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2487 Commits

Author SHA1 Message Date
Claudio Atzori fa7930d2e2 merging contributions from PR#97 2021-03-05 15:45:28 +01:00
Claudio Atzori 55f6ff5f55 README.md for aggregation workflows 2021-03-03 16:18:34 +01:00
Claudio Atzori e8789b0cdb Merge pull request 'stats DB for monitor' (#99) from antonis.lempesis/dnet-hadoop:master into master 
Looks good to me, just a note on the parsing of the citations: since the last version, IIS produces citations as proper relationships among results. This is what we got already in the BETA graph

```
count		r.reltype	r.subreltype	r.relclass
62.129.254	resultResult	citation	cites
62.043.309	resultResult	citation	isCitedBy
```

Thus, I suggest to move away from the current property based implementation for the extraction of the citation links and start relying on the relationships instead.
 2021-03-03 10:29:09 +01:00
Claudio Atzori ec80b7ade3 code formatting 2021-03-03 10:22:53 +01:00
Claudio Atzori 36f750cd1d removed unused classes 2021-03-03 10:22:29 +01:00
Claudio Atzori b73dce3e3a more logging on the MDStore mongodb client. Forcing UTF_8 encoding on the content 2021-03-03 10:17:16 +01:00
Antonis Lempesis 27796343ca crude sleep. hardcoded value 2021-03-03 01:37:47 +02:00
Claudio Atzori e76c4f62c1 MetadataRecord moved in dhp-schemas 2021-02-26 10:58:48 +01:00
miconis 1a85020572 bug fix in graph-mapper, changes in the implementation of the openorgs wf to create relations and populate openorgs db 2021-02-26 10:19:28 +01:00
Claudio Atzori 7df2461ccc indent XML records collected from oai-pmh endpoints 2021-02-25 16:19:12 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori dc98c39500 more logging 2021-02-25 12:29:18 +01:00
Claudio Atzori 271e88537b code formatting 2021-02-25 12:28:56 +01:00
Claudio Atzori 9c899f4433 cleanup on transformation functions and the relative tests 2021-02-24 15:07:59 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
Antonis Lempesis d90767c733 correctly invalidating metadata 2021-02-19 03:18:47 +02:00
Antonis Lempesis 3681afbe04 typo 2021-02-19 03:04:27 +02:00
Antonis Lempesis c5502eba8f actually moved stats computation in impala instead of hive... 2021-02-19 02:54:39 +02:00
Antonis Lempesis 33c85d4e66 moved stats computation in impala instead of hive 2021-02-18 17:23:34 +02:00
Antonis Lempesis b8e96c8ae7 moved cache update to the end 2021-02-18 16:42:22 +02:00
Antonis Lempesis bcbfc052b1 fixed last errors in step 21 2021-02-18 16:32:54 +02:00
Antonis Lempesis 10a29a4b9a fixes in monitor step 2021-02-18 15:05:59 +02:00
Antonis Lempesis 8ef66452d5 fixed typo 2021-02-17 22:24:44 +02:00
Antonis Lempesis a8836e2f5f fixed typo 2021-02-17 19:27:07 +02:00
Claudio Atzori e7eba9f7e7 WIP: transformation workflow error reporting; cleanup 2021-02-17 16:54:08 +01:00
Claudio Atzori 58467aaf1e WIP: transformation workflow error reporting 2021-02-17 16:14:41 +01:00
Claudio Atzori cc88701f29 retry for any Socket exception 2021-02-17 16:13:54 +01:00
Antonis Lempesis a445c1ac3d fixed variable names in monitor script 2021-02-17 16:45:09 +02:00
Antonis Lempesis 00d516360f added missing ; 2021-02-17 16:41:10 +02:00
Claudio Atzori 545f8f3e48 using jackson objectmapper instead of GSon to serialise the aggregation report 2021-02-17 12:15:00 +01:00
Claudio Atzori b592d78bb4 WIP: collectorWorker error reporting, generalised reported implementation 2021-02-17 10:28:01 +01:00
Antonis Lempesis cd1b794409 added the monitor db wf 2021-02-17 02:11:55 +02:00
Claudio Atzori cf27905a71 WIP: collectorWorker error reporting, added report messages 2021-02-16 16:53:14 +01:00
Alessia Bardi bf2830b981 Merge pull request 'manage merging of Relatation validation attributes' (#95) from merge_rel_validation into master 2021-02-16 12:14:27 +01:00
Claudio Atzori 6f9864c564 manage merging of Relatation validation attributes 2021-02-16 11:53:44 +01:00
Alessia Bardi 32e81c2d89 non validated rel has null value in validated field 2021-02-16 11:01:42 +01:00
Claudio Atzori 58288a95b8 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:28:53 +01:00
Claudio Atzori 1abe6d1ad7 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:08:59 +01:00
Claudio Atzori 523a6bfa97 Merge pull request 'first commit to the correct branch' (#94) from andreas.czerniak/BrAggr_dnet-hadoop:hadoop_aggregator into hadoop_aggregator 
Looks good to me, thanks Andreas!
 2021-02-15 12:15:31 +01:00
Antonis Lempesis 1c029b9fc0 fixed formatting 2021-02-14 03:14:24 +02:00
Antonis Lempesis 2c4dcc90ba analyzing tables to produce stats 2021-02-14 02:54:55 +02:00
Sandro La Bruzzo 7edcc87ed4 changed xslt behaviour on failure 2021-02-12 17:27:08 +01:00
Sandro La Bruzzo 6a37c7f175 merge fixed 2021-02-12 16:38:47 +01:00
Sandro La Bruzzo b3f5c2351d Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into hadoop_aggregator 
 Conflicts:
	dhp-workflows/dhp-aggregation/src/test/java/eu/dnetlib/dhp/transformation/TransformationJobTest.java
 2021-02-12 16:37:14 +01:00
Sandro La Bruzzo f216277219 Implemented cleaning date 2021-02-12 16:34:52 +01:00
Andreas Czerniak 5a9017cf18 clone, min. changes, test, run 2021-02-12 14:32:36 +01:00
Claudio Atzori aa55dedb8a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-12 12:31:05 +01:00
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Sandro La Bruzzo 17e6f1934e fixed NPE on cleaner 2021-02-12 11:48:11 +01:00
Sandro La Bruzzo ebcc3ec14f updated wrong datacite identifier in trasformation 2021-02-11 16:25:51 +01:00