forked from D-Net/dnet-hadoop
Merge branch 'master' into broker
This commit is contained in:
commit
0a0f62bd01
|
@ -62,8 +62,6 @@ public abstract class Oaf implements Serializable {
|
|||
.distinct() // relies on KeyValue.equals
|
||||
.collect(Collectors.toList()));
|
||||
|
||||
mergeOAFDataInfo(o);
|
||||
|
||||
setLastupdatetimestamp(
|
||||
Math
|
||||
.max(
|
||||
|
|
|
@ -351,8 +351,6 @@ public class Project extends OafEntity implements Serializable {
|
|||
? p.getFundedamount()
|
||||
: fundedamount;
|
||||
|
||||
// programme = mergeLists(programme, p.getProgramme());
|
||||
|
||||
h2020classification = mergeLists(h2020classification, p.getH2020classification());
|
||||
|
||||
mergeOAFDataInfo(e);
|
||||
|
|
|
@ -108,7 +108,7 @@ public class SparkResultToCommunityFromOrganizationJob {
|
|||
.stream()
|
||||
.map(con -> con.getId())
|
||||
.collect(Collectors.toList());
|
||||
Result res = new Result();
|
||||
R res = (R) ret.getClass().newInstance();
|
||||
res.setId(ret.getId());
|
||||
List<Context> propagatedContexts = new ArrayList<>();
|
||||
for (String cId : communitySet) {
|
||||
|
|
|
@ -130,7 +130,7 @@ public class SparkResultToCommunityThroughSemRelJob {
|
|||
})
|
||||
.filter(Objects::nonNull)
|
||||
.collect(Collectors.toList());
|
||||
Result r = new Result();
|
||||
R r = (R) ret.getClass().newInstance();
|
||||
r.setId(ret.getId());
|
||||
r.setContext(contextList);
|
||||
ret.mergeFrom(r);
|
||||
|
|
|
@ -24,7 +24,6 @@ import org.slf4j.LoggerFactory;
|
|||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.orcidtoresultfromsemrel.OrcidPropagationJobTest;
|
||||
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||
|
||||
public class ResultToCommunityJobTest {
|
||||
|
@ -66,7 +65,7 @@ public class ResultToCommunityJobTest {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void test1() throws Exception {
|
||||
public void testSparkResultToCommunityThroughSemRelJob() throws Exception {
|
||||
SparkResultToCommunityThroughSemRelJob
|
||||
.main(
|
||||
new String[] {
|
||||
|
|
|
@ -54,6 +54,13 @@
|
|||
<artifactId>spark-solr</artifactId>
|
||||
</dependency>
|
||||
|
||||
<!-- the solr-test-framework requires the old junit:junit test framework -->
|
||||
<dependency>
|
||||
<groupId>junit</groupId>
|
||||
<artifactId>junit</artifactId>
|
||||
<version>4.12</version>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.apache.solr</groupId>
|
||||
<artifactId>solr-test-framework</artifactId>
|
||||
|
@ -140,6 +147,12 @@
|
|||
<dependency>
|
||||
<groupId>org.apache.zookeeper</groupId>
|
||||
<artifactId>zookeeper</artifactId>
|
||||
<exclusions>
|
||||
<exclusion>
|
||||
<groupId>junit</groupId>
|
||||
<artifactId>junit</artifactId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
|
||||
|
||||
|
|
|
@ -0,0 +1,52 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision.utils;
|
||||
|
||||
import java.util.Comparator;
|
||||
import java.util.Optional;
|
||||
|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants;
|
||||
import eu.dnetlib.dhp.schema.common.ModelSupport;
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
|
||||
public class AuthorPidTypeComparator implements Comparator<StructuredProperty> {
|
||||
|
||||
@Override
|
||||
public int compare(StructuredProperty left, StructuredProperty right) {
|
||||
|
||||
String lClass = Optional
|
||||
.ofNullable(left)
|
||||
.map(StructuredProperty::getQualifier)
|
||||
.map(Qualifier::getClassid)
|
||||
.orElse(null);
|
||||
|
||||
String rClass = Optional
|
||||
.ofNullable(right)
|
||||
.map(StructuredProperty::getQualifier)
|
||||
.map(Qualifier::getClassid)
|
||||
.orElse(null);
|
||||
|
||||
if (lClass == null && rClass == null)
|
||||
return 0;
|
||||
if (lClass == null)
|
||||
return 1;
|
||||
if (rClass == null)
|
||||
return -1;
|
||||
|
||||
if (lClass.equals(rClass))
|
||||
return 0;
|
||||
|
||||
if (lClass.equals(ModelConstants.ORCID))
|
||||
return -1;
|
||||
if (rClass.equals(ModelConstants.ORCID))
|
||||
return 1;
|
||||
|
||||
if (lClass.equals(ModelConstants.ORCID_PENDING))
|
||||
return -1;
|
||||
if (rClass.equals(ModelConstants.ORCID_PENDING))
|
||||
return 1;
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
}
|
|
@ -254,6 +254,18 @@ public class XmlRecordFactory implements Serializable {
|
|||
p -> p,
|
||||
(p1, p2) -> p1))
|
||||
.values()
|
||||
.stream()
|
||||
.collect(
|
||||
Collectors
|
||||
.groupingBy(
|
||||
p -> p.getValue(),
|
||||
Collectors
|
||||
.mapping(
|
||||
p -> p,
|
||||
Collectors.minBy(new AuthorPidTypeComparator()))))
|
||||
.values()
|
||||
.stream()
|
||||
.map(op -> op.get())
|
||||
.forEach(
|
||||
sp -> {
|
||||
String pidType = getAuthorPidType(sp.getQualifier().getClassid());
|
||||
|
|
|
@ -6,15 +6,13 @@ import org.apache.solr.client.solrj.response.UpdateResponse;
|
|||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import junit.framework.Assert;
|
||||
|
||||
public class SolrAdminApplicationTest extends SolrTest {
|
||||
|
||||
@Test
|
||||
public void testPing() throws Exception {
|
||||
SolrPingResponse pingResponse = miniCluster.getSolrClient().ping();
|
||||
log.info("pingResponse: '{}'", pingResponse.getStatus());
|
||||
Assert.assertTrue(pingResponse.getStatus() == 0);
|
||||
Assertions.assertTrue(pingResponse.getStatus() == 0);
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
|
@ -14,33 +14,33 @@ import org.junit.jupiter.api.Assertions;
|
|||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
|
||||
import com.fasterxml.jackson.databind.DeserializationFeature;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.oa.provision.model.JoinedEntity;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ContextMapper;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.XmlRecordFactory;
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
|
||||
//TODO to enable it we need to update the joined_entity.json test file
|
||||
@Disabled
|
||||
public class XmlRecordFactoryTest {
|
||||
|
||||
private static final String otherDsTypeId = "scholarcomminfra,infospace,pubsrepository::mock,entityregistry,entityregistry::projects,entityregistry::repositories,websource";
|
||||
|
||||
private static ObjectMapper OBJECT_MAPPER = new ObjectMapper()
|
||||
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
|
||||
@Test
|
||||
public void testXMLRecordFactory() throws IOException, DocumentException {
|
||||
|
||||
String json = IOUtils.toString(getClass().getResourceAsStream("joined_entity.json"));
|
||||
|
||||
assertNotNull(json);
|
||||
JoinedEntity je = new ObjectMapper().readValue(json, JoinedEntity.class);
|
||||
assertNotNull(je);
|
||||
|
||||
ContextMapper contextMapper = new ContextMapper();
|
||||
|
||||
XmlRecordFactory xmlRecordFactory = new XmlRecordFactory(contextMapper, false, XmlConverterJob.schemaLocation,
|
||||
otherDsTypeId);
|
||||
|
||||
String xml = xmlRecordFactory.build(je);
|
||||
Publication p = OBJECT_MAPPER
|
||||
.readValue(IOUtils.toString(getClass().getResourceAsStream("publication.json")), Publication.class);
|
||||
|
||||
String xml = xmlRecordFactory.build(new JoinedEntity<>(p));
|
||||
|
||||
assertNotNull(xml);
|
||||
|
||||
|
@ -48,6 +48,14 @@ public class XmlRecordFactoryTest {
|
|||
|
||||
assertNotNull(doc);
|
||||
|
||||
System.out.println(doc.asXML());
|
||||
|
||||
Assertions.assertEquals("0000-0001-9613-6638", doc.valueOf("//creator[@rank = '1']/@orcid"));
|
||||
Assertions.assertEquals("0000-0001-9613-6639", doc.valueOf("//creator[@rank = '1']/@orcid_pending"));
|
||||
|
||||
Assertions.assertEquals("0000-0001-9613-9956", doc.valueOf("//creator[@rank = '2']/@orcid"));
|
||||
Assertions.assertEquals("", doc.valueOf("//creator[@rank = '2']/@orcid_pending"));
|
||||
|
||||
// TODO add assertions based of values extracted from the XML record
|
||||
}
|
||||
}
|
||||
|
|
|
@ -0,0 +1,820 @@
|
|||
{
|
||||
"author": [
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Lee, Jaehyun",
|
||||
"name": "Jaehyun",
|
||||
"pid": [
|
||||
{
|
||||
"qualifier": {
|
||||
"classid": "orcid",
|
||||
"classname": "Open Researcher and Contributor ID",
|
||||
"schemeid": "dnet:pid_types",
|
||||
"schemename": "dnet:pid_types"
|
||||
},
|
||||
"value": "0000-0001-9613-6638"
|
||||
},
|
||||
{
|
||||
"qualifier": {
|
||||
"classid": "orcid_pending",
|
||||
"classname": "Open Researcher and Contributor ID",
|
||||
"schemeid": "dnet:pid_types",
|
||||
"schemename": "dnet:pid_types"
|
||||
},
|
||||
"value": "0000-0001-9613-6639"
|
||||
}
|
||||
],
|
||||
"rank": 1,
|
||||
"surname": "Lee"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Berrada, Salim",
|
||||
"name": "Salim",
|
||||
"pid": [
|
||||
{
|
||||
"qualifier": {
|
||||
"classid": "orcid",
|
||||
"classname": "Open Researcher and Contributor ID",
|
||||
"schemeid": "dnet:pid_types",
|
||||
"schemename": "dnet:pid_types"
|
||||
},
|
||||
"value": "0000-0001-9613-9956"
|
||||
},
|
||||
{
|
||||
"qualifier": {
|
||||
"classid": "orcid_pending",
|
||||
"classname": "Open Researcher and Contributor ID",
|
||||
"schemeid": "dnet:pid_types",
|
||||
"schemename": "dnet:pid_types"
|
||||
},
|
||||
"value": "0000-0001-9613-9956"
|
||||
}
|
||||
],
|
||||
"rank": 2,
|
||||
"surname": "Berrada"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Adamu-Lema, Fikru",
|
||||
"name": "Fikru",
|
||||
"pid": [],
|
||||
"rank": 3,
|
||||
"surname": "Adamu-Lema"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Nagy, Nicole",
|
||||
"name": "Nicole",
|
||||
"pid": [],
|
||||
"rank": 4,
|
||||
"surname": "Nagy"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Georgiev, Vihar P.",
|
||||
"name": "Vihar P.",
|
||||
"pid": [],
|
||||
"rank": 5,
|
||||
"surname": "Georgiev"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Sadi, Toufik",
|
||||
"name": "Toufik",
|
||||
"pid": [],
|
||||
"rank": 6,
|
||||
"surname": "Sadi"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Liang, Jie",
|
||||
"name": "Jie",
|
||||
"pid": [],
|
||||
"rank": 7,
|
||||
"surname": "Liang"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Ramos, Raphael",
|
||||
"name": "Raphael",
|
||||
"pid": [],
|
||||
"rank": 8,
|
||||
"surname": "Ramos"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Carrillo-Nunez, Hamilton",
|
||||
"name": "Hamilton",
|
||||
"pid": [],
|
||||
"rank": 9,
|
||||
"surname": "Carrillo-Nunez"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Kalita, Dipankar",
|
||||
"name": "Dipankar",
|
||||
"pid": [],
|
||||
"rank": 10,
|
||||
"surname": "Kalita"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Lilienthal, Katharina",
|
||||
"name": "Katharina",
|
||||
"pid": [],
|
||||
"rank": 11,
|
||||
"surname": "Lilienthal"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Wislicenus, Marcus",
|
||||
"name": "Marcus",
|
||||
"pid": [],
|
||||
"rank": 12,
|
||||
"surname": "Wislicenus"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Pandey, Reeturaj",
|
||||
"name": "Reeturaj",
|
||||
"pid": [],
|
||||
"rank": 13,
|
||||
"surname": "Pandey"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Chen, Bingan",
|
||||
"name": "Bingan",
|
||||
"pid": [],
|
||||
"rank": 14,
|
||||
"surname": "Chen"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Teo, Kenneth B.K.",
|
||||
"name": "Kenneth B. K.",
|
||||
"pid": [],
|
||||
"rank": 15,
|
||||
"surname": "Teo"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Goncalves, Goncalo",
|
||||
"name": "Goncalo",
|
||||
"pid": [],
|
||||
"rank": 16,
|
||||
"surname": "Goncalves"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Okuno, Hanako",
|
||||
"name": "Hanako",
|
||||
"pid": [],
|
||||
"rank": 17,
|
||||
"surname": "Okuno"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Uhlig, Benjamin",
|
||||
"name": "Benjamin",
|
||||
"pid": [],
|
||||
"rank": 18,
|
||||
"surname": "Uhlig"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Todri-Sanial, Aida",
|
||||
"name": "Aida",
|
||||
"pid": [],
|
||||
"rank": 19,
|
||||
"surname": "Todri-Sanial"
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Dijon",
|
||||
"name": "",
|
||||
"pid": [],
|
||||
"rank": 20,
|
||||
"surname": ""
|
||||
},
|
||||
{
|
||||
"affiliation": [],
|
||||
"fullname": "Jean",
|
||||
"name": "",
|
||||
"pid": [],
|
||||
"rank": 21,
|
||||
"surname": ""
|
||||
}
|
||||
],
|
||||
"collectedfrom": [
|
||||
{
|
||||
"dataInfo": {
|
||||
"deletedbyinference": false,
|
||||
"inferenceprovenance": "",
|
||||
"inferred": false,
|
||||
"invisible": false,
|
||||
"provenanceaction": {
|
||||
"classid": "",
|
||||
"classname": "",
|
||||
"schemeid": "",
|
||||
"schemename": ""
|
||||
},
|
||||
"trust": ""
|
||||
},
|
||||
"key": "10|CSC_________::a2b9ce8435390bcbfc05f3cae3948747",
|
||||
"value": "VIRTA"
|
||||
}
|
||||
],
|
||||
"context": [],
|
||||
"contributor": [],
|
||||
"country": [],
|
||||
"coverage": [],
|
||||
"dataInfo": {
|
||||
"deletedbyinference": false,
|
||||
"inferenceprovenance": "",
|
||||
"inferred": false,
|
||||
"invisible": false,
|
||||
"provenanceaction": {
|
||||
"classid": "sysimport:crosswalk:datasetarchive",
|
||||
"classname": "sysimport:crosswalk:datasetarchive",
|
||||
"schemeid": "dnet:provenanceActions",
|
||||
"schemename": "dnet:provenanceActions"
|
||||
},
|
||||
"trust": "0.9"
|
||||
},
|
||||
"dateofacceptance": {
|
||||
"dataInfo": {
|
||||
"deletedbyinference": false,
|
||||
"inferenceprovenance": "",
|
||||
"inferred": false,
|
||||
"invisible": false,
|
||||
"provenanceaction": {
|
||||
"classid": "",
|
||||
"classname": "",
|
||||
"schemeid": "",
|
||||
"schemename": ""
|
||||
},
|
||||
"trust": ""
|
||||
},
|
||||
"value": "2018-01-01"
|
||||
},
|
||||
"dateofcollection": "2020-01-27T11:32:33.729Z",
|
||||
"dateoftransformation": "2020-01-27T12:03:59.662Z",
|
||||
"description": [],
|
||||
"embargoenddate": {
|
||||
"dataInfo": {
|
||||
"deletedbyinference": false,
|
||||
"inferenceprovenance": "",
|
||||
"inferred": false,
|
||||
"invisible": false,
|
||||
"provenanceaction": {
|
||||
"classid": "",
|
||||
"classname": "",
|
||||
"schemeid": "",
|
||||
"schemename": ""
|
||||
},
|
||||
"trust": ""
|
||||
},
|
||||
"value": ""
|
||||
},
|
||||
"extraInfo": [],
|
||||
"format": [],
|
||||
"fulltext": [],
|
||||
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Loading…
Reference in New Issue