forked from antonis.lempesis/dnet-hadoop
Merge pull request 'Adding the stats workflow to the dnet-hadoop hierarchy' (#6) from spyros/dnet-hadoop:master into master
Integrating stats update workflow.
This commit is contained in:
commit
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<?xml version="1.0" encoding="UTF-8"?>
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<parent>
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<artifactId>dhp-workflows</artifactId>
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<groupId>eu.dnetlib.dhp</groupId>
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<version>1.1.6-SNAPSHOT</version>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<artifactId>dhp-statistics-workflow</artifactId>
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<dependencies>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-core_2.11</artifactId>
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</dependency>
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<dependency>
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<groupId>org.apache.spark</groupId>
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<artifactId>spark-sql_2.11</artifactId>
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</dependency>
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</dependencies>
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<build>
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<plugins>
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<plugin>
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<groupId>pl.project13.maven</groupId>
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<artifactId>git-commit-id-plugin</artifactId>
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<configuration>
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<failOnNoGitDirectory>false</failOnNoGitDirectory>
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</configuration>
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</plugin>
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</plugins>
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</build>
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</project>
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<configuration>
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<property>
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<name>jobTracker</name>
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<value>${jobTracker}</value>
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</property>
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<property>
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<name>nameNode</name>
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<value>${nameNode}</value>
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</property>
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<property>
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<name>oozie.use.system.libpath</name>
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<value>true</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>spark2</value>
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</property>
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<property>
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<name>hive_metastore_uris</name>
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<value>thrift://iis-cdh5-test-m3.ocean.icm.edu.pl:9083</value>
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</property>
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<property>
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<name>hive_jdbc_url</name>
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<value>jdbc:hive2://iis-cdh5-test-m3.ocean.icm.edu.pl:10000</value>
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</property>
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<property>
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<name>oozie.wf.workflow.notification.url</name>
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<value>{serviceUrl}/v1/oozieNotification/jobUpdate?jobId=$jobId%26status=$status</value>
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</property>
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</configuration>
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-- DROP database if EXISTS ${hive_db_name} cascade;
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-- CREATE database ${hive_db_name};
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--
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-- CREATE TABLE ${hive_db_name}.Persons (
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-- PersonID int,
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-- LastName varchar(255));
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--
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-- INSERT INTO ${hive_db_name}.Persons VALUES (1, "test_db_spyros_rec_111");
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DROP database IF EXISTS ${stats_db_name} CASCADE;
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CREATE database ${stats_db_name};
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----------------------------------------------------------------
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----------------------------------------------------------------
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-- Organization table/view and Organization related tables/views
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----------------------------------------------------------------
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----------------------------------------------------------------
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DROP TABLE IF EXISTS ${stats_db_name}.organization;
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CREATE TABLE ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.country.classid as country from ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=false;
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CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
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CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
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------------------------------------------------------------------------------------------------
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------------------------------------------------------------------------------------------------
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CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
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CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
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CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
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CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
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CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
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----------------------------
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-- Post processing - Updates
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----------------------------
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--Datasource temporary table updates
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UPDATE ${stats_db_name}.datasource_tmp set harvested ='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd where d.id=rd.datasource);
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-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
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UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
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DROP TABLE IF EXISTS ${stats_db_name}.project;
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CREATE TABLE ${stats_db_name}.project stored as parquet as
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SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
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CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END as haspubs,
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CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END as numpubs,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END as daysforlastpub,
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CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END as delayedpubs,
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p.callidentifier, p.code
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FROM ${stats_db_name}.project_tmp p
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LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
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FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
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WHERE r.type='publication'
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GROUP BY pr.id) AS prr1 on prr1.id = p.id
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LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) as daysForlastPub , count(distinct r.id) as dp
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FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
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WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
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GROUP BY pp.id) AS prr2
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on prr2.id = p.id;
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-- Publication temporary table updates
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UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Dataset temporary table updates
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UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Software temporary table updates
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UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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-- Oherresearchproduct temporary table updates
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UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
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CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend as daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id and result.type='publication' and project.id=result_projects.project;
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------------------------------------------------------------------------------------------------------
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-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
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------------------------------------------------------------------------------------------------------
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DROP TABLE IF EXISTS ${stats_db_name}.datasource;
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CREATE TABLE ${stats_db_name}.datasource stored as parquet as select * from ${stats_db_name}.datasource_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.publication;
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CREATE TABLE ${stats_db_name}.publication stored as parquet as select * from ${stats_db_name}.publication_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.dataset;
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CREATE TABLE ${stats_db_name}.dataset stored as parquet as select * from ${stats_db_name}.dataset_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.software;
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CREATE TABLE ${stats_db_name}.software stored as parquet as select * from ${stats_db_name}.software_tmp;
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DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
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CREATE TABLE ${stats_db_name}.otherresearchproduct stored as parquet as select * from ${stats_db_name}.otherresearchproduct_tmp;
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DROP TABLE ${stats_db_name}.project_tmp;
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DROP TABLE ${stats_db_name}.datasource_tmp;
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DROP TABLE ${stats_db_name}.publication_tmp;
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DROP TABLE ${stats_db_name}.dataset_tmp;
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DROP TABLE ${stats_db_name}.software_tmp;
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DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
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----------------------------------------------
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-- Re-creating views from final parquet tables
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---------------------------------------------
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-- Result
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CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct;
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--------------------------------------------------------------
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--------------------------------------------------------------
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-- 2. Publication table/view and Publication related tables/views
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--------------------------------------------------------------
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--------------------------------------------------------------
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-- Publication temporary table
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DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
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CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
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-- The following throws the following exception on CRN HUE Hive:
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-- Error while compiling statement: FAILED: SemanticException [Error 10011]: Line 2:34 Invalid function 'date_format'
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-- But runs OK on OCEAN HUE Hive
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INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal ,
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p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
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p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
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case when size(p.description) > 0 then true else false end as abstract,
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'publication' as type
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from ${openaire_db_name}.publication p
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where p.datainfo.deletedbyinference=false;
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-- INSERT INTO ${hive_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal,
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-- p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
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-- p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
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-- case when size(p.description) > 0 then true else false end as abstract,
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-- 'publication' as type
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-- from openaire.publication p
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-- where p.datainfo.deletedbyinference=false;
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CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
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CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context;
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CREATE TABLE ${stats_db_name}.publication_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN (SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
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CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.publication p;
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CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids as ids;
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create table ${stats_db_name}.publication_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.publication p lateral view explode(p.pid) pids as ppid;
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create table ${stats_db_name}.publication_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.publication p lateral view explode(p.subject) subjects as subject;
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-- 3. Publication_citations
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CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
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------------------------------------------------------
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||||
------------------------------------------------------
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-- 4. Dataset table/view and Dataset related tables/views
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||||
------------------------------------------------------
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||||
------------------------------------------------------
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-- Dataset temporary table supporting updates
|
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DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
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CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
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@ -0,0 +1 @@
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create table ${stats_db_name}.dataset_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.dataset p lateral view explode(p.subject) subjects as subject;
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@ -0,0 +1,7 @@
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INSERT INTO ${stats_db_name}.dataset_tmp select substr(d.id, 4) as id, d.title[0].value as title, d.publisher.value as publisher, cast(null as string) as journal,
|
||||
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') as year, d.bestaccessright.classname as bestlicence,
|
||||
d.embargoenddate.value as embargo_end_date, false as delayed, size(d.author) as authors , concat_ws('\u003B',d.source.value) as source,
|
||||
case when size(d.description) > 0 then true else false end as abstract,
|
||||
'dataset' as type
|
||||
from ${openaire_db_name}.dataset d
|
||||
where d.datainfo.deletedbyinference=false;
|
||||
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@ -0,0 +1,2 @@
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-- Dataset_citations
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||||
Create table ${stats_db_name}.dataset_citations as select substr(d.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.dataset d lateral view explode(d.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
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||||
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@ -0,0 +1 @@
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CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
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CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context;
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CREATE TABLE ${stats_db_name}.dataset_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
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||||
from ${openaire_db_name}.dataset p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
|
||||
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@ -0,0 +1 @@
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|||
CREATE TABLE ${stats_db_name}.dataset_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.dataset p;
|
||||
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@ -0,0 +1 @@
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CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids as ids;
|
||||
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@ -0,0 +1 @@
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create table ${stats_db_name}.dataset_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.dataset p lateral view explode(p.pid) pids as ppid;
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||||
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@ -0,0 +1,9 @@
|
|||
--------------------------------------------------------
|
||||
--------------------------------------------------------
|
||||
-- 5. Software table/view and Software related tables/views
|
||||
--------------------------------------------------------
|
||||
--------------------------------------------------------
|
||||
|
||||
-- Software temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
|
||||
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||
|
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@ -0,0 +1 @@
|
|||
create table ${stats_db_name}.software_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.software p lateral view explode(p.subject) subjects as subject;
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
INSERT INTO ${stats_db_name}.software_tmp select substr(s.id, 4) as id, s.title[0].value as title, s.publisher.value as publisher, cast(null as string) as journal,
|
||||
s.dateofacceptance.value as date, date_format(s.dateofacceptance.value,'yyyy') as year, s.bestaccessright.classname as bestlicence,
|
||||
s.embargoenddate.value as embargo_end_date, false as delayed, size(s.author) as authors , concat_ws('\u003B',s.source.value) as source,
|
||||
case when size(s.description) > 0 then true else false end as abstract,
|
||||
'software' as type
|
||||
from ${openaire_db_name}.software s
|
||||
where s.datainfo.deletedbyinference=false;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
-- Software_citations
|
||||
Create table ${stats_db_name}.software_citations as select substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.software s lateral view explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts as context;
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
CREATE TABLE ${stats_db_name}.software_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
|
||||
from ${openaire_db_name}.software p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.software p;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids as ids;
|
||||
|
|
@ -0,0 +1 @@
|
|||
create table ${stats_db_name}.software_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.software p lateral view explode(p.pid) pids as ppid;
|
||||
|
|
@ -0,0 +1,9 @@
|
|||
--------------------------------------------------------------------------------
|
||||
--------------------------------------------------------------------------------
|
||||
-- 6. Otherresearchproduct table/view and Otherresearchproduct related tables/views
|
||||
--------------------------------------------------------------------------------
|
||||
--------------------------------------------------------------------------------
|
||||
|
||||
-- Otherresearchproduct temporary table supporting updates
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
|
||||
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||
|
|
@ -0,0 +1 @@
|
|||
create table ${stats_db_name}.otherresearchproduct_topics as select substr(p.id, 4) as id, subjects.subject.qualifier.classname as type, subjects.subject.value as topic from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.subject) subjects as subject;
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp select substr(o.id, 4) as id, o.title[0].value as title, o.publisher.value as publisher, cast(null as string) as journal,
|
||||
o.dateofacceptance.value as date, date_format(o.dateofacceptance.value,'yyyy') as year, o.bestaccessright.classname as bestlicence,
|
||||
o.embargoenddate.value as embargo_end_date, false as delayed, size(o.author) as authors , concat_ws('\u003B',o.source.value) as source,
|
||||
case when size(o.description) > 0 then true else false end as abstract,
|
||||
'other' as type
|
||||
from ${openaire_db_name}.otherresearchproduct o
|
||||
where o.datainfo.deletedbyinference=false;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
-- Otherresearchproduct_citations
|
||||
Create table ${stats_db_name}.otherresearchproduct_citations as select substr(o.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") as result from ${openaire_db_name}.otherresearchproduct o lateral view explode(o.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="";
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts as context;
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources as SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
|
||||
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance) p LEFT OUTER JOIN
|
||||
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS select substr(p.id, 4) as id, p.language.classname as language from ${openaire_db_name}.otherresearchproduct p;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids as ids;
|
||||
|
|
@ -0,0 +1 @@
|
|||
create table ${stats_db_name}.otherresearchproduct_pids as select substr(p.id, 4) as id, ppid.qualifier.classname as type, ppid.value as pid from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.pid) pids as ppid;
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- 7. Project table/view and Project related tables/views
|
||||
------------------------------------------------------
|
||||
------------------------------------------------------
|
||||
-- Project_oids Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
|
||||
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) as id, oids.ids as oid from ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids as ids;
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
-- Project_organizations Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
|
||||
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) as id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization';
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
-- Project_results Table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_results;
|
||||
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) as id, substr(r.source, 4) AS result from ${openaire_db_name}.relation r WHERE r.reltype='resultProject';
|
||||
|
|
@ -0,0 +1,5 @@
|
|||
-- Project table
|
||||
----------------
|
||||
-- Creating and populating temporary Project table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
|
||||
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year STRING, end_year STRING, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||
|
|
@ -0,0 +1 @@
|
|||
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) as id, p.acronym.value as acronym, p.title.value as title, xpath_string(p.fundingtree[0].value, '//funder/name') as funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') as funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') as funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') as funding_lvl2, p.ecsc39.value as ec39, p.contracttype.classname as type, p.startdate.value as startdate, p.enddate.value as enddate, date_format(p.startdate.value, 'yyyy') as start_year, date_format(p.enddate.value, 'yyyy') as end_year, 0 as duration, 'no' as haspubs, 0 as numpubs, 0 as daysforlastpub, 0 as delayedpubs, p.callidentifier.value as callidentifier, p.code.value as code from ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
|
||||
|
|
@ -0,0 +1,8 @@
|
|||
----------------------------------------------------
|
||||
----------------------------------------------------
|
||||
-- 8. Result table/view and Result related tables/views
|
||||
----------------------------------------------------
|
||||
----------------------------------------------------
|
||||
|
||||
-- Views on temporary tables that should be re-created in the end
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence as access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence as access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
|
||||
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='resultOrganization';
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
|
||||
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result as id, pr.id as project, datediff(p.enddate, p.startdate) as daysfromend from ${stats_db_name}.result r join ${stats_db_name}.project_results pr on r.id=pr.result join ${stats_db_name}.project_tmp p on p.id=pr.id;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
-- Views on final tables
|
||||
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources as SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations as SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications as SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts as SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages as SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids as SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids as SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics as SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
|
||||
|
|
@ -0,0 +1,10 @@
|
|||
------------------------------------------------------------
|
||||
------------------------------------------------------------
|
||||
-- 9. Datasource table/view and Datasource related tables/views
|
||||
------------------------------------------------------------
|
||||
------------------------------------------------------------
|
||||
-- Datasource table creation & update
|
||||
-------------------------------------
|
||||
-- Creating and populating temporary datasource table
|
||||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
|
||||
create table ${stats_db_name}.datasource_tmp(`id` string, `name` string, `type` string, `dateofvalidation` string, `yearofvalidation` string, `harvested` boolean, `piwik_id` int, `latitude` string, `longitude` string, `websiteurl` string, `compatibility` string) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
|
||||
|
|
@ -0,0 +1,3 @@
|
|||
insert into ${stats_db_name}.datasource_tmp SELECT substr(d.id, 4) as id, officialname.value as name, datasourcetype.classname as type, dateofvalidation.value as dateofvalidation, date_format(d.dateofvalidation.value,'yyyy') as yearofvalidation, false as harvested, 0 as piwik_id, d.latitude.value as latitude, d.longitude.value as longitude, d.websiteurl.value as websiteurl, d.openairecompatibility.classid as compatibility
|
||||
from ${openaire_db_name}.datasource d
|
||||
WHERE d.datainfo.deletedbyinference=false;
|
||||
|
|
@ -0,0 +1,7 @@
|
|||
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table. To see if default values are there
|
||||
-- Creating a temporary dual table that will be removed after the following insert
|
||||
CREATE TABLE ${stats_db_name}.dual(dummy char(1));
|
||||
INSERT INTO ${stats_db_name}.dual values('X');
|
||||
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
|
||||
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
|
||||
DROP TABLE ${stats_db_name}.dual;
|
||||
|
|
@ -0,0 +1 @@
|
|||
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' where name='Unknown Repository';
|
||||
|
|
@ -0,0 +1 @@
|
|||
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
|
||||
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) as id, langs.languages as language from openaire.datasource d LATERAL VIEW explode(d.odlanguages.value) langs as languages;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
|
||||
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) as id, oids.ids as oid from ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids as ids;
|
||||
|
|
@ -0,0 +1,2 @@
|
|||
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
|
||||
CREATE TABLE ${stats_db_name}.datasource_organizations AS select substr(r.target, 4) as id, substr(r.source, 4) as organization from ${openaire_db_name}.relation r where r.reltype='datasourceOrganization';
|
||||
|
|
@ -0,0 +1 @@
|
|||
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -23,6 +23,7 @@
|
|||
<module>dhp-graph-provision</module>
|
||||
<module>dhp-dedup-scholexplorer</module>
|
||||
<module>dhp-graph-provision-scholexplorer</module>
|
||||
<module>dhp-stats-update</module>
|
||||
</modules>
|
||||
|
||||
<pluginRepositories>
|
||||
|
|
|
|||
Loading…
Reference in New Issue