From 29f69f2f89d55213b2e07aa618b9113299c76939 Mon Sep 17 00:00:00 2001 From: dimitrispie Date: Fri, 26 Nov 2021 15:22:04 +0200 Subject: [PATCH] Sprint 4 --- .../scripts/step16-createIndicatorsTables.sql | 405 ++++++++++-------- 1 file changed, 237 insertions(+), 168 deletions(-) diff --git a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql index 0ea4a5adc5..15f2f09962 100644 --- a/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql +++ b/dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16-createIndicatorsTables.sql @@ -8,7 +8,7 @@ join result_instance ri on ri.id = p.id join datasource on datasource.id = ri.hostedby where datasource.type like '%Repository%' and (ri.accessright = 'Open Access' -or ri.accessright = 'Embargo')) tmp +or ri.accessright = 'Embargo' or ri.accessright = 'Open Source')) tmp on p.id= tmp.id; create table indi_pub_grey_lit stored as parquet as @@ -41,178 +41,178 @@ join datasource on datasource.id = ri.hostedby where datasource.id like '%doajarticles%') tmp on p.id= tmp.id; -create table indi_project_pubs_count stored as parquet as -select pr.id id, count(p.id) total_pubs from project_results pr -join publication p on p.id=pr.result -group by pr.id; +--create table indi_project_pubs_count stored as parquet as +--select pr.id id, count(p.id) total_pubs from project_results pr +--join publication p on p.id=pr.result +--group by pr.id; -create table indi_project_datasets_count stored as parquet as -select pr.id id, count(d.id) total_datasets from project_results pr -join dataset d on d.id=pr.result -group by pr.id; +--create table indi_project_datasets_count stored as parquet as +--select pr.id id, count(d.id) total_datasets from project_results pr +--join dataset d on d.id=pr.result +--group by pr.id; -create table indi_project_software_count stored as parquet as -select pr.id id, count(s.id) total_software from project_results pr -join software s on s.id=pr.result -group by pr.id; +--create table indi_project_software_count stored as parquet as +--select pr.id id, count(s.id) total_software from project_results pr +--join software s on s.id=pr.result +--group by pr.id; -create table indi_project_otherresearch_count stored as parquet as -select pr.id id, count(o.id) total_other from project_results pr -join otherresearchproduct o on o.id=pr.result -group by pr.id; +--create table indi_project_otherresearch_count stored as parquet as +--select pr.id id, count(o.id) total_other from project_results pr +--join otherresearchproduct o on o.id=pr.result +--group by pr.id; -create table indi_pub_avg_year_country_oa stored as parquet as -select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, -round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA - from - (SELECT year, country, SUM(CASE - WHEN bestlicence='Open Access' THEN 1 - ELSE 0 - END) AS OpenAccess, SUM(CASE - WHEN bestlicence<>'Open Access' THEN 1 - ELSE 0 - END) AS NonOpenAccess - FROM publication p - join result_organization ro on p.id=ro.id - join organization o on o.id=ro.organization - where cast(year as int)>=2003 and cast(year as int)<=2021 - group by year, country) tmp; +--create table indi_pub_avg_year_country_oa stored as parquet as +--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, +--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA + --from + --(SELECT year, country, SUM(CASE + --WHEN bestlicence='Open Access' THEN 1 + --ELSE 0 + --END) AS OpenAccess, SUM(CASE + --WHEN bestlicence<>'Open Access' THEN 1 + --ELSE 0 + --END) AS NonOpenAccess + --FROM publication p + --join result_organization ro on p.id=ro.id + --join organization o on o.id=ro.organization + --where cast(year as int)>=2003 and cast(year as int)<=2021 + --group by year, country) tmp; -create table indi_dataset_avg_year_country_oa stored as parquet as -select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, -round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA - from - (SELECT year, country, SUM(CASE - WHEN bestlicence='Open Access' THEN 1 - ELSE 0 - END) AS OpenAccess, SUM(CASE - WHEN bestlicence<>'Open Access' THEN 1 - ELSE 0 - END) AS NonOpenAccess - FROM dataset d - join result_organization ro on d.id=ro.id - join organization o on o.id=ro.organization - where cast(year as int)>=2003 and cast(year as int)<=2021 - group by year, country) tmp; +--create table indi_dataset_avg_year_country_oa stored as parquet as +--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, +--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA +--from + --(SELECT year, country, SUM(CASE + --WHEN bestlicence='Open Access' THEN 1 + --ELSE 0 + --END) AS OpenAccess, SUM(CASE + --WHEN bestlicence<>'Open Access' THEN 1 + --ELSE 0 + --END) AS NonOpenAccess + --FROM dataset d + --join result_organization ro on d.id=ro.id + --join organization o on o.id=ro.organization + --where cast(year as int)>=2003 and cast(year as int)<=2021 + --group by year, country) tmp; -create table indi_software_avg_year_country_oa stored as parquet as -select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, -round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA - from - (SELECT year, country, SUM(CASE - WHEN bestlicence='Open Access' THEN 1 - ELSE 0 - END) AS OpenAccess, SUM(CASE - WHEN bestlicence<>'Open Access' THEN 1 - ELSE 0 - END) AS NonOpenAccess - FROM software s - join result_organization ro on s.id=ro.id - join organization o on o.id=ro.organization - where cast(year as int)>=2003 and cast(year as int)<=2021 - group by year, country) tmp; +--create table indi_software_avg_year_country_oa stored as parquet as +--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, +--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA +--from +-- (SELECT year, country, SUM(CASE + --WHEN bestlicence='Open Access' THEN 1 +-- ELSE 0 +--END) AS OpenAccess, SUM(CASE +-- WHEN bestlicence<>'Open Access' THEN 1 +-- ELSE 0 +-- END) AS NonOpenAccess +-- FROM software s +-- join result_organization ro on s.id=ro.id +-- join organization o on o.id=ro.organization +-- where cast(year as int)>=2003 and cast(year as int)<=2021 +-- group by year, country) tmp; -create table indi_other_avg_year_country_oa stored as parquet as -select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, -round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA - from - (SELECT year, country, SUM(CASE - WHEN bestlicence='Open Access' THEN 1 - ELSE 0 - END) AS OpenAccess, SUM(CASE - WHEN bestlicence<>'Open Access' THEN 1 - ELSE 0 - END) AS NonOpenAccess - FROM otherresearchproduct orp - join result_organization ro on orp.id=ro.id - join organization o on o.id=ro.organization - where cast(year as int)>=2003 and cast(year as int)<=2021 - group by year, country) tmp; +--create table indi_other_avg_year_country_oa stored as parquet as +--select year, country, round(OpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageOA, +--round(NonOpenAccess/(OpenAccess+NonOpenAccess)*100,3) as averageNonOA +-- from +-- (SELECT year, country, SUM(CASE +-- WHEN bestlicence='Open Access' THEN 1 +-- ELSE 0 +-- END) AS OpenAccess, SUM(CASE +-- WHEN bestlicence<>'Open Access' THEN 1 +-- ELSE 0 +-- END) AS NonOpenAccess +-- FROM otherresearchproduct orp +-- join result_organization ro on orp.id=ro.id +-- join organization o on o.id=ro.organization +-- where cast(year as int)>=2003 and cast(year as int)<=2021 +-- group by year, country) tmp; -create table indi_pub_avg_year_context_oa stored as parquet as -with total as -(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from publication_concepts pc -join context c on pc.concept like concat('%',c.id,'%') -join publication p on p.id=pc.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by c.name, year ) -select year, name, round(no_of_pubs/total*100,3) averageofpubs -from total; +--create table indi_pub_avg_year_context_oa stored as parquet as +--with total as +--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from publication_concepts pc +--join context c on pc.concept like concat('%',c.id,'%') +--join publication p on p.id=pc.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by c.name, year ) +--select year, name, round(no_of_pubs/total*100,3) averageofpubs +--from total; -create table indi_dataset_avg_year_context_oa stored as parquet as -with total as -(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from dataset_concepts pc -join context c on pc.concept like concat('%',c.id,'%') -join dataset p on p.id=pc.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by c.name, year ) -select year, name, round(no_of_pubs/total*100,3) averageofdataset -from total; +--create table indi_dataset_avg_year_context_oa stored as parquet as +--with total as +--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from dataset_concepts pc +--join context c on pc.concept like concat('%',c.id,'%') +--join dataset p on p.id=pc.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by c.name, year ) +--select year, name, round(no_of_pubs/total*100,3) averageofdataset +--from total; -create table indi_software_avg_year_context_oa stored as parquet as -with total as -(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from software_concepts pc -join context c on pc.concept like concat('%',c.id,'%') -join software p on p.id=pc.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by c.name, year ) -select year, name, round(no_of_pubs/total*100,3) averageofsoftware -from total; +--create table indi_software_avg_year_context_oa stored as parquet as +--with total as +--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from software_concepts pc +--join context c on pc.concept like concat('%',c.id,'%') +--join software p on p.id=pc.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by c.name, year ) +--select year, name, round(no_of_pubs/total*100,3) averageofsoftware +--from total; -create table indi_other_avg_year_context_oa stored as parquet as -with total as -(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from otherresearchproduct_concepts pc -join context c on pc.concept like concat('%',c.id,'%') -join otherresearchproduct p on p.id=pc.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by c.name, year ) -select year, name, round(no_of_pubs/total*100,3) averageofother -from total; +--create table indi_other_avg_year_context_oa stored as parquet as +--with total as +--(select count(distinct pc.id) no_of_pubs, year, c.name name, sum(count(distinct pc.id)) over(PARTITION by year) as total from otherresearchproduct_concepts pc +--join context c on pc.concept like concat('%',c.id,'%') +--join otherresearchproduct p on p.id=pc.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by c.name, year ) +--select year, name, round(no_of_pubs/total*100,3) averageofother +--from total; -create table indi_other_avg_year_content_oa stored as parquet as -with total as -(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total -from otherresearchproduct_datasources pd -join datasource d on datasource=d.id -join otherresearchproduct p on p.id=pd.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by d.type, year) -select year, type, round(no_of_pubs/total*100,3) averageOfOtherresearchproduct -from total; +--create table indi_other_avg_year_content_oa stored as parquet as +--with total as +--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total +--from otherresearchproduct_datasources pd +--join datasource d on datasource=d.id +--join otherresearchproduct p on p.id=pd.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by d.type, year) +--select year, type, round(no_of_pubs/total*100,3) averageOfOtherresearchproduct +--from total; -create table indi_software_avg_year_content_oa stored as parquet as -with total as -(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total -from software_datasources pd -join datasource d on datasource=d.id -join software p on p.id=pd.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by d.type, year) -select year, type, round(no_of_pubs/total*100,3) averageOfSoftware -from total; +--create table indi_software_avg_year_content_oa stored as parquet as +--with total as +--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total +--from software_datasources pd +--join datasource d on datasource=d.id +--join software p on p.id=pd.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by d.type, year) +--select year, type, round(no_of_pubs/total*100,3) averageOfSoftware +--from total; -create table indi_dataset_avg_year_content_oa stored as parquet as -with total as -(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total -from dataset_datasources pd -join datasource d on datasource=d.id -join dataset p on p.id=pd.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by d.type, year) -select year, type, round(no_of_pubs/total*100,3) averageOfDatasets -from total; +--create table indi_dataset_avg_year_content_oa stored as parquet as +--with total as +--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total +--from dataset_datasources pd +--join datasource d on datasource=d.id +--join dataset p on p.id=pd.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by d.type, year) +--select year, type, round(no_of_pubs/total*100,3) averageOfDatasets +--from total; -create table indi_pub_avg_year_content_oa stored as parquet as -with total as -(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total -from publication_datasources pd -join datasource d on datasource=d.id -join publication p on p.id=pd.id -where cast(year as int)>=2003 and cast(year as int)<=2021 -group by d.type, year) -select year, type, round(no_of_pubs/total*100,3) averageOfPubs -from total; +--create table indi_pub_avg_year_content_oa stored as parquet as +--with total as +--(select count(distinct pd.id) no_of_pubs, year, d.type type, sum(count(distinct pd.id)) over(PARTITION by year) as total +--from publication_datasources pd +--join datasource d on datasource=d.id +--join publication p on p.id=pd.id +--where cast(year as int)>=2003 and cast(year as int)<=2021 +--group by d.type, year) +--select year, type, round(no_of_pubs/total*100,3) averageOfPubs +--from total; create table indi_pub_has_cc_licence stored as parquet as select distinct p.id, (case when lic='' or lic is null then 0 else 1 end) as has_cc_license @@ -231,11 +231,40 @@ join publication_licenses as license on license.id = p.id WHERE lower(parse_url(license.type, 'HOST')) = 'creativecommons.org') tmp on p.id= tmp.id; +-- EOSC-TR1.1-02M: +-- ## Indicator: has_cc_license. Creative Commons licensing has become a +-- de facto standard in scholarly communication and is promoted by many initiatives +-- like Plan S. This indicator might be only useful when applied +-- to openly available publications. +create table indi_pub_has_cc_licence_tr stored as parquet as +select distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_tr +from publication p +left outer join (select p.id, license.type as lic from publication p +join publication_licenses as license on license.id = p.id +where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp +on p.id= tmp.id + +-- #EOSC-F2-01M_cc Rich metadata for scholarly publications +-- ## Indicator: has_cc_license. Creative Commons licensing has become a +-- de facto standard in scholarly communication and is promoted by many initiatives +-- like Plan S. This indicator might be only useful when applied +-- to openly available publications. + +-- Same indicator as EOSC-TR1.1-02M (Najko's instructions) +-- create table indi_pub_has_cc_licence_f stored as parquet as +-- select +-- distinct p.id, case when lic='' or lic is null then 0 else 1 end as has_cc_license_f +-- from publication p +-- left outer join (selectp.id,license.type as lic from publication p +-- join publication_licenses as license on license.id = p.id +-- where lower(license.type) LIKE '%creativecommons.org%' OR lower(license.type) LIKE '%cc-%') tmp +-- on p.id= tmp.id + create table indi_pub_has_abstract stored as parquet as select distinct publication.id, coalesce(abstract, 1) has_abstract from publication; -create table indi_with_orcid stored as parquet as +create table indi_result_with_orcid stored as parquet as select distinct r.id, coalesce(has_orcid, 0) as has_orcid from result r left outer join (select id, 1 as has_orcid from result_orcid) tmp @@ -270,13 +299,53 @@ join tmp as o2 on o1.result=o2.result where o1.id<>o2.id group by o1.id, o2.id, o1.type -create table indi_result_org_country_collab stored as parquet as -with tmp as -(select o.id as id, o.country , ro.id as result,r.type from organization o -join result_organization ro on o.id=ro.organization -join result r on r.id=ro.id where o.country <> 'UNKNOWN') -select o1.id org1,o2.country country2, o1.type, count(distinct o1.result) as collaborations -from tmp as o1 -join tmp as o2 on o1.result=o2.result -where o1.id<>o2.id and o1.country<>o2.country -group by o1.id, o1.type,o2.country +create table indi_pub_diamond stored as parquet as +select distinct pd.id, coalesce(in_diamond_journal, 0) as in_diamond_journal +from publication_datasources pd +left outer join ( +select pd.id, 1 as in_diamond_journal from publication_datasources pd +join datasource d on d.id=pd.datasource +join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) +and (ps.journal_is_in_doaj=true or ps.journal_is_oa=true) and ps.has_apc=false) tmp +on pd.id=tmp.id + +create table indi_pub_hybrid stored as parquet as +select distinct pd.id, coalesce(is_hybrid, 0) as is_hybrid +from publication_datasources pd +left outer join ( +select pd.id, 1 as is_hybrid from publication_datasources pd +join datasource d on d.id=pd.datasource +join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) +and (ps.journal_is_in_doaj=false and ps.journal_is_oa=false)) tmp +on pd.id=tmp.id + +create table indi_is_gold_oa stored as parquet as +(select distinct pd.id, coalesce(gold_oa, 0) as gold_oa +from publication_datasources pd +left outer join ( +select pd.id, 1 as gold_oa from publication_datasources pd +join datasource d on d.id=pd.datasource +join stats_ext.plan_s_jn ps on (ps.issn_print=d.issn_printed or ps.issn_online=d.issn_online) +where ps.journal_is_in_doaj is true or ps.journal_is_oa is true) tmp +on pd.id=tmp.id) + + +create table indi_pub_in_transformative stored as parquet as +select distinct pd.id, coalesce(is_transformative, 0) as is_transformative +from publication pd +left outer join ( +select pd.id, 1 as is_transformative from publication_datasources pd +join datasource d on d.id=pd.datasource +join stats_ext.plan_s_jn ps where (ps.issn_print=d.issn_printed and ps.issn_online=d.issn_online) +and ps.is_transformative_journal=true) tmp +on pd.id=tmp.id + +create table indi_pub_closed_other_open stored as parquet as +select distinct ri.id, coalesce(pub_closed_other_open, 0) as pub_closed_other_open from result_instance ri +left outer join +(select ri.id, 1 as pub_closed_other_open from result_instance ri +join publication p on p.id=ri.id +join datasource d on ri.hostedby=d.id +where d.type like '%Journal%' and ri.accessright='Closed Access' and +(p.bestlicence='Open Access' or p.bestlicence='Open Source')) tmp +on tmp.id=ri.id \ No newline at end of file