCollectedfrom().get(0).getValue());
 
 		Assertions.assertEquals(1, cr.getInstance().size());
-		Assertions.assertEquals("10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db", cr.getInstance().get(0).getCollectedfrom().getKey());
+		Assertions
+			.assertEquals(
+				"10|openaire____::fdc7e0400d8c1634cdaf8051dbae23db",
+				cr.getInstance().get(0).getCollectedfrom().getKey());
 		Assertions.assertEquals("Pensoft", cr.getInstance().get(0).getCollectedfrom().getValue());
-		Assertions.assertEquals("10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
-		Assertions.assertEquals("One Ecosystem",cr.getInstance().get(0).getHostedby().getValue());
-
+		Assertions
+			.assertEquals(
+				"10|openaire____::e707e544b9a5bd23fc27fbfa65eb60dd", cr.getInstance().get(0).getHostedby().getKey());
+		Assertions.assertEquals("One Ecosystem", cr.getInstance().get(0).getHostedby().getValue());
 
 	}
 
@@ -587,8 +703,6 @@ public class DumpJobTest {
 
 		Assertions.assertTrue(verificationDataset.filter("type = 'dataset'").count() == 90);
 
-
-
 	}
 
 	@Test
@@ -650,7 +764,6 @@ public class DumpJobTest {
 
 		Assertions.assertEquals(0, verificationDataset.count());
 
-
 	}
 
 	@Test
@@ -718,7 +831,6 @@ public class DumpJobTest {
 
 		Assertions.assertEquals(6, verificationDataset.filter("type = 'software'").count());
 
-
 	}
 
 	@Test
@@ -814,7 +926,6 @@ public class DumpJobTest {
 
 		Assertions.assertEquals(23, verificationDataset.count());
 
-
 		Assertions.assertEquals(23, verificationDataset.filter("type = 'publication'").count());
 
 		verificationDataset.createOrReplaceTempView("check");
@@ -832,7 +943,6 @@ public class DumpJobTest {
 
 		Assertions.assertTrue(temp.filter("id = '50|dedup_wf_001::01e6a28565ca01376b7548e530c6f6e8'").count() == 1);
 
-
 	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
index c950f1c91d..a17861ad71 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
@@ -8,16 +8,17 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 
 import org.apache.commons.io.FileUtils;
-import org.apache.neethi.Assertion;
+
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
-import org.apache.spark.api.java.function.ForeachFunction;
+
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
 import org.apache.spark.sql.SparkSession;
 import org.junit.jupiter.api.AfterAll;
+
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Test;
 import org.slf4j.Logger;
@@ -229,107 +230,98 @@ public class PrepareResultProjectJobTest {
 	public void testMatchValidated() throws Exception {
 
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/resultProject/match_validatedRels")
+			.getPath();
 
 		SparkPrepareResultProject.main(new String[] {
-				"-isSparkSessionManaged", Boolean.FALSE.toString(),
-				"-outputPath", workingDir.toString() + "/preparedInfo",
-				"-sourcePath", sourcePath
+			"-isSparkSessionManaged", Boolean.FALSE.toString(),
+			"-outputPath", workingDir.toString() + "/preparedInfo",
+			"-sourcePath", sourcePath
 		});
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<ResultProject> tmp = sc
-				.textFile(workingDir.toString() + "/preparedInfo")
-				.map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class));
+			.textFile(workingDir.toString() + "/preparedInfo")
+			.map(item -> OBJECT_MAPPER.readValue(item, ResultProject.class));
 
 		org.apache.spark.sql.Dataset<ResultProject> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(ResultProject.class));
+			.createDataset(tmp.rdd(), Encoders.bean(ResultProject.class));
 
-		Assertions.assertTrue(verificationDataset.count() == 2);
+		assertEquals(2, verificationDataset.count() );
 
-		Assertions
-				.assertEquals(
-						1,
-						verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
-		Assertions
-				.assertEquals(
-						1,
-						verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
+		assertEquals(
+				1,
+				verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
+		assertEquals(
+				1,
+				verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
 
 		verificationDataset.createOrReplaceTempView("dataset");
 
-		String query = "select resultId, MyT.id project , MyT.title title, MyT.acronym acronym , MyT.provenance.provenance provenance, " +
-				"MyT.validated.validatedByFunder, MyT.validated.validationDate "
-				+ "from dataset "
-				+ "lateral view explode(projectsList) p as MyT ";
+		String query = "select resultId, MyT.id project , MyT.title title, MyT.acronym acronym , MyT.provenance.provenance provenance, "
+			+
+			"MyT.validated.validatedByFunder, MyT.validated.validationDate "
+			+ "from dataset "
+			+ "lateral view explode(projectsList) p as MyT ";
 
 		org.apache.spark.sql.Dataset<Row> resultExplodedProvenance = spark.sql(query);
-		Assertions.assertEquals(3, resultExplodedProvenance.count());
-		Assertions.assertEquals(3, resultExplodedProvenance.filter("validatedByFunder = true").count());
-		Assertions
-				.assertEquals(
-						2,
-						resultExplodedProvenance
-								.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
-								.count());
+		assertEquals(3, resultExplodedProvenance.count());
+		assertEquals(3, resultExplodedProvenance.filter("validatedByFunder = true").count());
+		assertEquals(
+				2,
+				resultExplodedProvenance
+					.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'")
-								.count());
+		assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						2,
-						resultExplodedProvenance
-								.filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'")
-								.count());
+		assertEquals(
+				2,
+				resultExplodedProvenance
+					.filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter(
-										"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
-												"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
-												"and validatedByFunder = true " +
-												"and validationDate = '2021-08-06'")
-								.count());
+		assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter(
+						"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+							"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+							"and validatedByFunder = true " +
+							"and validationDate = '2021-08-06'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter(
-										"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
-												"and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' " +
-												"and validatedByFunder = true and validationDate = '2021-08-04'")
-								.count());
+		assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter(
+						"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+							"and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' " +
+							"and validatedByFunder = true and validationDate = '2021-08-04'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'")
-								.count());
+		assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter(
-										"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' " +
-												"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
-												"and validatedByFunder = true and validationDate = '2021-08-05'")
-								.count());
+		assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter(
+						"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' " +
+							"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+							"and validatedByFunder = true and validationDate = '2021-08-05'")
+					.count());
 
-		Assertions
-				.assertEquals(
-						3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
+		assertEquals(
+				3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
 
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
index 61102232e5..9710e45537 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/UpdateProjectInfoTest.java
@@ -8,8 +8,6 @@ import java.util.HashMap;
 import java.util.logging.Filter;
 import java.util.stream.Collectors;
 
-import eu.dnetlib.dhp.schema.dump.oaf.community.Funder;
-import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
 import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
@@ -31,6 +29,8 @@ import com.fasterxml.jackson.databind.ObjectMapper;
 import eu.dnetlib.dhp.oa.graph.dump.community.SparkUpdateProjectInfo;
 import eu.dnetlib.dhp.schema.dump.oaf.Result;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Funder;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
 
 public class UpdateProjectInfoTest {
 
@@ -142,26 +142,26 @@ public class UpdateProjectInfoTest {
 	}
 
 	@Test
-	public void testValidatedRelation() throws Exception{
+	public void testValidatedRelation() throws Exception {
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/addProjectInfo")
+			.getPath();
 
 		SparkUpdateProjectInfo.main(new String[] {
-				"-isSparkSessionManaged", Boolean.FALSE.toString(),
-				"-preparedInfoPath", sourcePath + "/preparedInfoValidated",
-				"-outputPath", workingDir.toString() + "/result",
-				"-sourcePath", sourcePath + "/publication_extendedmodel"
+			"-isSparkSessionManaged", Boolean.FALSE.toString(),
+			"-preparedInfoPath", sourcePath + "/preparedInfoValidated",
+			"-outputPath", workingDir.toString() + "/result",
+			"-sourcePath", sourcePath + "/publication_extendedmodel"
 		});
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<CommunityResult> tmp = sc
-				.textFile(workingDir.toString() + "/result")
-				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+			.textFile(workingDir.toString() + "/result")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 
 		org.apache.spark.sql.Dataset<CommunityResult> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
+			.createDataset(tmp.rdd(), Encoders.bean(CommunityResult.class));
 
 		verificationDataset.show(false);
 
@@ -169,10 +169,10 @@ public class UpdateProjectInfoTest {
 		verificationDataset.createOrReplaceTempView("dataset");
 
 		String query = "select id, MyT.code code, MyT.title title, MyT.funder.name funderName, MyT.funder.shortName funderShortName, "
-				+
-				"MyT.funder.jurisdiction funderJurisdiction, MyT.funder.fundingStream fundingStream, MyT.validated "
-				+ "from dataset " +
-				"lateral view explode(projects) p as MyT ";
+			+
+			"MyT.funder.jurisdiction funderJurisdiction, MyT.funder.fundingStream fundingStream, MyT.validated "
+			+ "from dataset " +
+			"lateral view explode(projects) p as MyT ";
 
 		org.apache.spark.sql.Dataset<Row> resultExplodedProvenance = spark.sql(query);
 
@@ -180,27 +180,34 @@ public class UpdateProjectInfoTest {
 		resultExplodedProvenance.show(false);
 
 		Assertions
-				.assertEquals(
-						2,
-						resultExplodedProvenance.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2'").count());
+			.assertEquals(
+				2,
+				resultExplodedProvenance.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2'").count());
 
 		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '123455'")
-								.count());
+			.assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '123455'")
+					.count());
 
 		Assertions
-				.assertEquals(
-						1,
-						resultExplodedProvenance
-								.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '119027'")
-								.count());
+			.assertEquals(
+				1,
+				resultExplodedProvenance
+					.filter("id = '50|pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2' and code = '119027'")
+					.count());
 
 		Project project = verificationDataset
-		.map((MapFunction<CommunityResult, Project>) cr -> cr.getProjects().stream().filter(p -> p.getValidated() != null).collect(Collectors.toList()).get(0)
-		, Encoders.bean(Project.class)).first();
+			.map(
+				(MapFunction<CommunityResult, Project>) cr -> cr
+					.getProjects()
+					.stream()
+					.filter(p -> p.getValidated() != null)
+					.collect(Collectors.toList())
+					.get(0),
+				Encoders.bean(Project.class))
+			.first();
 
 		Assertions.assertTrue(project.getFunder().getName().equals("Academy of Finland"));
 		Assertions.assertTrue(project.getFunder().getShortName().equals("AKA"));
@@ -208,18 +215,22 @@ public class UpdateProjectInfoTest {
 		Assertions.assertTrue(project.getFunder().getFundingStream() == null);
 		Assertions.assertTrue(project.getValidated().getValidationDate().equals("2021-08-06"));
 
-
 		project = verificationDataset
-				.map((MapFunction<CommunityResult, Project>) cr -> cr.getProjects().stream().filter(p -> p.getValidated() == null).collect(Collectors.toList()).get(0)
-						, Encoders.bean(Project.class)).first();
-
+			.map(
+				(MapFunction<CommunityResult, Project>) cr -> cr
+					.getProjects()
+					.stream()
+					.filter(p -> p.getValidated() == null)
+					.collect(Collectors.toList())
+					.get(0),
+				Encoders.bean(Project.class))
+			.first();
 
 		Assertions.assertTrue(project.getFunder().getName().equals("European Commission"));
 		Assertions.assertTrue(project.getFunder().getShortName().equals("EC"));
 		Assertions.assertTrue(project.getFunder().getJurisdiction().equals("EU"));
 		Assertions.assertTrue(project.getFunder().getFundingStream().equals("H2020"));
 
-
 	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
index a310448a43..fe178795d7 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpRelationTest.java
@@ -94,7 +94,8 @@ public class DumpRelationTest {
 
 		verificationDataset.createOrReplaceTempView("table");
 
-		verificationDataset.foreach((ForeachFunction<Relation>)r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
+		verificationDataset
+			.foreach((ForeachFunction<Relation>) r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
 
 		Dataset<Row> check = spark
 			.sql(
@@ -134,13 +135,13 @@ public class DumpRelationTest {
 	public void test2() throws Exception {
 
 		final String sourcePath = getClass()
-				.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated")
-				.getPath();
+			.getResource("/eu/dnetlib/dhp/oa/graph/dump/relation/relation_validated")
+			.getPath();
 
 		SparkDumpRelationJob.main(new String[] {
-				"-isSparkSessionManaged", Boolean.FALSE.toString(),
-				"-outputPath", workingDir.toString() + "/relation",
-				"-sourcePath", sourcePath
+			"-isSparkSessionManaged", Boolean.FALSE.toString(),
+			"-outputPath", workingDir.toString() + "/relation",
+			"-sourcePath", sourcePath
 		});
 
 //		dumpCommunityProducts.exec(MOCK_IS_LOOK_UP_URL,Boolean.FALSE, workingDir.toString()+"/dataset",sourcePath,"eu.dnetlib.dhp.schema.oaf.Dataset","eu.dnetlib.dhp.schema.dump.oaf.Dataset");
@@ -148,57 +149,58 @@ public class DumpRelationTest {
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<Relation> tmp = sc
-				.textFile(workingDir.toString() + "/relation")
-				.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
+			.textFile(workingDir.toString() + "/relation")
+			.map(item -> OBJECT_MAPPER.readValue(item, Relation.class));
 
 		org.apache.spark.sql.Dataset<Relation> verificationDataset = spark
-				.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
+			.createDataset(tmp.rdd(), Encoders.bean(Relation.class));
 
 		verificationDataset.createOrReplaceTempView("table");
 
-		verificationDataset.foreach((ForeachFunction<Relation>)r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
+		verificationDataset
+			.foreach((ForeachFunction<Relation>) r -> System.out.println(new ObjectMapper().writeValueAsString(r)));
 
 		Dataset<Row> check = spark
-				.sql(
-						"SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance "
-								+
-								"from table ");
+			.sql(
+				"SELECT reltype.name, source.id source, source.type stype, target.id target,target.type ttype, provenance.provenance "
+					+
+					"from table ");
 
 		Assertions.assertEquals(20, check.filter("name = 'isProvidedBy'").count());
 		Assertions
-				.assertEquals(
-						20, check
-								.filter(
-										"name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " +
-												"provenance = 'Harvested'")
-								.count());
+			.assertEquals(
+				20, check
+					.filter(
+						"name = 'isProvidedBy' and stype = 'datasource' and ttype = 'organization' and " +
+							"provenance = 'Harvested'")
+					.count());
 
 		Assertions.assertEquals(7, check.filter("name = 'isParticipant'").count());
 		Assertions
-				.assertEquals(
-						7, check
-								.filter(
-										"name = 'isParticipant' and stype = 'organization' and ttype = 'project' " +
-												"and provenance = 'Harvested'")
-								.count());
+			.assertEquals(
+				7, check
+					.filter(
+						"name = 'isParticipant' and stype = 'organization' and ttype = 'project' " +
+							"and provenance = 'Harvested'")
+					.count());
 
 		Assertions.assertEquals(1, check.filter("name = 'isAuthorInstitutionOf'").count());
 		Assertions
-				.assertEquals(
-						1, check
-								.filter(
-										"name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " +
-												"and provenance = 'Inferred by OpenAIRE'")
-								.count());
+			.assertEquals(
+				1, check
+					.filter(
+						"name = 'isAuthorInstitutionOf' and stype = 'organization' and ttype = 'result' " +
+							"and provenance = 'Inferred by OpenAIRE'")
+					.count());
 
 		Assertions.assertEquals(2, check.filter("name = 'isProducedBy'").count());
 		Assertions
-				.assertEquals(
-						2, check
-								.filter(
-										"name = 'isProducedBy' and stype = 'project' and ttype = 'result' " +
-												"and provenance = 'Harvested' and validated = true " +
-												"and validationDate = '2021-08-06'")
-								.count());
+			.assertEquals(
+				2, check
+					.filter(
+						"name = 'isProducedBy' and stype = 'project' and ttype = 'result' " +
+							"and provenance = 'Harvested' and validated = true " +
+							"and validationDate = '2021-08-06'")
+					.count());
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
index 7bb6b9ea94..08fcd49a86 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystemTest.java
@@ -6,7 +6,6 @@ import static org.mockito.Mockito.lenient;
 import java.util.*;
 import java.util.function.Consumer;
 
-import eu.dnetlib.dhp.schema.common.ModelSupport;
 import org.junit.jupiter.api.Assertions;
 import org.junit.jupiter.api.BeforeEach;
 import org.junit.jupiter.api.Test;
@@ -14,6 +13,7 @@ import org.junit.jupiter.api.extension.ExtendWith;
 import org.mockito.Mock;
 import org.mockito.junit.jupiter.MockitoExtension;
 
+import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 
@@ -529,7 +529,8 @@ class QueryInformationSystemTest {
 		List<ContextInfo> cInfoList = new ArrayList<>();
 		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
 		queryInformationSystem.execContextRelationQuery();
-		queryInformationSystem.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
+		queryInformationSystem
+			.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
 
 		Assertions.assertEquals(5, cInfoList.size());
 	}
@@ -540,7 +541,8 @@ class QueryInformationSystemTest {
 		List<ContextInfo> cInfoList = new ArrayList<>();
 		final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
 		queryInformationSystem.execContextRelationQuery();
-		queryInformationSystem.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
+		queryInformationSystem
+			.getContextRelation(consumer, "contentproviders", ModelSupport.entityIdPrefix.get("datasource"));
 
 		cInfoList.forEach(contextInfo -> {
 			switch (contextInfo.getId()) {
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
index ad4ea36c44..477481c080 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/funderresult/SplitPerFunderTest.java
@@ -145,8 +145,8 @@ public class SplitPerFunderTest {
 
 		// CONICYT 0
 		tmp = sc
-				.textFile(workingDir.toString() + "/split/CONICYTF")
-				.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
+			.textFile(workingDir.toString() + "/split/CONICYTF")
+			.map(item -> OBJECT_MAPPER.readValue(item, CommunityResult.class));
 		Assertions.assertEquals(0, tmp.count());
 
 	}
diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java
index 8daf318bea..6229ad19b4 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/IndexRecordTransformerTest.java
@@ -84,7 +84,8 @@ public class IndexRecordTransformerTest {
 
 	@Test
 	public void testForEOSCFutureTraining() throws IOException, TransformerException {
-		final String record = IOUtils.toString(getClass().getResourceAsStream("eosc-future/training-notebooks-seadatanet.xml"));
+		final String record = IOUtils
+			.toString(getClass().getResourceAsStream("eosc-future/training-notebooks-seadatanet.xml"));
 		testRecordTransformation(record);
 	}
 
diff --git a/pom.xml b/pom.xml
index 4d3bcee607..4be4257791 100644
--- a/pom.xml
+++ b/pom.xml
@@ -753,7 +753,7 @@
         <mockito-core.version>3.3.3</mockito-core.version>
         <mongodb.driver.version>3.4.2</mongodb.driver.version>
         <vtd.version>[2.12,3.0)</vtd.version>
-        <dhp-schemas.version>[2.7.18]</dhp-schemas.version>
+        <dhp-schemas.version>[2.7.19]</dhp-schemas.version>
         <dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
         <dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
         <dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>

From e653756e3d855ae7c838afdb8c09b61cfb17d749 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Mon, 4 Oct 2021 18:40:07 +0200
Subject: [PATCH 075/106] applied some suggestiond from Sonar Lint

---
 .../dnetlib/dhp/oa/graph/dump/Constants.java  |  27 ++--
 .../dhp/oa/graph/dump/DumpProducts.java       |   5 +-
 .../eu/dnetlib/dhp/oa/graph/dump/MakeTar.java |  12 +-
 .../oa/graph/dump/QueryInformationSystem.java |   4 +-
 .../dhp/oa/graph/dump/ResultMapper.java       | 122 +++++++++---------
 .../dhp/oa/graph/dump/SaveCommunityMap.java   |   8 +-
 .../dhp/oa/graph/dump/SendToZenodoHDFS.java   |  23 +---
 .../graph/dump/community/CommunitySplit.java  |   8 +-
 .../community/SparkPrepareResultProject.java  |   6 +-
 .../dump/complete/CreateContextRelation.java  |   3 +-
 .../dhp/oa/graph/dump/complete/Extractor.java |  43 +++---
 .../dhp/oa/graph/dump/complete/Process.java   |   5 +-
 .../dump/complete/QueryInformationSystem.java |  18 ++-
 .../dump/complete/SparkDumpRelationJob.java   |  33 +++--
 .../complete/SparkOrganizationRelation.java   |   3 +-
 .../SparkSelectValidRelationsJob.java         |   1 -
 .../dump/exceptions/MyRuntimeException.java   |  30 +++++
 .../NoAvailableEntityTypeException.java       |  29 +++++
 .../funderresults/SparkDumpFunderResults.java |   3 -
 .../SparkResultLinkedToProject.java           |   3 -
 .../dump/PrepareResultProjectJobTest.java     |  91 +++++++------
 ...DumpOrganizationProjectDatasourceTest.java |   5 +-
 .../dhp/oa/graph/hostedbymap/TestApply.scala  |   2 +-
 .../complete/organization/organization.json   |   4 +-
 24 files changed, 274 insertions(+), 214 deletions(-)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/MyRuntimeException.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/NoAvailableEntityTypeException.java

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java
index 6dca09b632..61167639ca 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java
@@ -5,37 +5,40 @@ import java.util.Map;
 
 import com.google.common.collect.Maps;
 
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+
 public class Constants {
 
-	public static final Map<String, String> accessRightsCoarMap = Maps.newHashMap();
-	public static final Map<String, String> coarCodeLabelMap = Maps.newHashMap();
+	protected static final Map<String, String> accessRightsCoarMap = Maps.newHashMap();
+	protected static final Map<String, String> coarCodeLabelMap = Maps.newHashMap();
 
 	public static final String INFERRED = "Inferred by OpenAIRE";
+	public static final String CABF2 = "c_abf2";
 
 	public static final String HARVESTED = "Harvested";
 	public static final String DEFAULT_TRUST = "0.9";
 	public static final String USER_CLAIM = "Linked by user";
 
-	public static String COAR_ACCESS_RIGHT_SCHEMA = "http://vocabularies.coar-repositories.org/documentation/access_rights/";
+	public static final String COAR_ACCESS_RIGHT_SCHEMA = "http://vocabularies.coar-repositories.org/documentation/access_rights/";
 
-	public static String ZENODO_COMMUNITY_PREFIX = "https://zenodo.org/communities/";
+	public static final String ZENODO_COMMUNITY_PREFIX = "https://zenodo.org/communities/";
 
-	public static String RESEARCH_COMMUNITY = "Research Community";
+	public static final String RESEARCH_COMMUNITY = "Research Community";
 
-	public static String RESEARCH_INFRASTRUCTURE = "Research Infrastructure/Initiative";
+	public static final String RESEARCH_INFRASTRUCTURE = "Research Infrastructure/Initiative";
 
 	static {
-		accessRightsCoarMap.put("OPEN", "c_abf2");
+		accessRightsCoarMap.put(ModelConstants.ACCESS_RIGHT_OPEN, CABF2);
 		accessRightsCoarMap.put("RESTRICTED", "c_16ec");
-		accessRightsCoarMap.put("OPEN SOURCE", "c_abf2");
-		accessRightsCoarMap.put("CLOSED", "c_14cb");
-		accessRightsCoarMap.put("EMBARGO", "c_f1cf");
+		accessRightsCoarMap.put("OPEN SOURCE", CABF2);
+		accessRightsCoarMap.put(ModelConstants.ACCESS_RIGHT_CLOSED, "c_14cb");
+		accessRightsCoarMap.put(ModelConstants.ACCESS_RIGHT_EMBARGO, "c_f1cf");
 	}
 
 	static {
-		coarCodeLabelMap.put("c_abf2", "OPEN");
+		coarCodeLabelMap.put(CABF2, ModelConstants.ACCESS_RIGHT_OPEN);
 		coarCodeLabelMap.put("c_16ec", "RESTRICTED");
-		coarCodeLabelMap.put("c_14cb", "CLOSED");
+		coarCodeLabelMap.put("c_14cb", ModelConstants.ACCESS_RIGHT_CLOSED);
 		coarCodeLabelMap.put("c_f1cf", "EMBARGO");
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
index d09e584a33..68e1e8402f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
@@ -17,6 +17,7 @@ import org.apache.spark.sql.SaveMode;
 import org.apache.spark.sql.SparkSession;
 
 import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 import eu.dnetlib.dhp.schema.oaf.*;
 
 /**
@@ -66,7 +67,7 @@ public class DumpProducts implements Serializable {
 
 	private static <I extends OafEntity, O extends eu.dnetlib.dhp.schema.dump.oaf.Result> O execMap(I value,
 		CommunityMap communityMap,
-		String dumpType) {
+		String dumpType) throws NoAvailableEntityTypeException {
 
 		Optional<DataInfo> odInfo = Optional.ofNullable(value.getDataInfo());
 		if (odInfo.isPresent()) {
@@ -94,7 +95,7 @@ public class DumpProducts implements Serializable {
 				}
 				return null;
 			}).filter(Objects::nonNull).collect(Collectors.toList());
-			if (toDumpFor.size() == 0) {
+			if (toDumpFor.isEmpty()) {
 				return null;
 			}
 		}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/MakeTar.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/MakeTar.java
index 0d2df11fe6..b56849a3ab 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/MakeTar.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/MakeTar.java
@@ -57,16 +57,16 @@ public class MakeTar implements Serializable {
 	public static void makeTArArchive(FileSystem fileSystem, String inputPath, String outputPath, int gBperSplit)
 		throws IOException {
 
-		RemoteIterator<LocatedFileStatus> dir_iterator = fileSystem.listLocatedStatus(new Path(inputPath));
+		RemoteIterator<LocatedFileStatus> dirIterator = fileSystem.listLocatedStatus(new Path(inputPath));
 
-		while (dir_iterator.hasNext()) {
-			LocatedFileStatus fileStatus = dir_iterator.next();
+		while (dirIterator.hasNext()) {
+			LocatedFileStatus fileStatus = dirIterator.next();
 
 			Path p = fileStatus.getPath();
-			String p_string = p.toString();
-			String entity = p_string.substring(p_string.lastIndexOf("/") + 1);
+			String pathString = p.toString();
+			String entity = pathString.substring(pathString.lastIndexOf("/") + 1);
 
-			MakeTarArchive.tarMaxSize(fileSystem, p_string, outputPath + "/" + entity, entity, gBperSplit);
+			MakeTarArchive.tarMaxSize(fileSystem, pathString, outputPath + "/" + entity, entity, gBperSplit);
 		}
 
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index 4d0c59955c..b972de6e9a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -40,10 +40,10 @@ public class QueryInformationSystem {
 		"{$x//CONFIGURATION/context/@label}" +
 		"</community>";
 
-	public CommunityMap getCommunityMap(boolean singleCommunity, String community_id)
+	public CommunityMap getCommunityMap(boolean singleCommunity, String communityId)
 		throws ISLookUpException, DocumentException, SAXException {
 		if (singleCommunity)
-			return getMap(isLookUp.quickSearchProfile(XQUERY_CI.replace("%s", "'" + community_id + "'")));
+			return getMap(isLookUp.quickSearchProfile(XQUERY_CI.replace("%s", "'" + communityId + "'")));
 		return getMap(isLookUp.quickSearchProfile(XQUERY_ALL));
 
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index 988a8c7a41..0f3192c25c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -6,9 +6,8 @@ import java.util.*;
 import java.util.stream.Collectors;
 
 import org.apache.commons.lang3.StringUtils;
-import org.apache.spark.api.java.function.MapFunction;
-import org.apache.spark.sql.Encoders;
 
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.dump.oaf.*;
 import eu.dnetlib.dhp.schema.dump.oaf.AccessRight;
@@ -29,7 +28,7 @@ import eu.dnetlib.dhp.schema.oaf.*;
 public class ResultMapper implements Serializable {
 
 	public static <E extends eu.dnetlib.dhp.schema.oaf.OafEntity> Result map(
-		E in, Map<String, String> communityMap, String dumpType) {
+		E in, Map<String, String> communityMap, String dumpType) throws NoAvailableEntityTypeException {
 
 		Result out;
 		if (Constants.DUMPTYPE.COMPLETE.getType().equals(dumpType)) {
@@ -136,6 +135,8 @@ public class ResultMapper implements Serializable {
 					out.setType(ModelConstants.ORP_DEFAULT_RESULTTYPE.getClassname());
 
 					break;
+				default:
+					throw new NoAvailableEntityTypeException();
 			}
 
 			Optional<List<Measure>> mes = Optional.ofNullable(input.getMeasures());
@@ -156,17 +157,15 @@ public class ResultMapper implements Serializable {
 			// I do not map Access Right UNKNOWN or OTHER
 
 			Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> oar = Optional.ofNullable(input.getBestaccessright());
-			if (oar.isPresent()) {
-				if (Constants.accessRightsCoarMap.containsKey(oar.get().getClassid())) {
-					String code = Constants.accessRightsCoarMap.get(oar.get().getClassid());
-					out
-						.setBestaccessright(
-							AccessRight
-								.newInstance(
-									code,
-									Constants.coarCodeLabelMap.get(code),
-									Constants.COAR_ACCESS_RIGHT_SCHEMA));
-				}
+			if (oar.isPresent() && Constants.accessRightsCoarMap.containsKey(oar.get().getClassid())) {
+				String code = Constants.accessRightsCoarMap.get(oar.get().getClassid());
+				out
+					.setBestaccessright(
+						AccessRight
+							.newInstance(
+								code,
+								Constants.coarCodeLabelMap.get(code),
+								Constants.COAR_ACCESS_RIGHT_SCHEMA));
 			}
 
 			final List<String> contributorList = new ArrayList<>();
@@ -263,7 +262,7 @@ public class ResultMapper implements Serializable {
 					.stream()
 					.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("main title"))
 					.collect(Collectors.toList());
-				if (iTitle.size() > 0) {
+				if (!iTitle.isEmpty()) {
 					out.setMaintitle(iTitle.get(0).getValue());
 				}
 
@@ -272,7 +271,7 @@ public class ResultMapper implements Serializable {
 					.stream()
 					.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("subtitle"))
 					.collect(Collectors.toList());
-				if (iTitle.size() > 0) {
+				if (!iTitle.isEmpty()) {
 					out.setSubtitle(iTitle.get(0).getValue());
 				}
 
@@ -301,9 +300,8 @@ public class ResultMapper implements Serializable {
 
 			Optional
 				.ofNullable(input.getSource())
-				.ifPresent(value -> out.setSource(value.stream().map(s -> s.getValue()).collect(Collectors.toList())));
-			// value.stream().forEach(s -> sourceList.add(s.getValue())));
-			// out.setSource(input.getSource().stream().map(s -> s.getValue()).collect(Collectors.toList()));
+				.ifPresent(value -> out.setSource(value.stream().map(Field::getValue).collect(Collectors.toList())));
+
 			List<Subject> subjectList = new ArrayList<>();
 			Optional
 				.ofNullable(input.getSubject())
@@ -334,14 +332,14 @@ public class ResultMapper implements Serializable {
 					value -> value
 						.stream()
 						.map(c -> {
-							String community_id = c.getId();
-							if (community_id.indexOf("::") > 0) {
-								community_id = community_id.substring(0, community_id.indexOf("::"));
+							String communityId = c.getId();
+							if (communityId.contains("::")) {
+								communityId = communityId.substring(0, communityId.indexOf("::"));
 							}
-							if (communities.contains(community_id)) {
+							if (communities.contains(communityId)) {
 								Context context = new Context();
-								context.setCode(community_id);
-								context.setLabel(communityMap.get(community_id));
+								context.setCode(communityId);
+								context.setLabel(communityMap.get(communityId));
 								Optional<List<DataInfo>> dataInfo = Optional.ofNullable(c.getDataInfo());
 								if (dataInfo.isPresent()) {
 									List<Provenance> provenance = new ArrayList<>();
@@ -361,7 +359,11 @@ public class ResultMapper implements Serializable {
 												.filter(Objects::nonNull)
 												.collect(Collectors.toSet()));
 
-									context.setProvenance(getUniqueProvenance(provenance));
+									try {
+										context.setProvenance(getUniqueProvenance(provenance));
+									} catch (NoAvailableEntityTypeException e) {
+										e.printStackTrace();
+									}
 								}
 								return context;
 							}
@@ -371,7 +373,7 @@ public class ResultMapper implements Serializable {
 						.collect(Collectors.toList()))
 				.orElse(new ArrayList<>());
 
-			if (contextList.size() > 0) {
+			if (!contextList.isEmpty()) {
 				Set<Integer> hashValue = new HashSet<>();
 				List<Context> remainigContext = new ArrayList<>();
 				contextList.forEach(c -> {
@@ -417,35 +419,34 @@ public class ResultMapper implements Serializable {
 	private static <I extends Instance> void setCommonValue(eu.dnetlib.dhp.schema.oaf.Instance i, I instance) {
 		Optional<eu.dnetlib.dhp.schema.oaf.AccessRight> opAr = Optional.ofNullable(i.getAccessright());
 
-		if (opAr.isPresent()) {
-			if (Constants.accessRightsCoarMap.containsKey(opAr.get().getClassid())) {
-				String code = Constants.accessRightsCoarMap.get(opAr.get().getClassid());
+		if (opAr.isPresent() && Constants.accessRightsCoarMap.containsKey(opAr.get().getClassid())) {
+			String code = Constants.accessRightsCoarMap.get(opAr.get().getClassid());
 
-				instance
-					.setAccessright(
-						AccessRight
-							.newInstance(
-								code,
-								Constants.coarCodeLabelMap.get(code),
-								Constants.COAR_ACCESS_RIGHT_SCHEMA));
-				if (opAr.get().getOpenAccessRoute() != null) {
-					switch (opAr.get().getOpenAccessRoute()) {
-						case hybrid:
-							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.hybrid);
-							break;
-						case gold:
-							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.gold);
-							break;
-						case green:
-							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.green);
-							break;
-						case bronze:
-							instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.bronze);
-							break;
+			instance
+				.setAccessright(
+					AccessRight
+						.newInstance(
+							code,
+							Constants.coarCodeLabelMap.get(code),
+							Constants.COAR_ACCESS_RIGHT_SCHEMA));
+			if (opAr.get().getOpenAccessRoute() != null) {
+				switch (opAr.get().getOpenAccessRoute()) {
+					case hybrid:
+						instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.hybrid);
+						break;
+					case gold:
+						instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.gold);
+						break;
+					case green:
+						instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.green);
+						break;
+					case bronze:
+						instance.getAccessright().setOpenAccessRoute(OpenAccessRoute.bronze);
+						break;
 
-					}
 				}
 			}
+
 		}
 
 		Optional
@@ -498,7 +499,8 @@ public class ResultMapper implements Serializable {
 
 	}
 
-	private static List<Provenance> getUniqueProvenance(List<Provenance> provenance) {
+	private static List<Provenance> getUniqueProvenance(List<Provenance> provenance)
+		throws NoAvailableEntityTypeException {
 		Provenance iProv = new Provenance();
 
 		Provenance hProv = new Provenance();
@@ -520,6 +522,8 @@ public class ResultMapper implements Serializable {
 				case Constants.USER_CLAIM:
 					lProv = getHighestTrust(lProv, p);
 					break;
+				default:
+					throw new NoAvailableEntityTypeException();
 			}
 
 		}
@@ -599,19 +603,19 @@ public class ResultMapper implements Serializable {
 	}
 
 	private static Pid getOrcid(List<StructuredProperty> p) {
-		List<StructuredProperty> pid_list = p.stream().map(pid -> {
+		List<StructuredProperty> pidList = p.stream().map(pid -> {
 			if (pid.getQualifier().getClassid().equals(ModelConstants.ORCID) ||
 				(pid.getQualifier().getClassid().equals(ModelConstants.ORCID_PENDING))) {
 				return pid;
 			}
 			return null;
-		}).filter(pid -> pid != null).collect(Collectors.toList());
+		}).filter(Objects::nonNull).collect(Collectors.toList());
 
-		if (pid_list.size() == 1) {
-			return getAuthorPid(pid_list.get(0));
+		if (pidList.size() == 1) {
+			return getAuthorPid(pidList.get(0));
 		}
 
-		List<StructuredProperty> orcid = pid_list
+		List<StructuredProperty> orcid = pidList
 			.stream()
 			.filter(
 				ap -> ap
@@ -622,7 +626,7 @@ public class ResultMapper implements Serializable {
 		if (orcid.size() == 1) {
 			return getAuthorPid(orcid.get(0));
 		}
-		orcid = pid_list
+		orcid = pidList
 			.stream()
 			.filter(
 				ap -> ap
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
index 9713247446..1eff998920 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
@@ -31,9 +31,9 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 public class SaveCommunityMap implements Serializable {
 
 	private static final Logger log = LoggerFactory.getLogger(SaveCommunityMap.class);
-	private final QueryInformationSystem queryInformationSystem;
+	private final transient QueryInformationSystem queryInformationSystem;
 
-	private final BufferedWriter writer;
+	private final transient BufferedWriter writer;
 
 	public SaveCommunityMap(String hdfsPath, String hdfsNameNode, String isLookUpUrl) throws IOException {
 		final Configuration conf = new Configuration();
@@ -84,12 +84,12 @@ public class SaveCommunityMap implements Serializable {
 
 	}
 
-	private void saveCommunityMap(boolean singleCommunity, String community_id)
+	private void saveCommunityMap(boolean singleCommunity, String communityId)
 		throws ISLookUpException, IOException, DocumentException, SAXException {
 		writer
 			.write(
 				Utils.OBJECT_MAPPER
-					.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, community_id)));
+					.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, communityId)));
 	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
index 09e3015725..a19a3a5b60 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SendToZenodoHDFS.java
@@ -5,15 +5,13 @@ import java.io.Serializable;
 import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
 import org.apache.hadoop.conf.Configuration;
 import org.apache.hadoop.fs.*;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.common.api.MissingConceptDoiException;
 import eu.dnetlib.dhp.common.api.ZenodoAPIClient;
-import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 
 public class SendToZenodoHDFS implements Serializable {
 
@@ -21,8 +19,6 @@ public class SendToZenodoHDFS implements Serializable {
 	private static final String VERSION = "version"; // to be used to upload a new version of a published deposition
 	private static final String UPDATE = "update"; // to upload content to an open deposition not published
 
-	private static final Log log = LogFactory.getLog(SendToZenodoHDFS.class);
-
 	public static void main(final String[] args) throws Exception, MissingConceptDoiException {
 		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
 			IOUtils
@@ -48,15 +44,12 @@ public class SendToZenodoHDFS implements Serializable {
 			.orElse(false);
 
 		final String depositionId = Optional.ofNullable(parser.get("depositionId")).orElse(null);
-		// final String communityMapPath = parser.get("communityMapPath");
 
 		Configuration conf = new Configuration();
 		conf.set("fs.defaultFS", hdfsNameNode);
 
 		FileSystem fileSystem = FileSystem.get(conf);
 
-		// CommunityMap communityMap = Utils.readCommunityMap(fileSystem, communityMapPath);
-
 		RemoteIterator<LocatedFileStatus> fileStatusListIterator = fileSystem
 			.listFiles(
 				new Path(hdfsPath), true);
@@ -77,19 +70,17 @@ public class SendToZenodoHDFS implements Serializable {
 				}
 				zenodoApiClient.uploadOpenDeposition(depositionId);
 				break;
+			default:
+				throw new NoAvailableEntityTypeException();
 		}
 
 		while (fileStatusListIterator.hasNext()) {
 			LocatedFileStatus fileStatus = fileStatusListIterator.next();
 
 			Path p = fileStatus.getPath();
-			String p_string = p.toString();
-			if (!p_string.endsWith("_SUCCESS")) {
-				String name = p_string.substring(p_string.lastIndexOf("/") + 1);
-//				log.info("Sending information for community: " + name);
-//				if (communityMap.containsKey(name.substring(0, name.lastIndexOf(".")))) {
-//					name = communityMap.get(name.substring(0, name.lastIndexOf("."))).replace(" ", "_") + ".tar";
-//				}
+			String pString = p.toString();
+			if (!pString.endsWith("_SUCCESS")) {
+				String name = pString.substring(pString.lastIndexOf("/") + 1);
 
 				FSDataInputStream inputStream = fileSystem.open(p);
 				zenodoApiClient.uploadIS(inputStream, name, fileStatus.getLen());
@@ -101,7 +92,7 @@ public class SendToZenodoHDFS implements Serializable {
 			zenodoApiClient.sendMretadata(metadata);
 		}
 
-		if (publish) {
+		if (Boolean.TRUE.equals(publish)) {
 			zenodoApiClient.publish();
 		}
 	}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
index 6abca22559..ee6341f843 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/CommunitySplit.java
@@ -5,7 +5,6 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
 
 import java.io.Serializable;
 import java.util.Optional;
-import java.util.Set;
 import java.util.stream.Collectors;
 
 import org.apache.spark.SparkConf;
@@ -16,6 +15,7 @@ import org.apache.spark.sql.SparkSession;
 
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
+import eu.dnetlib.dhp.schema.dump.oaf.community.Context;
 
 /**
  * This class splits the dumped results according to the research community - research initiative/infrastructure they
@@ -56,10 +56,10 @@ public class CommunitySplit implements Serializable {
 	}
 
 	private static void printResult(String c, Dataset<CommunityResult> result, String outputPath) {
-		Dataset<CommunityResult> community_products = result
+		Dataset<CommunityResult> communityProducts = result
 			.filter((FilterFunction<CommunityResult>) r -> containsCommunity(r, c));
 
-		community_products
+		communityProducts
 			.write()
 			.option("compression", "gzip")
 			.mode(SaveMode.Overwrite)
@@ -72,7 +72,7 @@ public class CommunitySplit implements Serializable {
 			return r
 				.getContext()
 				.stream()
-				.map(con -> con.getCode())
+				.map(Context::getCode)
 				.collect(Collectors.toList())
 				.contains(c);
 		}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
index 3508e41262..87ac20948a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/community/SparkPrepareResultProject.java
@@ -161,7 +161,7 @@ public class SparkPrepareResultProject implements Serializable {
 			provenance.setTrust(di.get().getTrust());
 			p.setProvenance(provenance);
 		}
-		if (relation.getValidated()) {
+		if (Boolean.TRUE.equals(relation.getValidated())) {
 			p.setValidated(Validated.newInstance(relation.getValidated(), relation.getValidationDate()));
 		}
 		return p;
@@ -179,8 +179,8 @@ public class SparkPrepareResultProject implements Serializable {
 			f.setName(((Node) (doc.selectNodes("//funder/name").get(0))).getText());
 			f.setJurisdiction(((Node) (doc.selectNodes("//funder/jurisdiction").get(0))).getText());
 			for (Object o : doc.selectNodes("//funding_level_0")) {
-				List node = ((Node) o).selectNodes("./name");
-				f.setFundingStream(((Node) node.get(0)).getText());
+				List<Node> node = ((Node) o).selectNodes("./name");
+				f.setFundingStream((node.get(0)).getText());
 			}
 
 			return f;
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
index 0c8f5dba4e..a468e334da 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateContextRelation.java
@@ -22,6 +22,7 @@ import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.MyRuntimeException;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.dump.oaf.graph.*;
 import eu.dnetlib.dhp.schema.oaf.Datasource;
@@ -120,7 +121,7 @@ public class CreateContextRelation implements Serializable {
 			writer.write(Utils.OBJECT_MAPPER.writeValueAsString(r));
 			writer.newLine();
 		} catch (final Exception e) {
-			throw new RuntimeException(e);
+			throw new MyRuntimeException(e);
 		}
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
index 7e8ddfaf8c..3e47ee6648 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Extractor.java
@@ -62,22 +62,7 @@ public class Extractor implements Serializable {
 			.readPath(spark, inputPath, inputClazz)
 			.flatMap((FlatMapFunction<R, Relation>) value -> {
 				List<Relation> relationList = new ArrayList<>();
-				Optional
-					.ofNullable(value.getInstance())
-					.ifPresent(inst -> inst.forEach(instance -> {
-						Optional
-							.ofNullable(instance.getCollectedfrom())
-							.ifPresent(
-								cf -> getRelatioPair(
-									value, relationList, cf,
-									ModelConstants.IS_PROVIDED_BY, ModelConstants.PROVIDES, hashCodes));
-						Optional
-							.ofNullable(instance.getHostedby())
-							.ifPresent(
-								hb -> getRelatioPair(
-									value, relationList, hb,
-									Constants.IS_HOSTED_BY, Constants.HOSTS, hashCodes));
-					}));
+				extractRelationsFromInstance(hashCodes, value, relationList);
 				Set<String> communities = communityMap.keySet();
 				Optional
 					.ofNullable(value.getContext())
@@ -136,8 +121,28 @@ public class Extractor implements Serializable {
 
 	}
 
+	private <R extends Result> void extractRelationsFromInstance(Set<Integer> hashCodes, R value,
+		List<Relation> relationList) {
+		Optional
+			.ofNullable(value.getInstance())
+			.ifPresent(inst -> inst.forEach(instance -> {
+				Optional
+					.ofNullable(instance.getCollectedfrom())
+					.ifPresent(
+						cf -> getRelatioPair(
+							value, relationList, cf,
+							ModelConstants.IS_PROVIDED_BY, ModelConstants.PROVIDES, hashCodes));
+				Optional
+					.ofNullable(instance.getHostedby())
+					.ifPresent(
+						hb -> getRelatioPair(
+							value, relationList, hb,
+							Constants.IS_HOSTED_BY, Constants.HOSTS, hashCodes));
+			}));
+	}
+
 	private static <R extends Result> void getRelatioPair(R value, List<Relation> relationList, KeyValue cf,
-		String result_dtasource, String datasource_result,
+		String resultDatasource, String datasourceResult,
 		Set<Integer> hashCodes) {
 		Provenance provenance = Optional
 			.ofNullable(cf.getDataInfo())
@@ -162,7 +167,7 @@ public class Extractor implements Serializable {
 		Relation r = getRelation(
 			value.getId(),
 			cf.getKey(), Constants.RESULT_ENTITY, Constants.DATASOURCE_ENTITY,
-			result_dtasource, ModelConstants.PROVISION,
+			resultDatasource, ModelConstants.PROVISION,
 			provenance);
 		if (!hashCodes.contains(r.hashCode())) {
 			relationList
@@ -173,7 +178,7 @@ public class Extractor implements Serializable {
 		r = getRelation(
 			cf.getKey(), value.getId(),
 			Constants.DATASOURCE_ENTITY, Constants.RESULT_ENTITY,
-			datasource_result, ModelConstants.PROVISION,
+			datasourceResult, ModelConstants.PROVISION,
 			provenance);
 
 		if (!hashCodes.contains(r.hashCode())) {
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
index b0b8b8acdc..e1cb0e753f 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/Process.java
@@ -9,6 +9,7 @@ import org.apache.commons.lang3.StringUtils;
 
 import eu.dnetlib.dhp.oa.graph.dump.Constants;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.MyRuntimeException;
 import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.dump.oaf.Provenance;
@@ -43,7 +44,7 @@ public class Process implements Serializable {
 			return (R) ri;
 
 		} catch (final Exception e) {
-			throw new RuntimeException(e);
+			throw new MyRuntimeException(e);
 		}
 	}
 
@@ -91,7 +92,7 @@ public class Process implements Serializable {
 			return relationList;
 
 		} catch (final Exception e) {
-			throw new RuntimeException(e);
+			throw new MyRuntimeException(e);
 		}
 	}
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
index 88c92da53d..fcc4bf39ce 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/QueryInformationSystem.java
@@ -13,7 +13,6 @@ import org.dom4j.io.SAXReader;
 import org.jetbrains.annotations.NotNull;
 import org.xml.sax.SAXException;
 
-import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.utils.DHPUtils;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
@@ -94,9 +93,9 @@ public class QueryInformationSystem {
 				Element root = doc.getRootElement();
 				cinfo.setId(root.attributeValue("id"));
 
-				Iterator it = root.elementIterator();
+				Iterator<Element> it = root.elementIterator();
 				while (it.hasNext()) {
-					Element el = (Element) it.next();
+					Element el = it.next();
 					if (el.getName().equals("category")) {
 						String categoryId = el.attributeValue("id");
 						categoryId = categoryId.substring(categoryId.lastIndexOf("::") + 2);
@@ -143,7 +142,7 @@ public class QueryInformationSystem {
 		if (!prefix.equals(ModelSupport.entityIdPrefix.get("project"))) {
 			return null;
 		}
-		String funder = null;
+		String funder = "";
 		String grantId = null;
 		String funding = null;
 		for (Object node : el.selectNodes(".//param")) {
@@ -158,9 +157,12 @@ public class QueryInformationSystem {
 				case "CD_PROJECT_NUMBER":
 					grantId = n.getText();
 					break;
+				default:
+					break;
 			}
 		}
 		String nsp = null;
+
 		switch (funder.toLowerCase()) {
 			case "ec":
 				if (funding == null) {
@@ -179,10 +181,12 @@ public class QueryInformationSystem {
 				nsp = "dfgf________::";
 				break;
 			default:
-				nsp = funder.toLowerCase();
+				StringBuilder bld = new StringBuilder();
+				bld.append(funder.toLowerCase());
 				for (int i = funder.length(); i < 12; i++)
-					nsp += "_";
-				nsp += "::";
+					bld.append("_");
+				bld.append("::");
+				nsp = bld.toString();
 		}
 
 		return prefix + "|" + nsp + DHPUtils.md5(grantId);
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
index ab7e7e595d..ddfd6592f9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkDumpRelationJob.java
@@ -71,22 +71,22 @@ public class SparkDumpRelationJob implements Serializable {
 		Dataset<Relation> relations = Utils.readPath(spark, inputPath, Relation.class);
 		relations
 			.map((MapFunction<Relation, eu.dnetlib.dhp.schema.dump.oaf.graph.Relation>) relation -> {
-				eu.dnetlib.dhp.schema.dump.oaf.graph.Relation rel_new = new eu.dnetlib.dhp.schema.dump.oaf.graph.Relation();
-				rel_new
+				eu.dnetlib.dhp.schema.dump.oaf.graph.Relation relNew = new eu.dnetlib.dhp.schema.dump.oaf.graph.Relation();
+				relNew
 					.setSource(
 						Node
 							.newInstance(
 								relation.getSource(),
 								ModelSupport.idPrefixEntity.get(relation.getSource().substring(0, 2))));
 
-				rel_new
+				relNew
 					.setTarget(
 						Node
 							.newInstance(
 								relation.getTarget(),
 								ModelSupport.idPrefixEntity.get(relation.getTarget().substring(0, 2))));
 
-				rel_new
+				relNew
 					.setReltype(
 						RelType
 							.newInstance(
@@ -96,23 +96,22 @@ public class SparkDumpRelationJob implements Serializable {
 				Optional<DataInfo> odInfo = Optional.ofNullable(relation.getDataInfo());
 				if (odInfo.isPresent()) {
 					DataInfo dInfo = odInfo.get();
-					if (Optional.ofNullable(dInfo.getProvenanceaction()).isPresent()) {
-						if (Optional.ofNullable(dInfo.getProvenanceaction().getClassname()).isPresent()) {
-							rel_new
-								.setProvenance(
-									Provenance
-										.newInstance(
-											dInfo.getProvenanceaction().getClassname(),
-											dInfo.getTrust()));
-						}
+					if (Optional.ofNullable(dInfo.getProvenanceaction()).isPresent() &&
+						Optional.ofNullable(dInfo.getProvenanceaction().getClassname()).isPresent()) {
+						relNew
+							.setProvenance(
+								Provenance
+									.newInstance(
+										dInfo.getProvenanceaction().getClassname(),
+										dInfo.getTrust()));
 					}
 				}
-				if (relation.getValidated()) {
-					rel_new.setValidated(relation.getValidated());
-					rel_new.setValidationDate(relation.getValidationDate());
+				if (Boolean.TRUE.equals(relation.getValidated())) {
+					relNew.setValidated(relation.getValidated());
+					relNew.setValidationDate(relation.getValidationDate());
 				}
 
-				return rel_new;
+				return relNew;
 
 			}, Encoders.bean(eu.dnetlib.dhp.schema.dump.oaf.graph.Relation.class))
 			.write()
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkOrganizationRelation.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkOrganizationRelation.java
index 4365e861fe..f9d2123e2c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkOrganizationRelation.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkOrganizationRelation.java
@@ -58,7 +58,8 @@ public class SparkOrganizationRelation implements Serializable {
 
 		final OrganizationMap organizationMap = new Gson()
 			.fromJson(parser.get("organizationCommunityMap"), OrganizationMap.class);
-		log.info("organization map : {}", new Gson().toJson(organizationMap));
+		final String serializedOrganizationMap = new Gson().toJson(organizationMap);
+		log.info("organization map : {}", serializedOrganizationMap);
 
 		final String communityMapPath = parser.get("communityMapPath");
 		log.info("communityMapPath: {}", communityMapPath);
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
index e729e13dfa..20f3fc4a7e 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/complete/SparkSelectValidRelationsJob.java
@@ -131,7 +131,6 @@ public class SparkSelectValidRelationsJob implements Serializable {
 			.option("compression", "gzip")
 			.mode(SaveMode.Overwrite)
 			.json(outputPath);
-		;
 
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/MyRuntimeException.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/MyRuntimeException.java
new file mode 100644
index 0000000000..e325c43347
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/MyRuntimeException.java
@@ -0,0 +1,30 @@
+
+package eu.dnetlib.dhp.oa.graph.dump.exceptions;
+
+public class MyRuntimeException extends RuntimeException {
+
+	public MyRuntimeException() {
+		super();
+	}
+
+	public MyRuntimeException(
+		final String message,
+		final Throwable cause,
+		final boolean enableSuppression,
+		final boolean writableStackTrace) {
+		super(message, cause, enableSuppression, writableStackTrace);
+	}
+
+	public MyRuntimeException(final String message, final Throwable cause) {
+		super(message, cause);
+	}
+
+	public MyRuntimeException(final String message) {
+		super(message);
+	}
+
+	public MyRuntimeException(final Throwable cause) {
+		super(cause);
+	}
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/NoAvailableEntityTypeException.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/NoAvailableEntityTypeException.java
new file mode 100644
index 0000000000..f3fbf740a3
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/exceptions/NoAvailableEntityTypeException.java
@@ -0,0 +1,29 @@
+
+package eu.dnetlib.dhp.oa.graph.dump.exceptions;
+
+public class NoAvailableEntityTypeException extends Exception {
+	public NoAvailableEntityTypeException() {
+		super();
+	}
+
+	public NoAvailableEntityTypeException(
+		final String message,
+		final Throwable cause,
+		final boolean enableSuppression,
+		final boolean writableStackTrace) {
+		super(message, cause, enableSuppression, writableStackTrace);
+	}
+
+	public NoAvailableEntityTypeException(final String message, final Throwable cause) {
+		super(message, cause);
+	}
+
+	public NoAvailableEntityTypeException(final String message) {
+		super(message);
+	}
+
+	public NoAvailableEntityTypeException(final Throwable cause) {
+		super(cause);
+	}
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
index 9cddba3c54..6aed9d7a8c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkDumpFunderResults.java
@@ -10,7 +10,6 @@ import java.util.Optional;
 
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
-import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.sql.*;
 import org.slf4j.Logger;
@@ -18,10 +17,8 @@ import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
-import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.dump.oaf.community.CommunityResult;
 import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
-import eu.dnetlib.dhp.schema.oaf.Relation;
 
 /**
  * Splits the dumped results by funder and stores them in a folder named as the funder nsp (for all the funders, but the EC
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
index 156ae6d633..d89b9e86dd 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/funderresults/SparkResultLinkedToProject.java
@@ -10,7 +10,6 @@ import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.api.java.function.MapGroupsFunction;
-import org.apache.spark.sql.*;
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.SaveMode;
@@ -19,13 +18,11 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.oa.graph.dump.Constants;
 import eu.dnetlib.dhp.oa.graph.dump.Utils;
 import eu.dnetlib.dhp.schema.common.ModelConstants;
 import eu.dnetlib.dhp.schema.oaf.Project;
 import eu.dnetlib.dhp.schema.oaf.Relation;
 import eu.dnetlib.dhp.schema.oaf.Result;
-import scala.Tuple2;
 
 /**
  * Selects the results linked to projects. Only for these results the dump will be performed.
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
index a17861ad71..86d2f93c9c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/PrepareResultProjectJobTest.java
@@ -8,17 +8,14 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 
 import org.apache.commons.io.FileUtils;
-
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
 import org.apache.spark.api.java.JavaSparkContext;
-
 import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.Row;
 import org.apache.spark.sql.SparkSession;
 import org.junit.jupiter.api.AfterAll;
-
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Test;
 import org.slf4j.Logger;
@@ -248,14 +245,14 @@ public class PrepareResultProjectJobTest {
 		org.apache.spark.sql.Dataset<ResultProject> verificationDataset = spark
 			.createDataset(tmp.rdd(), Encoders.bean(ResultProject.class));
 
-		assertEquals(2, verificationDataset.count() );
+		assertEquals(2, verificationDataset.count());
 
 		assertEquals(
-				1,
-				verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
+			1,
+			verificationDataset.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'").count());
 		assertEquals(
-				1,
-				verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
+			1,
+			verificationDataset.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'").count());
 
 		verificationDataset.createOrReplaceTempView("dataset");
 
@@ -269,59 +266,59 @@ public class PrepareResultProjectJobTest {
 		assertEquals(3, resultExplodedProvenance.count());
 		assertEquals(3, resultExplodedProvenance.filter("validatedByFunder = true").count());
 		assertEquals(
-				2,
-				resultExplodedProvenance
-					.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
-					.count());
+			2,
+			resultExplodedProvenance
+				.filter("resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb'")
+				.count());
 
 		assertEquals(
-				1,
-				resultExplodedProvenance
-					.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'")
-					.count());
+			1,
+			resultExplodedProvenance
+				.filter("resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80'")
+				.count());
 
 		assertEquals(
-				2,
-				resultExplodedProvenance
-					.filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'")
-					.count());
+			2,
+			resultExplodedProvenance
+				.filter("project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6'")
+				.count());
 
 		assertEquals(
-				1,
-				resultExplodedProvenance
-					.filter(
-						"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
-							"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
-							"and validatedByFunder = true " +
-							"and validationDate = '2021-08-06'")
-					.count());
+			1,
+			resultExplodedProvenance
+				.filter(
+					"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+						"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+						"and validatedByFunder = true " +
+						"and validationDate = '2021-08-06'")
+				.count());
 
 		assertEquals(
-				1,
-				resultExplodedProvenance
-					.filter(
-						"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
-							"and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' " +
-							"and validatedByFunder = true and validationDate = '2021-08-04'")
-					.count());
+			1,
+			resultExplodedProvenance
+				.filter(
+					"project = '40|aka_________::0f7d119de1f656b5763a16acf876fed6' " +
+						"and resultId = '50|dedup_wf_001::51b88f272ba9c3bb181af64e70255a80' " +
+						"and validatedByFunder = true and validationDate = '2021-08-04'")
+				.count());
 
 		assertEquals(
-				1,
-				resultExplodedProvenance
-					.filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'")
-					.count());
+			1,
+			resultExplodedProvenance
+				.filter("project = '40|aka_________::03376222b28a3aebf2730ac514818d04'")
+				.count());
 
 		assertEquals(
-				1,
-				resultExplodedProvenance
-					.filter(
-						"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' " +
-							"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
-							"and validatedByFunder = true and validationDate = '2021-08-05'")
-					.count());
+			1,
+			resultExplodedProvenance
+				.filter(
+					"project = '40|aka_________::03376222b28a3aebf2730ac514818d04' " +
+						"and resultId = '50|dedup_wf_001::e4805d005bfab0cd39a1642cbf477fdb' " +
+						"and validatedByFunder = true and validationDate = '2021-08-05'")
+				.count());
 
 		assertEquals(
-				3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
+			3, resultExplodedProvenance.filter("provenance = 'sysimport:crosswalk:entityregistry'").count());
 
 	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
index 89ecdfb2b4..051141e183 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
@@ -6,6 +6,7 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.HashMap;
 
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
@@ -98,7 +99,7 @@ public class DumpOrganizationProjectDatasourceTest {
 	}
 
 	@Test
-	public void dumpProjectTest() {
+	public void dumpProjectTest() throws NoAvailableEntityTypeException {
 
 		final String sourcePath = getClass()
 			.getResource("/eu/dnetlib/dhp/oa/graph/dump/complete/project")
@@ -127,7 +128,7 @@ public class DumpOrganizationProjectDatasourceTest {
 	}
 
 	@Test
-	public void dumpDatasourceTest() {
+	public void dumpDatasourceTest() throws NoAvailableEntityTypeException {
 		final String sourcePath = getClass()
 			.getResource("/eu/dnetlib/dhp/oa/graph/dump/complete/datasource")
 			.getPath();
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/hostedbymap/TestApply.scala b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/hostedbymap/TestApply.scala
index 1bdcb60aaf..4613d56369 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/hostedbymap/TestApply.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/hostedbymap/TestApply.scala
@@ -54,7 +54,7 @@ class TestApply extends java.io.Serializable{
         assertTrue(pa.getInstance().get(0).getHostedby.getValue.equals("Academic Therapy"))
         assertTrue(pa.getInstance().get(0).getAccessright.getClassid.equals("OPEN"))
         assertTrue(pa.getInstance().get(0).getAccessright.getClassname.equals("Open Access"))
-        assertTrue(pa.getInstance().get(0).getAccessright.getOpenAccessRoute.equals(OpenAccessRoute.hybrid))
+        assertTrue(pa.getInstance().get(0).getAccessright.getOpenAccessRoute.equals(OpenAccessRoute.gold))
         assertTrue(pa.getBestaccessright.getClassid.equals("OPEN"))
         assertTrue(pa.getBestaccessright.getClassname.equals("Open Access"))
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/organization/organization.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/organization/organization.json
index d172419bf7..e141af7872 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/organization/organization.json
+++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/complete/organization/organization.json
@@ -1,6 +1,5 @@
 {"alternativeNames":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"한국초등도덕교육학회"}],"collectedfrom":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::ff4a008470319a22d9cf3d14af485977","value":"GRID - Global Research Identifier Database"}],"country":{"classid":"KR","classname":"Korea (Republic of)","schemeid":"dnet:countries","schemename":"dnet:countries"},"dataInfo":{"deletedbyinference":true,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.91"},"dateofcollection":"","dateoftransformation":"","ecenterprise":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"echighereducation":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecinternationalorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecinternationalorganizationeurinterests":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"eclegalbody":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"eclegalperson":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecnonprofit":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecnutscode":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecresearchorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecsmevalidated":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"extraInfo":[],"id":"20|grid________::bd5cbea5dc434b8fd811a880cb9d4a05","lastupdatetimestamp":1566902414749,"legalname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korean Elementary Moral Education Society"},"legalshortname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Korean Elementary Moral Education Society"},"logourl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"originalId":[],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"grid","classname":"grid","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"grid.496778.3"}],"websiteurl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"http://www.ethics.or.kr/"}}
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+{"alternativeNames":[],"collectedfrom":[{"key":"10|openaire____::a55eb91348674d853191f4f4fd73d078","value":"CORDA - COmmon Research DAta Warehouse - Horizon 2020"}],"country":{"classid":"NO","classname":"Norway","schemeid":"dnet:countries","schemename":"dnet:countries"},"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"dateofcollection":"2018-03-12","dateoftransformation":"2020-06-20","ecenterprise":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"echighereducation":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecinternationalorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecinternationalorganizationeurinterests":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"eclegalbody":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"eclegalperson":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"true"},"ecnonprofit":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecnutscode":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecresearchorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"false"},"ecsmevalidated":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"true"},"extraInfo":[],"id":"20|corda__h2020::9078c2ab5222c914200a52d00ffd5671","lastupdatetimestamp":1594398578323,"legalname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:entityregistry","classname":"Harvested","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.810000002384185791"},"value":"ERVIK & SAEVIK AS"},"originalId":["corda__h2020::920030257"],"pid":[]}
+{"alternativeNames":[],"collectedfrom":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"key":"10|openaire____::ff4a008470319a22d9cf3d14af485977","value":"GRID - Global Research Identifier Database"}],"country":{"classid":"CA","classname":"Canada","schemeid":"dnet:countries","schemename":"dnet:countries"},"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"UNKNOWN","classname":"UNKNOWN","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.91"},"dateofcollection":"","dateoftransformation":"","ecenterprise":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"echighereducation":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecinternationalorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecinternationalorganizationeurinterests":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"eclegalbody":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"eclegalperson":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecnonprofit":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecnutscode":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecresearchorganization":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"ecsmevalidated":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"extraInfo":[],"id":"20|grid________::b91f67a34df55a0aa1aabdcb3700f413","lastupdatetimestamp":1566902407153,"legalname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"AHS - Stollery Children's Hospital"},"legalshortname":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"Stollery Children's Hospital"},"logourl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":""},"originalId":[],"pid":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"qualifier":{"classid":"grid","classname":"grid","schemeid":"dnet:pid_types","schemename":"dnet:pid_types"},"value":"grid.416656.6"}],"websiteurl":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"","classname":"","schemeid":"","schemename":""},"trust":""},"value":"https://www.stollerykids.com/"}}
\ No newline at end of file

From 83f51f1812212cd7d5587cf6e5597945ae619b5c Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 12 Oct 2021 09:14:43 +0200
Subject: [PATCH 076/106] refactoring

---
 .../dump/complete/DumpOrganizationProjectDatasourceTest.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
index 051141e183..80b5fd89e4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/DumpOrganizationProjectDatasourceTest.java
@@ -6,7 +6,6 @@ import java.nio.file.Files;
 import java.nio.file.Path;
 import java.util.HashMap;
 
-import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 import org.apache.commons.io.FileUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaRDD;
@@ -23,6 +22,7 @@ import org.slf4j.LoggerFactory;
 
 import com.fasterxml.jackson.databind.ObjectMapper;
 
+import eu.dnetlib.dhp.oa.graph.dump.exceptions.NoAvailableEntityTypeException;
 import eu.dnetlib.dhp.schema.oaf.Datasource;
 import eu.dnetlib.dhp.schema.oaf.Organization;
 import eu.dnetlib.dhp.schema.oaf.Project;

From 63933808d4e89b683f06036c78170e4be37d36a2 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Wed, 13 Oct 2021 11:28:28 +0200
Subject: [PATCH 077/106] added fix for mixing result types, added
 configuration default to funder subworkflow

---
 .../dhp/oa/graph/dump/DumpProducts.java       |   3 +-
 .../oa/graph/dump/QueryInformationSystem.java |   2 +-
 .../dhp/oa/graph/dump/ResultMapper.java       | 682 +++++++++---------
 .../dhp/oa/graph/dump/SaveCommunityMap.java   |   8 +-
 .../oa/graph/dump/input_cm_parameters.json    |   2 +-
 .../funder/oozie_app/config-default.xml       |  30 +
 6 files changed, 389 insertions(+), 338 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
index 68e1e8402f..a714cea207 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/DumpProducts.java
@@ -11,6 +11,7 @@ import java.util.Set;
 import java.util.stream.Collectors;
 
 import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.FilterFunction;
 import org.apache.spark.api.java.function.MapFunction;
 import org.apache.spark.sql.Encoders;
 import org.apache.spark.sql.SaveMode;
@@ -57,7 +58,7 @@ public class DumpProducts implements Serializable {
 		Utils
 			.readPath(spark, inputPath, inputClazz)
 			.map((MapFunction<I, O>) value -> execMap(value, communityMap, dumpType), Encoders.bean(outputClazz))
-			.filter(Objects::nonNull)
+			.filter((FilterFunction<O>) value -> value != null)
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index b972de6e9a..ab5434ed0c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -62,7 +62,7 @@ public class QueryInformationSystem {
 		for (String xml : communityMap) {
 			final Document doc;
 			final SAXReader reader = new SAXReader();
-			reader.setFeature("http://apache.org/xml/features/disallow-doctype-decl", true);
+			// reader.setFeature("http://apache.org/xml/features/disallow-doctype-decl", true);
 			doc = reader.read(new StringReader(xml));
 			Element root = doc.getRootElement();
 			map.put(root.attribute("id").getValue(), root.attribute("label").getValue());
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
index 0f3192c25c..49468540d9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java
@@ -40,355 +40,371 @@ public class ResultMapper implements Serializable {
 		eu.dnetlib.dhp.schema.oaf.Result input = (eu.dnetlib.dhp.schema.oaf.Result) in;
 		Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> ort = Optional.ofNullable(input.getResulttype());
 		if (ort.isPresent()) {
-			switch (ort.get().getClassid()) {
-				case "publication":
-					Optional<Journal> journal = Optional
-						.ofNullable(((eu.dnetlib.dhp.schema.oaf.Publication) input).getJournal());
-					if (journal.isPresent()) {
-						Journal j = journal.get();
-						Container c = new Container();
-						c.setConferencedate(j.getConferencedate());
-						c.setConferenceplace(j.getConferenceplace());
-						c.setEdition(j.getEdition());
-						c.setEp(j.getEp());
-						c.setIss(j.getIss());
-						c.setIssnLinking(j.getIssnLinking());
-						c.setIssnOnline(j.getIssnOnline());
-						c.setIssnPrinted(j.getIssnPrinted());
-						c.setName(j.getName());
-						c.setSp(j.getSp());
-						c.setVol(j.getVol());
-						out.setContainer(c);
-						out.setType(ModelConstants.PUBLICATION_DEFAULT_RESULTTYPE.getClassname());
-					}
-					break;
-				case "dataset":
-					eu.dnetlib.dhp.schema.oaf.Dataset id = (eu.dnetlib.dhp.schema.oaf.Dataset) input;
-					Optional.ofNullable(id.getSize()).ifPresent(v -> out.setSize(v.getValue()));
-					Optional.ofNullable(id.getVersion()).ifPresent(v -> out.setVersion(v.getValue()));
+			try {
 
-					out
-						.setGeolocation(
-							Optional
-								.ofNullable(id.getGeolocation())
-								.map(
-									igl -> igl
-										.stream()
-										.filter(Objects::nonNull)
-										.map(gli -> {
-											GeoLocation gl = new GeoLocation();
-											gl.setBox(gli.getBox());
-											gl.setPlace(gli.getPlace());
-											gl.setPoint(gli.getPoint());
-											return gl;
-										})
-										.collect(Collectors.toList()))
-								.orElse(null));
-
-					out.setType(ModelConstants.DATASET_DEFAULT_RESULTTYPE.getClassname());
-					break;
-				case "software":
-
-					eu.dnetlib.dhp.schema.oaf.Software is = (eu.dnetlib.dhp.schema.oaf.Software) input;
-					Optional
-						.ofNullable(is.getCodeRepositoryUrl())
-						.ifPresent(value -> out.setCodeRepositoryUrl(value.getValue()));
-					Optional
-						.ofNullable(is.getDocumentationUrl())
-						.ifPresent(
-							value -> out
-								.setDocumentationUrl(
-									value
-										.stream()
-										.map(Field::getValue)
-										.collect(Collectors.toList())));
-
-					Optional
-						.ofNullable(is.getProgrammingLanguage())
-						.ifPresent(value -> out.setProgrammingLanguage(value.getClassid()));
-
-					out.setType(ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE.getClassname());
-					break;
-				case "other":
-
-					eu.dnetlib.dhp.schema.oaf.OtherResearchProduct ir = (eu.dnetlib.dhp.schema.oaf.OtherResearchProduct) input;
-					out
-						.setContactgroup(
-							Optional
-								.ofNullable(ir.getContactgroup())
-								.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
-								.orElse(null));
-
-					out
-						.setContactperson(
-							Optional
-								.ofNullable(ir.getContactperson())
-								.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
-								.orElse(null));
-					out
-						.setTool(
-							Optional
-								.ofNullable(ir.getTool())
-								.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
-								.orElse(null));
-
-					out.setType(ModelConstants.ORP_DEFAULT_RESULTTYPE.getClassname());
-
-					break;
-				default:
-					throw new NoAvailableEntityTypeException();
-			}
-
-			Optional<List<Measure>> mes = Optional.ofNullable(input.getMeasures());
-			if (mes.isPresent()) {
-				List<KeyValue> measure = new ArrayList<>();
-				mes
-					.get()
-					.forEach(
-						m -> m.getUnit().forEach(u -> measure.add(KeyValue.newInstance(m.getId(), u.getValue()))));
-				out.setMeasures(measure);
-			}
-
-			Optional
-				.ofNullable(input.getAuthor())
-				.ifPresent(
-					ats -> out.setAuthor(ats.stream().map(ResultMapper::getAuthor).collect(Collectors.toList())));
-
-			// I do not map Access Right UNKNOWN or OTHER
-
-			Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> oar = Optional.ofNullable(input.getBestaccessright());
-			if (oar.isPresent() && Constants.accessRightsCoarMap.containsKey(oar.get().getClassid())) {
-				String code = Constants.accessRightsCoarMap.get(oar.get().getClassid());
-				out
-					.setBestaccessright(
-						AccessRight
-							.newInstance(
-								code,
-								Constants.coarCodeLabelMap.get(code),
-								Constants.COAR_ACCESS_RIGHT_SCHEMA));
-			}
-
-			final List<String> contributorList = new ArrayList<>();
-			Optional
-				.ofNullable(input.getContributor())
-				.ifPresent(value -> value.stream().forEach(c -> contributorList.add(c.getValue())));
-			out.setContributor(contributorList);
-
-			Optional
-				.ofNullable(input.getCountry())
-				.ifPresent(
-					value -> out
-						.setCountry(
-							value
-								.stream()
-								.map(
-									c -> {
-										if (c.getClassid().equals((ModelConstants.UNKNOWN))) {
-											return null;
-										}
-										Country country = new Country();
-										country.setCode(c.getClassid());
-										country.setLabel(c.getClassname());
-										Optional
-											.ofNullable(c.getDataInfo())
-											.ifPresent(
-												provenance -> country
-													.setProvenance(
-														Provenance
-															.newInstance(
-																provenance
-																	.getProvenanceaction()
-																	.getClassname(),
-																c.getDataInfo().getTrust())));
-										return country;
-									})
-								.filter(Objects::nonNull)
-								.collect(Collectors.toList())));
-
-			final List<String> coverageList = new ArrayList<>();
-			Optional
-				.ofNullable(input.getCoverage())
-				.ifPresent(value -> value.stream().forEach(c -> coverageList.add(c.getValue())));
-			out.setCoverage(coverageList);
-
-			out.setDateofcollection(input.getDateofcollection());
-
-			final List<String> descriptionList = new ArrayList<>();
-			Optional
-				.ofNullable(input.getDescription())
-				.ifPresent(value -> value.forEach(d -> descriptionList.add(d.getValue())));
-			out.setDescription(descriptionList);
-			Optional<Field<String>> oStr = Optional.ofNullable(input.getEmbargoenddate());
-			if (oStr.isPresent()) {
-				out.setEmbargoenddate(oStr.get().getValue());
-			}
-
-			final List<String> formatList = new ArrayList<>();
-			Optional
-				.ofNullable(input.getFormat())
-				.ifPresent(value -> value.stream().forEach(f -> formatList.add(f.getValue())));
-			out.setFormat(formatList);
-			out.setId(input.getId());
-			out.setOriginalId(input.getOriginalId());
-
-			Optional<List<eu.dnetlib.dhp.schema.oaf.Instance>> oInst = Optional
-				.ofNullable(input.getInstance());
-
-			if (oInst.isPresent()) {
-				if (Constants.DUMPTYPE.COMPLETE.getType().equals(dumpType)) {
-					((GraphResult) out)
-						.setInstance(
-							oInst.get().stream().map(ResultMapper::getGraphInstance).collect(Collectors.toList()));
-				} else {
-					((CommunityResult) out)
-						.setInstance(
-							oInst.get().stream().map(ResultMapper::getCommunityInstance).collect(Collectors.toList()));
-				}
-			}
-
-			Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> oL = Optional.ofNullable(input.getLanguage());
-			if (oL.isPresent()) {
-				eu.dnetlib.dhp.schema.oaf.Qualifier language = oL.get();
-				out.setLanguage(Qualifier.newInstance(language.getClassid(), language.getClassname()));
-			}
-			Optional<Long> oLong = Optional.ofNullable(input.getLastupdatetimestamp());
-			if (oLong.isPresent()) {
-				out.setLastupdatetimestamp(oLong.get());
-			}
-			Optional<List<StructuredProperty>> otitle = Optional.ofNullable(input.getTitle());
-			if (otitle.isPresent()) {
-				List<StructuredProperty> iTitle = otitle
-					.get()
-					.stream()
-					.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("main title"))
-					.collect(Collectors.toList());
-				if (!iTitle.isEmpty()) {
-					out.setMaintitle(iTitle.get(0).getValue());
+				addTypeSpecificInformation(out, input, ort);
+				Optional<List<Measure>> mes = Optional.ofNullable(input.getMeasures());
+				if (mes.isPresent()) {
+					List<KeyValue> measure = new ArrayList<>();
+					mes
+						.get()
+						.forEach(
+							m -> m.getUnit().forEach(u -> measure.add(KeyValue.newInstance(m.getId(), u.getValue()))));
+					out.setMeasures(measure);
 				}
 
-				iTitle = otitle
-					.get()
-					.stream()
-					.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("subtitle"))
-					.collect(Collectors.toList());
-				if (!iTitle.isEmpty()) {
-					out.setSubtitle(iTitle.get(0).getValue());
+				Optional
+					.ofNullable(input.getAuthor())
+					.ifPresent(
+						ats -> out.setAuthor(ats.stream().map(ResultMapper::getAuthor).collect(Collectors.toList())));
+
+				// I do not map Access Right UNKNOWN or OTHER
+
+				Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> oar = Optional.ofNullable(input.getBestaccessright());
+				if (oar.isPresent() && Constants.accessRightsCoarMap.containsKey(oar.get().getClassid())) {
+					String code = Constants.accessRightsCoarMap.get(oar.get().getClassid());
+					out
+						.setBestaccessright(
+							AccessRight
+								.newInstance(
+									code,
+									Constants.coarCodeLabelMap.get(code),
+									Constants.COAR_ACCESS_RIGHT_SCHEMA));
 				}
 
-			}
+				final List<String> contributorList = new ArrayList<>();
+				Optional
+					.ofNullable(input.getContributor())
+					.ifPresent(value -> value.stream().forEach(c -> contributorList.add(c.getValue())));
+				out.setContributor(contributorList);
 
-			Optional
-				.ofNullable(input.getPid())
-				.ifPresent(
-					value -> out
-						.setPid(
-							value
-								.stream()
-								.map(
-									p -> ControlledField
-										.newInstance(p.getQualifier().getClassid(), p.getValue()))
-								.collect(Collectors.toList())));
-
-			oStr = Optional.ofNullable(input.getDateofacceptance());
-			if (oStr.isPresent()) {
-				out.setPublicationdate(oStr.get().getValue());
-			}
-			oStr = Optional.ofNullable(input.getPublisher());
-			if (oStr.isPresent()) {
-				out.setPublisher(oStr.get().getValue());
-			}
-
-			Optional
-				.ofNullable(input.getSource())
-				.ifPresent(value -> out.setSource(value.stream().map(Field::getValue).collect(Collectors.toList())));
-
-			List<Subject> subjectList = new ArrayList<>();
-			Optional
-				.ofNullable(input.getSubject())
-				.ifPresent(
-					value -> value
-						.forEach(s -> subjectList.add(getSubject(s))));
-
-			out.setSubjects(subjectList);
-
-			out.setType(input.getResulttype().getClassid());
-		}
-
-		if (!Constants.DUMPTYPE.COMPLETE.getType().equals(dumpType)) {
-			((CommunityResult) out)
-				.setCollectedfrom(
-					input
-						.getCollectedfrom()
-						.stream()
-						.map(cf -> KeyValue.newInstance(cf.getKey(), cf.getValue()))
-						.collect(Collectors.toList()));
-
-			Set<String> communities = communityMap.keySet();
-			List<Context> contextList = Optional
-				.ofNullable(
-					input
-						.getContext())
-				.map(
-					value -> value
-						.stream()
-						.map(c -> {
-							String communityId = c.getId();
-							if (communityId.contains("::")) {
-								communityId = communityId.substring(0, communityId.indexOf("::"));
-							}
-							if (communities.contains(communityId)) {
-								Context context = new Context();
-								context.setCode(communityId);
-								context.setLabel(communityMap.get(communityId));
-								Optional<List<DataInfo>> dataInfo = Optional.ofNullable(c.getDataInfo());
-								if (dataInfo.isPresent()) {
-									List<Provenance> provenance = new ArrayList<>();
-									provenance
-										.addAll(
-											dataInfo
-												.get()
-												.stream()
-												.map(
-													di -> Optional
-														.ofNullable(di.getProvenanceaction())
-														.map(
-															provenanceaction -> Provenance
+				Optional
+					.ofNullable(input.getCountry())
+					.ifPresent(
+						value -> out
+							.setCountry(
+								value
+									.stream()
+									.map(
+										c -> {
+											if (c.getClassid().equals((ModelConstants.UNKNOWN))) {
+												return null;
+											}
+											Country country = new Country();
+											country.setCode(c.getClassid());
+											country.setLabel(c.getClassname());
+											Optional
+												.ofNullable(c.getDataInfo())
+												.ifPresent(
+													provenance -> country
+														.setProvenance(
+															Provenance
 																.newInstance(
-																	provenanceaction.getClassname(), di.getTrust()))
-														.orElse(null))
-												.filter(Objects::nonNull)
-												.collect(Collectors.toSet()));
+																	provenance
+																		.getProvenanceaction()
+																		.getClassname(),
+																	c.getDataInfo().getTrust())));
+											return country;
+										})
+									.filter(Objects::nonNull)
+									.collect(Collectors.toList())));
 
-									try {
-										context.setProvenance(getUniqueProvenance(provenance));
-									} catch (NoAvailableEntityTypeException e) {
-										e.printStackTrace();
-									}
-								}
-								return context;
-							}
-							return null;
-						})
-						.filter(Objects::nonNull)
-						.collect(Collectors.toList()))
-				.orElse(new ArrayList<>());
+				final List<String> coverageList = new ArrayList<>();
+				Optional
+					.ofNullable(input.getCoverage())
+					.ifPresent(value -> value.stream().forEach(c -> coverageList.add(c.getValue())));
+				out.setCoverage(coverageList);
 
-			if (!contextList.isEmpty()) {
-				Set<Integer> hashValue = new HashSet<>();
-				List<Context> remainigContext = new ArrayList<>();
-				contextList.forEach(c -> {
-					if (!hashValue.contains(c.hashCode())) {
-						remainigContext.add(c);
-						hashValue.add(c.hashCode());
+				out.setDateofcollection(input.getDateofcollection());
+
+				final List<String> descriptionList = new ArrayList<>();
+				Optional
+					.ofNullable(input.getDescription())
+					.ifPresent(value -> value.forEach(d -> descriptionList.add(d.getValue())));
+				out.setDescription(descriptionList);
+				Optional<Field<String>> oStr = Optional.ofNullable(input.getEmbargoenddate());
+				if (oStr.isPresent()) {
+					out.setEmbargoenddate(oStr.get().getValue());
+				}
+
+				final List<String> formatList = new ArrayList<>();
+				Optional
+					.ofNullable(input.getFormat())
+					.ifPresent(value -> value.stream().forEach(f -> formatList.add(f.getValue())));
+				out.setFormat(formatList);
+				out.setId(input.getId());
+				out.setOriginalId(input.getOriginalId());
+
+				Optional<List<eu.dnetlib.dhp.schema.oaf.Instance>> oInst = Optional
+					.ofNullable(input.getInstance());
+
+				if (oInst.isPresent()) {
+					if (Constants.DUMPTYPE.COMPLETE.getType().equals(dumpType)) {
+						((GraphResult) out)
+							.setInstance(
+								oInst.get().stream().map(ResultMapper::getGraphInstance).collect(Collectors.toList()));
+					} else {
+						((CommunityResult) out)
+							.setInstance(
+								oInst
+									.get()
+									.stream()
+									.map(ResultMapper::getCommunityInstance)
+									.collect(Collectors.toList()));
 					}
-				});
-				((CommunityResult) out).setContext(remainigContext);
+				}
+
+				Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> oL = Optional.ofNullable(input.getLanguage());
+				if (oL.isPresent()) {
+					eu.dnetlib.dhp.schema.oaf.Qualifier language = oL.get();
+					out.setLanguage(Qualifier.newInstance(language.getClassid(), language.getClassname()));
+				}
+				Optional<Long> oLong = Optional.ofNullable(input.getLastupdatetimestamp());
+				if (oLong.isPresent()) {
+					out.setLastupdatetimestamp(oLong.get());
+				}
+				Optional<List<StructuredProperty>> otitle = Optional.ofNullable(input.getTitle());
+				if (otitle.isPresent()) {
+					List<StructuredProperty> iTitle = otitle
+						.get()
+						.stream()
+						.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("main title"))
+						.collect(Collectors.toList());
+					if (!iTitle.isEmpty()) {
+						out.setMaintitle(iTitle.get(0).getValue());
+					}
+
+					iTitle = otitle
+						.get()
+						.stream()
+						.filter(t -> t.getQualifier().getClassid().equalsIgnoreCase("subtitle"))
+						.collect(Collectors.toList());
+					if (!iTitle.isEmpty()) {
+						out.setSubtitle(iTitle.get(0).getValue());
+					}
+
+				}
+
+				Optional
+					.ofNullable(input.getPid())
+					.ifPresent(
+						value -> out
+							.setPid(
+								value
+									.stream()
+									.map(
+										p -> ControlledField
+											.newInstance(p.getQualifier().getClassid(), p.getValue()))
+									.collect(Collectors.toList())));
+
+				oStr = Optional.ofNullable(input.getDateofacceptance());
+				if (oStr.isPresent()) {
+					out.setPublicationdate(oStr.get().getValue());
+				}
+				oStr = Optional.ofNullable(input.getPublisher());
+				if (oStr.isPresent()) {
+					out.setPublisher(oStr.get().getValue());
+				}
+
+				Optional
+					.ofNullable(input.getSource())
+					.ifPresent(
+						value -> out.setSource(value.stream().map(Field::getValue).collect(Collectors.toList())));
+
+				List<Subject> subjectList = new ArrayList<>();
+				Optional
+					.ofNullable(input.getSubject())
+					.ifPresent(
+						value -> value
+							.forEach(s -> subjectList.add(getSubject(s))));
+
+				out.setSubjects(subjectList);
+
+				out.setType(input.getResulttype().getClassid());
+
+				if (!Constants.DUMPTYPE.COMPLETE.getType().equals(dumpType)) {
+					((CommunityResult) out)
+						.setCollectedfrom(
+							input
+								.getCollectedfrom()
+								.stream()
+								.map(cf -> KeyValue.newInstance(cf.getKey(), cf.getValue()))
+								.collect(Collectors.toList()));
+
+					Set<String> communities = communityMap.keySet();
+					List<Context> contextList = Optional
+						.ofNullable(
+							input
+								.getContext())
+						.map(
+							value -> value
+								.stream()
+								.map(c -> {
+									String communityId = c.getId();
+									if (communityId.contains("::")) {
+										communityId = communityId.substring(0, communityId.indexOf("::"));
+									}
+									if (communities.contains(communityId)) {
+										Context context = new Context();
+										context.setCode(communityId);
+										context.setLabel(communityMap.get(communityId));
+										Optional<List<DataInfo>> dataInfo = Optional.ofNullable(c.getDataInfo());
+										if (dataInfo.isPresent()) {
+											List<Provenance> provenance = new ArrayList<>();
+											provenance
+												.addAll(
+													dataInfo
+														.get()
+														.stream()
+														.map(
+															di -> Optional
+																.ofNullable(di.getProvenanceaction())
+																.map(
+																	provenanceaction -> Provenance
+																		.newInstance(
+																			provenanceaction.getClassname(),
+																			di.getTrust()))
+																.orElse(null))
+														.filter(Objects::nonNull)
+														.collect(Collectors.toSet()));
+
+											try {
+												context.setProvenance(getUniqueProvenance(provenance));
+											} catch (NoAvailableEntityTypeException e) {
+												e.printStackTrace();
+											}
+										}
+										return context;
+									}
+									return null;
+								})
+								.filter(Objects::nonNull)
+								.collect(Collectors.toList()))
+						.orElse(new ArrayList<>());
+
+					if (!contextList.isEmpty()) {
+						Set<Integer> hashValue = new HashSet<>();
+						List<Context> remainigContext = new ArrayList<>();
+						contextList.forEach(c -> {
+							if (!hashValue.contains(c.hashCode())) {
+								remainigContext.add(c);
+								hashValue.add(c.hashCode());
+							}
+						});
+						((CommunityResult) out).setContext(remainigContext);
+					}
+				}
+			} catch (ClassCastException cce) {
+				return out;
 			}
 		}
+
 		return out;
 
 	}
 
+	private static void addTypeSpecificInformation(Result out, eu.dnetlib.dhp.schema.oaf.Result input,
+		Optional<eu.dnetlib.dhp.schema.oaf.Qualifier> ort) throws NoAvailableEntityTypeException {
+		switch (ort.get().getClassid()) {
+			case "publication":
+				Optional<Journal> journal = Optional
+					.ofNullable(((Publication) input).getJournal());
+				if (journal.isPresent()) {
+					Journal j = journal.get();
+					Container c = new Container();
+					c.setConferencedate(j.getConferencedate());
+					c.setConferenceplace(j.getConferenceplace());
+					c.setEdition(j.getEdition());
+					c.setEp(j.getEp());
+					c.setIss(j.getIss());
+					c.setIssnLinking(j.getIssnLinking());
+					c.setIssnOnline(j.getIssnOnline());
+					c.setIssnPrinted(j.getIssnPrinted());
+					c.setName(j.getName());
+					c.setSp(j.getSp());
+					c.setVol(j.getVol());
+					out.setContainer(c);
+					out.setType(ModelConstants.PUBLICATION_DEFAULT_RESULTTYPE.getClassname());
+				}
+				break;
+			case "dataset":
+				Dataset id = (Dataset) input;
+				Optional.ofNullable(id.getSize()).ifPresent(v -> out.setSize(v.getValue()));
+				Optional.ofNullable(id.getVersion()).ifPresent(v -> out.setVersion(v.getValue()));
+
+				out
+					.setGeolocation(
+						Optional
+							.ofNullable(id.getGeolocation())
+							.map(
+								igl -> igl
+									.stream()
+									.filter(Objects::nonNull)
+									.map(gli -> {
+										GeoLocation gl = new GeoLocation();
+										gl.setBox(gli.getBox());
+										gl.setPlace(gli.getPlace());
+										gl.setPoint(gli.getPoint());
+										return gl;
+									})
+									.collect(Collectors.toList()))
+							.orElse(null));
+
+				out.setType(ModelConstants.DATASET_DEFAULT_RESULTTYPE.getClassname());
+				break;
+			case "software":
+
+				Software is = (Software) input;
+				Optional
+					.ofNullable(is.getCodeRepositoryUrl())
+					.ifPresent(value -> out.setCodeRepositoryUrl(value.getValue()));
+				Optional
+					.ofNullable(is.getDocumentationUrl())
+					.ifPresent(
+						value -> out
+							.setDocumentationUrl(
+								value
+									.stream()
+									.map(Field::getValue)
+									.collect(Collectors.toList())));
+
+				Optional
+					.ofNullable(is.getProgrammingLanguage())
+					.ifPresent(value -> out.setProgrammingLanguage(value.getClassid()));
+
+				out.setType(ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE.getClassname());
+				break;
+			case "other":
+
+				OtherResearchProduct ir = (OtherResearchProduct) input;
+				out
+					.setContactgroup(
+						Optional
+							.ofNullable(ir.getContactgroup())
+							.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
+							.orElse(null));
+
+				out
+					.setContactperson(
+						Optional
+							.ofNullable(ir.getContactperson())
+							.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
+							.orElse(null));
+				out
+					.setTool(
+						Optional
+							.ofNullable(ir.getTool())
+							.map(value -> value.stream().map(Field::getValue).collect(Collectors.toList()))
+							.orElse(null));
+
+				out.setType(ModelConstants.ORP_DEFAULT_RESULTTYPE.getClassname());
+
+				break;
+			default:
+				throw new NoAvailableEntityTypeException();
+		}
+	}
+
 	private static Instance getGraphInstance(eu.dnetlib.dhp.schema.oaf.Instance i) {
 		Instance instance = new Instance();
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
index 1eff998920..a6595d756d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/SaveCommunityMap.java
@@ -19,6 +19,7 @@ import org.slf4j.LoggerFactory;
 import org.xml.sax.SAXException;
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.oa.graph.dump.community.CommunityMap;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
 
 /**
@@ -86,10 +87,13 @@ public class SaveCommunityMap implements Serializable {
 
 	private void saveCommunityMap(boolean singleCommunity, String communityId)
 		throws ISLookUpException, IOException, DocumentException, SAXException {
+		final String communityMapString = Utils.OBJECT_MAPPER
+			.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, communityId));
+		log.info("communityMap {} ", communityMapString);
 		writer
 			.write(
-				Utils.OBJECT_MAPPER
-					.writeValueAsString(queryInformationSystem.getCommunityMap(singleCommunity, communityId)));
+				communityMapString);
+		writer.close();
 	}
 
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
index 8062205101..677715847c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/input_cm_parameters.json
@@ -30,7 +30,7 @@
 		"paramLongName": "communityId",
 		"paramDescription": "the id of the community for which to create the dump",
 		"paramRequired": true
-	}		}
+	}
 ]
 
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml
index e69de29bb2..e5ec3d0aee 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/wf/subworkflows/funder/oozie_app/config-default.xml
@@ -0,0 +1,30 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>hiveMetastoreUris</name>
+        <value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
+    </property>
+    <property>
+        <name>hiveJdbcUrl</name>
+        <value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
+    </property>
+    <property>
+        <name>hiveDbName</name>
+        <value>openaire</value>
+    </property>
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file

From 326bf63775db8e3ef896a2aa1a091ec6e1d2b0ce Mon Sep 17 00:00:00 2001
From: miconis <m.debonis991@gmail.com>
Date: Wed, 13 Oct 2021 12:24:48 +0200
Subject: [PATCH 078/106] integration of parent child orgs relations

---
 .../raw/MigrateDbEntitiesApplication.java     | 28 +++++++++++++++++++
 .../sql/queryParentChildRelsOpenOrgs.sql      | 13 +++++++++
 2 files changed, 41 insertions(+)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryParentChildRelsOpenOrgs.sql

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
index d78732f9b9..29df17f1bb 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
@@ -186,6 +186,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 
 					log.info("Processing Openorgs Merge Rels...");
 					smdbe.execute("queryOpenOrgsSimilarityForProvision.sql", smdbe::processOrgOrgMergeRels);
+
+					log.info("Processing Openorgs Parent/Child Rels...");
+					smdbe.execute("queryParentChildRelsOpenOrgs.sql", smdbe::processOrgOrgParentChildRels);
 					break;
 
 				case openaire_organizations:
@@ -689,6 +692,31 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 		}
 	}
 
+	public List<Oaf> processOrgOrgParentChildRels(final ResultSet rs) {
+		try {
+			final DataInfo info = prepareDataInfo(rs); // TODO
+
+			final String orgId1 = createOpenaireId(20, rs.getString("source"), true);
+			final String orgId2 = createOpenaireId(20, rs.getString("target"), true);
+
+			final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
+
+			final Relation r = new Relation();
+			r.setRelType(ORG_ORG_RELTYPE);
+			r.setSubRelType(ModelConstants.RELATIONSHIP);
+			r.setRelClass(rs.getString("reltype").equalsIgnoreCase("parent") ? ModelConstants.IS_PARENT_OF : ModelConstants.IS_CHILD_OF);
+			r.setSource(orgId1);
+			r.setTarget(orgId2);
+			r.setCollectedfrom(collectedFrom);
+			r.setDataInfo(info);
+			r.setLastupdatetimestamp(lastUpdateTimestamp);
+
+			return Arrays.asList(r);
+		} catch (final Exception e) {
+			throw new RuntimeException(e);
+		}
+	}
+
 	public List<Oaf> processOrgOrgSimRels(final ResultSet rs) {
 		try {
 			final DataInfo info = prepareDataInfo(rs); // TODO
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryParentChildRelsOpenOrgs.sql b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryParentChildRelsOpenOrgs.sql
new file mode 100644
index 0000000000..388fee3f58
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/sql/queryParentChildRelsOpenOrgs.sql
@@ -0,0 +1,13 @@
+SELECT
+	id1                                                            AS source,
+	id2                                                            AS target,
+	reltype                                                        AS type,
+	false                                                          AS inferred,
+	false                                                          AS deletedbyinference,
+	0.95                                                           AS trust,
+	''                                                             AS inferenceprovenance,
+	'openaire____::openorgs'                                       AS collectedfromid,
+	'OpenOrgs Database'                                            AS collectedfromname,
+	'sysimport:crosswalk:entityregistry@@@dnet:provenance_actions' AS provenanceaction
+FROM relationships
+WHERE reltype = 'Child' OR reltype = 'Parent'
\ No newline at end of file

From 995c1eddaf6adcf3a3a24136fc948cd939a5e7d0 Mon Sep 17 00:00:00 2001
From: miconis <m.debonis991@gmail.com>
Date: Wed, 13 Oct 2021 17:07:10 +0200
Subject: [PATCH 079/106] minor change

---
 .../dhp/oa/graph/raw/MigrateDbEntitiesApplication.java    | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
index 29df17f1bb..00184bc9db 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
@@ -699,12 +699,16 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 			final String orgId1 = createOpenaireId(20, rs.getString("source"), true);
 			final String orgId2 = createOpenaireId(20, rs.getString("target"), true);
 
-			final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
+			final List<KeyValue> collectedFrom = listKeyValues(
+				createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
 
 			final Relation r = new Relation();
 			r.setRelType(ORG_ORG_RELTYPE);
 			r.setSubRelType(ModelConstants.RELATIONSHIP);
-			r.setRelClass(rs.getString("reltype").equalsIgnoreCase("parent") ? ModelConstants.IS_PARENT_OF : ModelConstants.IS_CHILD_OF);
+			r
+				.setRelClass(
+					rs.getString("reltype").equalsIgnoreCase("parent") ? ModelConstants.IS_PARENT_OF
+						: ModelConstants.IS_CHILD_OF);
 			r.setSource(orgId1);
 			r.setTarget(orgId2);
 			r.setCollectedfrom(collectedFrom);

From 4b7c8dff2dec9fae75f73dca36b2f3c87de4441f Mon Sep 17 00:00:00 2001
From: antleb <antleb@di.uoa.gr>
Date: Thu, 14 Oct 2021 18:53:35 +0300
Subject: [PATCH 080/106] fetching affiliated results for 4 orgs in monitor.
 fixed affiliated orgs in stats db

---
 .../oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql | 2 +-
 .../eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
index 9ea50d4886..d39af37d5f 100644
--- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
+++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
@@ -17,7 +17,7 @@ create table TARGET.result as
         union all
         select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id)
         union all
-        select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on p.id=rp.project join SOURCE.project_organizations po on po.id=p.id where rp.id=r.id and po.organization in (
+        select * from SOURCE.result r where exists (select 1 from SOURCE.result_organization ro where ro.id=r.id and ro.organization in (
             'openorgs____::759d59f05d77188faee99b7493b46805',
             'openorgs____::b84450f9864182c67b8611b5593f4250',
             'openorgs____::d41cf6bd4ab1b1362a44397e0b95c975',
diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
index b3cbc9b419..d461bd343e 100644
--- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
+++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
@@ -126,7 +126,7 @@ FROM ${stats_db_name}.otherresearchproduct_topics;
 CREATE TABLE ${stats_db_name}.result_organization AS
 SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
 FROM ${openaire_db_name}.relation r
-WHERE r.reltype = 'resultOrganization'
+WHERE r.reltype = 'resultOrganization' and r.relclass='hasAuthorInstitution' and r.subreltype='affiliation'
   and r.datainfo.deletedbyinference = false;
 
 CREATE TABLE ${stats_db_name}.result_projects AS

From 41ecb1eb61e2d7a4285d60749c1ee0146b3436f9 Mon Sep 17 00:00:00 2001
From: antleb <antleb@di.uoa.gr>
Date: Fri, 15 Oct 2021 13:42:55 +0300
Subject: [PATCH 081/106] invalidating medatadata before context thingies

---
 .../eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh         | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh
index 6d42ab13d4..2a40eb9204 100644
--- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh
+++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh
@@ -26,6 +26,8 @@ hdfs dfs -copyFromLocal concepts.csv ${TMP}
 hdfs dfs -chmod -R 777 ${TMP}
 
 echo "Creating and populating impala tables"
+impala-shell -q "invalidate metadata"
+impala-shell -d ${TARGET_DB} -q "invalidate metadata"
 impala-shell -q "create table ${TARGET_DB}.context (id string, name string) row format delimited fields terminated by ','"
 impala-shell -q "create table ${TARGET_DB}.category (context string, id string, name string) row format delimited fields terminated by ','"
 impala-shell -q "create table ${TARGET_DB}.concept (category string, id string, name string) row format delimited fields terminated by ','"

From 7b15b88d4cdc60daf7cc7e60badea8f844abb57e Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Fri, 15 Oct 2021 15:00:15 +0200
Subject: [PATCH 082/106] renamed wrong package, implemented last aggregation
 workflow for scholexplorer

---
 .../dhp/sx/bio/BioDBToOAF.scala               |   2 +-
 .../bio/SparkTransformBioDatabaseToOAF.scala  |   6 +-
 .../ebi/SparkCreateBaselineDataFrame.scala    |   4 +-
 .../sx/bio/ebi/SparkDownloadEBILinks.scala    |   7 +-
 .../dhp/sx/bio/ebi/SparkEBILinksToOaf.scala   |   7 +-
 .../dhp/sx/bio/pubmed/PMArticle.java          |   2 +-
 .../dhp/sx/bio/pubmed/PMAuthor.java           |   2 +-
 .../dhp/sx/bio/pubmed/PMGrant.java            |   2 +-
 .../dhp/sx/bio/pubmed/PMJournal.java          |   2 +-
 .../dhp/sx/bio/pubmed/PMParser.scala          |   2 +-
 .../dhp/sx/bio/pubmed/PMSubject.java          |   2 +-
 .../dhp/sx/bio/pubmed/PubMedToOaf.scala       |   2 +-
 .../sx/bio/db}/oozie_app/config-default.xml   |   0
 .../dhp/sx/bio/db/oozie_app/workflow.xml      |  51 +++++
 .../dhp/sx/bio/ebi}/bio_to_oaf_params.json    |   0
 .../dhp/sx/bio/BioScholixTest.scala           |   6 +-
 .../dhp/sx/graph/bio/oozie_app/workflow.xml   | 177 ------------------
 17 files changed, 75 insertions(+), 199 deletions(-)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/BioDBToOAF.scala (99%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala (91%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala (98%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala (95%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala (90%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMArticle.java (97%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMAuthor.java (93%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMGrant.java (94%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMJournal.java (95%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMParser.scala (99%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PMSubject.java (94%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/pubmed/PubMedToOaf.scala (99%)
 rename dhp-workflows/{dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio => dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db}/oozie_app/config-default.xml (100%)
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/workflow.xml
 rename dhp-workflows/{dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio => dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi}/bio_to_oaf_params.json (100%)
 rename dhp-workflows/dhp-aggregation/src/test/java/eu/{dnetllib => dnetlib}/dhp/sx/bio/BioScholixTest.scala (97%)
 delete mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/BioDBToOAF.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/BioDBToOAF.scala
similarity index 99%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/BioDBToOAF.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/BioDBToOAF.scala
index dffc88c6ca..70dcc0184c 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/BioDBToOAF.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/BioDBToOAF.scala
@@ -1,4 +1,4 @@
-package eu.dnetllib.dhp.sx.bio
+package eu.dnetlib.dhp.sx.bio
 
 import eu.dnetlib.dhp.schema.common.ModelConstants
 import eu.dnetlib.dhp.schema.oaf.utils.{GraphCleaningFunctions, OafMapperUtils}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
similarity index 91%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
index 16d2b25a62..7a62437a36 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
@@ -1,8 +1,8 @@
-package eu.dnetllib.dhp.sx.bio
+package eu.dnetlib.dhp.sx.bio
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import eu.dnetlib.dhp.schema.oaf.Oaf
-import eu.dnetllib.dhp.sx.bio.BioDBToOAF.ScholixResolved
+import BioDBToOAF.ScholixResolved
 import org.apache.commons.io.IOUtils
 import org.apache.spark.SparkConf
 import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
@@ -13,7 +13,7 @@ object SparkTransformBioDatabaseToOAF {
   def main(args: Array[String]): Unit = {
     val conf: SparkConf = new SparkConf()
     val log: Logger = LoggerFactory.getLogger(getClass)
-    val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/bio/bio_to_oaf_params.json")))
+    val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/bio/ebi/bio_to_oaf_params.json")))
     parser.parseArgument(args)
     val database: String = parser.get("database")
     log.info("database: {}", database)
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala
similarity index 98%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala
index 17bf3fa6b3..17d21f19c6 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkCreateBaselineDataFrame.scala
@@ -1,10 +1,10 @@
-package eu.dnetllib.dhp.sx.bio.ebi
+package eu.dnetlib.dhp.sx.bio.ebi
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
 import eu.dnetlib.dhp.schema.oaf.Result
+import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal, PMParser, PubMedToOaf}
 import eu.dnetlib.dhp.utils.ISLookupClientFactory
-import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal, PMParser, PubMedToOaf}
 import org.apache.commons.io.IOUtils
 import org.apache.hadoop.conf.Configuration
 import org.apache.hadoop.fs.{FSDataOutputStream, FileSystem, Path}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala
similarity index 95%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala
index 85fbd99c47..eab6b1dc6a 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkDownloadEBILinks.scala
@@ -1,8 +1,9 @@
-package eu.dnetllib.dhp.sx.bio.ebi
+package eu.dnetlib.dhp.sx.bio.ebi
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetllib.dhp.sx.bio.BioDBToOAF.EBILinkItem
-import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal}
+import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMAuthor, PMJournal}
+import eu.dnetlib.dhp.sx.bio.BioDBToOAF.EBILinkItem
+import eu.dnetlib.dhp.sx.bio.pubmed.PMJournal
 import org.apache.commons.io.IOUtils
 import org.apache.http.client.config.RequestConfig
 import org.apache.http.client.methods.HttpGet
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
similarity index 90%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
index 10467884cd..b19bfc23a5 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
@@ -1,9 +1,10 @@
-package eu.dnetllib.dhp.sx.bio.ebi
+package eu.dnetlib.dhp.sx.bio.ebi
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import eu.dnetlib.dhp.schema.oaf.Oaf
-import eu.dnetllib.dhp.sx.bio.BioDBToOAF
-import eu.dnetllib.dhp.sx.bio.BioDBToOAF.EBILinkItem
+import eu.dnetlib.dhp.sx.bio.BioDBToOAF
+import eu.dnetlib.dhp.sx.bio.BioDBToOAF.EBILinkItem
+import BioDBToOAF.EBILinkItem
 import org.apache.commons.io.IOUtils
 import org.apache.spark.SparkConf
 import org.apache.spark.sql._
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMArticle.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMArticle.java
similarity index 97%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMArticle.java
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMArticle.java
index 305bb89be0..8815284255 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMArticle.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMArticle.java
@@ -1,5 +1,5 @@
 
-package eu.dnetllib.dhp.sx.bio.pubmed;
+package eu.dnetlib.dhp.sx.bio.pubmed;
 
 import java.io.Serializable;
 import java.util.ArrayList;
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMAuthor.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMAuthor.java
similarity index 93%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMAuthor.java
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMAuthor.java
index c89929981b..cef92d0031 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMAuthor.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMAuthor.java
@@ -1,5 +1,5 @@
 
-package eu.dnetllib.dhp.sx.bio.pubmed;
+package eu.dnetlib.dhp.sx.bio.pubmed;
 
 import java.io.Serializable;
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMGrant.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMGrant.java
similarity index 94%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMGrant.java
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMGrant.java
index 7df5dd5f2f..ce9420cc13 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMGrant.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMGrant.java
@@ -1,5 +1,5 @@
 
-package eu.dnetllib.dhp.sx.bio.pubmed;
+package eu.dnetlib.dhp.sx.bio.pubmed;
 
 public class PMGrant {
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMJournal.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMJournal.java
similarity index 95%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMJournal.java
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMJournal.java
index 6065416f8d..863a23bd50 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMJournal.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMJournal.java
@@ -1,5 +1,5 @@
 
-package eu.dnetllib.dhp.sx.bio.pubmed;
+package eu.dnetlib.dhp.sx.bio.pubmed;
 
 import java.io.Serializable;
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMParser.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMParser.scala
similarity index 99%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMParser.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMParser.scala
index 8fa226b7d5..80cb0667cb 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMParser.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMParser.scala
@@ -1,4 +1,4 @@
-package eu.dnetllib.dhp.sx.bio.pubmed
+package eu.dnetlib.dhp.sx.bio.pubmed
 
 import scala.xml.MetaData
 import scala.xml.pull.{EvElemEnd, EvElemStart, EvText, XMLEventReader}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMSubject.java b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMSubject.java
similarity index 94%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMSubject.java
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMSubject.java
index e6ab61b875..862d39a940 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PMSubject.java
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PMSubject.java
@@ -1,5 +1,5 @@
 
-package eu.dnetllib.dhp.sx.bio.pubmed;
+package eu.dnetlib.dhp.sx.bio.pubmed;
 
 public class PMSubject {
 	private String value;
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PubMedToOaf.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PubMedToOaf.scala
similarity index 99%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PubMedToOaf.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PubMedToOaf.scala
index a1777a230c..13f38408ed 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetllib/dhp/sx/bio/pubmed/PubMedToOaf.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/pubmed/PubMedToOaf.scala
@@ -1,4 +1,4 @@
-package eu.dnetllib.dhp.sx.bio.pubmed
+package eu.dnetlib.dhp.sx.bio.pubmed
 
 import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
 import eu.dnetlib.dhp.schema.common.ModelConstants
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/config-default.xml
similarity index 100%
rename from dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/config-default.xml
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/config-default.xml
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/workflow.xml
new file mode 100644
index 0000000000..071d202b6f
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/db/oozie_app/workflow.xml
@@ -0,0 +1,51 @@
+    <workflow-app name="Transform_BioEntity_Workflow" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>sourcePath</name>
+            <description>the PDB Database Working Path</description>
+        </property>
+        <property>
+            <name>database</name>
+            <description>the PDB Database Working Path</description>
+        </property>
+
+        <property>
+            <name>targetPath</name>
+            <description>the Target Working dir path</description>
+        </property>
+    </parameters>
+
+    <start to="ConvertDB"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="ConvertDB">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>Convert Bio DB to OAF Dataset</name>
+            <class>eu.dnetlib.dhp.sx.bio.SparkTransformBioDatabaseToOAF</class>
+            <jar>dhp-aggregation-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.shuffle.partitions=2000
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--master</arg><arg>yarn</arg>
+            <arg>--dbPath</arg><arg>${sourcePath}</arg>
+            <arg>--database</arg><arg>${database}</arg>
+            <arg>--targetPath</arg><arg>${targetPath}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+    <end name="End"/>
+
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/bio_to_oaf_params.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/bio_to_oaf_params.json
similarity index 100%
rename from dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/bio_to_oaf_params.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/bio_to_oaf_params.json
diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetllib/dhp/sx/bio/BioScholixTest.scala b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/sx/bio/BioScholixTest.scala
similarity index 97%
rename from dhp-workflows/dhp-aggregation/src/test/java/eu/dnetllib/dhp/sx/bio/BioScholixTest.scala
rename to dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/sx/bio/BioScholixTest.scala
index c072f149ce..893a6e628e 100644
--- a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetllib/dhp/sx/bio/BioScholixTest.scala
+++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/sx/bio/BioScholixTest.scala
@@ -1,10 +1,10 @@
-package eu.dnetllib.dhp.sx.bio
+package eu.dnetlib.dhp.sx.bio
 
 import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper, SerializationFeature}
 import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
 import eu.dnetlib.dhp.schema.oaf.{Oaf, Relation, Result}
-import eu.dnetllib.dhp.sx.bio.BioDBToOAF.ScholixResolved
-import eu.dnetllib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PubMedToOaf}
+import eu.dnetlib.dhp.sx.bio.BioDBToOAF.ScholixResolved
+import eu.dnetlib.dhp.sx.bio.pubmed.{PMArticle, PMParser, PubMedToOaf}
 import org.json4s.DefaultFormats
 import org.json4s.JsonAST.{JField, JObject, JString}
 import org.json4s.jackson.JsonMethods.parse
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/workflow.xml
deleted file mode 100644
index 0df085ee1f..0000000000
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/bio/oozie_app/workflow.xml
+++ /dev/null
@@ -1,177 +0,0 @@
-    <workflow-app name="Transform_BioEntity_Workflow" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>PDBPath</name>
-            <description>the PDB Database Working Path</description>
-        </property>
-
-        <property>
-            <name>UNIPROTDBPath</name>
-            <description>the UNIPROT Database Working Path</description>
-        </property>
-
-        <property>
-            <name>EBIDataset</name>
-            <description>the EBI Links Dataset  Path</description>
-        </property>
-
-        <property>
-            <name>ScholixResolvedDBPath</name>
-            <description>the Scholix Resolved Dataset  Path</description>
-        </property>
-
-        <property>
-            <name>CrossrefLinksPath</name>
-            <description>the CrossrefLinks Path</description>
-        </property>
-        <property>
-            <name>targetPath</name>
-            <description>the Target Working dir path</description>
-        </property>
-    </parameters>
-
-    <start to="ConvertPDB"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-    <action name="ConvertPDB">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>Convert PDB to OAF Dataset</name>
-            <class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=2000
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn</arg>
-            <arg>--dbPath</arg><arg>${PDBPath}</arg>
-            <arg>--database</arg><arg>PDB</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/pdb_OAF</arg>
-        </spark>
-        <ok to="ConvertUNIPROT"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertUNIPROT">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>Convert UNIPROT to OAF Dataset</name>
-            <class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=2000
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn</arg>
-            <arg>--dbPath</arg><arg>${UNIPROTDBPath}</arg>
-            <arg>--database</arg><arg>UNIPROT</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/uniprot_OAF</arg>
-        </spark>
-        <ok to="ConvertEBILinks"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertEBILinks">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>Convert EBI Links to OAF Dataset</name>
-            <class>eu.dnetlib.dhp.sx.graph.ebi.SparkEBILinksToOaf</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=2000
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn</arg>
-            <arg>--sourcePath</arg><arg>${EBIDataset}</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/ebi_OAF</arg>
-        </spark>
-        <ok to="ConvertScholixResolved"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertScholixResolved">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>Convert Scholix to OAF Dataset</name>
-            <class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=2000
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn</arg>
-            <arg>--dbPath</arg><arg>${ScholixResolvedDBPath}</arg>
-            <arg>--database</arg><arg>SCHOLIX</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/scholix_resolved_OAF</arg>
-        </spark>
-        <ok to="ConvertCrossrefLinks"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="ConvertCrossrefLinks">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn</master>
-            <mode>cluster</mode>
-            <name>Convert Crossref Links to OAF Dataset</name>
-            <class>eu.dnetlib.dhp.sx.graph.bio.SparkTransformBioDatabaseToOAF</class>
-            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=2000
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--master</arg><arg>yarn</arg>
-            <arg>--dbPath</arg><arg>${CrossrefLinksPath}</arg>
-            <arg>--database</arg><arg>CROSSREF_LINKS</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/crossref_unresolved_relation_OAF</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-
-
-
-    <end name="End"/>
-
-</workflow-app>
\ No newline at end of file

From 5f780a6ba19233edf20014cb0b81a8246e962384 Mon Sep 17 00:00:00 2001
From: miconis <m.debonis991@gmail.com>
Date: Mon, 18 Oct 2021 23:30:40 +0200
Subject: [PATCH 083/106] bug fix in migrate entities: parameter name was wrong

---
 .../dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java  | 2 +-
 .../eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml      | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
index 00184bc9db..e453f79186 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateDbEntitiesApplication.java
@@ -707,7 +707,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication i
 			r.setSubRelType(ModelConstants.RELATIONSHIP);
 			r
 				.setRelClass(
-					rs.getString("reltype").equalsIgnoreCase("parent") ? ModelConstants.IS_PARENT_OF
+					rs.getString("type").equalsIgnoreCase("parent") ? ModelConstants.IS_PARENT_OF
 						: ModelConstants.IS_CHILD_OF);
 			r.setSource(orgId1);
 			r.setTarget(orgId2);
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index 321ca40909..8139ecf7e3 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -258,7 +258,7 @@
         <switch>
             <case to="ImportDB">${wf:conf('reuseDB') eq false}</case>
             <case to="reuse_odf">${wf:conf('reuseDB') eq true}</case>
-            <default to="ImportDB_claims"/>
+            <default to="ImportDB"/>
         </switch>
     </decision>
 

From a894d7adf3dd104f56bdfbbe8e4797813a9f168a Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 19 Oct 2021 10:02:55 +0200
Subject: [PATCH 084/106] updated version of dhp-schemas

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 3e8d6bc190..02bc5d8d4e 100644
--- a/pom.xml
+++ b/pom.xml
@@ -753,7 +753,7 @@
 		<mockito-core.version>3.3.3</mockito-core.version>
 		<mongodb.driver.version>3.4.2</mongodb.driver.version>
 		<vtd.version>[2.12,3.0)</vtd.version>
-		<dhp-schemas.version>[2.8.20]</dhp-schemas.version>
+		<dhp-schemas.version>[2.8.21]</dhp-schemas.version>
 		<dnet-actionmanager-api.version>[4.0.3]</dnet-actionmanager-api.version>
 		<dnet-actionmanager-common.version>[6.0.5]</dnet-actionmanager-common.version>
 		<dnet-openaire-broker-common.version>[3.1.6]</dnet-openaire-broker-common.version>

From c7f6cd2591ddc7b6e9f6a1ca4eb29c62a73869f5 Mon Sep 17 00:00:00 2001
From: "miriam.baglioni" <miriam.baglioni@isti.cnr.it>
Date: Tue, 19 Oct 2021 10:15:26 +0200
Subject: [PATCH 085/106] added again the setting for saXReader

---
 .../eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java    | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
index ab5434ed0c..b972de6e9a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/QueryInformationSystem.java
@@ -62,7 +62,7 @@ public class QueryInformationSystem {
 		for (String xml : communityMap) {
 			final Document doc;
 			final SAXReader reader = new SAXReader();
-			// reader.setFeature("http://apache.org/xml/features/disallow-doctype-decl", true);
+			reader.setFeature("http://apache.org/xml/features/disallow-doctype-decl", true);
 			doc = reader.read(new StringReader(xml));
 			Element root = doc.getRootElement();
 			map.put(root.attribute("id").getValue(), root.attribute("label").getValue());

From 7a73010acdd93ca7f7d470c8f732315b54482acc Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 19 Oct 2021 11:59:16 +0200
Subject: [PATCH 086/106] WIP: worflow nodes for including Scholexplorer
 records in the RAW graph

---
 .../oa/graph/raw/CopyHdfsOafApplication.java  | 143 ++++++++++++++++++
 .../raw/MigrateHdfsMdstoresApplication.java   |  26 ----
 .../common/AbstractMigrationApplication.java  |  47 ++++++
 .../oa/graph/copy_hdfs_oaf_parameters.json    |  38 +++++
 .../oa/graph/raw_all/oozie_app/workflow.xml   |  27 ++++
 5 files changed, 255 insertions(+), 26 deletions(-)
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
new file mode 100644
index 0000000000..2e06114751
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -0,0 +1,143 @@
+
+package eu.dnetlib.dhp.oa.graph.raw;
+
+import com.clearspring.analytics.util.Lists;
+import com.fasterxml.jackson.databind.ObjectMapper;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
+import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
+import eu.dnetlib.dhp.schema.common.EntityType;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import eu.dnetlib.dhp.utils.ISLookupClientFactory;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.JavaSparkContext;
+import org.apache.spark.api.java.function.FilterFunction;
+import org.apache.spark.api.java.function.FlatMapFunction;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.util.*;
+
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+public class CopyHdfsOafApplication extends AbstractMigrationApplication {
+
+	private static final Logger log = LoggerFactory.getLogger(CopyHdfsOafApplication.class);
+
+	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
+
+	public static void main(final String[] args) throws Exception {
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
+			IOUtils
+				.toString(
+					CopyHdfsOafApplication.class
+						.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json")));
+		parser.parseArgument(args);
+
+		final Boolean isSparkSessionManaged = Optional
+			.ofNullable(parser.get("isSparkSessionManaged"))
+			.map(Boolean::valueOf)
+			.orElse(Boolean.TRUE);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		final String mdstoreManagerUrl = parser.get("mdstoreManagerUrl");
+		log.info("mdstoreManagerUrl: {}", mdstoreManagerUrl);
+
+		final String mdFormat = parser.get("mdFormat");
+		log.info("mdFormat: {}", mdFormat);
+
+		final String mdLayout = parser.get("mdLayout");
+		log.info("mdLayout: {}", mdLayout);
+
+		final String mdInterpretation = parser.get("mdInterpretation");
+		log.info("mdInterpretation: {}", mdInterpretation);
+
+		final String hdfsPath = parser.get("hdfsPath");
+		log.info("hdfsPath: {}", hdfsPath);
+
+		final String isLookupUrl = parser.get("isLookupUrl");
+		log.info("isLookupUrl: {}", isLookupUrl);
+
+		final ISLookUpService isLookupService = ISLookupClientFactory.getLookUpService(isLookupUrl);
+		final VocabularyGroup vocs = VocabularyGroup.loadVocsFromIS(isLookupService);
+
+		final Set<String> paths = mdstorePaths(mdstoreManagerUrl, mdFormat, mdLayout, mdInterpretation);
+
+		final SparkConf conf = new SparkConf();
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, vocs, hdfsPath, paths));
+	}
+
+	public static void processPaths(final SparkSession spark,
+		final VocabularyGroup vocs,
+		final String outputPath,
+		final Set<String> paths) {
+
+		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
+
+		log.info("Found {} mdstores", paths.size());
+		paths.forEach(log::info);
+
+		final String[] validPaths = paths
+			.stream()
+			.filter(p -> HdfsSupport.exists(p, sc.hadoopConfiguration()))
+			.toArray(String[]::new);
+		log.info("Non empty mdstores {}", validPaths.length);
+
+		if (validPaths.length > 0) {
+			// load the dataset
+			Dataset<Oaf> oaf = spark
+					.read()
+					.load(validPaths)
+					.as(Encoders.kryo(Oaf.class));
+
+			// dispatch each entity type individually in the respective graph subdirectory in append mode
+			for(Map.Entry<EntityType, Class> e : ModelSupport.entityTypes.entrySet()) {
+				oaf
+					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey().toString()))
+					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.bean(e.getValue()))
+					.write()
+					.option("compression", "gzip")
+					.mode(SaveMode.Append)
+					.text(outputPath + "/" + e.getKey());
+			}
+
+			oaf
+					.flatMap((FlatMapFunction<Oaf, Relation>) o -> {
+						Relation rel = (Relation) o;
+						List<Relation> rels = Lists.newArrayList();
+						rels.add(getInverse(rel, vocs));
+
+						return rels.iterator();
+					}, Encoders.bean(Relation.class));
+		}
+	}
+
+	private static Relation getInverse(Relation rel, VocabularyGroup vocs) {
+		final Relation inverse = new Relation();
+
+		inverse.setProperties(rel.getProperties());
+		inverse.setValidated(rel.getValidated());
+		inverse.setValidationDate(rel.getValidationDate());
+		inverse.setCollectedfrom(rel.getCollectedfrom());
+		inverse.setDataInfo(rel.getDataInfo());
+		inverse.setLastupdatetimestamp(rel.getLastupdatetimestamp());
+
+		inverse.setSource(rel.getTarget());
+		inverse.setTarget(rel.getSource());
+		inverse.setRelType(rel.getRelType());
+		inverse.setSubRelType(rel.getSubRelType());
+
+		return inverse;
+	}
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateHdfsMdstoresApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateHdfsMdstoresApplication.java
index 4110bd8067..6c72e4dfc4 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateHdfsMdstoresApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/MigrateHdfsMdstoresApplication.java
@@ -135,30 +135,4 @@ public class MigrateHdfsMdstoresApplication extends AbstractMigrationApplication
 		}
 	}
 
-	private static Set<String> mdstorePaths(final String mdstoreManagerUrl,
-		final String format,
-		final String layout,
-		final String interpretation) throws IOException {
-		final String url = mdstoreManagerUrl + "/mdstores/";
-		final ObjectMapper objectMapper = new ObjectMapper();
-
-		final HttpGet req = new HttpGet(url);
-
-		try (final CloseableHttpClient client = HttpClients.createDefault()) {
-			try (final CloseableHttpResponse response = client.execute(req)) {
-				final String json = IOUtils.toString(response.getEntity().getContent());
-				final MDStoreWithInfo[] mdstores = objectMapper.readValue(json, MDStoreWithInfo[].class);
-				return Arrays
-					.stream(mdstores)
-					.filter(md -> md.getFormat().equalsIgnoreCase(format))
-					.filter(md -> md.getLayout().equalsIgnoreCase(layout))
-					.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
-					.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
-					.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
-					.filter(md -> md.getSize() > 0)
-					.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
-					.collect(Collectors.toSet());
-			}
-		}
-	}
 }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
index 5d32fe926d..7c88dbd9d9 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
@@ -3,8 +3,14 @@ package eu.dnetlib.dhp.oa.graph.raw.common;
 
 import java.io.Closeable;
 import java.io.IOException;
+import java.util.Arrays;
+import java.util.Set;
 import java.util.concurrent.atomic.AtomicInteger;
+import java.util.stream.Collectors;
 
+import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 import org.apache.hadoop.conf.Configuration;
@@ -16,6 +22,10 @@ import com.fasterxml.jackson.core.JsonProcessingException;
 import com.fasterxml.jackson.databind.ObjectMapper;
 
 import eu.dnetlib.dhp.schema.oaf.Oaf;
+import org.apache.http.client.methods.CloseableHttpResponse;
+import org.apache.http.client.methods.HttpGet;
+import org.apache.http.impl.client.CloseableHttpClient;
+import org.apache.http.impl.client.HttpClients;
 
 public class AbstractMigrationApplication implements Closeable {
 
@@ -47,6 +57,43 @@ public class AbstractMigrationApplication implements Closeable {
 				SequenceFile.Writer.valueClass(Text.class));
 	}
 
+	/**
+	 * Retrieves from the metadata store manager application the list of paths associated with mdstores characterized
+	 * by he given format, layout, interpretation
+	 * @param mdstoreManagerUrl the URL of the mdstore manager service
+	 * @param format the mdstore format
+	 * @param layout the mdstore layout
+	 * @param interpretation the mdstore interpretation
+	 * @return the set of hdfs paths
+	 * @throws IOException in case of HTTP communication issues
+	 */
+	protected static Set<String> mdstorePaths(final String mdstoreManagerUrl,
+											final String format,
+											final String layout,
+											final String interpretation) throws IOException {
+		final String url = mdstoreManagerUrl + "/mdstores/";
+		final ObjectMapper objectMapper = new ObjectMapper();
+
+		final HttpGet req = new HttpGet(url);
+
+		try (final CloseableHttpClient client = HttpClients.createDefault()) {
+			try (final CloseableHttpResponse response = client.execute(req)) {
+				final String json = IOUtils.toString(response.getEntity().getContent());
+				final MDStoreWithInfo[] mdstores = objectMapper.readValue(json, MDStoreWithInfo[].class);
+				return Arrays
+						.stream(mdstores)
+						.filter(md -> md.getFormat().equalsIgnoreCase(format))
+						.filter(md -> md.getLayout().equalsIgnoreCase(layout))
+						.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
+						.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
+						.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
+						.filter(md -> md.getSize() > 0)
+						.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
+						.collect(Collectors.toSet());
+			}
+		}
+	}
+
 	private Configuration getConf() {
 		return new Configuration();
 		/*
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
new file mode 100644
index 0000000000..1e862198f1
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
@@ -0,0 +1,38 @@
+[
+	{
+		"paramName": "p",
+		"paramLongName": "hdfsPath",
+		"paramDescription": "the path where storing the sequential file",
+		"paramRequired": true
+	},
+	{
+		"paramName": "u",
+		"paramLongName": "mdstoreManagerUrl",
+		"paramDescription": "the MdstoreManager url",
+		"paramRequired": true
+	},
+	{
+		"paramName": "f",
+		"paramLongName": "mdFormat",
+		"paramDescription": "metadata format",
+		"paramRequired": true
+	},
+	{
+		"paramName": "l",
+		"paramLongName": "mdLayout",
+		"paramDescription": "metadata layout",
+		"paramRequired": true
+	},
+	{
+		"paramName": "i",
+		"paramLongName": "mdInterpretation",
+		"paramDescription": "metadata interpretation",
+		"paramRequired": true
+	},
+	{
+		"paramName": "isu",
+		"paramLongName": "isLookupUrl",
+		"paramDescription": "the url of the ISLookupService",
+		"paramRequired": true
+	}
+]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index 321ca40909..563923a5a7 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -544,6 +544,33 @@
             <arg>--sourcePath</arg><arg>${workingDir}/entities</arg>
             <arg>--graphRawPath</arg><arg>${workingDir}/graph_raw</arg>
         </spark>
+        <ok to="Import_oaf_store_graph"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="Import_oaf_store_graph">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn</master>
+            <mode>cluster</mode>
+            <name>ImportOAF_hdfs_graph</name>
+            <class>eu.dnetlib.dhp.oa.graph.raw.CopyHdfsOafApplication</class>
+            <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory ${sparkExecutorMemory}
+                --executor-cores ${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--hdfsPath</arg><arg>${workingDir}/graph_raw</arg>
+            <arg>--mdstoreManagerUrl</arg><arg>${mdstoreManagerUrl}</arg>
+            <arg>--mdFormat</arg><arg>OAF</arg>
+            <arg>--mdLayout</arg><arg>store</arg>
+            <arg>--mdInterpretation</arg><arg>graph</arg>
+            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
+        </spark>
         <ok to="wait_graphs"/>
         <error to="Kill"/>
     </action>

From f8329bc11052f327336089b70a85ccbe90bca511 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 19 Oct 2021 15:24:22 +0200
Subject: [PATCH 087/106] since dhp-schemas changed, introducing new Relation
 inverse model, this class has been updated

---
 .../java/eu/dnetlib/dhp/blacklist/ReadBlacklistFromDB.java    | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dhp-workflows/dhp-blacklist/src/main/java/eu/dnetlib/dhp/blacklist/ReadBlacklistFromDB.java b/dhp-workflows/dhp-blacklist/src/main/java/eu/dnetlib/dhp/blacklist/ReadBlacklistFromDB.java
index 38ffd28fef..7d0d6b0b86 100644
--- a/dhp-workflows/dhp-blacklist/src/main/java/eu/dnetlib/dhp/blacklist/ReadBlacklistFromDB.java
+++ b/dhp-workflows/dhp-blacklist/src/main/java/eu/dnetlib/dhp/blacklist/ReadBlacklistFromDB.java
@@ -91,8 +91,8 @@ public class ReadBlacklistFromDB implements Closeable {
 
 			String encoding = rs.getString("relationship");
 			RelationInverse ri = ModelSupport.relationInverseMap.get(encoding);
-			direct.setRelClass(ri.getRelation());
-			inverse.setRelClass(ri.getInverse());
+			direct.setRelClass(ri.getRelClass());
+			inverse.setRelClass(ri.getInverseRelClass());
 			direct.setRelType(ri.getRelType());
 			inverse.setRelType(ri.getRelType());
 			direct.setSubRelType(ri.getSubReltype());

From c9870c5122d2d59ece2a4500dc2e75490c176202 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 19 Oct 2021 15:24:59 +0200
Subject: [PATCH 088/106] code formatted

---
 .../oa/provision/SolrConfigExploreTest.java   | 154 +++++++++---------
 .../dhp/oa/provision/SolrConfigTest.java      | 150 ++++++++---------
 .../dhp/oa/provision/SolrExploreTest.java     | 128 +++++++--------
 3 files changed, 216 insertions(+), 216 deletions(-)

diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigExploreTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigExploreTest.java
index 9bc2924c3e..3beca7e7e2 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigExploreTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigExploreTest.java
@@ -25,102 +25,102 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 @ExtendWith(MockitoExtension.class)
 public class SolrConfigExploreTest extends SolrExploreTest {
 
-    protected static SparkSession spark;
+	protected static SparkSession spark;
 
-    private static final Integer batchSize = 100;
+	private static final Integer batchSize = 100;
 
-    @Mock
-    private ISLookUpService isLookUpService;
+	@Mock
+	private ISLookUpService isLookUpService;
 
-    @Mock
-    private ISLookupClient isLookupClient;
+	@Mock
+	private ISLookupClient isLookupClient;
 
-    @BeforeEach
-    public void prepareMocks() throws ISLookUpException, IOException {
-        isLookupClient.setIsLookup(isLookUpService);
+	@BeforeEach
+	public void prepareMocks() throws ISLookUpException, IOException {
+		isLookupClient.setIsLookup(isLookUpService);
 
-        int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
+		int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
 
-        Mockito
-                .when(isLookupClient.getDsId(Mockito.anyString()))
-                .thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
-        Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
-        Mockito
-                .when(isLookupClient.getLayoutSource(Mockito.anyString()))
-                .thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
-        Mockito
-                .when(isLookupClient.getLayoutTransformer())
-                .thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
-    }
+		Mockito
+			.when(isLookupClient.getDsId(Mockito.anyString()))
+			.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
+		Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
+		Mockito
+			.when(isLookupClient.getLayoutSource(Mockito.anyString()))
+			.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
+		Mockito
+			.when(isLookupClient.getLayoutTransformer())
+			.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
+	}
 
-    @BeforeAll
-    public static void before() {
+	@BeforeAll
+	public static void before() {
 
-        SparkConf conf = new SparkConf();
-        conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
-        conf.registerKryoClasses(new Class[] {
-                SerializableSolrInputDocument.class
-        });
+		SparkConf conf = new SparkConf();
+		conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
+		conf.registerKryoClasses(new Class[] {
+			SerializableSolrInputDocument.class
+		});
 
-        conf.setMaster("local[1]");
-        conf.set("spark.driver.host", "localhost");
-        conf.set("hive.metastore.local", "true");
-        conf.set("spark.ui.enabled", "false");
-        conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
+		conf.setMaster("local[1]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
 
-        spark = SparkSession
-                .builder()
-                .appName(XmlIndexingJobTest.class.getSimpleName())
-                .config(conf)
-                .getOrCreate();
+		spark = SparkSession
+			.builder()
+			.appName(XmlIndexingJobTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
 
+	}
 
-    }
+	@AfterAll
+	public static void tearDown() {
+		spark.stop();
+	}
 
-    @AfterAll
-    public static void tearDown() {
-        spark.stop();
-    }
+	@Test
+	public void testSolrConfig() throws Exception {
 
-    @Test
-    public void testSolrConfig() throws Exception {
+		String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
 
-        String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
+		new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null)
+			.run(isLookupClient);
+		Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
 
-        new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null).run(isLookupClient);
-        Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
+		String[] queryStrings = {
+			"cancer",
+			"graph",
+			"graphs"
+		};
 
-        String[] queryStrings = {
-                "cancer",
-                "graph",
-                "graphs"
-        };
+		for (String q : queryStrings) {
+			SolrQuery query = new SolrQuery();
+			query.setRequestHandler("/exploreSearch");
+			query.add(CommonParams.Q, q);
+			query.set("debugQuery", "on");
 
-        for (String q : queryStrings) {
-            SolrQuery query = new SolrQuery();
-            query.setRequestHandler("/exploreSearch");
-            query.add(CommonParams.Q, q);
-            query.set("debugQuery", "on");
-
-            log.info("Submit query to Solr with params: {}", query.toString());
-            QueryResponse rsp = miniCluster.getSolrClient().query(query);
+			log.info("Submit query to Solr with params: {}", query.toString());
+			QueryResponse rsp = miniCluster.getSolrClient().query(query);
 //            System.out.println(rsp.getHighlighting());
 //            System.out.println(rsp.getExplainMap());
 
-            for (SolrDocument doc : rsp.getResults()) {
-                System.out.println(
-                        doc.get("score") + "\t" +
-                        doc.get("__indexrecordidentifier") + "\t" +
-                        doc.get("resultidentifier") + "\t" +
-                        doc.get("resultauthor") + "\t" +
-                        doc.get("resultacceptanceyear") + "\t" +
-                        doc.get("resultsubject") + "\t" +
-                        doc.get("resulttitle") + "\t" +
-                        doc.get("relprojectname") + "\t" +
-                        doc.get("resultdescription") + "\t" +
-                        doc.get("__all") + "\t"
-                );
-            }
-        }
-    }
+			for (SolrDocument doc : rsp.getResults()) {
+				System.out
+					.println(
+						doc.get("score") + "\t" +
+							doc.get("__indexrecordidentifier") + "\t" +
+							doc.get("resultidentifier") + "\t" +
+							doc.get("resultauthor") + "\t" +
+							doc.get("resultacceptanceyear") + "\t" +
+							doc.get("resultsubject") + "\t" +
+							doc.get("resulttitle") + "\t" +
+							doc.get("relprojectname") + "\t" +
+							doc.get("resultdescription") + "\t" +
+							doc.get("__all") + "\t");
+			}
+		}
+	}
 }
diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigTest.java
index e20ecf1523..ab98b1da29 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrConfigTest.java
@@ -34,98 +34,98 @@ import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 @ExtendWith(MockitoExtension.class)
 public class SolrConfigTest extends SolrTest {
 
-    protected static SparkSession spark;
+	protected static SparkSession spark;
 
-    private static final Integer batchSize = 100;
+	private static final Integer batchSize = 100;
 
-    @Mock
-    private ISLookUpService isLookUpService;
+	@Mock
+	private ISLookUpService isLookUpService;
 
-    @Mock
-    private ISLookupClient isLookupClient;
+	@Mock
+	private ISLookupClient isLookupClient;
 
-    @BeforeEach
-    public void prepareMocks() throws ISLookUpException, IOException {
-        isLookupClient.setIsLookup(isLookUpService);
+	@BeforeEach
+	public void prepareMocks() throws ISLookUpException, IOException {
+		isLookupClient.setIsLookup(isLookUpService);
 
-        int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
+		int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
 
-        Mockito
-                .when(isLookupClient.getDsId(Mockito.anyString()))
-                .thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
-        Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
-        Mockito
-                .when(isLookupClient.getLayoutSource(Mockito.anyString()))
-                .thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
-        Mockito
-                .when(isLookupClient.getLayoutTransformer())
-                .thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
-    }
+		Mockito
+			.when(isLookupClient.getDsId(Mockito.anyString()))
+			.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
+		Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
+		Mockito
+			.when(isLookupClient.getLayoutSource(Mockito.anyString()))
+			.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
+		Mockito
+			.when(isLookupClient.getLayoutTransformer())
+			.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
+	}
 
-    @BeforeAll
-    public static void before() {
+	@BeforeAll
+	public static void before() {
 
-        SparkConf conf = new SparkConf();
-        conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
-        conf.registerKryoClasses(new Class[] {
-                SerializableSolrInputDocument.class
-        });
+		SparkConf conf = new SparkConf();
+		conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
+		conf.registerKryoClasses(new Class[] {
+			SerializableSolrInputDocument.class
+		});
 
-        conf.setMaster("local[1]");
-        conf.set("spark.driver.host", "localhost");
-        conf.set("hive.metastore.local", "true");
-        conf.set("spark.ui.enabled", "false");
-        conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
+		conf.setMaster("local[1]");
+		conf.set("spark.driver.host", "localhost");
+		conf.set("hive.metastore.local", "true");
+		conf.set("spark.ui.enabled", "false");
+		conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
 
-        spark = SparkSession
-                .builder()
-                .appName(XmlIndexingJobTest.class.getSimpleName())
-                .config(conf)
-                .getOrCreate();
+		spark = SparkSession
+			.builder()
+			.appName(XmlIndexingJobTest.class.getSimpleName())
+			.config(conf)
+			.getOrCreate();
 
+	}
 
-    }
+	@AfterAll
+	public static void tearDown() {
+		spark.stop();
+	}
 
-    @AfterAll
-    public static void tearDown() {
-        spark.stop();
-    }
+	@Test
+	public void testSolrConfig() throws Exception {
 
-    @Test
-    public void testSolrConfig() throws Exception {
+		String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
 
-        String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
+		new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null)
+			.run(isLookupClient);
+		Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
 
-        new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null).run(isLookupClient);
-        Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
+		String[] queryStrings = {
+			"cancer",
+			"graph",
+			"graphs"
+		};
 
-        String[] queryStrings = {
-            "cancer",
-            "graph",
-            "graphs"
-        };
+		for (String q : queryStrings) {
+			SolrQuery query = new SolrQuery();
+			query.add(CommonParams.Q, q);
 
-        for (String q : queryStrings) {
-            SolrQuery query = new SolrQuery();
-            query.add(CommonParams.Q, q);
+			log.info("Submit query to Solr with params: {}", query.toString());
+			QueryResponse rsp = miniCluster.getSolrClient().query(query);
 
-            log.info("Submit query to Solr with params: {}", query.toString());
-            QueryResponse rsp = miniCluster.getSolrClient().query(query);
-
-            for (SolrDocument doc : rsp.getResults()) {
-                System.out.println(
-                        doc.get("score") + "\t" +
-                        doc.get("__indexrecordidentifier") + "\t" +
-                        doc.get("resultidentifier") + "\t" +
-                        doc.get("resultauthor") + "\t" +
-                        doc.get("resultacceptanceyear") + "\t" +
-                        doc.get("resultsubject") + "\t" +
-                        doc.get("resulttitle") + "\t" +
-                        doc.get("relprojectname") + "\t" +
-                        doc.get("resultdescription") + "\t" +
-                        doc.get("__all") + "\t"
-                );
-            }
-        }
-    }
+			for (SolrDocument doc : rsp.getResults()) {
+				System.out
+					.println(
+						doc.get("score") + "\t" +
+							doc.get("__indexrecordidentifier") + "\t" +
+							doc.get("resultidentifier") + "\t" +
+							doc.get("resultauthor") + "\t" +
+							doc.get("resultacceptanceyear") + "\t" +
+							doc.get("resultsubject") + "\t" +
+							doc.get("resulttitle") + "\t" +
+							doc.get("relprojectname") + "\t" +
+							doc.get("resultdescription") + "\t" +
+							doc.get("__all") + "\t");
+			}
+		}
+	}
 }
diff --git a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrExploreTest.java b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrExploreTest.java
index b86fd8ac83..34a9465a72 100644
--- a/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrExploreTest.java
+++ b/dhp-workflows/dhp-graph-provision/src/test/java/eu/dnetlib/dhp/oa/provision/SolrExploreTest.java
@@ -23,87 +23,87 @@ import org.slf4j.LoggerFactory;
 
 public abstract class SolrExploreTest {
 
-    protected static final Logger log = LoggerFactory.getLogger(SolrTest.class);
+	protected static final Logger log = LoggerFactory.getLogger(SolrTest.class);
 
-    protected static final String FORMAT = "test";
-    protected static final String DEFAULT_COLLECTION = FORMAT + "-index-openaire";
-    protected static final String CONFIG_NAME = "testConfig";
+	protected static final String FORMAT = "test";
+	protected static final String DEFAULT_COLLECTION = FORMAT + "-index-openaire";
+	protected static final String CONFIG_NAME = "testConfig";
 
-    protected static MiniSolrCloudCluster miniCluster;
+	protected static MiniSolrCloudCluster miniCluster;
 
-    @TempDir
-    public static Path workingDir;
+	@TempDir
+	public static Path workingDir;
 
-    @BeforeAll
-    public static void setup() throws Exception {
+	@BeforeAll
+	public static void setup() throws Exception {
 
-        // random unassigned HTTP port
-        final int jettyPort = 0;
-        final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
+		// random unassigned HTTP port
+		final int jettyPort = 0;
+		final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
 
-        log.info(String.format("working directory: %s", workingDir.toString()));
-        System.setProperty("solr.log.dir", workingDir.resolve("logs").toString());
+		log.info(String.format("working directory: %s", workingDir.toString()));
+		System.setProperty("solr.log.dir", workingDir.resolve("logs").toString());
 
-        // create a MiniSolrCloudCluster instance
-        miniCluster = new MiniSolrCloudCluster(2, workingDir.resolve("solr"), jettyConfig);
+		// create a MiniSolrCloudCluster instance
+		miniCluster = new MiniSolrCloudCluster(2, workingDir.resolve("solr"), jettyConfig);
 
-        // Upload Solr configuration directory to ZooKeeper
-        String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/exploreTestConfig";
-        File configDir = new File(solrZKConfigDir);
+		// Upload Solr configuration directory to ZooKeeper
+		String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/exploreTestConfig";
+		File configDir = new File(solrZKConfigDir);
 
-        miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
+		miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
 
-        // override settings in the solrconfig include
-        System.setProperty("solr.tests.maxBufferedDocs", "100000");
-        System.setProperty("solr.tests.maxIndexingThreads", "-1");
-        System.setProperty("solr.tests.ramBufferSizeMB", "100");
+		// override settings in the solrconfig include
+		System.setProperty("solr.tests.maxBufferedDocs", "100000");
+		System.setProperty("solr.tests.maxIndexingThreads", "-1");
+		System.setProperty("solr.tests.ramBufferSizeMB", "100");
 
-        // use non-test classes so RandomizedRunner isn't necessary
-        System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
-        System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
-        System.setProperty("solr.lock.type", "single");
+		// use non-test classes so RandomizedRunner isn't necessary
+		System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
+		System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
+		System.setProperty("solr.lock.type", "single");
 
-        log.info(new ConfigSetAdminRequest.List().process(miniCluster.getSolrClient()).toString());
-        log
-                .info(
-                        CollectionAdminRequest.ClusterStatus
-                                .getClusterStatus()
-                                .process(miniCluster.getSolrClient())
-                                .toString());
+		log.info(new ConfigSetAdminRequest.List().process(miniCluster.getSolrClient()).toString());
+		log
+			.info(
+				CollectionAdminRequest.ClusterStatus
+					.getClusterStatus()
+					.process(miniCluster.getSolrClient())
+					.toString());
 
-        NamedList<Object> res = createCollection(
-                miniCluster.getSolrClient(), DEFAULT_COLLECTION, 4, 2, 20, CONFIG_NAME);
-        res.forEach(o -> log.info(o.toString()));
+		NamedList<Object> res = createCollection(
+			miniCluster.getSolrClient(), DEFAULT_COLLECTION, 4, 2, 20, CONFIG_NAME);
+		res.forEach(o -> log.info(o.toString()));
 
-        miniCluster.getSolrClient().setDefaultCollection(DEFAULT_COLLECTION);
+		miniCluster.getSolrClient().setDefaultCollection(DEFAULT_COLLECTION);
 
-        log
-                .info(
-                        CollectionAdminRequest.ClusterStatus
-                                .getClusterStatus()
-                                .process(miniCluster.getSolrClient())
-                                .toString());
+		log
+			.info(
+				CollectionAdminRequest.ClusterStatus
+					.getClusterStatus()
+					.process(miniCluster.getSolrClient())
+					.toString());
 
-    }
+	}
 
-    @AfterAll
-    public static void shutDown() throws Exception {
-        miniCluster.shutdown();
-        FileUtils.deleteDirectory(workingDir.toFile());
-    }
+	@AfterAll
+	public static void shutDown() throws Exception {
+		miniCluster.shutdown();
+		FileUtils.deleteDirectory(workingDir.toFile());
+	}
 
-    protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
-                                                        int replicationFactor, int maxShardsPerNode, String configName) throws Exception {
-        ModifiableSolrParams modParams = new ModifiableSolrParams();
-        modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
-        modParams.set("name", name);
-        modParams.set("numShards", numShards);
-        modParams.set("replicationFactor", replicationFactor);
-        modParams.set("collection.configName", configName);
-        modParams.set("maxShardsPerNode", maxShardsPerNode);
-        QueryRequest request = new QueryRequest(modParams);
-        request.setPath("/admin/collections");
-        return client.request(request);
-    }
+	protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
+		int replicationFactor, int maxShardsPerNode, String configName) throws Exception {
+		ModifiableSolrParams modParams = new ModifiableSolrParams();
+		modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
+		modParams.set("name", name);
+		modParams.set("numShards", numShards);
+		modParams.set("replicationFactor", replicationFactor);
+		modParams.set("collection.configName", configName);
+		modParams.set("maxShardsPerNode", maxShardsPerNode);
+		QueryRequest request = new QueryRequest(modParams);
+		request.setPath("/admin/collections");
+		return client.request(request);
+	}
 
 }

From 98f37c8d81222bce8cb4870850e65dcf52fc375a Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 19 Oct 2021 16:14:40 +0200
Subject: [PATCH 089/106] WIP: worflow nodes for including Scholexplorer
 records in the RAW graph

---
 .../dhp/oa/graph/raw/CopyHdfsOafApplication.java    | 13 ++-----------
 1 file changed, 2 insertions(+), 11 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index 2e06114751..c0accd25a0 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -101,24 +101,15 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 					.as(Encoders.kryo(Oaf.class));
 
 			// dispatch each entity type individually in the respective graph subdirectory in append mode
-			for(Map.Entry<EntityType, Class> e : ModelSupport.entityTypes.entrySet()) {
+			for(Map.Entry<String, Class> e : ModelSupport.oafTypes.entrySet()) {
 				oaf
-					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey().toString()))
+					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey()))
 					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.bean(e.getValue()))
 					.write()
 					.option("compression", "gzip")
 					.mode(SaveMode.Append)
 					.text(outputPath + "/" + e.getKey());
 			}
-
-			oaf
-					.flatMap((FlatMapFunction<Oaf, Relation>) o -> {
-						Relation rel = (Relation) o;
-						List<Relation> rels = Lists.newArrayList();
-						rels.add(getInverse(rel, vocs));
-
-						return rels.iterator();
-					}, Encoders.bean(Relation.class));
 		}
 	}
 

From 512e7b01707690d4539fad1d444da92055678c5e Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Tue, 19 Oct 2021 16:19:29 +0200
Subject: [PATCH 090/106] code formatting

---
 .../oa/graph/raw/CopyHdfsOafApplication.java  | 38 ++++++++++---------
 .../common/AbstractMigrationApplication.java  | 36 +++++++++---------
 2 files changed, 38 insertions(+), 36 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index c0accd25a0..4cff88d820 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -1,18 +1,10 @@
 
 package eu.dnetlib.dhp.oa.graph.raw;
 
-import com.clearspring.analytics.util.Lists;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.common.HdfsSupport;
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
-import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
-import eu.dnetlib.dhp.schema.common.EntityType;
-import eu.dnetlib.dhp.schema.common.ModelSupport;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.utils.ISLookupClientFactory;
-import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+
+import java.util.*;
+
 import org.apache.commons.io.IOUtils;
 import org.apache.spark.SparkConf;
 import org.apache.spark.api.java.JavaSparkContext;
@@ -26,9 +18,19 @@ import org.apache.spark.sql.SparkSession;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-import java.util.*;
+import com.clearspring.analytics.util.Lists;
+import com.fasterxml.jackson.databind.ObjectMapper;
 
-import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.common.HdfsSupport;
+import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
+import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
+import eu.dnetlib.dhp.schema.common.EntityType;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import eu.dnetlib.dhp.utils.ISLookupClientFactory;
+import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
 
 public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 
@@ -96,12 +98,12 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 		if (validPaths.length > 0) {
 			// load the dataset
 			Dataset<Oaf> oaf = spark
-					.read()
-					.load(validPaths)
-					.as(Encoders.kryo(Oaf.class));
+				.read()
+				.load(validPaths)
+				.as(Encoders.kryo(Oaf.class));
 
 			// dispatch each entity type individually in the respective graph subdirectory in append mode
-			for(Map.Entry<String, Class> e : ModelSupport.oafTypes.entrySet()) {
+			for (Map.Entry<String, Class> e : ModelSupport.oafTypes.entrySet()) {
 				oaf
 					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey()))
 					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.bean(e.getValue()))
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
index 7c88dbd9d9..8cd495e08a 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
@@ -8,7 +8,6 @@ import java.util.Set;
 import java.util.concurrent.atomic.AtomicInteger;
 import java.util.stream.Collectors;
 
-import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.logging.Log;
@@ -17,16 +16,17 @@ import org.apache.hadoop.conf.Configuration;
 import org.apache.hadoop.fs.Path;
 import org.apache.hadoop.io.SequenceFile;
 import org.apache.hadoop.io.Text;
-
-import com.fasterxml.jackson.core.JsonProcessingException;
-import com.fasterxml.jackson.databind.ObjectMapper;
-
-import eu.dnetlib.dhp.schema.oaf.Oaf;
 import org.apache.http.client.methods.CloseableHttpResponse;
 import org.apache.http.client.methods.HttpGet;
 import org.apache.http.impl.client.CloseableHttpClient;
 import org.apache.http.impl.client.HttpClients;
 
+import com.fasterxml.jackson.core.JsonProcessingException;
+import com.fasterxml.jackson.databind.ObjectMapper;
+
+import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
+import eu.dnetlib.dhp.schema.oaf.Oaf;
+
 public class AbstractMigrationApplication implements Closeable {
 
 	private final AtomicInteger counter = new AtomicInteger(0);
@@ -68,9 +68,9 @@ public class AbstractMigrationApplication implements Closeable {
 	 * @throws IOException in case of HTTP communication issues
 	 */
 	protected static Set<String> mdstorePaths(final String mdstoreManagerUrl,
-											final String format,
-											final String layout,
-											final String interpretation) throws IOException {
+		final String format,
+		final String layout,
+		final String interpretation) throws IOException {
 		final String url = mdstoreManagerUrl + "/mdstores/";
 		final ObjectMapper objectMapper = new ObjectMapper();
 
@@ -81,15 +81,15 @@ public class AbstractMigrationApplication implements Closeable {
 				final String json = IOUtils.toString(response.getEntity().getContent());
 				final MDStoreWithInfo[] mdstores = objectMapper.readValue(json, MDStoreWithInfo[].class);
 				return Arrays
-						.stream(mdstores)
-						.filter(md -> md.getFormat().equalsIgnoreCase(format))
-						.filter(md -> md.getLayout().equalsIgnoreCase(layout))
-						.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
-						.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
-						.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
-						.filter(md -> md.getSize() > 0)
-						.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
-						.collect(Collectors.toSet());
+					.stream(mdstores)
+					.filter(md -> md.getFormat().equalsIgnoreCase(format))
+					.filter(md -> md.getLayout().equalsIgnoreCase(layout))
+					.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
+					.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
+					.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
+					.filter(md -> md.getSize() > 0)
+					.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
+					.collect(Collectors.toSet());
 			}
 		}
 	}

From c01dd0c92524c21bfe8f06649a6d75f942ffbcc7 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Wed, 20 Oct 2021 13:55:07 +0200
Subject: [PATCH 091/106] registered oaf model classes for the KryoSerializer

---
 .../eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java    | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index 4cff88d820..25b343c1a2 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -76,6 +76,9 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 		final Set<String> paths = mdstorePaths(mdstoreManagerUrl, mdFormat, mdLayout, mdInterpretation);
 
 		final SparkConf conf = new SparkConf();
+		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
+		conf.registerKryoClasses(ModelSupport.getOafModelClasses());
+
 		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, vocs, hdfsPath, paths));
 	}
 

From 00b78b9c588e0c36264a3cd128419d91b6dd91c4 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Wed, 20 Oct 2021 14:04:45 +0200
Subject: [PATCH 092/106] cleanup: mapping contents in the graph already
 defined in the OAF graph model doesn't require to be aware of the
 vocabularies

---
 .../dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java | 9 +--------
 .../dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json   | 6 ------
 .../dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml  | 1 -
 3 files changed, 1 insertion(+), 15 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index 25b343c1a2..c016e21565 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -67,23 +67,16 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 		final String hdfsPath = parser.get("hdfsPath");
 		log.info("hdfsPath: {}", hdfsPath);
 
-		final String isLookupUrl = parser.get("isLookupUrl");
-		log.info("isLookupUrl: {}", isLookupUrl);
-
-		final ISLookUpService isLookupService = ISLookupClientFactory.getLookUpService(isLookupUrl);
-		final VocabularyGroup vocs = VocabularyGroup.loadVocsFromIS(isLookupService);
-
 		final Set<String> paths = mdstorePaths(mdstoreManagerUrl, mdFormat, mdLayout, mdInterpretation);
 
 		final SparkConf conf = new SparkConf();
 		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
 		conf.registerKryoClasses(ModelSupport.getOafModelClasses());
 
-		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, vocs, hdfsPath, paths));
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, hdfsPath, paths));
 	}
 
 	public static void processPaths(final SparkSession spark,
-		final VocabularyGroup vocs,
 		final String outputPath,
 		final Set<String> paths) {
 
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
index 1e862198f1..1d89017c52 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
@@ -28,11 +28,5 @@
 		"paramLongName": "mdInterpretation",
 		"paramDescription": "metadata interpretation",
 		"paramRequired": true
-	},
-	{
-		"paramName": "isu",
-		"paramLongName": "isLookupUrl",
-		"paramDescription": "the url of the ISLookupService",
-		"paramRequired": true
 	}
 ]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index c4cca52f62..137c69ed83 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -569,7 +569,6 @@
             <arg>--mdFormat</arg><arg>OAF</arg>
             <arg>--mdLayout</arg><arg>store</arg>
             <arg>--mdInterpretation</arg><arg>graph</arg>
-            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
         </spark>
         <ok to="wait_graphs"/>
         <error to="Kill"/>

From 4f8970f8ed73acd2c89c23af6c209d0d4443c59c Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Wed, 20 Oct 2021 14:14:53 +0200
Subject: [PATCH 093/106] [stats] reducing the step22 wait time

---
 .../eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh
index dc19f84b4b..03aa535e10 100644
--- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh
+++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh
@@ -1,4 +1,4 @@
 #!/usr/bin/env bash
 
 curl --request GET $1/cache/updateCache
-sleep 20h
\ No newline at end of file
+sleep 6h
\ No newline at end of file

From ae4e99a4715811e193ee7892f679125cd8dbbdaa Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 20 Oct 2021 17:12:08 +0200
Subject: [PATCH 094/106] Adapted workflow of resolution of PID to work into
 OpenAIRE data workflow

- Added relations in both verse on all Scholexplorer datasources
---
 .../java/eu/dnetlib/dhp/utils/DHPUtils.java   |   9 +
 .../DataciteToOAFTransformation.scala         |  11 +-
 .../GenerateDataciteDatasetSpark.scala        |  19 ++-
 .../dhp/collection/CollectionUtils.scala      |  43 +++++
 .../bio/SparkTransformBioDatabaseToOAF.scala  |   9 +-
 .../dhp/sx/bio/ebi/SparkEBILinksToOaf.scala   |   2 +
 .../collection/oozie_app/config-default.xml   |  23 +++
 .../collection/oozie_app/workflow.xml         |  52 ++++++
 .../datacite/generate_dataset_params.json     |   4 +-
 .../oozie_app/config-default.xml              |  23 +++
 .../transformation/oozie_app/workflow.xml     | 126 ++++++++++++++
 .../resolution/SparkResolveRelation.scala     | 152 +++++++++++++++++
 .../dhp/sx/graph/SparkResolveRelation.scala   | 154 ------------------
 .../resolution}/oozie_app/config-default.xml  |   0
 .../graph/resolution}/oozie_app/workflow.xml  |  34 +---
 .../resolution}/resolve_relations_params.json |   3 +-
 .../sx/graph/scholix/ScholixGraphTest.scala   |   2 +-
 17 files changed, 468 insertions(+), 198 deletions(-)
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml
 create mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
 delete mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/SparkResolveRelation.scala
 rename dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/{sx/graph/resolverelation => oa/graph/resolution}/oozie_app/config-default.xml (100%)
 rename dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/{sx/graph/resolverelation => oa/graph/resolution}/oozie_app/workflow.xml (54%)
 rename dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/{sx/graph => oa/graph/resolution}/resolve_relations_params.json (50%)

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
index 6a86f30df7..c53affbadf 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
@@ -10,6 +10,7 @@ import java.util.Properties;
 import java.util.zip.GZIPInputStream;
 import java.util.zip.GZIPOutputStream;
 
+import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
 import org.apache.commons.codec.binary.Base64;
 import org.apache.commons.codec.binary.Base64OutputStream;
 import org.apache.commons.codec.binary.Hex;
@@ -56,6 +57,14 @@ public class DHPUtils {
 		return String.format("%s::%s", nsPrefix, DHPUtils.md5(originalId));
 	}
 
+
+	public static String generateUnresolvedIdentifier(final String pid, final String pidType) {
+
+		final String cleanedPid = CleaningFunctions.normalizePidValue(pidType, pid);
+
+		return String.format("unresolved::%s::%s", cleanedPid, pidType.toLowerCase().trim());
+	}
+
 	public static String getJPathString(final String jsonPath, final String json) {
 		try {
 			Object o = JsonPath.read(json, jsonPath);
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
index cfdd98d30c..e3729e5b71 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
@@ -325,8 +325,9 @@ object DataciteToOAFTransformation {
       val grantId = m.matcher(awardUri).replaceAll("$2")
       val targetId = s"$p${DHPUtils.md5(grantId)}"
       List(
-        generateRelation(sourceId, targetId, "isProducedBy", DATACITE_COLLECTED_FROM, dataInfo),
-        generateRelation(targetId, sourceId, "produces", DATACITE_COLLECTED_FROM, dataInfo)
+        generateRelation(sourceId, targetId, "isProducedBy", DATACITE_COLLECTED_FROM, dataInfo)
+// REMOVED INVERSE RELATION since there is a specific method that should generate later
+//        generateRelation(targetId, sourceId, "produces", DATACITE_COLLECTED_FROM, dataInfo)
       )
     }
     else
@@ -580,11 +581,11 @@ object DataciteToOAFTransformation {
         rel.setProperties(List(dateProps).asJava)
 
         rel.setSource(id)
-        rel.setTarget(s"unresolved::${r.relatedIdentifier}::${r.relatedIdentifierType}")
+        rel.setTarget(DHPUtils.generateUnresolvedIdentifier(r.relatedIdentifier,r.relatedIdentifierType))
         rel.setCollectedfrom(List(DATACITE_COLLECTED_FROM).asJava)
-        rel.getCollectedfrom.asScala.map(c => c.getValue)(collection.breakOut)
+        rel.getCollectedfrom.asScala.map(c => c.getValue).toList
         rel
-      })(collection breakOut)
+      }).toList
   }
 
   def generateDataInfo(trust: String): DataInfo = {
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala
index 2cabc78799..65d00c4d1d 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala
@@ -1,9 +1,13 @@
 package eu.dnetlib.dhp.actionmanager.datacite
 
+import com.fasterxml.jackson.databind.ObjectMapper
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
+import eu.dnetlib.dhp.common.Constants.{MDSTORE_DATA_PATH, MDSTORE_SIZE_PATH}
 import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
-import eu.dnetlib.dhp.schema.mdstore.MetadataRecord
+import eu.dnetlib.dhp.collection.CollectionUtils.fixRelations
+import eu.dnetlib.dhp.schema.mdstore.{MDStoreVersion, MetadataRecord}
 import eu.dnetlib.dhp.schema.oaf.Oaf
+import eu.dnetlib.dhp.utils.DHPUtils.writeHdfsFile
 import eu.dnetlib.dhp.utils.ISLookupClientFactory
 import org.apache.spark.SparkConf
 import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
@@ -21,7 +25,6 @@ object GenerateDataciteDatasetSpark {
     parser.parseArgument(args)
     val master = parser.get("master")
     val sourcePath = parser.get("sourcePath")
-    val targetPath = parser.get("targetPath")
     val exportLinks = "true".equalsIgnoreCase(parser.get("exportLinks"))
     val isLookupUrl: String = parser.get("isLookupUrl")
     log.info("isLookupUrl: {}", isLookupUrl)
@@ -39,10 +42,22 @@ object GenerateDataciteDatasetSpark {
 
     import spark.implicits._
 
+    val mdstoreOutputVersion = parser.get("mdstoreOutputVersion")
+    val mapper = new ObjectMapper()
+    val cleanedMdStoreVersion = mapper.readValue(mdstoreOutputVersion, classOf[MDStoreVersion])
+    val outputBasePath = cleanedMdStoreVersion.getHdfsPath
+
+    log.info("outputBasePath: {}", outputBasePath)
+    val targetPath = s"$outputBasePath/$MDSTORE_DATA_PATH"
+
     spark.read.load(sourcePath).as[DataciteType]
       .filter(d => d.isActive)
       .flatMap(d => DataciteToOAFTransformation.generateOAF(d.json, d.timestamp, d.timestamp, vocabularies, exportLinks))
       .filter(d => d != null)
+      .flatMap(i=> fixRelations(i)).filter(i => i != null)
       .write.mode(SaveMode.Overwrite).save(targetPath)
+
+    val total_items =spark.read.load(targetPath).as[Oaf].count()
+    writeHdfsFile(spark.sparkContext.hadoopConfiguration, s"$total_items", outputBasePath + MDSTORE_SIZE_PATH)
   }
 }
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
new file mode 100644
index 0000000000..e212d7e2ad
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
@@ -0,0 +1,43 @@
+package eu.dnetlib.dhp.collection
+
+import eu.dnetlib.dhp.schema.common.ModelSupport
+import eu.dnetlib.dhp.schema.oaf.{Oaf, OafEntity, Relation}
+
+object CollectionUtils {
+
+  /**
+   * This method in pipeline to the transformation phase,
+   * generates relations in both verse, typically it should be a phase of flatMap
+   *
+   * @param i input OAF
+   * @return
+   * If the input OAF is an entity -> List(i)
+   * If the input OAF is a relation -> List(relation, inverseRelation)
+   *
+   */
+
+  def fixRelations(i: Oaf): List[Oaf] = {
+    if (i.isInstanceOf[OafEntity])
+      return List(i)
+    else {
+      val r: Relation = i.asInstanceOf[Relation]
+      val currentRel = ModelSupport.findRelation(r.getRelClass)
+      if (currentRel != null) {
+
+        // Cleaning relation
+        r.setRelType(currentRel.getRelType)
+        r.setSubRelType(currentRel.getSubReltype)
+        r.setRelClass(currentRel.getRelClass)
+        val inverse = new Relation
+        inverse.setSource(r.getTarget)
+        inverse.setTarget(r.getSource)
+        inverse.setRelType(currentRel.getRelType)
+        inverse.setSubRelType(currentRel.getSubReltype)
+        inverse.setRelClass(currentRel.getInverseRelClass)
+        return List(r, inverse)
+      }
+    }
+    List()
+  }
+
+}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
index 7a62437a36..8ae8285e3f 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/SparkTransformBioDatabaseToOAF.scala
@@ -3,6 +3,7 @@ package eu.dnetlib.dhp.sx.bio
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import eu.dnetlib.dhp.schema.oaf.Oaf
 import BioDBToOAF.ScholixResolved
+import eu.dnetlib.dhp.collection.CollectionUtils
 import org.apache.commons.io.IOUtils
 import org.apache.spark.SparkConf
 import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
@@ -35,13 +36,13 @@ object SparkTransformBioDatabaseToOAF {
     import spark.implicits._
     database.toUpperCase() match {
       case "UNIPROT" =>
-        spark.createDataset(sc.textFile(dbPath).flatMap(i => BioDBToOAF.uniprotToOAF(i))).write.mode(SaveMode.Overwrite).save(targetPath)
+        spark.createDataset(sc.textFile(dbPath).flatMap(i => BioDBToOAF.uniprotToOAF(i))).flatMap(i=> CollectionUtils.fixRelations(i)).filter(i => i != null).write.mode(SaveMode.Overwrite).save(targetPath)
       case "PDB" =>
-        spark.createDataset(sc.textFile(dbPath).flatMap(i => BioDBToOAF.pdbTOOaf(i))).write.mode(SaveMode.Overwrite).save(targetPath)
+        spark.createDataset(sc.textFile(dbPath).flatMap(i => BioDBToOAF.pdbTOOaf(i))).flatMap(i=> CollectionUtils.fixRelations(i)).filter(i => i != null).write.mode(SaveMode.Overwrite).save(targetPath)
       case "SCHOLIX" =>
-        spark.read.load(dbPath).as[ScholixResolved].map(i => BioDBToOAF.scholixResolvedToOAF(i)).write.mode(SaveMode.Overwrite).save(targetPath)
+        spark.read.load(dbPath).as[ScholixResolved].map(i => BioDBToOAF.scholixResolvedToOAF(i)).flatMap(i=> CollectionUtils.fixRelations(i)).filter(i => i != null).write.mode(SaveMode.Overwrite).save(targetPath)
       case "CROSSREF_LINKS" =>
-        spark.createDataset(sc.textFile(dbPath).map(i => BioDBToOAF.crossrefLinksToOaf(i))).write.mode(SaveMode.Overwrite).save(targetPath)
+        spark.createDataset(sc.textFile(dbPath).map(i => BioDBToOAF.crossrefLinksToOaf(i))).flatMap(i=> CollectionUtils.fixRelations(i)).filter(i => i != null).write.mode(SaveMode.Overwrite).save(targetPath)
     }
   }
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
index b19bfc23a5..8da617ca07 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/sx/bio/ebi/SparkEBILinksToOaf.scala
@@ -5,6 +5,7 @@ import eu.dnetlib.dhp.schema.oaf.Oaf
 import eu.dnetlib.dhp.sx.bio.BioDBToOAF
 import eu.dnetlib.dhp.sx.bio.BioDBToOAF.EBILinkItem
 import BioDBToOAF.EBILinkItem
+import eu.dnetlib.dhp.collection.CollectionUtils
 import org.apache.commons.io.IOUtils
 import org.apache.spark.SparkConf
 import org.apache.spark.sql._
@@ -37,6 +38,7 @@ object SparkEBILinksToOaf {
     ebLinks.flatMap(j => BioDBToOAF.parse_ebi_links(j.links))
       .filter(p => BioDBToOAF.EBITargetLinksFilter(p))
       .flatMap(p => BioDBToOAF.convertEBILinksToOaf(p))
+      .flatMap(i=> CollectionUtils.fixRelations(i)).filter(i => i != null)
       .write.mode(SaveMode.Overwrite).save(targetPath)
   }
 }
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml
new file mode 100644
index 0000000000..dd3c32c620
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml
@@ -0,0 +1,23 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml
new file mode 100644
index 0000000000..41a2e22916
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml
@@ -0,0 +1,52 @@
+<workflow-app name="Collect_Datacite" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>mainPath</name>
+            <description>the working path of Datacite stores</description>
+        </property>
+        <property>
+            <name>isLookupUrl</name>
+            <description>The IS lookUp service endopoint</description>
+        </property>
+        <property>
+            <name>blocksize</name>
+            <value>100</value>
+            <description>The request block size</description>
+        </property>
+
+    </parameters>
+
+    <start to="ImportDatacite"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+
+    <action name="ImportDatacite">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>ImportDatacite</name>
+            <class>eu.dnetlib.dhp.actionmanager.datacite.ImportDatacite</class>
+            <jar>dhp-aggregation-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--targetPath</arg><arg>${mainPath}/datacite_update</arg>
+            <arg>--dataciteDumpPath</arg><arg>${mainPath}/datacite_dump</arg>
+            <arg>--namenode</arg><arg>${nameNode}</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+            <arg>--blocksize</arg><arg>${blocksize}</arg>
+        </spark>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+    <end name="End"/>
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json
index 67e7f37dcb..04dc8b942c 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json
@@ -7,8 +7,8 @@
   },
 
   {
-    "paramName": "t",
-    "paramLongName": "targetPath",
+    "paramName": "mo",
+    "paramLongName": "mdstoreOutputVersion",
     "paramDescription": "the target mdstore path",
     "paramRequired": true
   },
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml
new file mode 100644
index 0000000000..dd3c32c620
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml
@@ -0,0 +1,23 @@
+<configuration>
+    <property>
+        <name>jobTracker</name>
+        <value>yarnRM</value>
+    </property>
+    <property>
+        <name>nameNode</name>
+        <value>hdfs://nameservice1</value>
+    </property>
+    <property>
+        <name>oozie.use.system.libpath</name>
+        <value>true</value>
+    </property>
+    <property>
+        <name>oozie.action.sharelib.for.spark</name>
+        <value>spark2</value>
+    </property>
+
+    <property>
+        <name>oozie.launcher.mapreduce.user.classpath.first</name>
+        <value>true</value>
+    </property>
+</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml
new file mode 100644
index 0000000000..aeb824a41b
--- /dev/null
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml
@@ -0,0 +1,126 @@
+<workflow-app name="transform_Datacite" xmlns="uri:oozie:workflow:0.5">
+    <parameters>
+        <property>
+            <name>mainPath</name>
+            <description>the working path of Datacite stores</description>
+        </property>
+        <property>
+            <name>isLookupUrl</name>
+            <description>The IS lookUp service endopoint</description>
+        </property>
+        <property>
+            <name>mdStoreOutputId</name>
+            <description>the identifier of the cleaned MDStore</description>
+        </property>
+        <property>
+            <name>mdStoreManagerURI</name>
+            <description>the path of the cleaned mdstore</description>
+        </property>
+    </parameters>
+
+    <start to="StartTransaction"/>
+
+    <kill name="Kill">
+        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
+    </kill>
+
+    <action name="StartTransaction">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>NEW_VERSION</arg>
+            <arg>--mdStoreID</arg><arg>${mdStoreOutputId}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+            <capture-output/>
+        </java>
+        <ok to="TransformJob"/>
+        <error to="EndReadRollBack"/>
+    </action>
+
+    <action name="TransformJob">
+        <spark xmlns="uri:oozie:spark-action:0.2">
+            <master>yarn-cluster</master>
+            <mode>cluster</mode>
+            <name>TransformJob</name>
+            <class>eu.dnetlib.dhp.actionmanager.datacite.GenerateDataciteDatasetSpark</class>
+            <jar>dhp-aggregation-${projectVersion}.jar</jar>
+            <spark-opts>
+                --executor-memory=${sparkExecutorMemory}
+                --executor-cores=${sparkExecutorCores}
+                --driver-memory=${sparkDriverMemory}
+                --conf spark.sql.shuffle.partitions=3840
+                --conf spark.extraListeners=${spark2ExtraListeners}
+                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
+                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
+                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
+            </spark-opts>
+            <arg>--sourcePath</arg><arg>${mainPath}/datacite_dump</arg>
+            <arg>--mdstoreOutputVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
+            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
+            <arg>--exportLinks</arg><arg>true</arg>
+            <arg>--master</arg><arg>yarn-cluster</arg>
+        </spark>
+        <ok to="CommitVersion"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="CommitVersion">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>COMMIT</arg>
+            <arg>--namenode</arg><arg>${nameNode}</arg>
+            <arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+        </java>
+        <ok to="End"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="EndReadRollBack">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>READ_UNLOCK</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+            <arg>--readMDStoreId</arg><arg>${wf:actionData('BeginRead')['mdStoreReadLockVersion']}</arg>
+            <capture-output/>
+        </java>
+        <ok to="RollBack"/>
+        <error to="Kill"/>
+    </action>
+
+    <action name="RollBack">
+        <java>
+            <configuration>
+                <property>
+                    <name>oozie.launcher.mapreduce.user.classpath.first</name>
+                    <value>true</value>
+                </property>
+            </configuration>
+            <main-class>eu.dnetlib.dhp.aggregation.mdstore.MDStoreActionNode</main-class>
+            <arg>--action</arg><arg>ROLLBACK</arg>
+            <arg>--mdStoreVersion</arg><arg>${wf:actionData('StartTransaction')['mdStoreVersion']}</arg>
+            <arg>--mdStoreManagerURI</arg><arg>${mdStoreManagerURI}</arg>
+        </java>
+        <ok to="Kill"/>
+        <error to="Kill"/>
+    </action>
+
+    <end name="End"/>
+</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
new file mode 100644
index 0000000000..e87f46b00a
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
@@ -0,0 +1,152 @@
+package eu.dnetlib.dhp.oa.graph.resolution
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import eu.dnetlib.dhp.application.ArgumentApplicationParser
+import eu.dnetlib.dhp.common.HdfsSupport
+import eu.dnetlib.dhp.schema.oaf.{Relation, Result}
+import eu.dnetlib.dhp.utils.DHPUtils
+import org.apache.commons.io.IOUtils
+import org.apache.hadoop.fs.{FileSystem, Path}
+import org.apache.spark.SparkConf
+import org.apache.spark.rdd.RDD
+import org.apache.spark.sql._
+import org.json4s
+import org.json4s.DefaultFormats
+import org.json4s.JsonAST.{JField, JObject, JString}
+import org.json4s.jackson.JsonMethods.parse
+import org.slf4j.{Logger, LoggerFactory}
+
+object SparkResolveRelation {
+  def main(args: Array[String]): Unit = {
+    val log: Logger = LoggerFactory.getLogger(getClass)
+    val conf: SparkConf = new SparkConf()
+    val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/resolution/resolve_relations_params.json")))
+    parser.parseArgument(args)
+    val spark: SparkSession =
+      SparkSession
+        .builder()
+        .config(conf)
+        .appName(getClass.getSimpleName)
+        .master(parser.get("master")).getOrCreate()
+
+
+    val graphBasePath = parser.get("graphBasePath")
+    log.info(s"graphBasePath  -> $graphBasePath")
+    val workingPath = parser.get("workingPath")
+    log.info(s"workingPath  -> $workingPath")
+
+    implicit val relEncoder: Encoder[Relation] = Encoders.kryo(classOf[Relation])
+    import spark.implicits._
+
+
+    //CLEANING TEMPORARY FOLDER
+    HdfsSupport.remove(workingPath, spark.sparkContext.hadoopConfiguration)
+    val fs = FileSystem.get(spark.sparkContext.hadoopConfiguration)
+    fs.mkdirs(new Path(workingPath))
+
+    extractPidResolvedTableFromJsonRDD(spark, graphBasePath, workingPath)
+
+    val mapper: ObjectMapper = new ObjectMapper()
+
+    val rPid: Dataset[(String, String)] = spark.read.load(s"$workingPath/relationResolvedPid").as[(String, String)]
+
+    val relationDs: Dataset[(String, Relation)] = spark.read.text(s"$graphBasePath/relation").as[String]
+      .map(s => mapper.readValue(s, classOf[Relation])).as[Relation]
+      .map(r => (r.getSource.toLowerCase, r))(Encoders.tuple(Encoders.STRING, relEncoder))
+
+    relationDs.joinWith(rPid, relationDs("_1").equalTo(rPid("_2")), "left").map {
+      m =>
+        val sourceResolved = m._2
+        val currentRelation = m._1._2
+        if (sourceResolved != null && sourceResolved._1 != null && sourceResolved._1.nonEmpty)
+          currentRelation.setSource(sourceResolved._1)
+        currentRelation
+    }.write
+      .mode(SaveMode.Overwrite)
+      .save(s"$workingPath/relationResolvedSource")
+
+
+    val relationSourceResolved: Dataset[(String, Relation)] = spark.read.load(s"$workingPath/relationResolvedSource").as[Relation]
+      .map(r => (r.getTarget.toLowerCase, r))(Encoders.tuple(Encoders.STRING, relEncoder))
+    relationSourceResolved.joinWith(rPid, relationSourceResolved("_1").equalTo(rPid("_2")), "left").map {
+      m =>
+        val targetResolved = m._2
+        val currentRelation = m._1._2
+        if (targetResolved != null && targetResolved._1.nonEmpty)
+          currentRelation.setTarget(targetResolved._1)
+        currentRelation
+    }.filter(r => !r.getSource.startsWith("unresolved") && !r.getTarget.startsWith("unresolved"))
+      .write
+      .mode(SaveMode.Overwrite)
+      .save(s"$workingPath/relation_resolved")
+
+
+    // TO BE conservative we keep the original relation in the working dir
+    // and save the relation resolved on the graphBasePath
+    //In future this two line of code should be removed
+
+    fs.rename(new Path(s"$graphBasePath/relation"), new Path(s"$workingPath/relation"))
+
+    spark.read.load(s"$workingPath/relation_resolved").as[Relation]
+      .map(r => mapper.writeValueAsString(r))
+      .write
+      .option("compression", "gzip")
+      .mode(SaveMode.Overwrite)
+      .text(s"$graphBasePath/relation")
+  }
+
+
+  def extractPidsFromRecord(input: String): (String, List[(String, String)]) = {
+    implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
+    lazy val json: json4s.JValue = parse(input)
+    val id: String = (json \ "id").extract[String]
+    val result: List[(String, String)] = for {
+      JObject(pids) <- json \\ "instance" \ "pid"
+      JField("value", JString(pidValue)) <- pids
+      JField("qualifier", JObject(qualifier)) <- pids
+      JField("classname", JString(pidType)) <- qualifier
+    } yield (pidValue, pidType)
+
+    val alternateIds: List[(String, String)] = for {
+      JObject(pids) <- json \\ "alternateIdentifier"
+      JField("value", JString(pidValue)) <- pids
+      JField("qualifier", JObject(qualifier)) <- pids
+      JField("classname", JString(pidType)) <- qualifier
+    } yield (pidValue, pidType)
+
+    (id, result ::: alternateIds)
+  }
+
+
+  private def isRelation(input: String): Boolean = {
+
+    implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
+    lazy val json: json4s.JValue = parse(input)
+    val source = (json \ "source").extractOrElse[String](null)
+
+    source != null
+  }
+
+  private def extractPidResolvedTableFromJsonRDD(spark: SparkSession, graphPath: String, workingPath: String) = {
+    import spark.implicits._
+
+    val d: RDD[(String, String)] = spark.sparkContext.textFile(s"$graphPath/*")
+      .filter(i => !isRelation(i))
+      .map(i => extractPidsFromRecord(i))
+      .filter(s => s != null && s._1 != null && s._2 != null && s._2.nonEmpty)
+      .flatMap { p =>
+        p._2.map(pid =>
+          (p._1, DHPUtils.generateUnresolvedIdentifier(pid._1, pid._2))
+        )
+      }.filter(r => r._1 != null || r._2 != null)
+
+    spark.createDataset(d)
+      .groupByKey(_._2)
+      .reduceGroups((x, y) => if (x._1.startsWith("50|doi") || x._1.startsWith("50|pmid")) x else y)
+      .map(s => s._2)
+      .write
+      .mode(SaveMode.Overwrite)
+      .save(s"$workingPath/relationResolvedPid")
+  }
+
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/SparkResolveRelation.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/SparkResolveRelation.scala
deleted file mode 100644
index 1b13b81c77..0000000000
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/sx/graph/SparkResolveRelation.scala
+++ /dev/null
@@ -1,154 +0,0 @@
-package eu.dnetlib.dhp.sx.graph
-
-import com.fasterxml.jackson.databind.ObjectMapper
-import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetlib.dhp.schema.oaf.{Relation, Result}
-import org.apache.commons.io.IOUtils
-import org.apache.hadoop.io.compress.GzipCodec
-import org.apache.spark.SparkConf
-import org.apache.spark.rdd.RDD
-import org.apache.spark.sql._
-import org.json4s
-import org.json4s.DefaultFormats
-import org.json4s.JsonAST.{JField, JObject, JString}
-import org.json4s.jackson.JsonMethods.parse
-import org.slf4j.{Logger, LoggerFactory}
-
-import scala.collection.JavaConverters._
-object SparkResolveRelation {
-  def main(args: Array[String]): Unit = {
-    val log: Logger = LoggerFactory.getLogger(getClass)
-    val conf: SparkConf = new SparkConf()
-    val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/sx/graph/resolve_relations_params.json")))
-    parser.parseArgument(args)
-    val spark: SparkSession =
-      SparkSession
-        .builder()
-        .config(conf)
-        .appName(getClass.getSimpleName)
-        .master(parser.get("master")).getOrCreate()
-
-
-    val relationPath = parser.get("relationPath")
-    log.info(s"sourcePath  -> $relationPath")
-    val entityPath = parser.get("entityPath")
-    log.info(s"entityPath  -> $entityPath")
-    val workingPath = parser.get("workingPath")
-    log.info(s"workingPath  -> $workingPath")
-
-    implicit  val relEncoder: Encoder[Relation] = Encoders.kryo(classOf[Relation])
-    import spark.implicits._
-
-
-    extractPidResolvedTableFromJsonRDD(spark, entityPath, workingPath)
-
-    val mappper = new ObjectMapper()
-
-    val rPid:Dataset[(String,String)] = spark.read.load(s"$workingPath/relationResolvedPid").as[(String,String)]
-
-    val relationDs:Dataset[(String,Relation)] = spark.read.load(relationPath).as[Relation].map(r => (r.getSource.toLowerCase, r))(Encoders.tuple(Encoders.STRING, relEncoder))
-
-    relationDs.joinWith(rPid, relationDs("_1").equalTo(rPid("_2")), "left").map{
-      m =>
-        val sourceResolved = m._2
-        val currentRelation = m._1._2
-        if (sourceResolved!=null && sourceResolved._1!=null && sourceResolved._1.nonEmpty)
-          currentRelation.setSource(sourceResolved._1)
-        currentRelation
-    }.write
-      .mode(SaveMode.Overwrite)
-      .save(s"$workingPath/relationResolvedSource")
-
-
-    val relationSourceResolved:Dataset[(String,Relation)] = spark.read.load(s"$workingPath/relationResolvedSource").as[Relation].map(r => (r.getTarget.toLowerCase, r))(Encoders.tuple(Encoders.STRING, relEncoder))
-    relationSourceResolved.joinWith(rPid, relationSourceResolved("_1").equalTo(rPid("_2")), "left").map{
-      m =>
-        val targetResolved = m._2
-        val currentRelation = m._1._2
-        if (targetResolved!=null && targetResolved._1.nonEmpty)
-          currentRelation.setTarget(targetResolved._1)
-        currentRelation
-    }.filter(r => r.getSource.startsWith("50")&& r.getTarget.startsWith("50"))
-      .write
-      .mode(SaveMode.Overwrite)
-      .save(s"$workingPath/relation_resolved")
-
-    spark.read.load(s"$workingPath/relation_resolved").as[Relation]
-                    .map(r => mappper.writeValueAsString(r))
-                    .rdd.saveAsTextFile(s"$workingPath/relation", classOf[GzipCodec])
-
-  }
-
-
-  def extractPidsFromRecord(input:String):(String,List[(String,String)]) = {
-    implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
-    lazy val json: json4s.JValue = parse(input)
-    val id:String = (json \ "id").extract[String]
-    val result: List[(String,String)] = for {
-      JObject(pids) <- json \ "pid"
-      JField("value", JString(pidValue)) <- pids
-      JField("qualifier", JObject(qualifier)) <- pids
-      JField("classname", JString(pidType)) <- qualifier
-    } yield (pidValue, pidType)
-
-    val alternateIds: List[(String,String)] = for {
-      JObject(pids) <- json \\ "alternateIdentifier"
-      JField("value", JString(pidValue)) <- pids
-      JField("qualifier", JObject(qualifier)) <- pids
-      JField("classname", JString(pidType)) <- qualifier
-    } yield (pidValue, pidType)
-
-    (id,result:::alternateIds)
-  }
-
-  private def extractPidResolvedTableFromJsonRDD(spark: SparkSession, entityPath: String, workingPath: String) = {
-    import spark.implicits._
-
-    val d: RDD[(String,String)] = spark.sparkContext.textFile(s"$entityPath/*")
-      .map(i => extractPidsFromRecord(i))
-      .filter(s => s != null && s._1!= null && s._2!=null && s._2.nonEmpty)
-      .flatMap{ p =>
-                  p._2.map(pid =>
-                    (p._1, convertPidToDNETIdentifier(pid._1, pid._2))
-                  )
-      }.filter(r =>r._1 != null || r._2 != null)
-
-    spark.createDataset(d)
-    .groupByKey(_._2)
-      .reduceGroups((x, y) => if (x._1.startsWith("50|doi") || x._1.startsWith("50|pmid")) x else y)
-      .map(s => s._2)
-      .write
-      .mode(SaveMode.Overwrite)
-      .save(s"$workingPath/relationResolvedPid")
-  }
-
-
-  /*
-    This method should be used once we finally convert everythings in Kryo dataset
-    instead of using rdd of json
-   */
-  private def extractPidResolvedTableFromKryo(spark: SparkSession, entityPath: String, workingPath: String) = {
-    import spark.implicits._
-    implicit val oafEncoder: Encoder[Result] = Encoders.kryo(classOf[Result])
-    val entities: Dataset[Result] = spark.read.load(s"$entityPath/*").as[Result]
-    entities.flatMap(e => e.getPid.asScala
-      .map(p =>
-        convertPidToDNETIdentifier(p.getValue, p.getQualifier.getClassid))
-      .filter(s => s != null)
-      .map(s => (s, e.getId))
-    ).groupByKey(_._1)
-      .reduceGroups((x, y) => if (x._2.startsWith("50|doi") || x._2.startsWith("50|pmid")) x else y)
-      .map(s => s._2)
-      .write
-      .mode(SaveMode.Overwrite)
-      .save(s"$workingPath/relationResolvedPid")
-  }
-
-  def convertPidToDNETIdentifier(pid:String, pidType: String):String = {
-    if (pid==null || pid.isEmpty || pidType== null || pidType.isEmpty)
-      null
-    else
-      s"unresolved::${pid.toLowerCase}::${pidType.toLowerCase}"
-  }
-
-}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolverelation/oozie_app/config-default.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/config-default.xml
similarity index 100%
rename from dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolverelation/oozie_app/config-default.xml
rename to dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/config-default.xml
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolverelation/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
similarity index 54%
rename from dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolverelation/oozie_app/workflow.xml
rename to dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
index 7683ff94cd..e9e1a8edea 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolverelation/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
@@ -1,44 +1,23 @@
 <workflow-app name="Resolve Relation" xmlns="uri:oozie:workflow:0.5">
     <parameters>
         <property>
-            <name>entityPath</name>
-            <description>the path of deduplicate Entities</description>
+            <name>graphBasePath</name>
+            <description>the path of the graph</description>
         </property>
-        <property>
-            <name>relationPath</name>
-            <description>the path of relation unresolved</description>
-        </property>
-        <property>
-            <name>targetPath</name>
-            <description>the path of relation unresolved</description>
-        </property>
-
     </parameters>
 
-    <start to="DropRelFolder"/>
+    <start to="ResolveRelations"/>
 
     <kill name="Kill">
         <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
     </kill>
 
-
-    <action name="DropRelFolder">
-        <fs>
-            <delete path='${targetPath}/relation'/>
-            <delete path='${targetPath}/relation_resolved'/>
-            <delete path='${targetPath}/resolvedSource'/>
-            <delete path='${targetPath}/resolvedPid'/>
-
-        </fs>
-        <ok to="ResolveRelations"/>
-        <error to="Kill"/>
-    </action>
     <action name="ResolveRelations">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn</master>
             <mode>cluster</mode>
             <name>Resolve Relations in raw graph</name>
-            <class>eu.dnetlib.dhp.sx.graph.SparkResolveRelation</class>
+            <class>eu.dnetlib.dhp.oa.graph.resolution.SparkResolveRelation</class>
             <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
@@ -51,9 +30,8 @@
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
             <arg>--master</arg><arg>yarn</arg>
-            <arg>--relationPath</arg><arg>${relationPath}</arg>
-            <arg>--workingPath</arg><arg>${targetPath}</arg>
-            <arg>--entityPath</arg><arg>${entityPath}</arg>
+            <arg>--graphBasePath</arg><arg>${graphBasePath}</arg>
+            <arg>--workingPath</arg><arg>${workingDir}</arg>
         </spark>
         <ok to="End"/>
         <error to="Kill"/>
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolve_relations_params.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/resolve_relations_params.json
similarity index 50%
rename from dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolve_relations_params.json
rename to dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/resolve_relations_params.json
index f211adb9a4..1fbe206481 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/sx/graph/resolve_relations_params.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/resolve_relations_params.json
@@ -1,6 +1,5 @@
 [
   {"paramName":"mt",  "paramLongName":"master",       "paramDescription": "should be local or yarn",    "paramRequired": true},
-  {"paramName":"r",   "paramLongName":"relationPath", "paramDescription": "the source Path",            "paramRequired": true},
   {"paramName":"w",   "paramLongName":"workingPath",  "paramDescription": "the source Path",            "paramRequired": true},
-  {"paramName":"e",   "paramLongName":"entityPath",   "paramDescription": "the path of the raw graph",  "paramRequired": true}
+  {"paramName":"g",   "paramLongName":"graphBasePath",   "paramDescription": "the path of the raw graph",  "paramRequired": true}
 ]
\ No newline at end of file
diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala
index 5b7fbe1cf5..bd7e4fd094 100644
--- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/sx/graph/scholix/ScholixGraphTest.scala
@@ -1,10 +1,10 @@
 package eu.dnetlib.dhp.sx.graph.scholix
 
 import com.fasterxml.jackson.databind.{DeserializationFeature, ObjectMapper, SerializationFeature}
+import eu.dnetlib.dhp.oa.graph.resolution.SparkResolveRelation
 import eu.dnetlib.dhp.schema.oaf.{Relation, Result}
 import eu.dnetlib.dhp.schema.sx.scholix.Scholix
 import eu.dnetlib.dhp.schema.sx.summary.ScholixSummary
-import eu.dnetlib.dhp.sx.graph.SparkResolveRelation
 import eu.dnetlib.dhp.sx.graph.bio.pubmed.AbstractVocabularyTest
 import org.json4s
 import org.json4s.DefaultFormats

From ab3a99d3e9463fce361dc3cd1f2872ddbaefdac0 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 20 Oct 2021 17:19:47 +0200
Subject: [PATCH 095/106] removed old datacite oozie workflow

---
 .../actionset/oozie_app/config-default.xml    | 23 -----
 .../datacite/actionset/oozie_app/workflow.xml | 46 ----------
 .../datacite/oozie_app/config-default.xml     | 23 -----
 .../datacite/oozie_app/workflow.xml           | 81 ------------------
 .../scholix/oozie_app/config-default.xml      | 23 -----
 .../datacite/scholix/oozie_app/workflow.xml   | 84 -------------------
 6 files changed, 280 deletions(-)
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/config-default.xml
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/workflow.xml

diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/config-default.xml
deleted file mode 100644
index dd3c32c620..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/config-default.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/workflow.xml
deleted file mode 100644
index 3c58ace7bf..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/actionset/oozie_app/workflow.xml
+++ /dev/null
@@ -1,46 +0,0 @@
-<workflow-app name="Datacite_to_ActionSet_Workflow" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>sourcePath</name>
-            <description>the working path of Datacite stores</description>
-        </property>
-        <property>
-            <name>outputPath</name>
-            <description>the path of Datacite ActionSet</description>
-        </property>
-    </parameters>
-
-    <start to="ExportDataset"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-
-    <action name="ExportDataset">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>ExportDataset</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.ExportActionSetJobNode</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}</arg>
-            <arg>--targetPath</arg><arg>${outputPath}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/config-default.xml
deleted file mode 100644
index dd3c32c620..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/config-default.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
deleted file mode 100644
index c6332ff7d5..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/oozie_app/workflow.xml
+++ /dev/null
@@ -1,81 +0,0 @@
-<workflow-app name="Import_Datacite_and_transform_to_OAF" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>mainPath</name>
-            <description>the working path of Datacite stores</description>
-        </property>
-        <property>
-            <name>isLookupUrl</name>
-            <description>The IS lookUp service endopoint</description>
-        </property>
-        <property>
-            <name>blocksize</name>
-            <value>100</value>
-            <description>The request block size</description>
-        </property>
-
-    </parameters>
-
-    <start to="ImportDatacite"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-
-    <action name="ImportDatacite">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>ImportDatacite</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.ImportDatacite</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--targetPath</arg><arg>${mainPath}/datacite_update</arg>
-            <arg>--dataciteDumpPath</arg><arg>${mainPath}/datacite_dump</arg>
-            <arg>--namenode</arg><arg>${nameNode}</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-            <arg>--blocksize</arg><arg>${blocksize}</arg>
-        </spark>
-        <ok to="TransformJob"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="TransformJob">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>TransformJob</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.GenerateDataciteDatasetSpark</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${mainPath}/datacite_dump</arg>
-            <arg>--targetPath</arg><arg>${mainPath}/datacite_oaf</arg>
-            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
-            <arg>--exportLinks</arg><arg>false</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/config-default.xml
deleted file mode 100644
index dd3c32c620..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/config-default.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-<configuration>
-    <property>
-        <name>jobTracker</name>
-        <value>yarnRM</value>
-    </property>
-    <property>
-        <name>nameNode</name>
-        <value>hdfs://nameservice1</value>
-    </property>
-    <property>
-        <name>oozie.use.system.libpath</name>
-        <value>true</value>
-    </property>
-    <property>
-        <name>oozie.action.sharelib.for.spark</name>
-        <value>spark2</value>
-    </property>
-
-    <property>
-        <name>oozie.launcher.mapreduce.user.classpath.first</name>
-        <value>true</value>
-    </property>
-</configuration>
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/workflow.xml
deleted file mode 100644
index 397288c694..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/scholix/oozie_app/workflow.xml
+++ /dev/null
@@ -1,84 +0,0 @@
-<workflow-app name="Generate_Datacite_and_Crossref_dump_for_Scholexplorer" xmlns="uri:oozie:workflow:0.5">
-    <parameters>
-        <property>
-            <name>datacitePath</name>
-            <description>the path of Datacite spark dataset</description>
-        </property>
-        <property>
-            <name>isLookupUrl</name>
-            <description>The IS lookUp service endopoint</description>
-        </property>
-        <property>
-            <name>crossrefPath</name>
-            <description>the path of Crossref spark dataset</description>
-        </property>
-
-        <property>
-            <name>targetPath</name>
-            <description>the path of Crossref spark dataset</description>
-        </property>
-
-    </parameters>
-
-    <start to="ImportDatacite"/>
-
-    <kill name="Kill">
-        <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
-    </kill>
-
-
-    <action name="ImportDatacite">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>ImportDatacite</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.GenerateDataciteDatasetSpark</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${datacitePath}</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/datacite_oaf</arg>
-            <arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
-            <arg>--exportLinks</arg><arg>true</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="FilterCrossrefEntities"/>
-        <error to="Kill"/>
-    </action>
-
-
-    <action name="FilterCrossrefEntities">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>FilterCrossrefEntities</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.FilterCrossrefEntitiesSpark</class>
-            <jar>dhp-aggregation-${projectVersion}.jar</jar>
-            <spark-opts>
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.sql.shuffle.partitions=3840
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${crossrefPath}</arg>
-            <arg>--targetPath</arg><arg>${targetPath}/crossref_oaf</arg>
-            <arg>--master</arg><arg>yarn-cluster</arg>
-        </spark>
-        <ok to="End"/>
-        <error to="Kill"/>
-    </action>
-
-    <end name="End"/>
-</workflow-app>
\ No newline at end of file

From aeeebd573b2538e78c81ec8b9680ab5f4b4a794d Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Wed, 20 Oct 2021 17:37:42 +0200
Subject: [PATCH 096/106] code refactor renamed datacite package

---
 .../datacite/ExportActionSetJobNode.scala     | 41 -----------------
 .../FilterCrossrefEntitiesSpark.scala         | 46 -------------------
 .../datacite/AbstractRestClient.scala         |  8 ++--
 .../datacite/DataciteAPIImporter.scala        |  4 +-
 .../DataciteToOAFTransformation.scala         |  2 +-
 .../GenerateDataciteDatasetSpark.scala        | 19 ++++----
 .../datacite/ImportDatacite.scala             | 21 ++++-----
 .../SparkDownloadUpdateDatacite.scala         | 16 +++----
 .../collection/oozie_app/config-default.xml   |  0
 .../collection/oozie_app/workflow.xml         |  2 +-
 .../datacite/datacite_filter                  |  0
 .../datacite/exportDataset_parameters.json    |  0
 .../datacite/filter_crossref_param.json       |  0
 .../datacite/generate_dataset_params.json     |  0
 .../datacite/hostedBy_map.json                |  0
 .../datacite/import_from_api.json             |  0
 .../oozie_app/config-default.xml              |  0
 .../transformation/oozie_app/workflow.xml     |  2 +-
 .../datacite/DataciteToOAFTest.scala          |  5 +-
 19 files changed, 36 insertions(+), 130 deletions(-)
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ExportActionSetJobNode.scala
 delete mode 100644 dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/FilterCrossrefEntitiesSpark.scala
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/AbstractRestClient.scala (90%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/DataciteAPIImporter.scala (95%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/DataciteToOAFTransformation.scala (99%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/GenerateDataciteDatasetSpark.scala (86%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/ImportDatacite.scala (93%)
 rename dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/{actionmanager => }/datacite/SparkDownloadUpdateDatacite.scala (68%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/collection/oozie_app/config-default.xml (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/collection/oozie_app/workflow.xml (95%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/datacite_filter (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/exportDataset_parameters.json (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/filter_crossref_param.json (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/generate_dataset_params.json (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/hostedBy_map.json (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/import_from_api.json (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/transformation/oozie_app/config-default.xml (100%)
 rename dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/{actionmanager => }/datacite/transformation/oozie_app/workflow.xml (97%)
 rename dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/{actionmanager => }/datacite/DataciteToOAFTest.scala (88%)

diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ExportActionSetJobNode.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ExportActionSetJobNode.scala
deleted file mode 100644
index 9f0d257359..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ExportActionSetJobNode.scala
+++ /dev/null
@@ -1,41 +0,0 @@
-package eu.dnetlib.dhp.actionmanager.datacite
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetlib.dhp.schema.oaf.Oaf
-import org.apache.hadoop.io.Text
-import org.apache.hadoop.io.compress.GzipCodec
-import org.apache.hadoop.mapred.SequenceFileOutputFormat
-import org.apache.spark.SparkConf
-import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession}
-import org.slf4j.{Logger, LoggerFactory}
-
-import scala.io.Source
-
-object ExportActionSetJobNode {
-
-  val log: Logger = LoggerFactory.getLogger(ExportActionSetJobNode.getClass)
-
-  def main(args: Array[String]): Unit = {
-    val conf = new SparkConf
-    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/datacite/exportDataset_parameters.json")).mkString)
-    parser.parseArgument(args)
-    val master = parser.get("master")
-    val sourcePath = parser.get("sourcePath")
-    val targetPath = parser.get("targetPath")
-
-    val spark: SparkSession = SparkSession.builder().config(conf)
-      .appName(ExportActionSetJobNode.getClass.getSimpleName)
-      .master(master)
-      .getOrCreate()
-    implicit val resEncoder: Encoder[Oaf] = Encoders.kryo[Oaf]
-    implicit val tEncoder:Encoder[(String,String)] = Encoders.tuple(Encoders.STRING,Encoders.STRING)
-
-    spark.read.load(sourcePath).as[Oaf]
-      .map(o =>DataciteToOAFTransformation.toActionSet(o))
-      .filter(o => o!= null)
-      .rdd.map(s => (new Text(s._1), new Text(s._2))).saveAsHadoopFile(s"$targetPath", classOf[Text], classOf[Text], classOf[SequenceFileOutputFormat[Text,Text]], classOf[GzipCodec])
-
-
-  }
-
-}
\ No newline at end of file
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/FilterCrossrefEntitiesSpark.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/FilterCrossrefEntitiesSpark.scala
deleted file mode 100644
index 5860c50aca..0000000000
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/FilterCrossrefEntitiesSpark.scala
+++ /dev/null
@@ -1,46 +0,0 @@
-package eu.dnetlib.dhp.actionmanager.datacite
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
-import eu.dnetlib.dhp.schema.mdstore.MetadataRecord
-import eu.dnetlib.dhp.schema.oaf.{Oaf, Result}
-import eu.dnetlib.dhp.utils.ISLookupClientFactory
-import org.apache.spark.SparkConf
-import org.apache.spark.sql.{Dataset, Encoder, Encoders, SaveMode, SparkSession}
-import org.slf4j.{Logger, LoggerFactory}
-
-import scala.io.Source
-
-object FilterCrossrefEntitiesSpark {
-
-  val log: Logger = LoggerFactory.getLogger(getClass.getClass)
-
-  def main(args: Array[String]): Unit = {
-    val conf = new SparkConf
-    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/datacite/filter_crossref_param.json")).mkString)
-    parser.parseArgument(args)
-    val master = parser.get("master")
-    val sourcePath = parser.get("sourcePath")
-    log.info("sourcePath: {}", sourcePath)
-    val targetPath = parser.get("targetPath")
-    log.info("targetPath: {}", targetPath)
-
-
-
-    val spark: SparkSession = SparkSession.builder().config(conf)
-      .appName(getClass.getSimpleName)
-      .master(master)
-      .getOrCreate()
-
-
-
-    implicit val oafEncoder: Encoder[Oaf] = Encoders.kryo[Oaf]
-    implicit val resEncoder: Encoder[Result] = Encoders.kryo[Result]
-
-    val d:Dataset[Oaf]= spark.read.load(sourcePath).as[Oaf]
-
-    d.filter(r => r.isInstanceOf[Result]).map(r => r.asInstanceOf[Result]).write.mode(SaveMode.Overwrite).save(targetPath)
-
-  }
-
-}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/AbstractRestClient.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/AbstractRestClient.scala
similarity index 90%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/AbstractRestClient.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/AbstractRestClient.scala
index bae41b218b..6a9b8e3e54 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/AbstractRestClient.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/AbstractRestClient.scala
@@ -1,12 +1,10 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
 import org.apache.commons.io.IOUtils
 import org.apache.http.client.config.RequestConfig
-import org.apache.http.client.methods.{HttpGet, HttpPost, HttpRequestBase, HttpUriRequest}
+import org.apache.http.client.methods.{HttpGet, HttpPost, HttpUriRequest}
 import org.apache.http.entity.StringEntity
-import org.apache.http.impl.client.{HttpClientBuilder, HttpClients}
-
-import java.io.IOException
+import org.apache.http.impl.client.HttpClientBuilder
 
 
 abstract class AbstractRestClient extends Iterator[String] {
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteAPIImporter.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteAPIImporter.scala
similarity index 95%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteAPIImporter.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteAPIImporter.scala
index 36ec9e8c33..7ec44a6ff0 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteAPIImporter.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteAPIImporter.scala
@@ -1,7 +1,7 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
-import org.json4s.{DefaultFormats, JValue}
 import org.json4s.jackson.JsonMethods.{compact, parse, render}
+import org.json4s.{DefaultFormats, JValue}
 
 class DataciteAPIImporter(timestamp: Long = 0, blocks: Long = 10, until:Long = -1) extends AbstractRestClient {
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteToOAFTransformation.scala
similarity index 99%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteToOAFTransformation.scala
index e3729e5b71..6ce4920edf 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTransformation.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/DataciteToOAFTransformation.scala
@@ -1,4 +1,4 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
 import com.fasterxml.jackson.databind.ObjectMapper
 import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/GenerateDataciteDatasetSpark.scala
similarity index 86%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/GenerateDataciteDatasetSpark.scala
index 65d00c4d1d..a63627d1c7 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/GenerateDataciteDatasetSpark.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/GenerateDataciteDatasetSpark.scala
@@ -1,10 +1,11 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
 import com.fasterxml.jackson.databind.ObjectMapper
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
-import eu.dnetlib.dhp.common.Constants.{MDSTORE_DATA_PATH, MDSTORE_SIZE_PATH}
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
 import eu.dnetlib.dhp.collection.CollectionUtils.fixRelations
+import eu.dnetlib.dhp.common.Constants.MDSTORE_DATA_PATH
+import eu.dnetlib.dhp.common.Constants.MDSTORE_SIZE_PATH
+import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup
 import eu.dnetlib.dhp.schema.mdstore.{MDStoreVersion, MetadataRecord}
 import eu.dnetlib.dhp.schema.oaf.Oaf
 import eu.dnetlib.dhp.utils.DHPUtils.writeHdfsFile
@@ -21,7 +22,7 @@ object GenerateDataciteDatasetSpark {
 
   def main(args: Array[String]): Unit = {
     val conf = new SparkConf
-    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json")).mkString)
+    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/datacite/generate_dataset_params.json")).mkString)
     parser.parseArgument(args)
     val master = parser.get("master")
     val sourcePath = parser.get("sourcePath")
@@ -36,12 +37,12 @@ object GenerateDataciteDatasetSpark {
       .master(master)
       .getOrCreate()
 
+    import spark.implicits._
+
     implicit val mrEncoder: Encoder[MetadataRecord] = Encoders.kryo[MetadataRecord]
 
     implicit val resEncoder: Encoder[Oaf] = Encoders.kryo[Oaf]
 
-    import spark.implicits._
-
     val mdstoreOutputVersion = parser.get("mdstoreOutputVersion")
     val mapper = new ObjectMapper()
     val cleanedMdStoreVersion = mapper.readValue(mdstoreOutputVersion, classOf[MDStoreVersion])
@@ -54,10 +55,10 @@ object GenerateDataciteDatasetSpark {
       .filter(d => d.isActive)
       .flatMap(d => DataciteToOAFTransformation.generateOAF(d.json, d.timestamp, d.timestamp, vocabularies, exportLinks))
       .filter(d => d != null)
-      .flatMap(i=> fixRelations(i)).filter(i => i != null)
+      .flatMap(i => fixRelations(i)).filter(i => i != null)
       .write.mode(SaveMode.Overwrite).save(targetPath)
 
-    val total_items =spark.read.load(targetPath).as[Oaf].count()
+    val total_items = spark.read.load(targetPath).as[Oaf].count()
     writeHdfsFile(spark.sparkContext.hadoopConfiguration, s"$total_items", outputBasePath + MDSTORE_SIZE_PATH)
   }
-}
\ No newline at end of file
+}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ImportDatacite.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/ImportDatacite.scala
similarity index 93%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ImportDatacite.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/ImportDatacite.scala
index 2b73d29559..018b4958ad 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/ImportDatacite.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/ImportDatacite.scala
@@ -1,6 +1,5 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
-import eu.dnetlib.dhp.actionmanager.datacite.DataciteToOAFTransformation.df_it
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import org.apache.hadoop.conf.Configuration
 import org.apache.hadoop.fs.{FileSystem, LocalFileSystem, Path}
@@ -9,14 +8,14 @@ import org.apache.hadoop.io.{IntWritable, SequenceFile, Text}
 import org.apache.spark.SparkContext
 import org.apache.spark.rdd.RDD
 import org.apache.spark.sql.expressions.Aggregator
+import org.apache.spark.sql.functions.max
 import org.apache.spark.sql.{Dataset, Encoder, SaveMode, SparkSession}
 import org.json4s.DefaultFormats
 import org.json4s.jackson.JsonMethods.parse
-import org.apache.spark.sql.functions.max
 import org.slf4j.{Logger, LoggerFactory}
 
-import java.time.format.DateTimeFormatter._
-import java.time.{LocalDate, LocalDateTime, ZoneOffset}
+import java.time.format.DateTimeFormatter.ISO_DATE_TIME
+import java.time.{LocalDateTime, ZoneOffset}
 import scala.io.Source
 
 object ImportDatacite {
@@ -138,11 +137,11 @@ object ImportDatacite {
     }
   }
 
-  private def writeSequenceFile(hdfsTargetPath: Path, timestamp: Long, conf: Configuration, bs:Int): Long = {
-    var from:Long = timestamp * 1000
-    val delta:Long = 100000000L
+  private def writeSequenceFile(hdfsTargetPath: Path, timestamp: Long, conf: Configuration, bs: Int): Long = {
+    var from: Long = timestamp * 1000
+    val delta: Long = 100000000L
     var client: DataciteAPIImporter = null
-    val now :Long =System.currentTimeMillis()
+    val now: Long = System.currentTimeMillis()
     var i = 0
     try {
       val writer = SequenceFile.createWriter(conf, SequenceFile.Writer.file(hdfsTargetPath), SequenceFile.Writer.keyClass(classOf[IntWritable]), SequenceFile.Writer.valueClass(classOf[Text]))
@@ -168,7 +167,7 @@ object ImportDatacite {
               start = System.currentTimeMillis
             }
           }
-          println(s"updating from value: $from  -> ${from+delta}")
+          println(s"updating from value: $from  -> ${from + delta}")
           from = from + delta
         }
       } catch {
@@ -183,4 +182,4 @@ object ImportDatacite {
     i
   }
 
-}
\ No newline at end of file
+}
diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/SparkDownloadUpdateDatacite.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/SparkDownloadUpdateDatacite.scala
similarity index 68%
rename from dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/SparkDownloadUpdateDatacite.scala
rename to dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/SparkDownloadUpdateDatacite.scala
index 0b459fcf68..d46e5423d3 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/datacite/SparkDownloadUpdateDatacite.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/datacite/SparkDownloadUpdateDatacite.scala
@@ -1,18 +1,14 @@
-package eu.dnetlib.dhp.actionmanager.datacite
-
+package eu.dnetlib.dhp.datacite
 
 import eu.dnetlib.dhp.application.ArgumentApplicationParser
 import eu.dnetlib.dhp.schema.oaf.{Oaf, Result}
-import org.apache.hadoop.conf.Configuration
-import org.apache.hadoop.fs.LocalFileSystem
-import org.apache.hadoop.hdfs.DistributedFileSystem
 import org.apache.spark.SparkConf
-import org.apache.spark.sql.{Encoder, Encoders, SparkSession}
 import org.apache.spark.sql.functions.max
+import org.apache.spark.sql.{Encoder, Encoders, SparkSession}
 import org.slf4j.{Logger, LoggerFactory}
 
 import java.text.SimpleDateFormat
-import java.util.{Date, Locale}
+import java.util.Locale
 import scala.io.Source
 
 object SparkDownloadUpdateDatacite {
@@ -21,7 +17,7 @@ object SparkDownloadUpdateDatacite {
   def main(args: Array[String]): Unit = {
 
     val conf = new SparkConf
-    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json")).mkString)
+    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/datacite/generate_dataset_params.json")).mkString)
     parser.parseArgument(args)
     val master = parser.get("master")
     val sourcePath = parser.get("sourcePath")
@@ -42,9 +38,9 @@ object SparkDownloadUpdateDatacite {
     import spark.implicits._
 
 
-    val maxDate:String = spark.read.load(workingPath).as[Oaf].filter(s => s.isInstanceOf[Result]).map(r => r.asInstanceOf[Result].getDateofcollection).select(max("value")).first().getString(0)
+    val maxDate: String = spark.read.load(workingPath).as[Oaf].filter(s => s.isInstanceOf[Result]).map(r => r.asInstanceOf[Result].getDateofcollection).select(max("value")).first().getString(0)
     val ISO8601FORMAT = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ssZ", Locale.US)
-    val string_to_date =ISO8601FORMAT.parse(maxDate)
+    val string_to_date = ISO8601FORMAT.parse(maxDate)
     val ts = string_to_date.getTime
 
 
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/collection/oozie_app/config-default.xml
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/config-default.xml
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/collection/oozie_app/config-default.xml
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/collection/oozie_app/workflow.xml
similarity index 95%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/collection/oozie_app/workflow.xml
index 41a2e22916..6989eed66e 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/collection/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/collection/oozie_app/workflow.xml
@@ -28,7 +28,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>ImportDatacite</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.ImportDatacite</class>
+            <class>eu.dnetlib.dhp.datacite.ImportDatacite</class>
             <jar>dhp-aggregation-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/datacite_filter b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/datacite_filter
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/datacite_filter
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/datacite_filter
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/exportDataset_parameters.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/exportDataset_parameters.json
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/exportDataset_parameters.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/exportDataset_parameters.json
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/filter_crossref_param.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/filter_crossref_param.json
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/filter_crossref_param.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/filter_crossref_param.json
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/generate_dataset_params.json
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/generate_dataset_params.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/generate_dataset_params.json
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/hostedBy_map.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/hostedBy_map.json
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/hostedBy_map.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/hostedBy_map.json
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/import_from_api.json b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/import_from_api.json
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/import_from_api.json
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/import_from_api.json
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/transformation/oozie_app/config-default.xml
similarity index 100%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/config-default.xml
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/transformation/oozie_app/config-default.xml
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/transformation/oozie_app/workflow.xml
similarity index 97%
rename from dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml
rename to dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/transformation/oozie_app/workflow.xml
index aeb824a41b..d5bae7305d 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/actionmanager/datacite/transformation/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/datacite/transformation/oozie_app/workflow.xml
@@ -47,7 +47,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>TransformJob</name>
-            <class>eu.dnetlib.dhp.actionmanager.datacite.GenerateDataciteDatasetSpark</class>
+            <class>eu.dnetlib.dhp.datacite.GenerateDataciteDatasetSpark</class>
             <jar>dhp-aggregation-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTest.scala b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/datacite/DataciteToOAFTest.scala
similarity index 88%
rename from dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTest.scala
rename to dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/datacite/DataciteToOAFTest.scala
index a795a910da..f21e9eab1c 100644
--- a/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/actionmanager/datacite/DataciteToOAFTest.scala
+++ b/dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/datacite/DataciteToOAFTest.scala
@@ -1,8 +1,7 @@
-package eu.dnetlib.dhp.actionmanager.datacite
+package eu.dnetlib.dhp.datacite
 
 
-import com.fasterxml.jackson.databind.ObjectMapper
-import com.fasterxml.jackson.databind.SerializationFeature
+import com.fasterxml.jackson.databind.{ObjectMapper, SerializationFeature}
 import eu.dnetlib.dhp.aggregation.AbstractVocabularyTest
 import eu.dnetlib.dhp.schema.oaf.Oaf
 import org.junit.jupiter.api.extension.ExtendWith

From ac36aa7d1c9324b1b018a71eeb3b4f94b05165a6 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Thu, 21 Oct 2021 11:35:02 +0200
Subject: [PATCH 097/106] fixed wrong Encoding during a map phase

---
 .../eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java     | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index c016e21565..77971a5a43 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -102,7 +102,7 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 			for (Map.Entry<String, Class> e : ModelSupport.oafTypes.entrySet()) {
 				oaf
 					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey()))
-					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.bean(e.getValue()))
+					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.STRING())
 					.write()
 					.option("compression", "gzip")
 					.mode(SaveMode.Append)

From 3702fe478d2082cd28b1f27bf0d094600d2e8b9b Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 21 Oct 2021 12:05:02 +0200
Subject: [PATCH 098/106] cleanup

---
 .../oa/graph/raw/CopyHdfsOafApplication.java  | 20 +------------------
 1 file changed, 1 insertion(+), 19 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index 77971a5a43..792264e18b 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -110,23 +110,5 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 			}
 		}
 	}
-
-	private static Relation getInverse(Relation rel, VocabularyGroup vocs) {
-		final Relation inverse = new Relation();
-
-		inverse.setProperties(rel.getProperties());
-		inverse.setValidated(rel.getValidated());
-		inverse.setValidationDate(rel.getValidationDate());
-		inverse.setCollectedfrom(rel.getCollectedfrom());
-		inverse.setDataInfo(rel.getDataInfo());
-		inverse.setLastupdatetimestamp(rel.getLastupdatetimestamp());
-
-		inverse.setSource(rel.getTarget());
-		inverse.setTarget(rel.getSource());
-		inverse.setRelType(rel.getRelType());
-		inverse.setSubRelType(rel.getSubRelType());
-
-		return inverse;
-	}
-
+	
 }

From d147295c2f9b531b8da7973436694c0354c79ba9 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 21 Oct 2021 14:15:57 +0200
Subject: [PATCH 099/106] avoiding java.io.NotSerializableException:
 java.util.HashMap

---
 .../dhp/oa/graph/raw/CopyHdfsOafApplication.java   | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
index 792264e18b..31ebcbc6e5 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
@@ -31,6 +31,7 @@ import eu.dnetlib.dhp.schema.oaf.Oaf;
 import eu.dnetlib.dhp.schema.oaf.Relation;
 import eu.dnetlib.dhp.utils.ISLookupClientFactory;
 import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
+import scala.Tuple2;
 
 public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 
@@ -73,10 +74,13 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
 		conf.registerKryoClasses(ModelSupport.getOafModelClasses());
 
-		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, hdfsPath, paths));
+		final List<String> oafTypes = Lists.newArrayList(ModelSupport.oafTypes.keySet());
+
+		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, oafTypes, hdfsPath, paths));
 	}
 
 	public static void processPaths(final SparkSession spark,
+		final List<String> oafTypes,
 		final String outputPath,
 		final Set<String> paths) {
 
@@ -99,16 +103,16 @@ public class CopyHdfsOafApplication extends AbstractMigrationApplication {
 				.as(Encoders.kryo(Oaf.class));
 
 			// dispatch each entity type individually in the respective graph subdirectory in append mode
-			for (Map.Entry<String, Class> e : ModelSupport.oafTypes.entrySet()) {
+			for (String type : oafTypes) {
 				oaf
-					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(e.getKey()))
+					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(type))
 					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.STRING())
 					.write()
 					.option("compression", "gzip")
 					.mode(SaveMode.Append)
-					.text(outputPath + "/" + e.getKey());
+					.text(outputPath + "/" + type);
 			}
 		}
 	}
-	
+
 }

From 6b34ba737eae62a3c8c61dc279fbfdd17233aa18 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 21 Oct 2021 14:16:18 +0200
Subject: [PATCH 100/106] minor

---
 .../src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java       | 2 +-
 dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java    | 3 +--
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java b/dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java
index 0b2cd571fa..654fdd5ac8 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/common/HdfsSupport.java
@@ -28,7 +28,7 @@ public class HdfsSupport {
 	 * @param configuration Configuration of hadoop env
 	 */
 	public static boolean exists(String path, Configuration configuration) {
-		logger.info("Removing path: {}", path);
+		logger.info("Checking existence for path: {}", path);
 		return rethrowAsRuntimeException(
 			() -> {
 				Path f = new Path(path);
diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
index c53affbadf..4fee87ed7e 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
@@ -10,7 +10,6 @@ import java.util.Properties;
 import java.util.zip.GZIPInputStream;
 import java.util.zip.GZIPOutputStream;
 
-import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
 import org.apache.commons.codec.binary.Base64;
 import org.apache.commons.codec.binary.Base64OutputStream;
 import org.apache.commons.codec.binary.Hex;
@@ -27,6 +26,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
 import com.google.common.collect.Maps;
 import com.jayway.jsonpath.JsonPath;
 
+import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
 import net.minidev.json.JSONArray;
 import scala.collection.JavaConverters;
 import scala.collection.Seq;
@@ -57,7 +57,6 @@ public class DHPUtils {
 		return String.format("%s::%s", nsPrefix, DHPUtils.md5(originalId));
 	}
 
-
 	public static String generateUnresolvedIdentifier(final String pid, final String pidType) {
 
 		final String cleanedPid = CleaningFunctions.normalizePidValue(pidType, pid);

From 034304b33af2b8fdec46cafc8f3c81f4fb704c2e Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 26 Oct 2021 09:40:47 +0200
Subject: [PATCH 101/106] conflict resolved on merge

---
 .../java/eu/dnetlib/dhp/utils/DHPUtils.java   |  82 ++++++++----
 .../dhp/sx/bio/ebi/oozie_app/workflow.xml     |   4 +-
 .../dhp/sx/bio/pubmed/oozie_app/workflow.xml  |   2 +-
 .../oa/graph/raw/CopyHdfsOafApplication.java  | 118 ------------------
 .../raw/CopyHdfsOafSparkApplication.scala     |  74 +++++++++++
 .../common/AbstractMigrationApplication.java  |  23 +---
 .../oa/graph/copy_hdfs_oaf_parameters.json    |   6 +
 .../oa/graph/raw_all/oozie_app/workflow.xml   |   3 +-
 8 files changed, 147 insertions(+), 165 deletions(-)
 delete mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
 create mode 100644 dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafSparkApplication.scala

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
index 4fee87ed7e..66e4cb780f 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
@@ -1,36 +1,35 @@
 
 package eu.dnetlib.dhp.utils;
 
-import java.io.*;
-import java.nio.charset.StandardCharsets;
-import java.security.MessageDigest;
-import java.util.List;
-import java.util.Map;
-import java.util.Properties;
-import java.util.zip.GZIPInputStream;
-import java.util.zip.GZIPOutputStream;
-
-import org.apache.commons.codec.binary.Base64;
-import org.apache.commons.codec.binary.Base64OutputStream;
-import org.apache.commons.codec.binary.Hex;
-import org.apache.commons.io.IOUtils;
-import org.apache.hadoop.conf.Configuration;
-import org.apache.hadoop.fs.FileSystem;
-import org.apache.hadoop.fs.Path;
-import org.apache.spark.sql.Dataset;
-import org.apache.spark.sql.SaveMode;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
 import com.fasterxml.jackson.databind.ObjectMapper;
 import com.google.common.collect.Maps;
 import com.jayway.jsonpath.JsonPath;
-
+import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
 import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
 import net.minidev.json.JSONArray;
+import org.apache.commons.codec.binary.Hex;
+import org.apache.commons.io.IOUtils;
+import org.apache.commons.lang3.StringUtils;
+import org.apache.hadoop.conf.Configuration;
+import org.apache.hadoop.fs.FileSystem;
+import org.apache.hadoop.fs.Path;
+import org.apache.http.client.methods.CloseableHttpResponse;
+import org.apache.http.client.methods.HttpGet;
+import org.apache.http.impl.client.CloseableHttpClient;
+import org.apache.http.impl.client.HttpClients;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.SaveMode;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 import scala.collection.JavaConverters;
 import scala.collection.Seq;
 
+import java.io.*;
+import java.nio.charset.StandardCharsets;
+import java.security.MessageDigest;
+import java.util.*;
+import java.util.stream.Collectors;
+
 public class DHPUtils {
 
 	private static final Logger log = LoggerFactory.getLogger(DHPUtils.class);
@@ -53,6 +52,45 @@ public class DHPUtils {
 		}
 	}
 
+	/**
+	 * Retrieves from the metadata store manager application the list of paths associated with mdstores characterized
+	 * by he given format, layout, interpretation
+	 * @param mdstoreManagerUrl the URL of the mdstore manager service
+	 * @param format the mdstore format
+	 * @param layout the mdstore layout
+	 * @param interpretation the mdstore interpretation
+	 * @param includeEmpty include Empty mdstores
+	 * @return the set of hdfs paths
+	 * @throws IOException in case of HTTP communication issues
+	 */
+	public static Set<String> mdstorePaths(final String mdstoreManagerUrl,
+		final String format,
+		final String layout,
+		final String interpretation,
+		boolean includeEmpty) throws IOException {
+		final String url = mdstoreManagerUrl + "/mdstores/";
+		final ObjectMapper objectMapper = new ObjectMapper();
+
+		final HttpGet req = new HttpGet(url);
+
+		try (final CloseableHttpClient client = HttpClients.createDefault()) {
+			try (final CloseableHttpResponse response = client.execute(req)) {
+				final String json = IOUtils.toString(response.getEntity().getContent());
+				final MDStoreWithInfo[] mdstores = objectMapper.readValue(json, MDStoreWithInfo[].class);
+				return Arrays
+					.stream(mdstores)
+					.filter(md -> md.getFormat().equalsIgnoreCase(format))
+					.filter(md -> md.getLayout().equalsIgnoreCase(layout))
+					.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
+					.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
+					.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
+					.filter(md -> includeEmpty || md.getSize() > 0)
+					.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
+					.collect(Collectors.toSet());
+			}
+		}
+	}
+
 	public static String generateIdentifier(final String originalId, final String nsPrefix) {
 		return String.format("%s::%s", nsPrefix, DHPUtils.md5(originalId));
 	}
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/oozie_app/workflow.xml
index 73b1a3b608..4b47ae38e4 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/ebi/oozie_app/workflow.xml
@@ -52,7 +52,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>Incremental Download EBI Links</name>
-            <class>eu.dnetllib.dhp.sx.bio.ebi.SparkDownloadEBILinks</class>
+            <class>eu.dnetlib.dhp.sx.bio.ebi.SparkDownloadEBILinks</class>
             <jar>dhp-aggregation-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
@@ -85,7 +85,7 @@
             <master>yarn-cluster</master>
             <mode>cluster</mode>
             <name>Create OAF DataSet</name>
-            <class>eu.dnetllib.dhp.sx.bio.ebi.SparkEBILinksToOaf</class>
+            <class>eu.dnetlib.dhp.sx.bio.ebi.SparkEBILinksToOaf</class>
             <jar>dhp-aggregation-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/pubmed/oozie_app/workflow.xml b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/pubmed/oozie_app/workflow.xml
index 21fd2d1535..8915a090bd 100644
--- a/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/pubmed/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/sx/bio/pubmed/oozie_app/workflow.xml
@@ -30,7 +30,7 @@
             <master>yarn</master>
             <mode>cluster</mode>
             <name>Convert Baseline to OAF Dataset</name>
-            <class>eu.dnetllib.dhp.sx.bio.ebi.SparkCreateBaselineDataFrame</class>
+            <class>eu.dnetlib.dhp.sx.bio.ebi.SparkCreateBaselineDataFrame</class>
             <jar>dhp-aggregation-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory=${sparkExecutorMemory}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
deleted file mode 100644
index 31ebcbc6e5..0000000000
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafApplication.java
+++ /dev/null
@@ -1,118 +0,0 @@
-
-package eu.dnetlib.dhp.oa.graph.raw;
-
-import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
-
-import java.util.*;
-
-import org.apache.commons.io.IOUtils;
-import org.apache.spark.SparkConf;
-import org.apache.spark.api.java.JavaSparkContext;
-import org.apache.spark.api.java.function.FilterFunction;
-import org.apache.spark.api.java.function.FlatMapFunction;
-import org.apache.spark.api.java.function.MapFunction;
-import org.apache.spark.sql.Dataset;
-import org.apache.spark.sql.Encoders;
-import org.apache.spark.sql.SaveMode;
-import org.apache.spark.sql.SparkSession;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-import com.clearspring.analytics.util.Lists;
-import com.fasterxml.jackson.databind.ObjectMapper;
-
-import eu.dnetlib.dhp.application.ArgumentApplicationParser;
-import eu.dnetlib.dhp.common.HdfsSupport;
-import eu.dnetlib.dhp.common.vocabulary.VocabularyGroup;
-import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
-import eu.dnetlib.dhp.schema.common.EntityType;
-import eu.dnetlib.dhp.schema.common.ModelSupport;
-import eu.dnetlib.dhp.schema.oaf.Oaf;
-import eu.dnetlib.dhp.schema.oaf.Relation;
-import eu.dnetlib.dhp.utils.ISLookupClientFactory;
-import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
-import scala.Tuple2;
-
-public class CopyHdfsOafApplication extends AbstractMigrationApplication {
-
-	private static final Logger log = LoggerFactory.getLogger(CopyHdfsOafApplication.class);
-
-	private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
-
-	public static void main(final String[] args) throws Exception {
-		final ArgumentApplicationParser parser = new ArgumentApplicationParser(
-			IOUtils
-				.toString(
-					CopyHdfsOafApplication.class
-						.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json")));
-		parser.parseArgument(args);
-
-		final Boolean isSparkSessionManaged = Optional
-			.ofNullable(parser.get("isSparkSessionManaged"))
-			.map(Boolean::valueOf)
-			.orElse(Boolean.TRUE);
-		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
-
-		final String mdstoreManagerUrl = parser.get("mdstoreManagerUrl");
-		log.info("mdstoreManagerUrl: {}", mdstoreManagerUrl);
-
-		final String mdFormat = parser.get("mdFormat");
-		log.info("mdFormat: {}", mdFormat);
-
-		final String mdLayout = parser.get("mdLayout");
-		log.info("mdLayout: {}", mdLayout);
-
-		final String mdInterpretation = parser.get("mdInterpretation");
-		log.info("mdInterpretation: {}", mdInterpretation);
-
-		final String hdfsPath = parser.get("hdfsPath");
-		log.info("hdfsPath: {}", hdfsPath);
-
-		final Set<String> paths = mdstorePaths(mdstoreManagerUrl, mdFormat, mdLayout, mdInterpretation);
-
-		final SparkConf conf = new SparkConf();
-		conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer");
-		conf.registerKryoClasses(ModelSupport.getOafModelClasses());
-
-		final List<String> oafTypes = Lists.newArrayList(ModelSupport.oafTypes.keySet());
-
-		runWithSparkSession(conf, isSparkSessionManaged, spark -> processPaths(spark, oafTypes, hdfsPath, paths));
-	}
-
-	public static void processPaths(final SparkSession spark,
-		final List<String> oafTypes,
-		final String outputPath,
-		final Set<String> paths) {
-
-		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
-
-		log.info("Found {} mdstores", paths.size());
-		paths.forEach(log::info);
-
-		final String[] validPaths = paths
-			.stream()
-			.filter(p -> HdfsSupport.exists(p, sc.hadoopConfiguration()))
-			.toArray(String[]::new);
-		log.info("Non empty mdstores {}", validPaths.length);
-
-		if (validPaths.length > 0) {
-			// load the dataset
-			Dataset<Oaf> oaf = spark
-				.read()
-				.load(validPaths)
-				.as(Encoders.kryo(Oaf.class));
-
-			// dispatch each entity type individually in the respective graph subdirectory in append mode
-			for (String type : oafTypes) {
-				oaf
-					.filter((FilterFunction<Oaf>) o -> o.getClass().getSimpleName().toLowerCase().equals(type))
-					.map((MapFunction<Oaf, String>) OBJECT_MAPPER::writeValueAsString, Encoders.STRING())
-					.write()
-					.option("compression", "gzip")
-					.mode(SaveMode.Append)
-					.text(outputPath + "/" + type);
-			}
-		}
-	}
-
-}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafSparkApplication.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafSparkApplication.scala
new file mode 100644
index 0000000000..c7ad1890de
--- /dev/null
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/CopyHdfsOafSparkApplication.scala
@@ -0,0 +1,74 @@
+package eu.dnetlib.dhp.oa.graph.raw
+
+import com.fasterxml.jackson.databind.ObjectMapper
+import eu.dnetlib.dhp.application.ArgumentApplicationParser
+import eu.dnetlib.dhp.common.HdfsSupport
+import eu.dnetlib.dhp.schema.common.ModelSupport
+import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo
+import eu.dnetlib.dhp.schema.oaf.Oaf
+import eu.dnetlib.dhp.utils.DHPUtils
+import org.apache.commons.io.IOUtils
+import org.apache.commons.lang3.StringUtils
+import org.apache.http.client.methods.HttpGet
+import org.apache.http.impl.client.HttpClients
+import org.apache.spark.sql.{Encoder, Encoders, SaveMode, SparkSession}
+import org.apache.spark.{SparkConf, SparkContext}
+import org.slf4j.LoggerFactory
+
+import scala.collection.JavaConverters._
+import scala.io.Source
+
+object CopyHdfsOafSparkApplication {
+
+  def main(args: Array[String]): Unit = {
+    val log = LoggerFactory.getLogger(getClass)
+    val conf = new SparkConf()
+    val parser = new ArgumentApplicationParser(Source.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json")).mkString)
+    parser.parseArgument(args)
+
+    val spark =
+      SparkSession
+        .builder()
+        .config(conf)
+        .appName(getClass.getSimpleName)
+        .master(parser.get("master")).getOrCreate()
+
+    val sc: SparkContext = spark.sparkContext
+
+    val mdstoreManagerUrl = parser.get("mdstoreManagerUrl")
+    log.info("mdstoreManagerUrl: {}", mdstoreManagerUrl)
+
+    val mdFormat = parser.get("mdFormat")
+    log.info("mdFormat: {}", mdFormat)
+
+    val mdLayout = parser.get("mdLayout")
+    log.info("mdLayout: {}", mdLayout)
+
+    val mdInterpretation = parser.get("mdInterpretation")
+    log.info("mdInterpretation: {}", mdInterpretation)
+
+    val hdfsPath = parser.get("hdfsPath")
+    log.info("hdfsPath: {}", hdfsPath)
+
+    implicit val oafEncoder: Encoder[Oaf] = Encoders.kryo[Oaf]
+
+    val paths = DHPUtils.mdstorePaths(mdstoreManagerUrl, mdFormat, mdLayout, mdInterpretation, true).asScala
+
+    val validPaths: List[String] = paths.filter(p => HdfsSupport.exists(p, sc.hadoopConfiguration)).toList
+
+    if (validPaths.nonEmpty) {
+      val oaf = spark.read.load(validPaths: _*).as[Oaf]
+      val mapper = new ObjectMapper()
+      val l =ModelSupport.oafTypes.entrySet.asScala.map(e => e.getKey).toList
+      l.foreach(
+        e =>
+          oaf.filter(o => o.getClass.getSimpleName.equalsIgnoreCase(e))
+            .map(s => mapper.writeValueAsString(s))(Encoders.STRING)
+            .write
+            .option("compression", "gzip")
+            .mode(SaveMode.Append)
+            .text(s"$hdfsPath/${e}")
+      )
+    }
+  }
+}
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
index 8cd495e08a..cba64899b5 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/raw/common/AbstractMigrationApplication.java
@@ -26,6 +26,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
 
 import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
 import eu.dnetlib.dhp.schema.oaf.Oaf;
+import eu.dnetlib.dhp.utils.DHPUtils;
 
 public class AbstractMigrationApplication implements Closeable {
 
@@ -71,27 +72,7 @@ public class AbstractMigrationApplication implements Closeable {
 		final String format,
 		final String layout,
 		final String interpretation) throws IOException {
-		final String url = mdstoreManagerUrl + "/mdstores/";
-		final ObjectMapper objectMapper = new ObjectMapper();
-
-		final HttpGet req = new HttpGet(url);
-
-		try (final CloseableHttpClient client = HttpClients.createDefault()) {
-			try (final CloseableHttpResponse response = client.execute(req)) {
-				final String json = IOUtils.toString(response.getEntity().getContent());
-				final MDStoreWithInfo[] mdstores = objectMapper.readValue(json, MDStoreWithInfo[].class);
-				return Arrays
-					.stream(mdstores)
-					.filter(md -> md.getFormat().equalsIgnoreCase(format))
-					.filter(md -> md.getLayout().equalsIgnoreCase(layout))
-					.filter(md -> md.getInterpretation().equalsIgnoreCase(interpretation))
-					.filter(md -> StringUtils.isNotBlank(md.getHdfsPath()))
-					.filter(md -> StringUtils.isNotBlank(md.getCurrentVersion()))
-					.filter(md -> md.getSize() > 0)
-					.map(md -> md.getHdfsPath() + "/" + md.getCurrentVersion() + "/store")
-					.collect(Collectors.toSet());
-			}
-		}
+		return DHPUtils.mdstorePaths(mdstoreManagerUrl, format, layout, interpretation, false);
 	}
 
 	private Configuration getConf() {
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
index 1d89017c52..d1b16b09a6 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/copy_hdfs_oaf_parameters.json
@@ -23,6 +23,12 @@
 		"paramDescription": "metadata layout",
 		"paramRequired": true
 	},
+	{
+		"paramName": "m",
+		"paramLongName": "master",
+		"paramDescription": "should be yarn or local",
+		"paramRequired": true
+	},
 	{
 		"paramName": "i",
 		"paramLongName": "mdInterpretation",
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
index 137c69ed83..307e262672 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/raw_all/oozie_app/workflow.xml
@@ -553,7 +553,7 @@
             <master>yarn</master>
             <mode>cluster</mode>
             <name>ImportOAF_hdfs_graph</name>
-            <class>eu.dnetlib.dhp.oa.graph.raw.CopyHdfsOafApplication</class>
+            <class>eu.dnetlib.dhp.oa.graph.raw.CopyHdfsOafSparkApplication</class>
             <jar>dhp-graph-mapper-${projectVersion}.jar</jar>
             <spark-opts>
                 --executor-memory ${sparkExecutorMemory}
@@ -568,6 +568,7 @@
             <arg>--mdstoreManagerUrl</arg><arg>${mdstoreManagerUrl}</arg>
             <arg>--mdFormat</arg><arg>OAF</arg>
             <arg>--mdLayout</arg><arg>store</arg>
+            <arg>--master</arg><arg>yarn</arg>
             <arg>--mdInterpretation</arg><arg>graph</arg>
         </spark>
         <ok to="wait_graphs"/>

From aafdffa6b3c3d423a1b9a0085b4d6540bb723e13 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 26 Oct 2021 09:45:46 +0200
Subject: [PATCH 102/106] resolved conflict

---
 .../java/eu/dnetlib/dhp/utils/DHPUtils.java   | 26 ++++++++++---------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
index 66e4cb780f..5a59bc0dfe 100644
--- a/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
+++ b/dhp-common/src/main/java/eu/dnetlib/dhp/utils/DHPUtils.java
@@ -1,12 +1,12 @@
 
 package eu.dnetlib.dhp.utils;
 
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.google.common.collect.Maps;
-import com.jayway.jsonpath.JsonPath;
-import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
-import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
-import net.minidev.json.JSONArray;
+import java.io.*;
+import java.nio.charset.StandardCharsets;
+import java.security.MessageDigest;
+import java.util.*;
+import java.util.stream.Collectors;
+
 import org.apache.commons.codec.binary.Hex;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.lang3.StringUtils;
@@ -21,15 +21,17 @@ import org.apache.spark.sql.Dataset;
 import org.apache.spark.sql.SaveMode;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
+
+import com.fasterxml.jackson.databind.ObjectMapper;
+import com.google.common.collect.Maps;
+import com.jayway.jsonpath.JsonPath;
+
+import eu.dnetlib.dhp.schema.mdstore.MDStoreWithInfo;
+import eu.dnetlib.dhp.schema.oaf.utils.CleaningFunctions;
+import net.minidev.json.JSONArray;
 import scala.collection.JavaConverters;
 import scala.collection.Seq;
 
-import java.io.*;
-import java.nio.charset.StandardCharsets;
-import java.security.MessageDigest;
-import java.util.*;
-import java.util.stream.Collectors;
-
 public class DHPUtils {
 
 	private static final Logger log = LoggerFactory.getLogger(DHPUtils.class);

From 4acfa8fa2e317874caabe209f1d6c685b36d9a66 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 26 Oct 2021 17:51:20 +0200
Subject: [PATCH 103/106] Scholexplorer Datasource Aggregation: - Added
 collectedfrom in the inverse relation generated Relation resolution: -
 increased number of partitions in workflow.xml - using classid instead of
 classname to build the pid-dnetId mapping

---
 .../java/eu/dnetlib/dhp/collection/CollectionUtils.scala    | 6 ++++++
 .../dhp/oa/graph/resolution/SparkResolveRelation.scala      | 4 ++--
 .../dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml  | 2 +-
 3 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
index e212d7e2ad..11ecfd6cb6 100644
--- a/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
+++ b/dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/CollectionUtils.scala
@@ -34,6 +34,12 @@ object CollectionUtils {
         inverse.setRelType(currentRel.getRelType)
         inverse.setSubRelType(currentRel.getSubReltype)
         inverse.setRelClass(currentRel.getInverseRelClass)
+        inverse.setCollectedfrom(r.getCollectedfrom)
+        inverse.setDataInfo(r.getDataInfo)
+        inverse.setProperties(r.getProperties)
+        inverse.setLastupdatetimestamp(r.getLastupdatetimestamp)
+        inverse.setValidated(r.getValidated)
+        inverse.setValidationDate(r.getValidationDate)
         return List(r, inverse)
       }
     }
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
index e87f46b00a..5ca7d9782d 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
@@ -104,14 +104,14 @@ object SparkResolveRelation {
       JObject(pids) <- json \\ "instance" \ "pid"
       JField("value", JString(pidValue)) <- pids
       JField("qualifier", JObject(qualifier)) <- pids
-      JField("classname", JString(pidType)) <- qualifier
+      JField("classid", JString(pidType)) <- qualifier
     } yield (pidValue, pidType)
 
     val alternateIds: List[(String, String)] = for {
       JObject(pids) <- json \\ "alternateIdentifier"
       JField("value", JString(pidValue)) <- pids
       JField("qualifier", JObject(qualifier)) <- pids
-      JField("classname", JString(pidType)) <- qualifier
+      JField("classid", JString(pidType)) <- qualifier
     } yield (pidValue, pidType)
 
     (id, result ::: alternateIds)
diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
index e9e1a8edea..31cc53ae3c 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
@@ -24,7 +24,7 @@
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
                 --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=3000
+                --conf spark.sql.shuffle.partitions=8000
                 --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}

From 1be9aa0a5f2d747ad7eb41191956d14a4f3c0943 Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Tue, 26 Oct 2021 17:52:20 +0200
Subject: [PATCH 104/106] Removed filter of datacite items from the raw graph
 merging phase, Datacite is not an actionset anymore in beta

---
 .../dhp/oa/graph/merge/MergeGraphTableSparkJob.java        | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/merge/MergeGraphTableSparkJob.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/merge/MergeGraphTableSparkJob.java
index ef419a042e..474944260b 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/merge/MergeGraphTableSparkJob.java
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/merge/MergeGraphTableSparkJob.java
@@ -127,13 +127,6 @@ public class MergeGraphTableSparkJob {
 				}
 			}, Encoders.bean(p_clazz))
 			.filter((FilterFunction<P>) Objects::nonNull)
-			.filter((FilterFunction<P>) o -> {
-				HashSet<String> collectedFromNames = Optional
-					.ofNullable(o.getCollectedfrom())
-					.map(c -> c.stream().map(KeyValue::getValue).collect(Collectors.toCollection(HashSet::new)))
-					.orElse(new HashSet<>());
-				return !collectedFromNames.contains("Datacite");
-			})
 			.write()
 			.mode(SaveMode.Overwrite)
 			.option("compression", "gzip")

From d9cbca83f7911b53190a9f999f5e02a7f00382ac Mon Sep 17 00:00:00 2001
From: Sandro La Bruzzo <sandro.labruzzo@isti.cnr.it>
Date: Thu, 28 Oct 2021 16:13:24 +0200
Subject: [PATCH 105/106] moved filter on next phase

---
 .../dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
index 5ca7d9782d..db93bc43fa 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
+++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/resolution/SparkResolveRelation.scala
@@ -75,7 +75,7 @@ object SparkResolveRelation {
         if (targetResolved != null && targetResolved._1.nonEmpty)
           currentRelation.setTarget(targetResolved._1)
         currentRelation
-    }.filter(r => !r.getSource.startsWith("unresolved") && !r.getTarget.startsWith("unresolved"))
+    }
       .write
       .mode(SaveMode.Overwrite)
       .save(s"$workingPath/relation_resolved")
@@ -88,6 +88,7 @@ object SparkResolveRelation {
     fs.rename(new Path(s"$graphBasePath/relation"), new Path(s"$workingPath/relation"))
 
     spark.read.load(s"$workingPath/relation_resolved").as[Relation]
+      .filter(r => !r.getSource.startsWith("unresolved") && !r.getTarget.startsWith("unresolved"))
       .map(r => mapper.writeValueAsString(r))
       .write
       .option("compression", "gzip")

From 1225ba0b9223ae6049ea5c80772dcf72407a01b8 Mon Sep 17 00:00:00 2001
From: Claudio Atzori <claudio.atzori@isti.cnr.it>
Date: Thu, 28 Oct 2021 16:18:17 +0200
Subject: [PATCH 106/106] [resolution] increasing number of partitions to avoid
 OOM

---
 .../eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml   | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
index 31cc53ae3c..52f0e6e9d0 100644
--- a/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
+++ b/dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/resolution/oozie_app/workflow.xml
@@ -24,7 +24,7 @@
                 --executor-cores=${sparkExecutorCores}
                 --driver-memory=${sparkDriverMemory}
                 --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.shuffle.partitions=8000
+                --conf spark.sql.shuffle.partitions=15000
                 --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}