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dnet-hadoop
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671 Commits

Author SHA1 Message Date
Miriam Baglioni a1aed813a5 done workflow for report and actual cleaning in the results. Renamed and moved some files 2020-11-06 15:29:28 +01:00
Claudio Atzori d10447e747 re-packaged graph dump workflow sources 2020-11-05 17:38:18 +01:00
Miriam Baglioni f8e9bda24c merge branch with master 2020-11-05 16:31:18 +01:00
Miriam Baglioni be5ed8f554 added check to avoid sending empty metadata. 2020-11-05 16:10:17 +01:00
Claudio Atzori 2148a51fae minor changes 2020-11-05 11:24:12 +01:00
Miriam Baglioni fff512a87a added one level of checking (search all the words of name surname in orcid and in paper) 2020-11-04 18:30:09 +01:00
Claudio Atzori 4625b7486e code formatting 2020-11-04 18:12:43 +01:00
Miriam Baglioni e9ac471ae9 removed dependency from classes for the pid graph dump 2020-11-04 18:04:42 +01:00
Miriam Baglioni b90a945c49 removed property files for pid graph dump 2020-11-04 17:28:33 +01:00
Miriam Baglioni bac307155a removed properties specific for pid graph dump 2020-11-04 17:28:04 +01:00
Miriam Baglioni 9c9d50f486 removed code specific for pid graph dump 2020-11-04 17:26:22 +01:00
Miriam Baglioni 5669890934 removed commented lines 2020-11-04 17:15:21 +01:00
Miriam Baglioni 6a89f59be9 removed commented lines 2020-11-04 17:13:59 +01:00
Miriam Baglioni 56150d7e5e removed all code related to the dump of pids graph 2020-11-04 17:13:12 +01:00
Miriam Baglioni 16c54a96f8 removed pid dump 2020-11-04 17:11:32 +01:00
Miriam Baglioni 44cf0b712f added repartition(1) to have all the output in a single json file 2020-11-04 17:01:08 +01:00
Miriam Baglioni 1293dd276a merge branch with master 2020-11-04 13:37:34 +01:00
Miriam Baglioni 0cac5436ff Merge branch 'dump' of code-repo.d4science.org:miriam.baglioni/dnet-hadoop into dump 2020-11-04 13:21:11 +01:00
Miriam Baglioni b610d08399 added test for the report generation 2020-11-04 13:20:16 +01:00
Miriam Baglioni c694457acc added new attribute to store the orcid fullname when provided 2020-11-04 13:19:57 +01:00
Miriam Baglioni 72abbb0510 added the link to the property file 2020-11-04 13:19:25 +01:00
Miriam Baglioni fd00d44e1e new classes for generating the report for the orcid cleaning plus new property file 2020-11-04 13:18:49 +01:00
Alessia Bardi 51808b5afd Updated descriptions 2020-11-04 12:29:48 +01:00
Alessia Bardi e6becf8659 Updated descriptions 2020-11-04 12:17:57 +01:00
Alessia Bardi 0abe0eee33 Updated descriptions 2020-11-04 12:15:30 +01:00
Alessia Bardi f6ab238f5d Updated descriptions 2020-11-04 11:50:47 +01:00
Miriam Baglioni c010a8442f fixed issue on test code 2020-11-03 17:26:51 +01:00
Miriam Baglioni 8ec7a61188 merge branch with master 2020-11-03 16:59:08 +01:00
Miriam Baglioni c209284ca7 new schemas for the entities in the dump with added descriptions 2020-11-03 16:58:08 +01:00
Miriam Baglioni 08806deddf added the splitSize non mandatory parameter. Default size 10G 2020-11-03 16:57:34 +01:00
Miriam Baglioni 7d2eda43ca added new non mandatory property publish to determine if to publish the upload or leave it pending. Default value flase 2020-11-03 16:57:01 +01:00
Miriam Baglioni cbbb1bdc54 moved business logic to new class in common for handling the zip of hte archives 2020-11-03 16:55:50 +01:00
Miriam Baglioni d4382b54df moved the tar archive with maz size on common module 2020-11-03 16:54:50 +01:00
Claudio Atzori 5310e56dba remove empy PIDs 2020-11-03 11:52:10 +01:00
Miriam Baglioni 4ee84ae724 added files for testing purposes 2020-11-02 18:25:41 +01:00
Miriam Baglioni 7dcb2eff02 added needed dependency 2020-11-02 18:25:07 +01:00
Miriam Baglioni 43ddeedd6a first part of the test 2020-11-02 18:24:25 +01:00
Miriam Baglioni 72fb425787 new logis for the cleaning of the authors orcid 2020-11-02 18:23:16 +01:00
Miriam Baglioni 967d839ba1 merge branch with master 2020-11-02 10:23:11 +01:00
Sandro La Bruzzo 754c86f33e fixed test to work on jenkins 2020-11-02 09:35:01 +01:00
Miriam Baglioni dabb33e018 changed the discriminant for which split the file 2020-10-30 17:52:22 +01:00
Miriam Baglioni 0fba08eae4 max allowed size per file 10 Gb 2020-10-30 16:05:55 +01:00
Miriam Baglioni f3de9c02ae first classes for the orcid cleaning 2020-10-30 16:02:28 +01:00
Miriam Baglioni b828587252 prevent the code to cicle indefinetly 2020-10-30 15:01:25 +01:00
Miriam Baglioni f747e303ac classes for dumping of the graph as ttl file 2020-10-30 14:13:45 +01:00
Miriam Baglioni 16baf5b69e formatting 2020-10-30 14:13:14 +01:00
Miriam Baglioni a9eef9c852 added check for possible Optional value in relation dataInfo 2020-10-30 14:12:28 +01:00
Miriam Baglioni 5f4de9a962 formatting 2020-10-30 14:11:40 +01:00
Miriam Baglioni 14bf2e7238 added option to split dumps bigger that 40Gb on different files 2020-10-30 14:09:04 +01:00
Miriam Baglioni 78fdb11c3f merge branch with master 2020-10-29 12:55:22 +01:00
Sandro La Bruzzo 1d9fdb7367 fixed spark memory issue in SparkSplitOafTODLIEntities 2020-10-28 12:30:32 +01:00
Miriam Baglioni d2374e3b9e added code to handle cases where the funding tree is not existing 2020-10-27 16:15:21 +01:00
Miriam Baglioni 5d3012eeb4 changed code to dump only the programme list and not the classification list 2020-10-27 16:14:18 +01:00
Miriam Baglioni 3241ec1777 added connection timeout and socket timeout 600 sec 2020-10-27 16:12:11 +01:00
Alessia Bardi 1425d810a8 testing mapping 2020-10-19 17:46:14 +02:00
Sandro La Bruzzo fed711da80 Merge remote-tracking branch 'origin/master' into merge_record_to_common 2020-10-13 15:32:45 +02:00
Alessia Bardi 8775a64bc1 Merge pull request 'Merging different compatibility levels (pinocchio operator)' (#47) from merge_graph into master 2020-10-09 14:44:52 +02:00
Claudio Atzori e751c1402f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-10-09 13:53:21 +02:00
Claudio Atzori b961dc7d1e added originalid to the fields in the result graph view 2020-10-09 13:53:15 +02:00
Sandro La Bruzzo eec418cd26 moved AuthoreMerger into dhp-common 2020-10-08 10:33:55 +02:00
Sandro La Bruzzo fe0a7870e6 Added test to check if merge authors works 2020-10-08 10:33:12 +02:00
Sandro La Bruzzo cd9c377d18 adpted scholexplorer Dump generation to the new Dataset definition 2020-10-08 10:10:13 +02:00
Claudio Atzori a3f37a9414 javadoc 2020-10-07 16:44:22 +02:00
Claudio Atzori 8d85a2fced [BETA wf only] datasources involved in the merge operation doesn't obey to the infra precedence policy, but relies on a custom behaviour that, given two datasources from beta and prod returns the one from prod with the highest compatibility among the two 2020-10-07 16:28:52 +02:00
Miriam Baglioni ae08b3c0dd merge branch with master 2020-10-05 11:35:55 +02:00
Miriam Baglioni 11b7eaae09 changed the name of the folder where to store the context entity from context to communities_infrastructures 2020-10-05 11:24:54 +02:00
Miriam Baglioni 32bffb0134 changed the name from communities_infrastructures to communities_infrastuctures.json 2020-10-05 11:24:17 +02:00
Miriam Baglioni 25cbcf6114 changed to solve issues about names. context renamed communities_infrastructure.json and removed the double json.gz extention to the name of the part in the tar 2020-10-02 12:17:46 +02:00
Claudio Atzori 49ae3450a9 code formatting 2020-10-02 09:43:24 +02:00
Claudio Atzori c2a6e2a9bf fixed mapping for datasource journal info (ISSNs) 2020-10-02 09:37:08 +02:00
Miriam Baglioni 01117a46e1 whole workflow activated 2020-10-01 17:19:21 +02:00
Miriam Baglioni cfb5766c6b removed double json.gz from names of files in the tar 2020-10-01 17:18:34 +02:00
Miriam Baglioni fcaedac980 merge branch with master 2020-10-01 16:46:59 +02:00
Miriam Baglioni c6e6ed1bd8 merge branch with master 2020-10-01 16:24:41 +02:00
Claudio Atzori 2e9e13444d author pids made unique by value 2020-10-01 12:50:40 +02:00
Claudio Atzori e265c3e125 cleaning functions factored out in a dedicated class 2020-10-01 10:50:15 +02:00
Claudio Atzori 4287164aba include relevantdate field in the result view 2020-10-01 10:28:55 +02:00
Miriam Baglioni 7b6a7333e6 merge branch with master 2020-09-25 16:42:07 +02:00
Miriam Baglioni 983a12ed15 temporary modification to allow the upload of files in the sandbox without the neew to recreate the mapping from scratch 2020-09-25 16:41:51 +02:00
Miriam Baglioni 8b36d19182 added property depositionId and chenage property newVersion that became string from boolean to handle the three possible distinct values 2020-09-25 16:41:15 +02:00
Miriam Baglioni ed5239f9ec added new code to handle the new possibility to upload files to an already open deposition 2020-09-25 16:34:32 +02:00
Miriam Baglioni 3a8c524fce refactor 2020-09-25 16:34:02 +02:00
Miriam Baglioni 54800fb9b0 enabled only the step to upload in zenodo 2020-09-25 14:40:22 +02:00
Miriam Baglioni de6c4d46d8 fixed conflicts 2020-09-24 15:35:01 +02:00
Claudio Atzori 044d3a0214 fixed query used to load datasources in the Graph 2020-09-24 13:48:58 +02:00
Claudio Atzori 27df1cea6d code formatting 2020-09-24 12:16:00 +02:00
Claudio Atzori fb22f4d70b included values for projects fundedamount and totalcost fields in the mapping tests. Swapped expected and actual values in junit test assertions 2020-09-24 12:10:59 +02:00
Claudio Atzori 42f55395c8 fixed order of the ISSNs returned by the SQL query 2020-09-24 12:09:58 +02:00
Claudio Atzori 9a7e72d528 using concat_ws to join textual columns from PSQL. When using || to perform the concatenation, Null columns makes the operation result to be Null 2020-09-24 10:42:47 +02:00
Claudio Atzori 9e3e93c6b6 setting the correct issn type in the datasource.journal element 2020-09-24 10:39:16 +02:00
Miriam Baglioni 39eb8ab25b changed the dump to move from h2020programme to h2020classification 2020-09-23 17:33:00 +02:00
Miriam Baglioni c2b5c780ff - 2020-09-14 14:34:03 +02:00
Miriam Baglioni e2ceefe9be - 2020-09-14 14:33:28 +02:00
Miriam Baglioni 1f893e63dc - 2020-09-14 14:33:10 +02:00
Claudio Atzori 8a523474b7 code formatting 2020-09-07 11:40:16 +02:00
Miriam Baglioni b72a7dad46 resuorce for pid graph dump 2020-08-24 17:09:01 +02:00
Miriam Baglioni 8694bb9b31 refactoring due to compilation 2020-08-24 17:07:34 +02:00
Miriam Baglioni 8a069a4fea - 2020-08-24 17:01:30 +02:00
Miriam Baglioni 34fa96f3b1 - 2020-08-24 17:00:20 +02:00
Miriam Baglioni 5fb2949cb8 added utils methods 2020-08-24 17:00:09 +02:00