forked from antonis.lempesis/dnet-hadoop
fixed collectedFrom ID
This commit is contained in:
parent
25307965d2
commit
8ff7facfa3
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@ -80,11 +80,11 @@ public abstract class AbstractMdRecordToOafMapper {
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final String type = doc.valueOf("//dr:CobjCategory/@type");
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final String type = doc.valueOf("//dr:CobjCategory/@type");
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final KeyValue collectedFrom =
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final KeyValue collectedFrom =
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keyValue(doc.valueOf("//oaf:collectedFrom/@id"), doc.valueOf("//oaf:collectedFrom/@name"));
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keyValue(createOpenaireId(10, doc.valueOf("//oaf:collectedFrom/@id"), true), doc.valueOf("//oaf:collectedFrom/@name"));
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final KeyValue hostedBy =
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final KeyValue hostedBy =
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StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id"))
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StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id"))
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? collectedFrom
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? collectedFrom
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: keyValue(doc.valueOf("//oaf:hostedBy/@id"), doc.valueOf("//oaf:hostedBy/@name"));
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: keyValue(createOpenaireId(10, doc.valueOf("//oaf:hostedBy/@id"), true), doc.valueOf("//oaf:hostedBy/@name"));
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final DataInfo info = prepareDataInfo(doc);
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final DataInfo info = prepareDataInfo(doc);
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final long lastUpdateTimestamp = new Date().getTime();
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final long lastUpdateTimestamp = new Date().getTime();
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@ -1,11 +1,15 @@
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package eu.dnetlib.dhp.oa.graph.raw;
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package eu.dnetlib.dhp.oa.graph.raw;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.*;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.asString;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.createOpenaireId;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.dataInfo;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.field;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.journal;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listFields;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listKeyValues;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
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import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
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import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
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import eu.dnetlib.dhp.schema.oaf.*;
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import java.io.Closeable;
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import java.io.Closeable;
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import java.io.IOException;
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import java.io.IOException;
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import java.sql.Array;
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import java.sql.Array;
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@ -17,20 +21,38 @@ import java.util.Date;
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import java.util.List;
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import java.util.List;
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import java.util.function.Consumer;
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import java.util.function.Consumer;
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import java.util.function.Function;
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import java.util.function.Function;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.commons.logging.LogFactory;
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import eu.dnetlib.dhp.application.ArgumentApplicationParser;
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import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
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import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
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import eu.dnetlib.dhp.schema.oaf.Context;
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import eu.dnetlib.dhp.schema.oaf.DataInfo;
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import eu.dnetlib.dhp.schema.oaf.Dataset;
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import eu.dnetlib.dhp.schema.oaf.Datasource;
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import eu.dnetlib.dhp.schema.oaf.Field;
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import eu.dnetlib.dhp.schema.oaf.Journal;
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import eu.dnetlib.dhp.schema.oaf.KeyValue;
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import eu.dnetlib.dhp.schema.oaf.Oaf;
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import eu.dnetlib.dhp.schema.oaf.Organization;
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import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
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import eu.dnetlib.dhp.schema.oaf.Project;
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import eu.dnetlib.dhp.schema.oaf.Publication;
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import eu.dnetlib.dhp.schema.oaf.Qualifier;
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import eu.dnetlib.dhp.schema.oaf.Relation;
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import eu.dnetlib.dhp.schema.oaf.Result;
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import eu.dnetlib.dhp.schema.oaf.Software;
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import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
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public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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implements Closeable {
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implements Closeable {
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private static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION =
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private static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION =
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qualifier(
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qualifier("sysimport:crosswalk:entityregistry", "sysimport:crosswalk:entityregistry", "dnet:provenance_actions", "dnet:provenance_actions");
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"sysimport:crosswalk:entityregistry",
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"sysimport:crosswalk:entityregistry",
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"dnet:provenance_actions",
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"dnet:provenance_actions");
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private static final Log log = LogFactory.getLog(MigrateDbEntitiesApplication.class);
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private static final Log log = LogFactory.getLog(MigrateDbEntitiesApplication.class);
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@ -41,9 +63,8 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public static void main(final String[] args) throws Exception {
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public static void main(final String[] args) throws Exception {
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final ArgumentApplicationParser parser =
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final ArgumentApplicationParser parser =
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new ArgumentApplicationParser(
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new ArgumentApplicationParser(
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IOUtils.toString(
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IOUtils.toString(MigrateDbEntitiesApplication.class
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MigrateDbEntitiesApplication.class.getResourceAsStream(
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.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
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"/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
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parser.parseArgument(args);
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parser.parseArgument(args);
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@ -72,8 +93,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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smdbe.execute("queryOrganizations.sql", smdbe::processOrganization);
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smdbe.execute("queryOrganizations.sql", smdbe::processOrganization);
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log.info("Processing relations ds <-> orgs ...");
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log.info("Processing relations ds <-> orgs ...");
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smdbe.execute(
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smdbe.execute("queryDatasourceOrganization.sql", smdbe::processDatasourceOrganization);
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"queryDatasourceOrganization.sql", smdbe::processDatasourceOrganization);
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log.info("Processing projects <-> orgs ...");
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log.info("Processing projects <-> orgs ...");
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smdbe.execute("queryProjectOrganization.sql", smdbe::processProjectOrganization);
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smdbe.execute("queryProjectOrganization.sql", smdbe::processProjectOrganization);
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@ -99,8 +119,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer)
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public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer)
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throws Exception {
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throws Exception {
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final String sql =
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final String sql =
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IOUtils.toString(
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IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
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getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
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final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));
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final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));
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@ -117,17 +136,14 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
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ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
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ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
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ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
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ds.setCollectedfrom(
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ds.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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listKeyValues(
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rs.getString("collectedfromid"), rs.getString("collectedfromname")));
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ds.setPid(new ArrayList<>());
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ds.setPid(new ArrayList<>());
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ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
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ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
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ds.setDateoftransformation(null); // Value not returned by the SQL query
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ds.setDateoftransformation(null); // Value not returned by the SQL query
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ds.setExtraInfo(new ArrayList<>()); // Values not present in the DB
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ds.setExtraInfo(new ArrayList<>()); // Values not present in the DB
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ds.setOaiprovenance(null); // Values not present in the DB
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ds.setOaiprovenance(null); // Values not present in the DB
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ds.setDatasourcetype(prepareQualifierSplitting(rs.getString("datasourcetype")));
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ds.setDatasourcetype(prepareQualifierSplitting(rs.getString("datasourcetype")));
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ds.setOpenairecompatibility(
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ds.setOpenairecompatibility(prepareQualifierSplitting(rs.getString("openairecompatibility")));
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prepareQualifierSplitting(rs.getString("openairecompatibility")));
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ds.setOfficialname(field(rs.getString("officialname"), info));
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ds.setOfficialname(field(rs.getString("officialname"), info));
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ds.setEnglishname(field(rs.getString("englishname"), info));
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ds.setEnglishname(field(rs.getString("englishname"), info));
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ds.setWebsiteurl(field(rs.getString("websiteurl"), info));
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ds.setWebsiteurl(field(rs.getString("websiteurl"), info));
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@ -160,11 +176,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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ds.setPidsystems(field(rs.getString("pidsystems"), info));
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ds.setPidsystems(field(rs.getString("pidsystems"), info));
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ds.setCertificates(field(rs.getString("certificates"), info));
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ds.setCertificates(field(rs.getString("certificates"), info));
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ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
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ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
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ds.setJournal(
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ds.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
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prepareJournal(
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rs.getString("officialname"),
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rs.getString("journal"),
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info)); // Journal
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ds.setDataInfo(info);
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ds.setDataInfo(info);
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ds.setLastupdatetimestamp(lastUpdateTimestamp);
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ds.setLastupdatetimestamp(lastUpdateTimestamp);
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@ -183,9 +195,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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p.setId(createOpenaireId(40, rs.getString("projectid"), true));
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p.setId(createOpenaireId(40, rs.getString("projectid"), true));
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p.setOriginalId(Arrays.asList(rs.getString("projectid")));
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p.setOriginalId(Arrays.asList(rs.getString("projectid")));
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p.setCollectedfrom(
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p.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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listKeyValues(
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rs.getString("collectedfromid"), rs.getString("collectedfromname")));
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p.setPid(new ArrayList<>());
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p.setPid(new ArrayList<>());
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p.setDateofcollection(asString(rs.getDate("dateofcollection")));
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p.setDateofcollection(asString(rs.getDate("dateofcollection")));
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p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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@ -201,8 +211,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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p.setKeywords(field(rs.getString("keywords"), info));
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p.setKeywords(field(rs.getString("keywords"), info));
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p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
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p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
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p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
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p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
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p.setOamandatepublications(
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p.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
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field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
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p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
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p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
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p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
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p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
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p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
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p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
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@ -238,9 +247,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
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o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
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o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
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o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
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o.setCollectedfrom(
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o.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
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listKeyValues(
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rs.getString("collectedfromid"), rs.getString("collectedfromname")));
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o.setPid(new ArrayList<>());
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o.setPid(new ArrayList<>());
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o.setDateofcollection(asString(rs.getDate("dateofcollection")));
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o.setDateofcollection(asString(rs.getDate("dateofcollection")));
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o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
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@ -254,17 +261,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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o.setEclegalbody(field(Boolean.toString(rs.getBoolean("eclegalbody")), info));
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o.setEclegalbody(field(Boolean.toString(rs.getBoolean("eclegalbody")), info));
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o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
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o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
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o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
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o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
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o.setEcresearchorganization(
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o.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
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field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
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o.setEchighereducation(field(Boolean.toString(rs.getBoolean("echighereducation")), info));
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o.setEchighereducation(
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o.setEcinternationalorganizationeurinterests(field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
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field(Boolean.toString(rs.getBoolean("echighereducation")), info));
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o.setEcinternationalorganization(field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
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o.setEcinternationalorganizationeurinterests(
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field(
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Boolean.toString(
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rs.getBoolean("ecinternationalorganizationeurinterests")),
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info));
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o.setEcinternationalorganization(
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field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
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o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
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o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
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o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
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o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
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o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
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o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
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@ -284,8 +284,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final String orgId = createOpenaireId(20, rs.getString("organization"), true);
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final String orgId = createOpenaireId(20, rs.getString("organization"), true);
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final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
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final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
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final List<KeyValue> collectedFrom =
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final List<KeyValue> collectedFrom =
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listKeyValues(
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listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
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rs.getString("collectedfromid"), rs.getString("collectedfromname"));
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final Relation r1 = new Relation();
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final Relation r1 = new Relation();
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r1.setRelType("datasourceOrganization");
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r1.setRelType("datasourceOrganization");
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@ -319,8 +318,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
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final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
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final String projectId = createOpenaireId(40, rs.getString("project"), true);
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final String projectId = createOpenaireId(40, rs.getString("project"), true);
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final List<KeyValue> collectedFrom =
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final List<KeyValue> collectedFrom =
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listKeyValues(
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listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
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rs.getString("collectedfromid"), rs.getString("collectedfromname"));
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final Relation r1 = new Relation();
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final Relation r1 = new Relation();
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r1.setRelType("projectOrganization");
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r1.setRelType("projectOrganization");
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@ -351,17 +349,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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public List<Oaf> processClaims(final ResultSet rs) {
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public List<Oaf> processClaims(final ResultSet rs) {
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final DataInfo info =
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final DataInfo info =
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dataInfo(
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dataInfo(false, null, false, false, qualifier("user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"), "0.9");
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false,
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null,
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final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
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false,
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false,
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qualifier(
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"user:claim",
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"user:claim",
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"dnet:provenanceActions",
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"dnet:provenanceActions"),
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"0.9");
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try {
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try {
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@ -381,32 +371,35 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
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r.setLastupdatetimestamp(lastUpdateTimestamp);
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r.setLastupdatetimestamp(lastUpdateTimestamp);
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r.setContext(prepareContext(rs.getString("source_id"), info));
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r.setContext(prepareContext(rs.getString("source_id"), info));
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r.setDataInfo(info);
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r.setDataInfo(info);
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r.setCollectedfrom(collectedFrom);
|
||||||
|
|
||||||
return Arrays.asList(r);
|
return Arrays.asList(r);
|
||||||
} else {
|
} else {
|
||||||
final String sourceId =
|
final String sourceId =
|
||||||
createOpenaireId(
|
createOpenaireId(rs.getString("source_type"), rs.getString("source_id"), false);
|
||||||
rs.getString("source_type"), rs.getString("source_id"), false);
|
|
||||||
final String targetId =
|
final String targetId =
|
||||||
createOpenaireId(
|
createOpenaireId(rs.getString("target_type"), rs.getString("target_id"), false);
|
||||||
rs.getString("target_type"), rs.getString("target_id"), false);
|
|
||||||
|
|
||||||
final Relation r1 = new Relation();
|
final Relation r1 = new Relation();
|
||||||
final Relation r2 = new Relation();
|
final Relation r2 = new Relation();
|
||||||
|
|
||||||
if (rs.getString("source_type").equals("project")) {
|
if (rs.getString("source_type").equals("project")) {
|
||||||
|
r1.setCollectedFrom(collectedFrom);
|
||||||
r1.setRelType("resultProject");
|
r1.setRelType("resultProject");
|
||||||
r1.setSubRelType("outcome");
|
r1.setSubRelType("outcome");
|
||||||
r1.setRelClass("produces");
|
r1.setRelClass("produces");
|
||||||
|
|
||||||
|
r2.setCollectedFrom(collectedFrom);
|
||||||
r2.setRelType("resultProject");
|
r2.setRelType("resultProject");
|
||||||
r2.setSubRelType("outcome");
|
r2.setSubRelType("outcome");
|
||||||
r2.setRelClass("isProducedBy");
|
r2.setRelClass("isProducedBy");
|
||||||
} else {
|
} else {
|
||||||
|
r1.setCollectedFrom(collectedFrom);
|
||||||
r1.setRelType("resultResult");
|
r1.setRelType("resultResult");
|
||||||
r1.setSubRelType("relationship");
|
r1.setSubRelType("relationship");
|
||||||
r1.setRelClass("isRelatedTo");
|
r1.setRelClass("isRelatedTo");
|
||||||
|
|
||||||
|
r2.setCollectedFrom(collectedFrom);
|
||||||
r2.setRelType("resultResult");
|
r2.setRelType("resultResult");
|
||||||
r2.setSubRelType("relationship");
|
r2.setSubRelType("relationship");
|
||||||
r2.setRelClass("isRelatedTo");
|
r2.setRelClass("isRelatedTo");
|
||||||
|
@ -442,19 +435,11 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
||||||
final String inferenceprovenance = rs.getString("inferenceprovenance");
|
final String inferenceprovenance = rs.getString("inferenceprovenance");
|
||||||
final Boolean inferred = rs.getBoolean("inferred");
|
final Boolean inferred = rs.getBoolean("inferred");
|
||||||
final String trust = rs.getString("trust");
|
final String trust = rs.getString("trust");
|
||||||
return dataInfo(
|
return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, ENTITYREGISTRY_PROVENANCE_ACTION, trust);
|
||||||
deletedbyinference,
|
|
||||||
inferenceprovenance,
|
|
||||||
inferred,
|
|
||||||
false,
|
|
||||||
ENTITYREGISTRY_PROVENANCE_ACTION,
|
|
||||||
trust);
|
|
||||||
}
|
}
|
||||||
|
|
||||||
private Qualifier prepareQualifierSplitting(final String s) {
|
private Qualifier prepareQualifierSplitting(final String s) {
|
||||||
if (StringUtils.isBlank(s)) {
|
if (StringUtils.isBlank(s)) { return null; }
|
||||||
return null;
|
|
||||||
}
|
|
||||||
final String[] arr = s.split("@@@");
|
final String[] arr = s.split("@@@");
|
||||||
return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
|
return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
|
||||||
}
|
}
|
||||||
|
@ -470,22 +455,19 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
||||||
}
|
}
|
||||||
|
|
||||||
private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
|
private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
|
||||||
if (StringUtils.isBlank(s)) {
|
if (StringUtils.isBlank(s)) { return null; }
|
||||||
return null;
|
|
||||||
}
|
|
||||||
final String[] parts = s.split("###");
|
final String[] parts = s.split("###");
|
||||||
if (parts.length == 2) {
|
if (parts.length == 2) {
|
||||||
final String value = parts[0];
|
final String value = parts[0];
|
||||||
final String[] arr = parts[1].split("@@@");
|
final String[] arr = parts[1].split("@@@");
|
||||||
if (arr.length == 4) {
|
if (arr.length == 4) { return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo); }
|
||||||
return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo);
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
return null;
|
return null;
|
||||||
}
|
}
|
||||||
|
|
||||||
private List<StructuredProperty> prepareListOfStructProps(
|
private List<StructuredProperty> prepareListOfStructProps(
|
||||||
final Array array, final DataInfo dataInfo) throws SQLException {
|
final Array array,
|
||||||
|
final DataInfo dataInfo) throws SQLException {
|
||||||
final List<StructuredProperty> res = new ArrayList<>();
|
final List<StructuredProperty> res = new ArrayList<>();
|
||||||
if (array != null) {
|
if (array != null) {
|
||||||
for (final String s : (String[]) array.getArray()) {
|
for (final String s : (String[]) array.getArray()) {
|
||||||
|
@ -504,14 +486,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
||||||
final String[] arr = sj.split("@@@");
|
final String[] arr = sj.split("@@@");
|
||||||
if (arr.length == 3) {
|
if (arr.length == 3) {
|
||||||
final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0] : null;
|
final String issn = StringUtils.isNotBlank(arr[0]) ? arr[0] : null;
|
||||||
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;
|
final String eissn = StringUtils.isNotBlank(arr[1]) ? arr[1] : null;;
|
||||||
;
|
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;;
|
||||||
final String lissn = StringUtils.isNotBlank(arr[2]) ? arr[2] : null;
|
|
||||||
;
|
|
||||||
if (issn != null || eissn != null || lissn != null) {
|
if (issn != null || eissn != null || lissn != null) {
|
||||||
return journal(
|
return journal(name, issn, eissn, eissn, null, null, null, null, null, null, null, info);
|
||||||
name, issn, eissn, eissn, null, null, null, null, null, null, null,
|
|
||||||
info);
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -51,6 +51,7 @@ public class MappersTest {
|
||||||
final Relation r2 = (Relation) list.get(2);
|
final Relation r2 = (Relation) list.get(2);
|
||||||
|
|
||||||
assertValidId(p.getId());
|
assertValidId(p.getId());
|
||||||
|
assertValidId(p.getCollectedfrom().get(0).getKey());
|
||||||
assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
|
assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
|
||||||
assertTrue(p.getAuthor().size() > 0);
|
assertTrue(p.getAuthor().size() > 0);
|
||||||
assertTrue(p.getSubject().size() > 0);
|
assertTrue(p.getSubject().size() > 0);
|
||||||
|
@ -61,6 +62,8 @@ public class MappersTest {
|
||||||
assertValidId(r1.getTarget());
|
assertValidId(r1.getTarget());
|
||||||
assertValidId(r2.getSource());
|
assertValidId(r2.getSource());
|
||||||
assertValidId(r2.getTarget());
|
assertValidId(r2.getTarget());
|
||||||
|
assertValidId(r1.getCollectedFrom().get(0).getKey());
|
||||||
|
assertValidId(r2.getCollectedFrom().get(0).getKey());
|
||||||
assertNotNull(r1.getDataInfo());
|
assertNotNull(r1.getDataInfo());
|
||||||
assertNotNull(r2.getDataInfo());
|
assertNotNull(r2.getDataInfo());
|
||||||
assertNotNull(r1.getDataInfo().getTrust());
|
assertNotNull(r1.getDataInfo().getTrust());
|
||||||
|
@ -92,6 +95,7 @@ public class MappersTest {
|
||||||
final Relation r2 = (Relation) list.get(2);
|
final Relation r2 = (Relation) list.get(2);
|
||||||
|
|
||||||
assertValidId(d.getId());
|
assertValidId(d.getId());
|
||||||
|
assertValidId(d.getCollectedfrom().get(0).getKey());
|
||||||
assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue()));
|
assertTrue(StringUtils.isNotBlank(d.getTitle().get(0).getValue()));
|
||||||
assertTrue(d.getAuthor().size() > 0);
|
assertTrue(d.getAuthor().size() > 0);
|
||||||
assertTrue(d.getSubject().size() > 0);
|
assertTrue(d.getSubject().size() > 0);
|
||||||
|
@ -124,6 +128,7 @@ public class MappersTest {
|
||||||
final Software s = (Software) list.get(0);
|
final Software s = (Software) list.get(0);
|
||||||
|
|
||||||
assertValidId(s.getId());
|
assertValidId(s.getId());
|
||||||
|
assertValidId(s.getCollectedfrom().get(0).getKey());
|
||||||
assertTrue(StringUtils.isNotBlank(s.getTitle().get(0).getValue()));
|
assertTrue(StringUtils.isNotBlank(s.getTitle().get(0).getValue()));
|
||||||
assertTrue(s.getAuthor().size() > 0);
|
assertTrue(s.getAuthor().size() > 0);
|
||||||
assertTrue(s.getSubject().size() > 0);
|
assertTrue(s.getSubject().size() > 0);
|
||||||
|
|
|
@ -29,6 +29,7 @@ import eu.dnetlib.dhp.schema.oaf.Oaf;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Organization;
|
import eu.dnetlib.dhp.schema.oaf.Organization;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Project;
|
import eu.dnetlib.dhp.schema.oaf.Project;
|
||||||
import eu.dnetlib.dhp.schema.oaf.Relation;
|
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||||
|
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||||
|
|
||||||
@ExtendWith(MockitoExtension.class)
|
@ExtendWith(MockitoExtension.class)
|
||||||
public class MigrateDbEntitiesApplicationTest {
|
public class MigrateDbEntitiesApplicationTest {
|
||||||
|
@ -53,12 +54,12 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
|
|
||||||
final Datasource ds = (Datasource) list.get(0);
|
final Datasource ds = (Datasource) list.get(0);
|
||||||
assertValidId(ds.getId());
|
assertValidId(ds.getId());
|
||||||
|
assertValidId(ds.getCollectedfrom().get(0).getKey());
|
||||||
assertEquals(ds.getOfficialname().getValue(), getValueAsString("officialname", fields));
|
assertEquals(ds.getOfficialname().getValue(), getValueAsString("officialname", fields));
|
||||||
assertEquals(ds.getEnglishname().getValue(), getValueAsString("englishname", fields));
|
assertEquals(ds.getEnglishname().getValue(), getValueAsString("englishname", fields));
|
||||||
assertEquals(ds.getContactemail().getValue(), getValueAsString("contactemail", fields));
|
assertEquals(ds.getContactemail().getValue(), getValueAsString("contactemail", fields));
|
||||||
assertEquals(ds.getWebsiteurl().getValue(), getValueAsString("websiteurl", fields));
|
assertEquals(ds.getWebsiteurl().getValue(), getValueAsString("websiteurl", fields));
|
||||||
assertEquals(ds.getNamespaceprefix().getValue(), getValueAsString("namespaceprefix", fields));
|
assertEquals(ds.getNamespaceprefix().getValue(), getValueAsString("namespaceprefix", fields));
|
||||||
assertEquals(ds.getCollectedfrom().get(0).getKey(), getValueAsString("collectedfromid", fields));
|
|
||||||
assertEquals(ds.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
assertEquals(ds.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -72,10 +73,11 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
|
|
||||||
final Project p = (Project) list.get(0);
|
final Project p = (Project) list.get(0);
|
||||||
assertValidId(p.getId());
|
assertValidId(p.getId());
|
||||||
|
assertValidId(p.getCollectedfrom().get(0).getKey());
|
||||||
assertEquals(p.getAcronym().getValue(), getValueAsString("acronym", fields));
|
assertEquals(p.getAcronym().getValue(), getValueAsString("acronym", fields));
|
||||||
assertEquals(p.getTitle().getValue(), getValueAsString("title", fields));
|
assertEquals(p.getTitle().getValue(), getValueAsString("title", fields));
|
||||||
assertEquals(p.getCollectedfrom().get(0).getKey(), getValueAsString("collectedfromid", fields));
|
|
||||||
assertEquals(p.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
assertEquals(p.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
@ -90,6 +92,7 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
|
|
||||||
final Organization o = (Organization) list.get(0);
|
final Organization o = (Organization) list.get(0);
|
||||||
assertValidId(o.getId());
|
assertValidId(o.getId());
|
||||||
|
assertValidId(o.getCollectedfrom().get(0).getKey());
|
||||||
assertEquals(o.getLegalshortname().getValue(), getValueAsString("legalshortname", fields));
|
assertEquals(o.getLegalshortname().getValue(), getValueAsString("legalshortname", fields));
|
||||||
assertEquals(o.getLegalname().getValue(), getValueAsString("legalname", fields));
|
assertEquals(o.getLegalname().getValue(), getValueAsString("legalname", fields));
|
||||||
assertEquals(o.getWebsiteurl().getValue(), getValueAsString("websiteurl", fields));
|
assertEquals(o.getWebsiteurl().getValue(), getValueAsString("websiteurl", fields));
|
||||||
|
@ -97,7 +100,6 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
assertEquals(o.getCountry().getClassname(), getValueAsString("country", fields).split("@@@")[1]);
|
assertEquals(o.getCountry().getClassname(), getValueAsString("country", fields).split("@@@")[1]);
|
||||||
assertEquals(o.getCountry().getSchemeid(), getValueAsString("country", fields).split("@@@")[2]);
|
assertEquals(o.getCountry().getSchemeid(), getValueAsString("country", fields).split("@@@")[2]);
|
||||||
assertEquals(o.getCountry().getSchemename(), getValueAsString("country", fields).split("@@@")[3]);
|
assertEquals(o.getCountry().getSchemename(), getValueAsString("country", fields).split("@@@")[3]);
|
||||||
assertEquals(o.getCollectedfrom().get(0).getKey(), getValueAsString("collectedfromid", fields));
|
|
||||||
assertEquals(o.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
assertEquals(o.getCollectedfrom().get(0).getValue(), getValueAsString("collectedfromname", fields));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -133,6 +135,8 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
assertValidId(r2.getSource());
|
assertValidId(r2.getSource());
|
||||||
assertEquals(r1.getSource(), r2.getTarget());
|
assertEquals(r1.getSource(), r2.getTarget());
|
||||||
assertEquals(r2.getSource(), r1.getTarget());
|
assertEquals(r2.getSource(), r1.getTarget());
|
||||||
|
assertValidId(r1.getCollectedFrom().get(0).getKey());
|
||||||
|
assertValidId(r2.getCollectedFrom().get(0).getKey());
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
@ -142,8 +146,12 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
final List<Oaf> list = app.processClaims(rs);
|
final List<Oaf> list = app.processClaims(rs);
|
||||||
|
|
||||||
assertEquals(1, list.size());
|
assertEquals(1, list.size());
|
||||||
|
assertTrue(list.get(0) instanceof Result);
|
||||||
|
final Result r = (Result) list.get(0);
|
||||||
|
|
||||||
verifyMocks(fields);
|
verifyMocks(fields);
|
||||||
|
|
||||||
|
assertValidId(r.getCollectedfrom().get(0).getKey());
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
@ -176,6 +184,9 @@ public class MigrateDbEntitiesApplicationTest {
|
||||||
assertTrue(StringUtils.isNotBlank(r1.getRelType()));
|
assertTrue(StringUtils.isNotBlank(r1.getRelType()));
|
||||||
assertTrue(StringUtils.isNotBlank(r2.getRelType()));
|
assertTrue(StringUtils.isNotBlank(r2.getRelType()));
|
||||||
|
|
||||||
|
assertValidId(r1.getCollectedFrom().get(0).getKey());
|
||||||
|
assertValidId(r2.getCollectedFrom().get(0).getKey());
|
||||||
|
|
||||||
// System.out.println(new ObjectMapper().writeValueAsString(r1));
|
// System.out.println(new ObjectMapper().writeValueAsString(r1));
|
||||||
// System.out.println(new ObjectMapper().writeValueAsString(r2));
|
// System.out.println(new ObjectMapper().writeValueAsString(r2));
|
||||||
}
|
}
|
||||||
|
|
Loading…
Reference in New Issue