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Author SHA1 Message Date
Miriam Baglioni 25f4fbceea draft of test and resources 2020-08-11 17:37:22 +02:00
Miriam Baglioni 30a2b19b65 changed metadata for deposition od covid-19 dump in Zenodo 2020-08-11 17:36:56 +02:00
Claudio Atzori f7cc52ab02 Merge pull request 'enrichment_wfs' (#39) from enrichment_wfs into master 
LGTM
 2020-08-11 17:26:13 +02:00
Miriam Baglioni 49788b532a changed to mirror changes in the schema 2020-08-11 16:05:03 +02:00
Miriam Baglioni b08511287b - 2020-08-11 16:01:36 +02:00
Miriam Baglioni 7e81a17068 changed the XQUERY to mirror the change in the code 2020-08-11 16:00:33 +02:00
Miriam Baglioni 37ad2f28e9 removed added | in prefix for datasource 2020-08-11 15:55:06 +02:00
Miriam Baglioni f31c2e9461 enabled test 2020-08-11 15:49:25 +02:00
Miriam Baglioni 2d67476417 merge branch with master 2020-08-11 15:46:04 +02:00
Miriam Baglioni 77a390878c merge upstream 2020-08-11 15:45:48 +02:00
Miriam Baglioni 6d3804e24c - 2020-08-11 15:45:12 +02:00
Miriam Baglioni 0603ec4757 changed test to upload the dump for covid-19 community 2020-08-11 15:43:25 +02:00
Miriam Baglioni 7dfd56df9d - 2020-08-11 15:42:35 +02:00
Miriam Baglioni a169d7e7c1 added test file for the MakeTar class 2020-08-11 15:40:41 +02:00
Miriam Baglioni acb0926b2e json schemas for the dumped entities and relation 2020-08-11 15:39:48 +02:00
Miriam Baglioni ff52c51f92 added the communityMapPath parameter and removed the isLookUpUrl parameter 2020-08-11 15:39:22 +02:00
Miriam Baglioni 6f43acda5e added the maketar and send to zenodo step. Adjusted wf parameters 2020-08-11 15:38:20 +02:00
Miriam Baglioni ddc19de2e9 removed the isLookUpUrl among the parameters 2020-08-11 15:37:47 +02:00
Miriam Baglioni 592a8ea573 added parameter file for maketar class 2020-08-11 15:37:14 +02:00
Miriam Baglioni 77a0951b32 added the make archive step in the workflow 2020-08-11 15:32:32 +02:00
Miriam Baglioni cf4d918787 added description, changed parameter name and added method 2020-08-11 15:27:31 +02:00
Miriam Baglioni dc5fc5366d Creation of an archive for each related dump part 2020-08-11 15:26:06 +02:00
Miriam Baglioni 0ce49049d6 added description 2020-08-11 15:25:11 +02:00
Miriam Baglioni 9bae991167 added description of the class 2020-08-11 11:20:43 +02:00
Miriam Baglioni 341dc59ead removed the repartition(1). Added code for the creation of an archive containing all the parts dumped for each community 2020-08-11 11:18:58 +02:00
Sandro La Bruzzo fe8d640aee fixed error on oozie workflow 2020-08-11 09:43:03 +02:00
Sandro La Bruzzo 304590e854 updated workflow of indexing to start from begin 2020-08-11 09:17:47 +02:00
Sandro La Bruzzo eaf0dc68a2 fixed indexing 2020-08-11 09:17:03 +02:00
Miriam Baglioni 1991a49f70 removed reference to isLookUp to get the communityMap 2020-08-10 18:02:56 +02:00
Miriam Baglioni c378c38546 disabled test. The testing functionalities for hte upload in Zenode are moved to common 2020-08-10 12:41:11 +02:00
Miriam Baglioni 63ad0ed209 changed to use communityMapPath instead of IsLookUp 2020-08-10 12:40:19 +02:00
Miriam Baglioni cec795f2ea changed resources to mirror changes in the model 2020-08-10 12:39:35 +02:00
Miriam Baglioni f50e3e7333 changed the class for which to generate the schema 2020-08-10 12:03:49 +02:00
Miriam Baglioni b8c26f656c test using communityMapPath instead of isLookUp 2020-08-10 12:02:55 +02:00
Miriam Baglioni fe88904df0 changed the wf definition 2020-08-10 12:01:14 +02:00
Miriam Baglioni 87856467e2 removed isLookUpUrl and added code to read from HDSF the communitymap 2020-08-10 11:38:41 +02:00
Miriam Baglioni 1cf7043e26 removed isLookUoUrl from the parameters 2020-08-10 11:38:03 +02:00
Claudio Atzori cf6b68ce5a Merge pull request 'data provision workflow: add nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed' (#36) from provision_indexing into master 2020-08-10 11:16:29 +02:00
Sandro La Bruzzo 0ade33ad15 updated mergeFrom function for DLI Unknown 2020-08-10 10:18:35 +02:00
Miriam Baglioni 46986aae2d added the new parameter for newdeposion/newversion and concept_record_id 2020-08-07 18:00:06 +02:00
Miriam Baglioni 3aedfdf0d6 added option to do a new deposition or new version of an old deposition 2020-08-07 17:49:14 +02:00
Miriam Baglioni 1b3ad1bce6 filter out authors pid (only orcid). Added check to get unique provenance for context id. filtr out countries with code UNKNOWN 2020-08-07 17:48:18 +02:00
Miriam Baglioni 5ceb8c5f0a moved constants from graph.Constants 2020-08-07 17:46:47 +02:00
Miriam Baglioni 6c65c93c0e refactoring 2020-08-07 17:45:35 +02:00
Miriam Baglioni 68adf86fe4 refactoring 2020-08-07 17:43:20 +02:00
Miriam Baglioni 26d2ad6ebb refactoring 2020-08-07 17:41:56 +02:00
Miriam Baglioni 9675af7965 refactoring 2020-08-07 17:41:07 +02:00
Miriam Baglioni 346a91f4d9 Added constants 2020-08-07 17:35:39 +02:00
Miriam Baglioni d52b0e1797 no use of IsLookUp. The query is done once and its result stored on HDFS. The path to the result is given instead of the isLookUpUrl 2020-08-07 17:34:40 +02:00
Miriam Baglioni ae1b7fbfdb changed method signature from set of mapkey entries to String representing path on file system where to find the map 2020-08-07 17:32:27 +02:00
Miriam Baglioni 931fa2ff00 removed dependencies 2020-08-07 16:46:37 +02:00
Miriam Baglioni 545ea9f77e moved in common. Zenodo response model and APIClient to deposit in Zenodo 2020-08-07 16:44:51 +02:00
Sandro La Bruzzo ddb1446ceb fixed test 2020-08-07 11:34:33 +02:00
Sandro La Bruzzo 718bc7bbc8 implemented provision workflows using the new implementation with Dataset 2020-08-07 11:05:18 +02:00
Miriam Baglioni da9b012c15 fixed dewcription 2020-08-06 11:55:44 +02:00
Miriam Baglioni 6dbadcf181 the new schema for the dumped result 2020-08-06 11:05:56 +02:00
Sandro La Bruzzo a44e5abaa7 reformat code 2020-08-06 10:30:22 +02:00
Sandro La Bruzzo 4fb1821fab Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-08-06 10:28:31 +02:00
Sandro La Bruzzo 9d9e9edbd2 improved extractEntity Relation workflows using dataset 2020-08-06 10:28:24 +02:00
Miriam Baglioni adf0ca5aa7 test to send is from hdfs 2020-08-05 14:24:43 +02:00
Miriam Baglioni 14eda4f46e added method to try to put inputstream to zenodo 2020-08-05 14:18:25 +02:00
Miriam Baglioni e737a47270 added classes to try to send input stream to zenodo for the upload 2020-08-05 14:17:40 +02:00
Miriam Baglioni 873e9cd50c changed hadoop setting to connect to s3 2020-08-04 15:37:25 +02:00
Alessia Bardi a29565ff57 code formatting 2020-08-04 12:55:27 +02:00
Alessia Bardi 01db29e208 fixes redmine issue #5846: datacite and its different namespace declarations 2020-08-04 12:53:48 +02:00
Alessia Bardi b4e4e5f858 do not duplicate result PIDs 2020-08-04 12:52:14 +02:00
Alessia Bardi 09a323d18d testing a dataset from Nakala 2020-08-04 12:50:52 +02:00
Alessia Bardi c35bf486cc added handle among the possible PIDs 2020-08-04 12:50:12 +02:00
Miriam Baglioni 5b651abf82 merge branch with master 2020-08-04 10:14:07 +02:00
Miriam Baglioni 88e4c3b751 added default trust to context bulktagged 2020-08-04 10:13:25 +02:00
Miriam Baglioni f9342cb484 added constant 2020-08-03 18:32:35 +02:00
Miriam Baglioni 96c3c891f4 added trust 2020-08-03 18:32:17 +02:00
Miriam Baglioni 53656600ad changed XQuery to select only community and ri with status not hidden 2020-08-03 18:29:30 +02:00
Miriam Baglioni b34177d8ef merge upstream 2020-08-03 18:13:42 +02:00
Miriam Baglioni 901ae37f7b added step to workflow 2020-08-03 18:12:54 +02:00
Miriam Baglioni fa38cdb10b added resource 2020-08-03 18:11:12 +02:00
Miriam Baglioni e9fcc0b2f1 commented test unit - to decide change for mirroring the changed logics 2020-08-03 18:10:53 +02:00
Miriam Baglioni e43aeb139a added new property file and changed some parameter to old files 2020-08-03 18:07:28 +02:00
Miriam Baglioni aa9f3d9698 changed logic for save in s3 directly 2020-08-03 18:06:18 +02:00
Miriam Baglioni d465f0eec9 added fulltext to result 2020-08-03 18:03:27 +02:00
Miriam Baglioni ec4b392d12 added new dependencies for writing on s3 2020-08-03 17:57:04 +02:00
Miriam Baglioni c892c7dfa7 changed to query for community map just once and save the result for remaining executions 2020-08-03 17:56:31 +02:00
Claudio Atzori 3a11a387a9 data provision workflow enhancement: added nodes to perform DELETE BY QUERY before the indexing begins and COMMIT after the indexing is completed 2020-08-03 14:28:08 +02:00
Alessia Bardi 8cc067fe76 specific test for claims 2020-08-03 11:17:50 +02:00
Claudio Atzori a89b6cc3ba Merge pull request 'nsprefix_blacklist' (#34) from nsprefix_blacklist into master 2020-07-31 11:52:23 +02:00
Sandro La Bruzzo 0c3bc9ea4b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-31 09:07:18 +02:00
Sandro La Bruzzo 168bfb496a adopted dedup to the new schema 2020-07-31 09:06:57 +02:00
Michele Artini 652b13abb6 Merge branch 'master' into nsprefix_blacklist 2020-07-31 07:58:37 +02:00
Enrico Ottonello 0377b40fba output to one parquet file 2020-07-30 18:38:07 +02:00
Claudio Atzori cd631bb5bc defaults fixed in the cleaning workflow forces result.publisher to NULL when result.publisher.value in empty 2020-07-30 17:03:53 +02:00
Miriam Baglioni 872d7783fc - 2020-07-30 16:50:36 +02:00
Miriam Baglioni 57c87b7653 re-implemented to fix issue on not serializable Set<String> variable 2020-07-30 16:43:43 +02:00
Miriam Baglioni ef8e5957b5 added specific directory where to save results 2020-07-30 16:42:46 +02:00
Miriam Baglioni 75f3361c85 - 2020-07-30 16:41:31 +02:00
Miriam Baglioni 3f695b25fa refactoring 2020-07-30 16:40:15 +02:00
Miriam Baglioni e623f12bef refactoring 2020-07-30 16:32:59 +02:00
Miriam Baglioni ff7d05abb4 added support class to store the couple organizationId representativeId gaot from sql query on hive 2020-07-30 16:32:04 +02:00
Miriam Baglioni cf6d80b2ab added command to close the writer 2020-07-30 16:31:22 +02:00
Miriam Baglioni f985bca37b added USER_CLAIM constant value 2020-07-30 16:25:26 +02:00
Claudio Atzori 4bbfcf1ac6 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-30 16:25:06 +02:00
Claudio Atzori 4ff8007518 added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step 2020-07-30 16:24:39 +02:00
Miriam Baglioni 6f1c40a933 - 2020-07-30 16:24:28 +02:00
Miriam Baglioni 2b66a93f9e added property file that was missing 2020-07-30 16:24:17 +02:00
Michele Artini bdece15ca0 blacklist of nsprefix 2020-07-30 16:13:38 +02:00
Enrico Ottonello 196f36c6ed fix publication dataset creation 2020-07-30 13:38:33 +02:00
Sandro La Bruzzo c97c8f0c44 implemented new oozie job to extract entities in a separate dataset 2020-07-30 12:13:58 +02:00
Sandro La Bruzzo 3010a362bc updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:56 +02:00
Sandro La Bruzzo 487226f669 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-30 09:25:39 +02:00
Sandro La Bruzzo 16ae3c9ccf updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:32 +02:00
Miriam Baglioni ee8420c6b3 added resource for datasource test 2020-07-29 18:28:43 +02:00
Miriam Baglioni 76bcab98ce added code to filter out null originalId from the dump 2020-07-29 18:28:21 +02:00
Miriam Baglioni ef1d8aef17 added one test to verify the dump for the datasources 2020-07-29 18:27:46 +02:00
Miriam Baglioni 86bab79512 - 2020-07-29 18:20:22 +02:00
Miriam Baglioni 31791dcf3d fixed wrong property file path name 2020-07-29 18:20:08 +02:00
Miriam Baglioni 9e722aa1ef - 2020-07-29 18:00:08 +02:00
Miriam Baglioni d22f106f27 added constant to identify datasource associated to funders 2020-07-29 17:56:55 +02:00
Miriam Baglioni 40e194fe2f added check to not dump datasources related to funders 2020-07-29 17:56:18 +02:00
Miriam Baglioni b48934f6df changed the workflow name 2020-07-29 17:43:43 +02:00
Miriam Baglioni 1433db825d refactorign 2020-07-29 17:43:24 +02:00
Miriam Baglioni 074e9ab75e refactoring 2020-07-29 17:42:50 +02:00
Miriam Baglioni 8ad8dac7d4 merge branch with fork master 2020-07-29 17:38:28 +02:00
Miriam Baglioni 9e997e63a2 merge upstream 2020-07-29 17:38:14 +02:00
Miriam Baglioni 9fa82dc93b fixed issue 2020-07-29 17:36:16 +02:00
Miriam Baglioni 8907648d6a - 2020-07-29 17:35:47 +02:00
Miriam Baglioni 536e7f6352 added and changed resources for testing of the whole graph dump and of community related products dumps 2020-07-29 17:33:34 +02:00
Miriam Baglioni 4d7f590493 testings for the whole graph dump 2020-07-29 17:32:37 +02:00
Miriam Baglioni a2f73ec2c7 changed due to changes in the model 2020-07-29 17:32:02 +02:00
Miriam Baglioni 481585e9d3 - 2020-07-29 17:31:41 +02:00
Miriam Baglioni 40a8dafbdc - 2020-07-29 17:30:44 +02:00
Miriam Baglioni de2ebb467e changed due to changes in the model 2020-07-29 17:08:02 +02:00
Miriam Baglioni d0ff2a56fb - 2020-07-29 17:06:53 +02:00
Miriam Baglioni b96dedb56b changed due to changes in the model 2020-07-29 17:05:31 +02:00
Miriam Baglioni 6d0f08277b classes to implement the dump of the whole graph. 2020-07-29 17:03:19 +02:00
Miriam Baglioni 8d4327b292 input parameters and workflow definition for the dump of the whole graph 2020-07-29 17:00:34 +02:00
Miriam Baglioni b5f995ab12 refactoring 2020-07-29 16:59:48 +02:00
Miriam Baglioni f7a87cc447 added new constants value 2020-07-29 16:58:40 +02:00
Miriam Baglioni b71d12cf26 refactoring 2020-07-29 16:52:44 +02:00
Miriam Baglioni a8d65b68cb changed to delete the part to check if it was a test or a real execution 2020-07-29 16:47:57 +02:00
Miriam Baglioni 3ec2392904 Added new class to move the place the split is effectively run 2020-07-29 16:46:50 +02:00
Michele Artini 8ba94833bd added an es prop 2020-07-29 14:16:08 +02:00
Miriam Baglioni 178c2729a7 changed the path to reach the java class to be executed 2020-07-29 12:29:51 +02:00
Miriam Baglioni 437ac12139 removed unused parameter 2020-07-29 12:28:16 +02:00
Enrico Ottonello c82b15b5f4 migrate configuration to ocean, fix publication dataset creation 2020-07-28 15:23:52 +02:00
Claudio Atzori 6f11c0496e fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 15:01:58 +02:00
Claudio Atzori f680eb3e12 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-28 14:10:56 +02:00
Claudio Atzori 985b360c31 fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 14:10:52 +02:00
Michele Artini 3acd632123 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-28 12:02:30 +02:00
Michele Artini 35e6e9c064 tests 2020-07-28 12:02:15 +02:00
Enrico Ottonello a6acb37689 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-07-28 08:07:40 +02:00
Claudio Atzori ee832f358e Merge pull request 'stats_wf_extensions_and_corrections' (#28) from spyros/dnet-hadoop:stats_wf_extensions_and_corrections into master 
Thank you Guys! The update workflow will be made available to the beta & production orchestration systems under the HDFS path

```/lib/dnet/oa/graph/stats/oozie_app```
 2020-07-27 16:02:03 +02:00
miconis d47352cbc7 refactoring of the procedure for the id generation, minor changes and addition of a comparation on the original id and the origin datasource 2020-07-24 20:10:47 +02:00
Antonis Lempesis 4ac8ebe427 correctly calculating the project duration 2020-07-24 19:50:40 +03:00
Antonis Lempesis 18d9464b52 creating shadow db only if it not exists... 2020-07-24 19:50:40 +03:00
Antonis Lempesis e217d496ab added the dest db... 2020-07-24 19:50:40 +03:00
Antonis Lempesis b16bb68b9f added the target db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis 1ee7eeedf3 added the source db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis cecbbfa0fc added missing tables and views: contexts, creation_date, funder 2020-07-24 19:50:40 +03:00
Antonis Lempesis 25b7a615f5 moved datasource_sources table creating in the datasource section 2020-07-24 19:50:40 +03:00
Antonis Lempesis a8da4ab9c0 years in projects are now integers 2020-07-24 19:50:40 +03:00
Antonis Lempesis c9cfc165d9 not using impala since the resulting tables are not visible 2020-07-24 19:50:40 +03:00
Antonis Lempesis dd3d6a6e15 compute stats for the used and new impala tables 2020-07-24 19:50:40 +03:00
Antonis Lempesis e6f50de6ef Separated impala from hive steps 2020-07-24 19:50:40 +03:00
Antonis Lempesis de49173420 fixed a typo in queries 2020-07-24 19:50:40 +03:00
antleb 391cf80fb8 Added peer-reviewed, green, gold tables and fields in result. Added shortcuts from result-country 2020-07-24 19:50:40 +03:00
antleb 68389d0125 Corrected the script used by the last step of the wf 2020-07-24 19:50:40 +03:00
antleb ec52141f1a changed refereed type from value to clssname 2020-07-24 19:50:40 +03:00
Spyros Zoupanos 63cd797aba Comment out step 15 to make it work with the new schema of Claudio 2020-07-24 19:50:40 +03:00
Spyros Zoupanos 138c6ddffa Insert statement to datasource table that takes into account the piwik_id of the openAIRE graph 2020-07-24 19:50:40 +03:00
Spyros Zoupanos 3630794cef Fix to consider the relationships that have been 'virtually deleted' for project_results - defect #5607 2020-07-24 19:50:40 +03:00
Spyros Zoupanos 5546f29e63 Corrections on the shadow schema and the impala table stats calculation 2020-07-24 19:50:40 +03:00
Spyros Zoupanos adf8a025d2 Adding more relations (Sources, Licences, Additional) and shadow schema as provided and discussed with Antonis Lempesis 2020-07-24 19:50:40 +03:00
Spyros Zoupanos 657a40536b Corrections by Spyros: Scipt cleanup, corrections and re-arrangement 2020-07-24 19:50:40 +03:00
Giorgos Alexiou 477fa6234d Script re-organisation and adding table invalidations needed for impala 2020-07-24 19:50:40 +03:00
Miriam Baglioni 6c2223d1fc added code to get the openaire id for contexts 2020-07-24 17:30:15 +02:00
Miriam Baglioni afd54c1684 removed not needed upload and refactoring 2020-07-24 17:28:56 +02:00
Miriam Baglioni 7b0569d989 changed to map also the result associated to the whole graph 2020-07-24 17:28:11 +02:00
Miriam Baglioni 082225ad61 - 2020-07-24 17:27:26 +02:00
Miriam Baglioni 968c59d97a added teh logic to dump also the products for the whole graph. They will miss collected from and context information that will be materialized as new relations 2020-07-24 17:25:19 +02:00
Miriam Baglioni 332258d199 split the classes related to the communities dump and to the whole graph dump 2020-07-24 17:21:48 +02:00
Claudio Atzori 56bbfdc65d introduced parameter 'numParitions', driving the hive DB table data partitioning. Currently specified only for table 'project' 2020-07-23 08:54:10 +02:00
miconis b260fee787 implementation of the dedup_id generation using pids to make the graph more stable 2020-07-22 17:29:48 +02:00
Sandro La Bruzzo 9ab594ccf6 fixed test 2020-07-21 10:36:21 +02:00
Claudio Atzori ebf60020ac map results as OPRs in case of missing //CobjCategory/@type and the vocabulary dnet:result_typologies doesn't resolve the super type 2020-07-20 19:01:10 +02:00
Miriam Baglioni 355d7e426e added dumo for project - not finished 2020-07-20 18:54:43 +02:00
Miriam Baglioni a2f01e5259 added getter and setter 2020-07-20 18:54:17 +02:00
Miriam Baglioni 40bbe94f7c merge with master fork 2020-07-20 18:10:03 +02:00
Miriam Baglioni 2a15494b16 merge upstream 2020-07-20 18:05:01 +02:00
Miriam Baglioni 23160b4d29 realignment of the workflow classes with the changes in the structure of the module 2020-07-20 18:04:30 +02:00
Miriam Baglioni b904e0699a - 2020-07-20 18:02:53 +02:00
Miriam Baglioni 3aab7680f6 changed the test results 2020-07-20 18:00:43 +02:00
Miriam Baglioni cde0300801 moved from projects to project 2020-07-20 17:57:35 +02:00
Miriam Baglioni 5076e4f320 changed test to comply with the modifications 2020-07-20 17:55:18 +02:00
Miriam Baglioni 08dbd99455 changed to dump the whole results graph by usign classes already implemented for communities. Added class to dump also organization 2020-07-20 17:54:28 +02:00
Miriam Baglioni e47ea9349c extended some types by adding provenance as the couple (provenance, trust) and moved some classes to be used by the complete graph dump also 2020-07-20 17:46:27 +02:00
Claudio Atzori 32f5e466e3 imports cleanup 2020-07-20 17:42:58 +02:00
Claudio Atzori 54ac583923 code formatting 2020-07-20 17:37:08 +02:00
Claudio Atzori 124e7ce19c in case of missing attribute //dr:CobjCategory/@type the resulttype is derived by looking up the vocabulary dnet:result_typologies with the 1st instance type available 2020-07-20 17:33:37 +02:00
Claudio Atzori 050dda223d Merge pull request 'removed duplicated fields' (#25) from unique_field_in_lists into master 
Looks good as a temporary workaround. I agree the model could seamlessly make the distinct operation by using HashSets instead of Linked (or Array) Lists.

The task to update the model in such a way is added on #9#issuecomment-1583

Thanks!
 2020-07-20 12:12:50 +02:00
Claudio Atzori e0c4cf6f7b added parameter to drive the graph merge strategy: priority (BETA|PROD) 2020-07-20 10:48:01 +02:00
Claudio Atzori 94ccdb4852 Merge branch 'master' into merge_graph 2020-07-20 10:14:55 +02:00
Claudio Atzori 0937c9998f Merge branch 'deduptesting' 2020-07-20 10:00:20 +02:00
Claudio Atzori de72b1c859 cleanup 2020-07-20 09:59:11 +02:00
Michele Artini 331a3cbdd0 fixed originalId 2020-07-20 09:50:29 +02:00
Michele Artini c59c5369b1 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-18 09:40:54 +02:00
Michele Artini 346a1d2b5a update eventId generator 2020-07-18 09:40:36 +02:00
Sandro La Bruzzo 9116d75b3e Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-17 18:01:30 +02:00
Miriam Baglioni d7d84c8217 - 2020-07-17 14:03:23 +02:00
Miriam Baglioni 47c7122773 changed priority from beta to production 2020-07-17 12:56:35 +02:00
Michele Artini 442f30930c removed duplicated fields 2020-07-17 12:25:36 +02:00
Michele Artini 3adedd0a68 trust truncated to 3 decimals 2020-07-17 11:58:11 +02:00
Claudio Atzori 1781609508 code formatting 2020-07-16 19:06:56 +02:00
Claudio Atzori db8b90a156 renamed CORE -> BETA 2020-07-16 19:05:13 +02:00
Miriam Baglioni 44e1c40c42 merge upstream 2020-07-16 18:49:38 +02:00
Claudio Atzori 878f2b931c Merge branch 'master' into merge_graph 2020-07-16 16:34:24 +02:00
Claudio Atzori cc5d13da85 introduced parameter shouldIndex (true|false) 2020-07-16 13:46:39 +02:00
Claudio Atzori b098cc3cbe avoid repeating identical values for fields: source, description 2020-07-16 13:45:53 +02:00
Claudio Atzori 805de4eca1 fix: filter the blocks with size = 1 2020-07-16 10:11:32 +02:00
Claudio Atzori 4b9fb2ffb8 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-15 11:26:04 +02:00
Claudio Atzori b90389bac4 code formatting 2020-07-15 11:24:48 +02:00
Claudio Atzori 4e6f46e8fa filter blocks with one record only 2020-07-15 11:22:20 +02:00
Michele Artini 262c29463e relations with multiple datasources 2020-07-15 09:18:40 +02:00
Claudio Atzori 7d6e269b40 reverted CreateRelatedEntitiesJob_phase1 to its previous state 2020-07-13 22:54:04 +02:00
Claudio Atzori 8e97598eb4 avoid to NPE in case of null instances 2020-07-13 20:46:14 +02:00
Claudio Atzori 06def0c0cb SparkBlockStats allows to repartition the input rdd via the numPartitions workflow parameter 2020-07-13 20:09:06 +02:00
miconis b52c246aed merge done 2020-07-13 19:57:02 +02:00
miconis b8a45041fd minor changes 2020-07-13 19:53:18 +02:00
Claudio Atzori 66f9f6d323 adjusted parameters for the dedup stats workflow 2020-07-13 19:26:46 +02:00
miconis 03ecfa5ebd implementation of the test class for the new block stats spark action 2020-07-13 18:48:23 +02:00
miconis 10e08ccf45 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-13 18:22:45 +02:00
miconis 9258e4f095 implementation of a new workflow to compute statistics on the blocks 2020-07-13 18:22:34 +02:00
Claudio Atzori c6f6fb0f28 code formatting 2020-07-13 16:46:13 +02:00
Claudio Atzori 8d2102d7d2 Merge branch 'deduptesting' 2020-07-13 16:32:43 +02:00
Claudio Atzori 344a90c2e6 updated assertions in propagateRelationTest 2020-07-13 16:32:04 +02:00
Claudio Atzori 1143f426aa WIP SparkCreateMergeRels distinct relations 2020-07-13 16:13:36 +02:00
Claudio Atzori 8c67938ad0 configurable number of partitions used in the SparkCreateSimRels phase 2020-07-13 16:07:07 +02:00
Claudio Atzori c73168b18e Merge branch 'deduptesting' of https://code-repo.d4science.org/D-Net/dnet-hadoop into deduptesting 2020-07-13 15:54:58 +02:00
Claudio Atzori c8284bab06 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:54:51 +02:00
Sandro La Bruzzo 1d133b7fe6 update test 2020-07-13 15:52:41 +02:00
Michele Artini 3635d05061 poms 2020-07-13 15:52:23 +02:00
Claudio Atzori 7dd91edf43 parsing of optional parameter 2020-07-13 15:40:41 +02:00
Claudio Atzori 4c101a9d66 WIP SparkCreateMergeRels distinct relations 2020-07-13 15:31:38 +02:00
Claudio Atzori 8a612d861a WIP SparkCreateMergeRels distinct relations 2020-07-13 15:30:57 +02:00
Sandro La Bruzzo 9ef2385022 implemented test for cut of connected component 2020-07-13 15:28:17 +02:00
Sandro La Bruzzo d561b2dd21 implemented cut of connected component 2020-07-13 14:18:42 +02:00
Miriam Baglioni 8e0e090d7a merge upstream 2020-07-13 12:46:55 +02:00
Claudio Atzori e2093e42db Merge branch 'master' into deduptesting 2020-07-13 10:57:49 +02:00
Michele Artini 2c4ed9a043 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-13 10:55:39 +02:00
Michele Artini ccbe5c5658 fixed import of eu.dnetlib.dhp:dnet-openaire-broker-common 2020-07-13 10:55:27 +02:00
Claudio Atzori 7a3fd9f54c dedup relation aggregator moved into dedicated class 2020-07-13 10:11:36 +02:00
Alessia Bardi 7e96105947 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-12 19:29:12 +02:00
Alessia Bardi b7a39731a6 assert, not print 2020-07-12 19:28:56 +02:00
Miriam Baglioni f9ad6f3255 Merge branch 'dump' of code-repo.d4science.org:miriam.baglioni/dnet-hadoop into dump 2020-07-10 19:42:53 +02:00
Miriam Baglioni c27f12d6e8 avoid to consider _SUCCESS file 2020-07-10 19:42:23 +02:00
Claudio Atzori 770adc26e9 WIP aggregator to make relationships unique 2020-07-10 19:35:10 +02:00
Claudio Atzori ecf119f37a Merge branch 'master' into deduptesting 2020-07-10 19:04:16 +02:00
Claudio Atzori 31071e363f Merge branch 'provision_indexing' 2020-07-10 19:03:57 +02:00
Claudio Atzori 06c1913062 added different limits for grouping by source and by target, incremented spark.sql.shuffle.partitions for the join operations 2020-07-10 19:03:33 +02:00
Claudio Atzori cc77446dc4 added dbSchema parameter to the raw_db workflow 2020-07-10 19:01:50 +02:00
Claudio Atzori 4c3836f62e materialize the related entities before joining them 2020-07-10 19:00:44 +02:00
Michele Artini e1ae964bc4 stats 2020-07-10 16:12:08 +02:00
Claudio Atzori 752d28f8eb make the relations produced by the dedup SparkPropagateRelation jon unique 2020-07-10 15:09:50 +02:00
Sandro La Bruzzo c01efed79b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-10 14:44:57 +02:00
Sandro La Bruzzo a7d3977481 added generation of EBI Dataset 2020-07-10 14:44:50 +02:00
Claudio Atzori b21866a2da allow to set different to relations cut points by source and by target; adjusted weight assigned to relationship types 2020-07-10 13:59:48 +02:00
Claudio Atzori ff4d6214f1 experimenting with pruning of relations 2020-07-10 10:06:41 +02:00
Miriam Baglioni faea30cda0 - 2020-07-09 14:05:21 +02:00
Michele Artini 2d742a84ae DedupConfig as json file 2020-07-09 12:53:46 +02:00
Miriam Baglioni a634794242 merge upstream 2020-07-09 11:46:51 +02:00
Michele Artini a44b9b36b9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-09 11:02:31 +02:00
Michele Artini 1c6a171633 updated pom 2020-07-09 11:02:09 +02:00
Claudio Atzori 3c728aaa0c trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:39:51 +02:00
Claudio Atzori 18c555cd79 Merge branch 'master' into deduptesting 2020-07-08 22:32:01 +02:00
Claudio Atzori 4365cf41d7 trying to overcome OOM errors during duplicate scan phase 2020-07-08 22:31:46 +02:00
Claudio Atzori 67e1d222b6 bulk cleaning when found null or empty, sets bestaccessrights evaluating the result instances 2020-07-08 17:53:35 +02:00
Alessia Bardi 853e8d7987 test for software merge 2020-07-08 17:03:53 +02:00
Claudio Atzori 610d377d57 first implementation of the BETA & PROD graphs merge procedure 2020-07-08 16:54:26 +02:00
Alessia Bardi 9a898c0e4c Json schema generator 2020-07-08 12:52:00 +02:00
Alessia Bardi 636f9ce7d6 json schema generator lib 2020-07-08 12:50:57 +02:00
Alessia Bardi 8f83b726fa Dump json schema compliant to json schema Draft 7 2020-07-08 12:48:46 +02:00
Claudio Atzori e2ea30f89d updated graph construction workflow definition: cleaning wf moved at the bottom to include cleaning of the information produced by the enrichment workflows 2020-07-08 12:16:24 +02:00
Miriam Baglioni 1b0b968548 fixed issue on substring 2020-07-08 12:11:51 +02:00
Miriam Baglioni 7fe00cb4fb - 2020-07-08 10:29:37 +02:00
Miriam Baglioni 375ef07d7b changed the description for the upload 2020-07-07 18:41:27 +02:00
Miriam Baglioni 35c8265793 added the json extention to filename 2020-07-07 18:29:49 +02:00
Miriam Baglioni 81434f8e5e added method newInstance 2020-07-07 18:26:10 +02:00
Miriam Baglioni 817cddfc52 - 2020-07-07 18:25:12 +02:00
Miriam Baglioni a66aa9bd83 removed unuseful tests 2020-07-07 18:25:00 +02:00
Miriam Baglioni 9b20a21b24 removed unuseful tests 2020-07-07 18:23:37 +02:00
Miriam Baglioni 8a1b42ff21 added check to verify that dump contains at least one product 2020-07-07 18:21:35 +02:00
Miriam Baglioni d86adb82a7 - 2020-07-07 18:20:51 +02:00
Miriam Baglioni b2782025f6 enabled the whole workflow to run. Added property to give priority to depenedency in the classpath - to solve conflicts 2020-07-07 18:10:47 +02:00
Miriam Baglioni 83d2c84b77 added constraints to xquery so that to get only profiles with status manager or all 2020-07-07 18:09:48 +02:00
Miriam Baglioni 4c8d86493c - 2020-07-07 18:09:06 +02:00
Miriam Baglioni 0208bc18f3 added new resource for testing 2020-07-07 17:47:24 +02:00
Miriam Baglioni f5bb65c9ef the json schema for the dump of the results 2020-07-07 17:34:40 +02:00
Michele Artini dffa0b01a2 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-07 15:37:29 +02:00
Michele Artini efadbdb2bc fixed a bug with duplicated events 2020-07-07 15:37:13 +02:00
Claudio Atzori 8af8e7481a code formatting 2020-07-07 14:23:34 +02:00
Claudio Atzori b383ed42fa pass optional parameter relationFilter to the PrepareRelationJob implementation 2020-07-07 14:21:28 +02:00
Claudio Atzori 911894a987 Merge branch 'deduptesting' 2020-07-07 14:20:43 +02:00
Miriam Baglioni c19818a3f8 merge branch with fork master 2020-07-06 13:58:23 +02:00
Miriam Baglioni d22240c0ba merge upstream 2020-07-06 13:58:02 +02:00
Enrico Ottonello ca37d3427b separate workflow to parse orcid summaries, activities and generate dataset with no doi publications; test 2020-07-03 23:30:31 +02:00
Michele Artini edf6c6c4dc Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-03 11:48:24 +02:00
Michele Artini 04bebb708c some fixes 2020-07-03 11:48:12 +02:00
Enrico Ottonello 1729cc5cf3 publication conversion from json to oaf test 2020-07-02 18:46:20 +02:00
Claudio Atzori c3d67f709a adjusted dedup configuration for result entities: using new wordssuffixprefix clustering function, removed ngrampairs, adjusted queueMaxSize (800) and slidingWindowSize (80) 2020-07-02 17:35:22 +02:00
Miriam Baglioni f8bf4acd76 - 2020-07-02 16:03:11 +02:00
Miriam Baglioni e6c79d44e6 - 2020-07-02 16:02:02 +02:00
Miriam Baglioni d7f6f0c216 changed code to use other lib 2020-07-02 16:01:34 +02:00
Miriam Baglioni 8fdc9e070c added dependency to OkHttp 2020-07-02 16:01:08 +02:00
Miriam Baglioni 94500a581b merge branch with fork master 2020-07-02 14:25:39 +02:00
Miriam Baglioni c133a23cf0 merge upstream 2020-07-02 14:24:57 +02:00
Claudio Atzori 1d39f7901c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-02 12:45:01 +02:00
Claudio Atzori 0f77cac4b5 fix: deduper must use queueMaxSize instead of groupMaxSize for the block definition 2020-07-02 12:43:51 +02:00
Sandro La Bruzzo 18b9330312 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-02 12:43:19 +02:00
Michele Artini b413db0bff white/blacklists 2020-07-02 12:43:03 +02:00
Claudio Atzori d380b85246 unit test for the preparation of the relations 2020-07-02 12:42:13 +02:00
Claudio Atzori ed1c7e5d75 fixed workflow for the import of the claims alone 2020-07-02 12:40:21 +02:00
Sandro La Bruzzo 07f0723fa7 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-02 12:37:49 +02:00
Sandro La Bruzzo 1d420eedb4 added generation of EBI Dataset 2020-07-02 12:37:43 +02:00
Claudio Atzori e4a29a4513 fixed workflow for the import of the claims alone 2020-07-02 12:36:33 +02:00
Enrico Ottonello 5525f57ec8 converter from orcid work json to oaf 2020-07-01 18:36:14 +02:00
Michele Artini 3bcdfbabe9 list with limits 2020-07-01 08:42:39 +02:00
Michele Artini 59a5421c24 indexing, accumulators, limited lists 2020-06-30 16:17:09 +02:00
Enrico Ottonello b7b6be12a5 fixed enriched works generation 2020-06-29 18:03:16 +02:00
Michele Artini 6f13673464 accumulators 2020-06-29 16:33:32 +02:00
Sandro La Bruzzo dab783b173 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-29 09:05:00 +02:00
Michele Artini a6ea432435 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-29 08:44:20 +02:00
Michele Artini 35ae381d28 all events matchers 2020-06-29 08:43:56 +02:00
Claudio Atzori 7817338e05 added test to verify the relation pre-processing 2020-06-26 17:58:33 +02:00
Enrico Ottonello b2213b6435 merged with dnet version 2020-06-26 17:27:34 +02:00
Enrico Ottonello c5e149c46e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-06-26 16:15:38 +02:00
Claudio Atzori 8d59fdf34e WIP: dataset based PrepareRelationsJob 2020-06-26 14:32:58 +02:00
Michele Artini 2393d9da2f limits 2020-06-26 11:20:45 +02:00
Enrico Ottonello d6498278ed added workflow to generate seq(orcidId,work) and seq(orcidId,enrichedWork) 2020-06-25 18:43:29 +02:00
Sandro La Bruzzo 96ce124b59 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-25 17:00:43 +02:00
Miriam Baglioni 4a7de07ea2 refactoring 2020-06-25 16:32:40 +02:00
Miriam Baglioni 54a12978d3 fixed issue in xquery 2020-06-25 16:30:20 +02:00
Michele Artini 408165a756 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-25 15:53:35 +02:00
Michele Artini e8fb305f18 compilation of event map 2020-06-25 15:53:20 +02:00
Michele Artini 4eb3e109d7 compilation of event map 2020-06-25 15:45:50 +02:00
Claudio Atzori d839e88783 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-25 14:06:30 +02:00
Claudio Atzori 6f5771c1c9 sets author.rank when null 2020-06-25 14:06:21 +02:00
Michele Artini e28033c6d8 some fixes 2020-06-25 13:01:09 +02:00
Claudio Atzori 216975c4ec restored complete provision workflow 2020-06-25 12:55:52 +02:00
Claudio Atzori 2d77d3a388 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-25 12:54:30 +02:00
Claudio Atzori 93f627ea51 code formatting 2020-06-25 12:54:21 +02:00
Miriam Baglioni 05a99cfb61 change the position of value and description elements in the workflow definition 2020-06-25 12:36:08 +02:00
Claudio Atzori 7df2712824 Merge branch 'provision_indexing' 2020-06-25 12:22:41 +02:00
Claudio Atzori e62333192c WIP: prepare relation job 2020-06-25 12:22:18 +02:00
Claudio Atzori 6933ec11fb WIP: prepare relation job 2020-06-25 11:04:12 +02:00
Sandro La Bruzzo a6c0faac70 added test to verify secondary sorting 2020-06-25 10:48:15 +02:00
Claudio Atzori 69b0391708 WIP: prepare relation job 2020-06-25 10:19:56 +02:00
Michele Artini abcbebcbb4 fixed generation of ids 2020-06-25 09:50:46 +02:00
Michele Artini 77d2a1b1c4 params to choose sql queries for beta or production 2020-06-25 09:28:13 +02:00
Claudio Atzori 46e76affeb WIP: prepare relation job 2020-06-24 19:01:15 +02:00
Claudio Atzori 0e723d378b added default from vocab for missing instance.refereed; remove spurious prefixes from orcid values; WIP: prepare relation job 2020-06-24 18:34:42 +02:00
Enrico Ottonello fcbb4c1489 parser of orcid publication data from xml original dump 2020-06-24 16:29:32 +02:00
Michele Artini 202f6e62ff Splitted join wf 2020-06-24 15:47:06 +02:00
Sandro La Bruzzo 96689a8994 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-24 14:06:50 +02:00
Sandro La Bruzzo 46631a4421 updated mapping scholexplorer to OAF 2020-06-24 14:06:38 +02:00
Michele Artini e53dd62e87 minot changes 2020-06-24 09:24:45 +02:00
Michele Artini 8b9933b934 refactoring aggregators 2020-06-24 08:57:13 +02:00
Miriam Baglioni 3e5570de7a - 2020-06-23 15:44:54 +02:00
Michele Artini d13e3d3f68 fixed paths 2020-06-23 11:01:42 +02:00
Michele Artini 8386c6f90d filter of valid resultResult relations 2020-06-23 10:24:15 +02:00
Michele Artini 38bb45d0b6 test osf:refereed 2020-06-23 10:14:39 +02:00
Michele Artini c3286f4c37 fixed relType 2020-06-23 09:32:32 +02:00
Miriam Baglioni 507f7a94a8 added one of the main zenodo communities to the tagging conf for testing purposes 2020-06-23 08:45:27 +02:00
Michele Artini af2f7705fc partial refactoring of some joins 2020-06-23 08:37:35 +02:00
Miriam Baglioni af1d40351b changed XQuery to add also the main Zenodo community among the communities associated to the openaire community 2020-06-22 19:20:54 +02:00
Miriam Baglioni e4b21be004 - 2020-06-22 17:31:50 +02:00
Miriam Baglioni afa19b0c84 changed the way to PUT the files to the rest API 2020-06-22 17:20:07 +02:00
Miriam Baglioni 250fd1c854 merge branch with fork master 2020-06-22 16:25:48 +02:00
Claudio Atzori 8a3bc7c183 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-22 14:12:33 +02:00
Claudio Atzori e162ba5075 added dnet workflows to orchestrate the execution of graph2hive, updateSolr and updateStats oozie wfs 2020-06-22 14:12:28 +02:00
Michele Artini 3ce20c198e reformatting 2020-06-22 12:14:25 +02:00
Michele Artini ed787398b3 refactoring wf 2020-06-22 11:45:14 +02:00
Claudio Atzori 9cd27183b6 [maven-release-plugin] prepare for next development iteration 2020-06-22 11:27:44 +02:00
Claudio Atzori 1e3dab0631 [maven-release-plugin] prepare release dhp-1.2.3 2020-06-22 11:27:39 +02:00
Miriam Baglioni df80ae5c1b merge branch with fork master 2020-06-22 10:51:23 +02:00
Miriam Baglioni e8f914f8b3 - 2020-06-22 10:50:41 +02:00
Miriam Baglioni edeb862476 excluded dependency in module that generates conflict 2020-06-22 10:49:56 +02:00
Miriam Baglioni 185facb8e5 change the deprecated DefaultHttpClient with the CLoseableHttpClient 2020-06-22 10:49:10 +02:00
Claudio Atzori 961a0d0b49 [actionset promotion] log debugging info in case of error in the action payload extraction or parsing the data 2020-06-22 10:20:45 +02:00
Claudio Atzori 5e8b922962 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-22 09:50:47 +02:00
Claudio Atzori 7d416f08d8 graph cleaning workflow: set hostedby to unknown repository when defined as NULL 2020-06-22 09:50:43 +02:00
Michele Artini 16c7a18435 refactoring 2020-06-22 08:51:31 +02:00
Miriam Baglioni 669a509430 - 2020-06-19 17:39:46 +02:00
Michele Artini f9fc64ffaf âÃMerge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-19 15:24:43 +02:00
Michele Artini d88fe0ac84 join methods 2020-06-19 15:24:30 +02:00
Sandro La Bruzzo 464eeeec87 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-19 15:11:53 +02:00
Sandro La Bruzzo 1681de672d updated mapping scholexplorer to OAF 2020-06-19 15:11:46 +02:00
Michele Artini 4822747313 some fixes 2020-06-19 13:53:56 +02:00
Michele Artini 834f139e6e fixed some NPE 2020-06-19 12:33:29 +02:00
Claudio Atzori d0ac7514b2 cleaning workflow to include cleaning of default values 2020-06-18 19:37:25 +02:00
Miriam Baglioni 44a12d244f - 2020-06-18 18:38:54 +02:00
Michele Artini 52f62d5d8c events 2020-06-18 14:49:13 +02:00
Miriam Baglioni fb80353018 - 2020-06-18 14:21:36 +02:00
Michele Artini 61634fbfe0 removed kryo encoding 2020-06-18 14:09:58 +02:00
Michele Artini 8d2b199dd2 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-18 13:15:34 +02:00
Michele Artini e659b02e6b some wf fixing 2020-06-18 13:15:13 +02:00
Michele Artini 9a847b4557 some wf fixing 2020-06-18 13:14:10 +02:00
Miriam Baglioni 65bf312360 merge branch with fork master 2020-06-18 11:35:27 +02:00
Miriam Baglioni 3953f56bd3 added dependency to pom 2020-06-18 11:34:47 +02:00
Miriam Baglioni a118b66858 - 2020-06-18 11:34:30 +02:00
Miriam Baglioni f9578312b5 - 2020-06-18 11:34:15 +02:00
Miriam Baglioni 8b145e6aba - 2020-06-18 11:25:28 +02:00
Miriam Baglioni e8b3e972f2 changed the input params and the workflow definition to tackle the Result as all result product produced 2020-06-18 11:25:05 +02:00
Miriam Baglioni 3233b01089 changes due to adding all the result type under Result 2020-06-18 11:22:58 +02:00
Miriam Baglioni 5c8533d1a1 changed in the testing classes 2020-06-18 11:20:08 +02:00
Miriam Baglioni bc8611a95a added new resources for testing 2020-06-18 11:19:20 +02:00
Sandro La Bruzzo 9bf67f5de1 resolved conflicts 2020-06-17 09:15:43 +02:00
Sandro La Bruzzo 1d4275acc4 implemented first version of exportation of Scholexplorer into ActionSet 2020-06-17 09:10:38 +02:00
miconis 5233b15265 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-16 18:31:19 +02:00
miconis 11b77b9f4e json dumps for entity merge test modified to fit the new model. title merge adjusted to fix the error 2020-06-16 18:31:11 +02:00
Claudio Atzori 64f02de5d3 updated workflow definition to include the cleaning step 2020-06-16 17:48:51 +02:00
Claudio Atzori 306669209f code formatting 2020-06-16 16:54:44 +02:00
Claudio Atzori 1bc1d15eaf stubbing for mock datasource.identities must be typed as array 2020-06-16 16:54:28 +02:00
Claudio Atzori 631fef12a7 Merge branch 'master' into dhp_oaf_model 2020-06-16 16:11:19 +02:00
Michele Artini 9e2c23e391 partial refactoring 2020-06-16 15:55:42 +02:00
Michele Artini 113c9b1de0 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-16 15:53:39 +02:00
Michele Artini 76ea7607f7 partial refactoring 2020-06-16 15:53:13 +02:00
Claudio Atzori 603b1bd0bb Merge branch 'master' into dhp_oaf_model 2020-06-16 15:43:59 +02:00
Claudio Atzori 5441f01586 Merge pull request 'missing landingPage urls in instances' (#22) from instances-with-landing-page into master 
Looks good, thanks!
 2020-06-16 15:32:44 +02:00
Claudio Atzori 89859111ee Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-16 15:28:29 +02:00
Claudio Atzori 4ec262db53 included externalreference(s) in the result view on the Hive graph DB 2020-06-16 15:28:20 +02:00
Michele Artini 8a4f84f8c0 refactoring 2020-06-16 12:34:13 +02:00
Claudio Atzori 2a4f65795f WIP: graph cleaner implementation 2020-06-15 18:32:24 +02:00
Claudio Atzori c15c8c0ad0 map datasource identities (including piwik ids) as original IDs 2020-06-15 16:07:30 +02:00
Miriam Baglioni 9dd3ef22c5 merge branch with fork master 2020-06-15 11:23:26 +02:00
Miriam Baglioni 68cf0fd03f test input 2020-06-15 11:14:42 +02:00
Miriam Baglioni 0467145ae3 test for graph dump 2020-06-15 11:13:51 +02:00
Miriam Baglioni e43eedb5b0 added resources and workflow for dump of community products 2020-06-15 11:13:21 +02:00
Miriam Baglioni f96ca900e1 fixed issues while running on cluster 2020-06-15 11:12:14 +02:00
Miriam Baglioni 20b9e67728 added new class funder 2020-06-15 11:06:18 +02:00
Claudio Atzori 0d52816244 WIP: graph cleaner implementation 2020-06-13 13:06:04 +02:00
Claudio Atzori bed65a1be6 WIP: graph cleaner implementation 2020-06-12 18:25:47 +02:00
Claudio Atzori c4d9f1837f [maven-release-plugin] prepare for next development iteration 2020-06-12 12:21:08 +02:00
Claudio Atzori f0746a7605 [maven-release-plugin] prepare release dhp-1.2.2 2020-06-12 12:21:03 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 4bcad1c9c3 Merge branch 'graph_cleaning' 2020-06-12 11:40:25 +02:00
Claudio Atzori cdb1956fe9 WIP: graph cleaner implementation 2020-06-12 11:36:59 +02:00
Alessia Bardi b347499745 do not use deprecated subreltype 2020-06-12 10:58:02 +02:00
Claudio Atzori 97b1c4057c WIP: graph cleaner implementation 2020-06-12 10:45:18 +02:00
Claudio Atzori ba8a024af9 avoid NPEs merging titles 2020-06-12 10:45:11 +02:00
Michele Artini 30ea1bda88 oozie workflow 2020-06-12 10:42:35 +02:00
Michele Artini c22cb5a3c6 refactoring 2020-06-12 09:47:55 +02:00
Michele Artini 472cf77639 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-11 14:30:47 +02:00
Michele Artini c6b5bb3f17 orcid events 2020-06-11 14:30:24 +02:00
Michele Artini c2e1b66e83 Revert "orcid events" 
This reverts commit 48959e9a17.
 2020-06-11 14:28:03 +02:00
Michele Artini 48959e9a17 orcid events 2020-06-11 14:24:02 +02:00
Miriam Baglioni e145972962 - 2020-06-11 13:08:39 +02:00
Miriam Baglioni a01800224c - 2020-06-11 13:02:04 +02:00
Miriam Baglioni 356dd582a3 map construction moved in class 2020-06-11 12:59:22 +02:00
Alessia Bardi e79943965b Fixes #5604: field oamandatepublications in XML 2020-06-11 12:49:31 +02:00
Michele Artini a41e0cb648 missing landingPage urls in instances 2020-06-11 12:28:34 +02:00
Michele Artini 04fdcacd83 results with all joined entities 2020-06-11 11:25:18 +02:00
Michele Artini 99f88e1cb8 fixed generation entities from claims 2020-06-11 10:51:57 +02:00
Miriam Baglioni db27663750 - 2020-06-11 10:49:01 +02:00
Miriam Baglioni bb9f21d0e7 job test for class producing first step of results dump 2020-06-11 10:20:05 +02:00
Claudio Atzori d1d92c4d8c fixed integration of claims in the graph 2020-06-11 10:12:00 +02:00
Claudio Atzori 953da4a427 Merge branch 'master' into graph_cleaning 2020-06-10 21:36:56 +02:00
Claudio Atzori f1bce64391 WIP: graph cleaner implementation 2020-06-10 21:36:31 +02:00
Claudio Atzori 67c7b31ba6 Merge branch 'master' into graph_cleaning 2020-06-10 15:00:35 +02:00
Claudio Atzori 3ebf81d2b0 Merge pull request 'oaf-store-interpretation' (#21) from oaf-store-interpretation into master 
Looks good, thanks Michele!
 2020-06-10 14:58:09 +02:00
Michele Artini 5869cb76b3 reformatting 2020-06-10 12:11:16 +02:00
Michele Artini c08e66e01e fixed a workflow parameter 2020-06-10 10:11:56 +02:00
Michele Artini 7177a32d75 import of invisible stores 2020-06-10 10:04:00 +02:00
Claudio Atzori ce12f236bb disabled test, need to need to update the joined_entity.json file 2020-06-09 20:07:36 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Alessia Bardi 4551c1082f mapping csv for orcid 2020-06-09 18:08:47 +02:00
Alessia Bardi 2d3f7d1eb4 fixed log classes to make the ORCID test run 2020-06-09 18:07:14 +02:00
Alessia Bardi a3a6755d58 mapping csv for Unpaywall 2020-06-09 17:45:44 +02:00
Claudio Atzori d9f33582c5 WIP: graph cleaner implementation 2020-06-09 17:20:40 +02:00
Alessia Bardi f3b033cf09 added csv line for funders from Crossref 2020-06-09 17:08:26 +02:00
Alessia Bardi 79969d78b9 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-09 17:05:39 +02:00
Alessia Bardi fc4d220964 updated function name for SNSF 2020-06-09 17:05:31 +02:00
Michele Artini baaa55f4a3 use of pace to calculate trusts 2020-06-09 16:01:31 +02:00
Alessia Bardi 33b130ec43 Mapping instructions for MAG 2020-06-09 15:57:15 +02:00
Miriam Baglioni 206abba48c merge branch with fork master 2020-06-09 15:41:14 +02:00
Miriam Baglioni a089db18f1 workflow and parameters to exucute the dump 2020-06-09 15:39:38 +02:00
Miriam Baglioni 6bbe27587f new classes to execute the dump for products associated to community, enrich each result with project information and assign the result to each community it belongs to 2020-06-09 15:39:03 +02:00
Miriam Baglioni 5121cbaf6a new classes for external dump. Only classes functional to dump products 2020-06-09 15:37:46 +02:00
Alessia Bardi d6de406e11 fixed classid for subjects 2020-06-09 14:43:34 +02:00
Alessia Bardi f072125152 map volume and issue in journal information from MAG 2020-06-09 14:32:10 +02:00
Alessia Bardi b7cb1163ea identifiers always start with 50 2020-06-09 10:39:11 +02:00
Alessia Bardi 181f52b9bc Added mapping table for Crossref 2020-06-08 19:33:47 +02:00
Alessia Bardi 9fd25887f7 Result identifiers all start with 50| 2020-06-08 19:32:24 +02:00
Alessia Bardi 16cb073b15 set the instance datepfacceptance with the Crossref createdDate in case the issuedDate is blank 2020-06-08 19:06:03 +02:00
Michele Artini bb659d870c join simrels 2020-06-08 16:29:01 +02:00
Michele Artini 81e85465d8 join simrels 2020-06-08 16:26:16 +02:00
Claudio Atzori 3d871c6651 Merge branch 'master' into graph_cleaning 2020-06-08 15:23:24 +02:00
Claudio Atzori 25a093b1a4 integrated changes from master 2020-06-08 15:04:00 +02:00
Sandro La Bruzzo e34e7d6728 merge DOIBoost 2020-06-08 08:32:22 +02:00
Sandro La Bruzzo e46e2a4776 Merge remote-tracking branch 'origin/master' into doiboost 2020-06-08 08:17:14 +02:00
Spyros Zoupanos 3576dd186b Adding hive timeout as workflow parameter 2020-06-05 22:29:54 +03:00
Claudio Atzori b2349659cf WIP: graph property fixing implementation 2020-06-05 18:37:38 +02:00
Michele Artini a73973a74b partial implemantation of broker events generation 2020-06-05 11:43:00 +02:00
Michele Artini 7e82996e7c partial implemantation of broker events generation 2020-06-04 17:10:43 +02:00
Sandro La Bruzzo b57e8ba374 Merge remote-tracking branch 'origin/master' into doiboost 2020-06-04 14:39:41 +02:00
Sandro La Bruzzo 7ac1ba2e35 improvement DOIBoost 2020-06-04 14:39:20 +02:00
Michele Artini 97177d7f7b partial refactoring 2020-06-04 10:26:34 +02:00
Sandro La Bruzzo 13815d5d13 improvement DOIBoost 2020-06-01 17:52:12 +02:00
Claudio Atzori 05f269a1c0 kryo based parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-06-01 00:32:42 +02:00
Claudio Atzori 5e23fb3a74 code formatting 2020-05-30 10:52:56 +02:00
Claudio Atzori 54ca8ed6c3 uniformed param name (isLookupUrl), Vocab model classes defined as Serializable 2020-05-29 18:17:30 +02:00
Claudio Atzori 1577bd5b8b added IsLookupUrl to the raw_db workflow parameters 2020-05-29 16:18:16 +02:00
Claudio Atzori 91d78b825b Merge pull request 'import from db using is vocabularies' (#17) from result_pids into master 
Looks good, thanks Michele!
 2020-05-29 16:02:40 +02:00
Michele Artini adb798faa5 import from db using is vocabularies 2020-05-29 12:03:51 +02:00
Claudio Atzori 6f5f498c78 restored common properties driving executor-cores and executor-memory in join_organization_relations wf node 2020-05-29 11:22:00 +02:00
Claudio Atzori b2f9564f13 WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-05-29 10:58:15 +02:00
Miriam Baglioni dfa4997a4f removed commented code 2020-05-29 10:45:18 +02:00
Miriam Baglioni 6f1eea28b6 changed message in log 2020-05-29 10:41:39 +02:00
Sandro La Bruzzo b87b3ddb6b changed mapping ORCIDToOAF 2020-05-29 09:32:04 +02:00
Miriam Baglioni 8b6e886fb6 added new resource for testing 2020-05-28 23:54:31 +02:00
Miriam Baglioni 6989fb9c8a changed the project test according to the newly introduced join with the db project codes 2020-05-28 23:53:24 +02:00
Miriam Baglioni 782984d8e5 added needed parameter 2020-05-28 23:52:41 +02:00
Miriam Baglioni 01f7876595 fix issue with flatMap - the return type must not be null 2020-05-28 23:50:32 +02:00
Claudio Atzori a57965a3ea limiting the dimensions of outliers 2020-05-28 17:36:37 +02:00
Miriam Baglioni 773735f870 added the path to the file containing the projects code from the db 2020-05-28 17:30:45 +02:00
Miriam Baglioni 6a15067a64 added one step in the workflow 2020-05-28 17:30:09 +02:00
Miriam Baglioni 5309a99a70 modified the PrepareProjects to consider those in the db 2020-05-28 17:29:53 +02:00
Miriam Baglioni b737ed8236 added part to read projects from the openaire db to filter out those in the csv file that are not in the db 2020-05-28 17:29:21 +02:00
Claudio Atzori 821be1f8b6 experimental implementation of custom aggregation using kryo encoders 2020-05-28 13:53:13 +02:00
Claudio Atzori 83504ecace limiting the maximum number of authors allowed in XML records to MAX_AUTHORS = 200; authors with ORCID can exceed that limit 2020-05-28 13:52:30 +02:00
Claudio Atzori ef11593068 JoinedEntity.links defined as empty list by default 2020-05-28 13:50:44 +02:00
Claudio Atzori 5dea155a87 increased number of partitions produced by the join_all_entities phase as well as spark.sql.shuffle.partitions in adjancency_lists phase 2020-05-28 13:49:59 +02:00
Miriam Baglioni 35b7279147 changed test because data are saved as SequenceFile now, and because of the group by the umber of produced update decrease 2020-05-28 10:26:12 +02:00
Miriam Baglioni 37c155b86a merge branch with fork master 2020-05-28 10:09:51 +02:00
Miriam Baglioni df44db686a refactoring 2020-05-28 10:07:00 +02:00
Miriam Baglioni 87b07f4af8 removed unused variables 2020-05-28 10:05:43 +02:00
Miriam Baglioni 1060977272 added fs actions to remove and the create the workingDir 2020-05-28 10:04:36 +02:00
Miriam Baglioni 96d1a3c431 deleted the file were to store the csv files 2020-05-28 10:04:10 +02:00
Miriam Baglioni 669c05c771 added groupBy before creating Actions 2020-05-28 10:00:45 +02:00
Sandro La Bruzzo 02f90eeb07 Merge remote-tracking branch 'origin/master' into doiboost 2020-05-28 09:58:32 +02:00
Sandro La Bruzzo 7d29b61c62 code refactor 2020-05-28 09:57:46 +02:00
Claudio Atzori fdd54bad1c code formatting 2020-05-27 19:31:54 +02:00
Miriam Baglioni 1855453434 changed the outputdir of the last step 2020-05-27 17:59:36 +02:00
Claudio Atzori b9b1bc9967 Merge branch 'master' into provision_indexing 2020-05-27 12:55:20 +02:00
Claudio Atzori aac1515b58 Merge pull request 'result_pids without conflicts ???' (#16) from result_pids into master 
Looks good, thanks Michele
 2020-05-27 12:54:52 +02:00
Michele Artini f5ce7d76e1 resolve conflicts 2020-05-27 12:49:17 +02:00
Claudio Atzori cfd753217c repartition the join_entities in 24k files 2020-05-27 12:44:01 +02:00
Claudio Atzori 2f1a623d09 sync from master branch 2020-05-27 12:39:58 +02:00
Claudio Atzori 9e4ec1543b updated test 2020-05-27 12:38:42 +02:00
Claudio Atzori 8047d16dd9 added RDD based adjacency list creation procedure 2020-05-27 12:38:12 +02:00
Claudio Atzori f057dcdf65 limit the max number of externalreferences to MAX_EXTERNAL_ENTITIES 2020-05-27 12:37:33 +02:00
Michele Artini b81f2741d2 xquery 2020-05-27 12:10:20 +02:00
Michele Artini a25598140a result pids (new xpaths + IS vocabularies) 2020-05-27 12:10:20 +02:00
Michele Artini 7a7272d9ec result pids (new xpaths + IS vocabularies) 2020-05-27 12:10:20 +02:00
Michele Artini 3ceb2d2853 match terms with vocabularies 2020-05-27 11:34:13 +02:00
Claudio Atzori 4e36d689dd fixed XML serialization for children sub-elements (duplicates & externalreferences) 2020-05-26 18:30:40 +02:00
Miriam Baglioni 92e3a52e91 merge branch with fork master 2020-05-26 15:57:51 +02:00
Michele Artini c15d997925 xquery 2020-05-26 13:13:17 +02:00
Michele Artini c6af36496a result pids (new xpaths + IS vocabularies) 2020-05-26 13:11:09 +02:00
Michele Artini 093f1aff03 result pids (new xpaths + IS vocabularies) 2020-05-26 13:06:55 +02:00
Claudio Atzori b8e541a454 fixing repeated organization.websiteurl in organization entities (#5645) as well as project.ecinternationalorganizationeurinterests 2020-05-26 10:30:09 +02:00
Claudio Atzori 55595d7235 HACK: patch NULL values with defaults found in result.datainfo.deletedbyinference and result.context 2020-05-26 10:28:35 +02:00
Claudio Atzori 7b288a94cb code formatting 2020-05-26 09:54:13 +02:00
Miriam Baglioni 54d869e618 merge upstream 2020-05-26 09:22:04 +02:00
Miriam Baglioni eea07f4c42 refactoring 2020-05-26 09:21:49 +02:00
Sandro La Bruzzo 79c26382da Merge remote-tracking branch 'origin/master' into doiboost 2020-05-26 09:15:50 +02:00
Sandro La Bruzzo 25f52e19a4 implemented generation of ActionSet 2020-05-26 09:15:33 +02:00
Michele Artini d6aada4957 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-26 08:44:31 +02:00
Michele Artini b1546605e3 updated version of a dependency 2020-05-26 08:44:15 +02:00
Claudio Atzori 7582532e73 [maven-release-plugin] prepare for next development iteration 2020-05-25 19:48:18 +02:00
Claudio Atzori 01c2e93395 [maven-release-plugin] prepare release dhp-1.2.1 2020-05-25 19:48:14 +02:00
miconis da1e5cf557 implementation of the result title merge. main title with higher trust, distinct between the others 2020-05-25 18:02:57 +02:00
Miriam Baglioni d3d36647d2 merge upstream 2020-05-25 10:38:22 +02:00
Miriam Baglioni 74215f6d9f refactoring 2020-05-25 10:38:16 +02:00
Miriam Baglioni dbde2d243a changed due to move of PacePerson from dhp-graph-mapper to dhp-common 2020-05-25 10:35:39 +02:00
Miriam Baglioni f754c424bd changed logic to compute only onece PacePerson for each Author to be enriched 2020-05-25 10:35:02 +02:00
Miriam Baglioni 8f51af4e9b added PacePerson to get name surname for authors having only fullname set 2020-05-25 10:34:30 +02:00
Miriam Baglioni b258f99ece fix for issue that duplicated result 2020-05-25 10:26:48 +02:00
Miriam Baglioni 8f6ce970f9 moved PacePerson to dhp-common to avoid conflict in dependency with graph-mapper 2020-05-25 10:25:55 +02:00
Claudio Atzori de108f54d6 code formatting 2020-05-23 10:21:19 +02:00
Claudio Atzori 6b56cae57d added mapping for bestaccessrights 2020-05-23 09:57:39 +02:00
Claudio Atzori 7181807e64 code formatting 2020-05-23 09:51:48 +02:00
Sandro La Bruzzo 2408083566 implemented filtering step 2020-05-23 08:46:49 +02:00
Sandro La Bruzzo 244f6e50cf Merge remote-tracking branch 'origin/master' into doiboost 2020-05-22 20:52:15 +02:00
Sandro La Bruzzo 147dd389bf minor fix 2020-05-22 20:51:42 +02:00
Miriam Baglioni 0d1ec1913f added fix to avoid duplication of results 2020-05-22 18:42:25 +02:00
miconis 5d7ac78c41 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-22 17:25:08 +02:00
miconis 0fd0c7d725 reimplementation of the sim between two authors. now it takes into account both name and surname. threshold incremented to 1.0 if the name is too short 2020-05-22 17:24:57 +02:00
Michele Artini eb606dc1e2 partial implementation of events with rels 2020-05-22 17:17:41 +02:00
Miriam Baglioni 29066a6b46 applied code cleanup 2020-05-22 15:38:50 +02:00
Miriam Baglioni 8610ad5142 added groupby id to fix multiple result with same id at join step 2020-05-22 15:32:55 +02:00
Miriam Baglioni 1e44703e3e merge upstream 2020-05-22 15:30:07 +02:00
Miriam Baglioni ac8025f469 - 2020-05-22 15:29:41 +02:00
Miriam Baglioni 50ad83b97f - 2020-05-22 15:27:19 +02:00
Miriam Baglioni 473c6d3a23 produces AtomicActions instead of Projects 2020-05-22 15:26:57 +02:00
Sandro La Bruzzo 72278b9375 Merge remote-tracking branch 'origin/master' into doiboost 2020-05-22 15:17:13 +02:00
Sandro La Bruzzo 22936d0877 Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost 2020-05-22 15:15:17 +02:00
Sandro La Bruzzo 9fbb221457 completed mapping of UnpayWall and ORCID 2020-05-22 15:15:09 +02:00
Miriam Baglioni 70389b0a30 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-22 13:53:23 +02:00
Miriam Baglioni 4308f31165 added fix to make test run 2020-05-22 13:13:01 +02:00
Claudio Atzori 946598cfba Merge branch 'master' into provision_indexing 2020-05-22 12:35:41 +02:00
Claudio Atzori 3cf2796ac6 code formatting 2020-05-22 12:34:00 +02:00
Michele Artini dc4621b3cb filter ORCID e MAG identifiers 2020-05-22 12:25:01 +02:00
Michele Artini 9f2d0f1b08 filter ORCID e MAG identifiers 2020-05-22 11:00:27 +02:00
Michele Artini 9de71e54a8 filter ORCID e MAG identifiers 2020-05-22 10:47:39 +02:00
Michele Artini c5f7e17348 author fullnames 2020-05-22 10:08:02 +02:00
Claudio Atzori ad40470040 Merge branch 'master' into provision_indexing 2020-05-22 08:51:22 +02:00
Claudio Atzori 925d933204 making XmlRecordFactory immune to graph encoding changes (mostly to avoid NPEs) 2020-05-22 08:50:44 +02:00
Claudio Atzori b33dd58be4 replaced parameter 'reuseRecords' with 'resumeFrom', allowing to restart the provision workflow execution from any step, useful for manual submissions or debugging 2020-05-22 08:50:06 +02:00
Michele Artini c7ca3cf35b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-21 16:48:20 +02:00
Michele Artini 3e34517479 partial implementation of events with rels 2020-05-21 16:47:53 +02:00
Miriam Baglioni eae12a6586 Merge branch 'master' into dhp_oaf_model 2020-05-21 16:31:22 +02:00
Miriam Baglioni 6750075fbd merge upstream 2020-05-21 16:31:09 +02:00
Miriam Baglioni 4589c428b1 generate action sets and saves them in the hdfs path for the actions sets 2020-05-21 16:30:39 +02:00
miconis 8b35e0e7f0 reimplementation of the author merging in deduprecord creation. implementation of the test class. minor changes 2020-05-21 12:02:44 +02:00
miconis 8bbd1d0501 reimplementation of the author merging in deduprecord creation. implementation of the test class. 2020-05-21 11:52:14 +02:00
Michele Artini e43d4d7778 added a coalesce in sql query 2020-05-21 11:08:07 +02:00
Claudio Atzori dbfb9c19fe minor changes 2020-05-21 10:00:14 +02:00
Michele Artini b3bcbb3129 resolve name of organization countries 2020-05-21 08:41:32 +02:00
Enrico Ottonello 1109d3b3fc Merge branch 'doiboost' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doiboost 2020-05-21 00:41:27 +02:00
Enrico Ottonello 869a53040e save to text file format 2020-05-21 00:41:21 +02:00
Sandro La Bruzzo 5818abaab4 fixed Crossref Mapping 2020-05-20 17:05:46 +02:00
Claudio Atzori da4267d0fe Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-20 14:58:22 +02:00
Claudio Atzori d7d2a0637f added extra parameters to the provision indexing workflow 2020-05-20 14:55:38 +02:00
Miriam Baglioni 055eec5a77 added resource for prepare project test 2020-05-20 13:54:10 +02:00
Miriam Baglioni 9079bc1f61 - 2020-05-20 13:53:32 +02:00
Miriam Baglioni 67ba4fde57 added test for prepare projects step 2020-05-20 13:53:08 +02:00
Miriam Baglioni 5e0e554000 Merge branch 'master' into dhp_oaf_model 2020-05-20 10:57:30 +02:00
Miriam Baglioni 76f3f73caa merge upstream 2020-05-20 10:31:40 +02:00
Miriam Baglioni 3c0eb12d3e removed the not zipped files 2020-05-20 10:31:05 +02:00
Miriam Baglioni c0d9e02340 zipped test resources that are too big 2020-05-20 10:30:25 +02:00
Miriam Baglioni 5e9c9fa87c tests 2020-05-20 10:29:57 +02:00
Miriam Baglioni faed7521bf added resources for testing 2020-05-20 10:29:29 +02:00
Miriam Baglioni 75491482de added a new preparation step to replicate each project for the programme it is associated to 2020-05-20 10:28:56 +02:00
Miriam Baglioni eb0e47ba53 parameters for h2020 programme 2020-05-20 10:26:44 +02:00
Sandro La Bruzzo b771d67e9d next step of MAG conversion implemented 2020-05-20 08:14:03 +02:00
Miriam Baglioni 08218d2f3f new workflow with added steps 2020-05-19 18:44:25 +02:00
Miriam Baglioni 457293ccc0 test for the variuos steps of project update with programme 2020-05-19 18:43:42 +02:00
Miriam Baglioni 9447d78ef3 added preparation classes 2020-05-19 18:42:50 +02:00
Michele Artini 85ca5622d4 partial implementation of generation of simple events 2020-05-19 16:17:35 +02:00
Claudio Atzori 0bdfbb0a57 reintroduced RDD based relation cut off procedure 2020-05-19 15:02:21 +02:00
Enrico Ottonello 934ad570e0 joined summaries and activities dataset 2020-05-19 12:57:21 +02:00
Enrico Ottonello ca722d4d18 merged 2020-05-19 09:43:12 +02:00
Enrico Ottonello 7362bc3e9d workflow to generate seq(doi,AuthorList) 2020-05-19 09:34:44 +02:00
Sandro La Bruzzo 8c95b50f26 Merge remote-tracking branch 'origin/master' into doiboost 2020-05-19 09:25:04 +02:00
Sandro La Bruzzo 486e850bcc next step of MAG conversion implemented 2020-05-19 09:24:45 +02:00
Enrico Ottonello d4e9075f22 Merge branch 'doiboost' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doiboost 2020-05-18 19:51:36 +02:00
Enrico Ottonello fc80e8c7de added accumulator; last modified date of the record is added to saved data; lambda file is partitioned into 20 parts before starting downloading 2020-05-18 19:51:29 +02:00
Claudio Atzori f3bc8aed31 lifted memory requirements for country propagation wf 2020-05-18 15:29:10 +02:00
Miriam Baglioni b71fbb68b1 removed the removeOutputDir command from code. Reltions are written in Append. The erase of the output dir ment to remove all the relations computed in the prevoius steps 2020-05-18 13:57:20 +02:00
Miriam Baglioni 629af7cb79 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-18 13:07:36 +02:00
Miriam Baglioni f0f14caf99 removed script files for shell actions not performed 2020-05-18 13:06:16 +02:00
Miriam Baglioni 23bbac7d7c - 2020-05-18 13:05:03 +02:00
Miriam Baglioni 4f1ff7ba73 added dependency to org.apache.commons common-csv 2020-05-18 13:04:39 +02:00
Miriam Baglioni abc45f2708 added dnet-45 HttpConnector and related Classes, produced the POJO for projects and programme 2020-05-18 13:04:06 +02:00
Claudio Atzori ef9a9a9f1a remove the outout path when starting 2020-05-15 22:34:19 +02:00
Enrico Ottonello 0b29bb7e3b spark job to download orcid record modified after a fixed date 2020-05-15 19:49:26 +02:00
Miriam Baglioni 5a648016ef parameters from the GetFile class 2020-05-15 18:18:50 +02:00
Miriam Baglioni 83c262a483 workflow to download the files 2020-05-15 18:18:31 +02:00
Miriam Baglioni 22cb9e0da7 simple code to get file from URL 2020-05-15 18:18:01 +02:00
Claudio Atzori 7838f2c63f init the empty list for author pids mapped from OAF 2020-05-15 17:06:01 +02:00
Claudio Atzori 82b615ab33 NPE check 2020-05-15 16:04:46 +02:00
Miriam Baglioni e26a67c3eb merge with upstream 2020-05-15 15:53:05 +02:00
Claudio Atzori 7a89507ab1 code formatting 2020-05-15 15:16:54 +02:00
Miriam Baglioni 5ec8c49ad5 removed serialization points 2020-05-15 12:49:58 +02:00
Claudio Atzori 1d35836a58 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-15 12:26:31 +02:00
Claudio Atzori cfc8948717 fixed mapping OdfToGraph: pick the correct element to map author pids and author affiliations; extended mapping Oaf2Graph: added support for author pids 2020-05-15 12:26:16 +02:00
Michele Artini 2a4e68a292 events recognition 2020-05-15 12:25:37 +02:00
Claudio Atzori a832658296 code formatting 2020-05-15 10:21:09 +02:00
Claudio Atzori 50d6a2ad3c added output directory removal in the blacklist spark actions; included common global properties in blacklist's workflow.xml 2020-05-15 09:53:37 +02:00
Claudio Atzori 18f46e47b9 added relations to the graph2hive import workflow 2020-05-15 09:34:48 +02:00
Claudio Atzori 9d028ffe1c cleanup 2020-05-15 09:28:55 +02:00
Claudio Atzori fd62359538 cleanup 2020-05-15 09:28:15 +02:00
Claudio Atzori eb64335a54 parallel implementation for graph Hive importer 2020-05-15 09:05:26 +02:00
Miriam Baglioni 94571c9a51 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-14 18:29:55 +02:00
Miriam Baglioni f25db01664 changed in the constant from propagationconstants to modelconstants 2020-05-14 18:29:24 +02:00
Miriam Baglioni d05630d979 removed the constants added in ModelConstants 2020-05-14 18:22:50 +02:00
Claudio Atzori f044d09315 revised mapping: more accurate mapping for name/surname from datacite format; improved mapping of null values 2020-05-14 15:07:24 +02:00
Miriam Baglioni e7eb4f377e Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-14 10:34:17 +02:00
Miriam Baglioni 8828458acf minor changes 2020-05-14 10:34:12 +02:00
Claudio Atzori ab37953332 added global properties in wf definitions to avoid repeating name-node and job-tracker in the (many) distcp actions; reintroduced output directory removal at the beginning of each spark action 2020-05-14 10:25:41 +02:00
Claudio Atzori 12bfa6702e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-13 17:01:17 +02:00
Claudio Atzori 5ecacad70a fixed default resource typing in Oaf/Odf mapping 2020-05-13 17:01:11 +02:00
Enrico Ottonello 12756f9d41 multithread (4 threads) test to feed elastic search 2020-05-13 16:11:40 +02:00
Michele Artini c0265213a0 partial implementation 2020-05-13 12:00:27 +02:00
Sandro La Bruzzo a92ee0f41e Merge remote-tracking branch 'origin/master' into doiboost 2020-05-13 10:38:13 +02:00
Sandro La Bruzzo d876f47d06 next step of MAG conversion implemented 2020-05-13 10:38:04 +02:00
Claudio Atzori 1ddd33de41 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-13 09:04:41 +02:00
Claudio Atzori 85f3c55992 fixed node names in blacklist workflow 2020-05-13 09:04:33 +02:00
Miriam Baglioni 43f127448d changed the package name from dhp-propagation to dhp-enrichment for the preparation phase of funding propagation 2020-05-12 18:24:26 +02:00
Enrico Ottonello 08040cef80 spark action to analyze orcid lambda file 2020-05-12 16:57:43 +02:00
Claudio Atzori ec0782e582 renamed jar containing the bulktagging and propagation workflows from dhp-[bulktagging|propagation] to dhp-enrichment; adjusted xml formatting 2020-05-12 15:49:28 +02:00
Miriam Baglioni 1547ca7e15 added blacklist step to the end of the provision wf 2020-05-12 12:17:27 +02:00
Miriam Baglioni 14979f299e changed the configuration factory 2020-05-12 11:28:38 +02:00
Miriam Baglioni f8aef6161a minor modification 2020-05-12 11:28:07 +02:00
Miriam Baglioni 7387f3449a changed the route to find the verb resolver classes 2020-05-12 11:27:38 +02:00
Miriam Baglioni 7687519f00 merged conflicts with upstream branch 2020-05-12 10:03:44 +02:00
Miriam Baglioni 8ffc050b8a fixed problem in communityconfigurationfactory test 2020-05-12 10:01:09 +02:00
Claudio Atzori 527e8169a8 adjusted paths pointing to test configurations, cleanup 2020-05-11 18:17:05 +02:00
Claudio Atzori f9a62ba63b added wf nodes to copy entities to the output path 2020-05-11 18:16:39 +02:00
Miriam Baglioni ad63effb4e removed deletion of working dir 2020-05-11 17:48:22 +02:00
Claudio Atzori c6b028f2af code formatting 2020-05-11 17:38:08 +02:00
Claudio Atzori 6d0b11252e bulktagging wfs moved into common dhp-enrichment module 2020-05-11 17:32:06 +02:00
Miriam Baglioni 50659011eb refactoring 2020-05-11 16:14:26 +02:00
Miriam Baglioni e883daf87e added the outputPath parameter and the reset path to remove the outputath directory 2020-05-11 16:10:24 +02:00
Miriam Baglioni 5ab3424c77 removed unused dependencies 2020-05-11 16:09:37 +02:00
Miriam Baglioni 6a3b081263 added the last step of blacklisteing 2020-05-11 16:09:20 +02:00
Enrico Ottonello 3b1a68cbf5 elastic search feed test 2020-05-11 14:53:52 +02:00
Enrico Ottonello f53e42bda7 merged 2020-05-11 14:49:28 +02:00
Enrico Ottonello 7990894454 different date format in lambda file parsing 2020-05-11 14:41:11 +02:00
Sandro La Bruzzo 0c6774e4da updated pom version 2020-05-11 14:35:14 +02:00
Miriam Baglioni bbc9b4f329 removed unused imports 2020-05-11 14:28:55 +02:00
Miriam Baglioni 757bae53ea removed unusefule serialization points 2020-05-11 14:28:37 +02:00
Miriam Baglioni b35d57a1ac added resources for test 2020-05-11 14:15:30 +02:00
Miriam Baglioni e563e65335 moved check from join to method 2020-05-11 14:11:44 +02:00
Sandro La Bruzzo b90609848b Merge remote-tracking branch 'origin/master' into doiboost 2020-05-11 14:08:31 +02:00
Sandro La Bruzzo 4062eafbdb merged from branch 2020-05-11 14:08:16 +02:00
Miriam Baglioni f5d785e096 used the DbClient moved in dhp-common 2020-05-11 13:59:42 +02:00
Miriam Baglioni 112b2cb3c3 added the test class 2020-05-11 13:58:58 +02:00
Miriam Baglioni 9a7ae523c9 update to version 1.2.1-SNAPSHOT 2020-05-11 13:57:47 +02:00
Miriam Baglioni 2abb84877d Merge branch 'master' into blacklist 2020-05-11 10:37:49 +02:00
Miriam Baglioni b0f0b24263 update to version 1.2.1-SNAPSHOT 2020-05-11 10:37:31 +02:00
Miriam Baglioni a7e91e23ba update to versione 1.2.1-SNAPSHOT 2020-05-11 10:34:30 +02:00
Miriam Baglioni bb59bdd60f merge upstream 2020-05-11 10:33:17 +02:00
Miriam Baglioni 5e3548add6 - 2020-05-11 10:33:08 +02:00
Miriam Baglioni dc8c8fa480 changed the version 2020-05-11 10:20:48 +02:00
Miriam Baglioni 871e079b45 merged with master 2020-05-11 10:20:00 +02:00
Claudio Atzori 60c40618d3 [maven-release-plugin] prepare for next development iteration 2020-05-11 10:17:14 +02:00
Claudio Atzori c267d958d5 [maven-release-plugin] prepare release dhp-1.2.0 2020-05-11 10:17:10 +02:00
Miriam Baglioni 622ba87ec2 changed the version 2020-05-11 10:10:36 +02:00
Miriam Baglioni 391b2399cc merge upstream 2020-05-11 10:08:51 +02:00
Claudio Atzori 42f1a2bf94 bumped project version to 1.2.0-SNAPSHOT 2020-05-11 10:05:57 +02:00
Sandro La Bruzzo 1412158a6f merged from branch 2020-05-11 09:45:50 +02:00
Miriam Baglioni 32301451ec merge upstream 2020-05-11 09:42:23 +02:00
Miriam Baglioni 7e66bc2527 fix a typo in the compression keyword and added some logging info in the spark job 2020-05-11 09:40:58 +02:00
Sandro La Bruzzo 1662f221f5 added test class 2020-05-11 09:39:11 +02:00
Sandro La Bruzzo 2b48a2c32c Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost 2020-05-11 09:38:36 +02:00
Sandro La Bruzzo 4cebca09d2 start implementing MAG mapping 2020-05-11 09:38:27 +02:00
Spyros Zoupanos ae0f535c73 Fixing hardcoded reference to main openAIRE graph db 2020-05-09 22:34:48 +03:00
Claudio Atzori fd519df616 new rels produced by dedup workflow must be unique 2020-05-08 19:00:38 +02:00
Claudio Atzori 0ccc864ad9 [maven-release-plugin] prepare for next development iteration 2020-05-08 17:01:31 +02:00
Claudio Atzori 6e47c724c6 [maven-release-plugin] prepare release dhp-1.1.7 2020-05-08 17:01:27 +02:00
Claudio Atzori 5b28bb4131 code formatting 2020-05-08 16:49:47 +02:00
Claudio Atzori 8fd1952f16 code formatting 2020-05-08 16:01:09 +02:00
miconis 3420998bb4 reltype set in mergerels 2020-05-08 15:43:30 +02:00
Enrico Ottonello b9d126dd1f formatting modified after commit 2020-05-08 14:54:37 +02:00
Enrico Ottonello 7e1c987370 Merge branch 'doiboost' of https://code-repo.d4science.org/D-Net/dnet-hadoop into doiboost 2020-05-08 14:49:50 +02:00
Enrico Ottonello 9d812788e4 added job to download from orcid the records modified after a fixed date, the info are taken from last_modified.csv on hdfs 2020-05-08 14:49:39 +02:00
Miriam Baglioni 9a29ab7508 got back to the readPath we have before 2020-05-08 13:08:56 +02:00
Miriam Baglioni 28556507e7 - 2020-05-08 12:54:52 +02:00
Claudio Atzori b2192fdcdc simplified reset_outputpath nodes across the workflows, applied common xml formatting 2020-05-08 12:33:31 +02:00
Miriam Baglioni 4c94231cad merge with master fork 2020-05-08 12:25:57 +02:00
Miriam Baglioni 9b4c0d4b3a - 2020-05-08 11:51:45 +02:00
Miriam Baglioni 53952707b6 modified test because of new step of data preparation. It now expects to find ResultCountrySet serialization nstead of DatasourceCountry 2020-05-08 11:49:19 +02:00
Claudio Atzori 62ea19f1d3 introduced mapping for ExternalReferences, made urls defined within an instance unique 2020-05-08 09:43:26 +02:00
Claudio Atzori 8c67073a07 force speculative execution to false 2020-05-08 09:42:21 +02:00
Miriam Baglioni d6b9de9f46 Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop 2020-05-07 18:22:59 +02:00
Miriam Baglioni f95d288681 fixed swithch of parameters 2020-05-07 18:22:32 +02:00
Claudio Atzori 166aafd936 heavy cleanup 2020-05-07 18:22:26 +02:00
Michele Artini ac0da5a7ee Partial implementation of broker events 2020-05-07 12:31:26 +02:00
Miriam Baglioni fb405275f7 merged with master 2020-05-07 11:48:21 +02:00
Miriam Baglioni e124278934 - 2020-05-07 11:47:11 +02:00
Claudio Atzori 5111671e62 celanup 2020-05-07 11:47:00 +02:00
Miriam Baglioni 9f8855991c changed Encorders.bean to Encoders.kryo 2020-05-07 11:44:35 +02:00
Miriam Baglioni 207b899d6d merged with upstream 2020-05-07 11:43:53 +02:00
Claudio Atzori 5b3f8a0e90 using Encoders.bean instead of kryo 2020-05-07 11:41:41 +02:00
Miriam Baglioni 182225becb Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop 2020-05-07 11:38:17 +02:00
Miriam Baglioni 5efae3acb9 new workflow for job3 2020-05-07 11:38:10 +02:00
Claudio Atzori 73243793b2 Dataset based implementation for SparkCountryPropagationJob3 2020-05-07 11:15:24 +02:00
Claudio Atzori 128c3bf1c8 restored Author bean with simple getter/setter, author pid addition moved into dedicated implementation SparkOrcidToResultFromSemRelJob3 2020-05-07 11:14:56 +02:00
Miriam Baglioni b2fec32c87 new workflow for job3 2020-05-07 10:01:57 +02:00
Miriam Baglioni 29bc8c44b1 changes in the construction of new country set 2020-05-07 10:01:34 +02:00
Miriam Baglioni 55e825acd4 chenged the test according to changes in SparkCOuntryPropagationJob2 2020-05-07 10:01:00 +02:00
Miriam Baglioni 16193cf0ba new workflow and parameter for country propagation 2020-05-07 09:59:58 +02:00
Miriam Baglioni 5a476c7a13 chenged the xquery for the cfhb table 2020-05-07 09:58:17 +02:00
Miriam Baglioni 42ad51577a new implementation with one more serialization step 2020-05-07 09:57:49 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Claudio Atzori fdfecc9578 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-05-06 11:28:01 +02:00
Claudio Atzori c79e2f5977 drop workingPath before starting the dedup workflow 2020-05-06 11:27:44 +02:00
Michele Artini 8f30a09d84 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-05 17:12:22 +02:00
Michele Artini ccc609f909 new module for the production of broker events 2020-05-05 17:09:00 +02:00
Miriam Baglioni dd2e698a72 added a sequentialization step on the spark job. Addedd new parameter 2020-05-05 17:03:43 +02:00
Claudio Atzori 0825321d0b improved unit tests in dhp-aggregation 2020-05-05 12:39:04 +02:00
Miriam Baglioni 252b219dd5 chanced the name of some properties 2020-05-05 10:03:32 +02:00
Claudio Atzori 4a8487165c using long param names in wf definition 2020-05-04 19:19:29 +02:00
Claudio Atzori a2fc37df5f adjusted parameters 2020-05-04 19:18:59 +02:00
Claudio Atzori f1b7e14036 code formatting 2020-05-04 19:18:34 +02:00
Miriam Baglioni 78578c3ccf fixed wrong trnasition name in workflow 2020-05-04 15:46:24 +02:00
Miriam Baglioni cc7d9b6b19 merge upstream 2020-05-04 13:59:09 +02:00
Miriam Baglioni 3957c815b9 changed the name of some parameters 2020-05-04 13:58:52 +02:00
Miriam Baglioni e218360f8a changed code for the mode of DbClient and also removed the dependency to graph-mapper 2020-05-04 12:26:17 +02:00
Miriam Baglioni 31ea05297d moved the DbClient to common and added needed dependency to pom 2020-05-04 12:22:28 +02:00
miconis 085cf173d7 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-05-04 12:08:20 +02:00
miconis 3df703f67d mergerels added to propagate relations 2020-05-04 12:08:12 +02:00
Claudio Atzori bac37b3973 fixed children expansion in XML records 2020-05-04 11:51:17 +02:00
Claudio Atzori 077ccd8743 stats wf properties cleanup 2020-05-04 11:41:46 +02:00
Miriam Baglioni b7dd400e51 added check if author.pid exists or is null 2020-05-01 15:09:02 +02:00
Miriam Baglioni dbf3ba051a minor 2020-04-30 20:22:07 +02:00
Miriam Baglioni 43053a286d workflow pom with added blacklist module 2020-04-30 18:30:21 +02:00
Miriam Baglioni 0631fe548a pom.xml 2020-04-30 18:29:46 +02:00
Miriam Baglioni 38ecfd5785 the wf with all the three steps for blacklisting relations 2020-04-30 18:28:46 +02:00
Miriam Baglioni 95433e1087 parameters for the preparation phase and blacklist phase 2020-04-30 18:28:13 +02:00
Miriam Baglioni 1070790c19 minor 2020-04-30 18:26:58 +02:00
Miriam Baglioni b9d56b3ced applies the actual removal of the relations 2020-04-30 18:26:25 +02:00
Miriam Baglioni d6d6ebeae5 preparation step: creates the subset of the merges relations 2020-04-30 18:25:33 +02:00
Miriam Baglioni 13f30664ea minor 2020-04-30 15:23:49 +02:00
Miriam Baglioni 276b95b7b3 add create file instruction 2020-04-30 15:05:17 +02:00
Miriam Baglioni 65a5d67b8b minor modifications 2020-04-30 14:45:27 +02:00
Miriam Baglioni 418595fec2 removed the saveGraph parameter 2020-04-30 14:45:00 +02:00
Miriam Baglioni ce8b1d0bc3 new workflow definition to be inserted in the provision pipeline 2020-04-30 14:38:54 +02:00
Miriam Baglioni 4b0bd91012 - 2020-04-30 12:45:28 +02:00
Miriam Baglioni 2349bfd8b8 changed the job test to remove the writeUpdate option 2020-04-30 11:43:33 +02:00
Sandro La Bruzzo 1e06bbaee8 fixed test 2020-04-30 11:38:58 +02:00
Miriam Baglioni 951517f9ec new input parameters and workflow definition to be used in the provision pipeline 2020-04-30 11:32:50 +02:00
Miriam Baglioni 026f297e49 removed the writeUpdate oprion 2020-04-30 11:31:59 +02:00
Sandro La Bruzzo b8e95295e2 merged from master 2020-04-30 11:27:59 +02:00
Miriam Baglioni c89fe762b1 modified relation datasource organization 2020-04-30 11:17:03 +02:00
Miriam Baglioni 3abb76ff7a merge with upstream 2020-04-30 11:15:54 +02:00
Michele Artini eb9bd42970 fixed a problem with journals 2020-04-30 11:06:05 +02:00
Miriam Baglioni 638a3c465b - 2020-04-30 11:05:17 +02:00
Michele Artini a0a6109bbc fixed a problem with journals 2020-04-30 11:03:46 +02:00
Miriam Baglioni 354f0162be changes in the blacklist and workflow definition 2020-04-30 10:26:50 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 77ac995770 cleaned up poms, added descriptions 2020-04-29 18:44:17 +02:00
Miriam Baglioni 3cffee74b9 merge with upstream 2020-04-29 18:25:29 +02:00
Miriam Baglioni 9ab46535e7 pom with the new blacklist module added 2020-04-29 18:17:15 +02:00
Miriam Baglioni 6a47e6191d read from blacklist and write the result as relations on hdfs 2020-04-29 18:16:01 +02:00
Miriam Baglioni 869f576273 added hash map for relationship entityType id prefix, and relation inverse 2020-04-29 18:14:52 +02:00
Miriam Baglioni b85ad7012a reads the blacklist from the blacklist db and writes it as a set of relations on hdfs 2020-04-29 17:29:49 +02:00
Claudio Atzori 8fd81e863d added default value for the external_stats_db_name 2020-04-29 15:36:24 +02:00
Claudio Atzori c6f3ff4462 stats workflow content relocated into common package; added <global> property definitions in stats workflow.xml 2020-04-29 14:29:27 +02:00
Sandro La Bruzzo 4a89465740 reformatted code 2020-04-29 13:24:29 +02:00
Sandro La Bruzzo a6b1a59d0a merged with maaster 2020-04-29 13:20:57 +02:00
Sandro La Bruzzo 920c0f19c3 Merge branch 'doiboost' of code-repo.d4science.org:D-Net/dnet-hadoop into doiboost 2020-04-29 13:13:16 +02:00
Sandro La Bruzzo 09f161f1f4 implemented unit test 2020-04-29 13:13:02 +02:00
miconis e0d14fe4f8 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-04-29 13:02:53 +02:00
miconis 0352d3b0ba entity dumps in dedup compressed 2020-04-29 13:02:34 +02:00
Michele Artini c43b4c8962 formatting 2020-04-29 12:56:58 +02:00
Michele Artini a5d7007005 Fix relations in migration 
Fix pom.xml in dhp-stats-update
 2020-04-29 12:05:41 +02:00
Miriam Baglioni f7695e833c resolved conflicts 2020-04-29 11:41:31 +02:00
Claudio Atzori 3616d0f88d Merge pull request 'Adding the stats workflow to the dnet-hadoop hierarchy' (#6) from spyros/dnet-hadoop:master into master 
Integrating stats update workflow.
 2020-04-29 10:35:02 +02:00
Claudio Atzori 964972d29a added data provision workflow definition WIP 2020-04-29 09:25:50 +02:00
Enrico Ottonello 1edcd53581 added shell actions to download all 11 activities files from ORCID 2020-04-28 20:25:09 +02:00
miconis 62e467eb0c assertion numbers updated to fit the new implementation of the pace-core 2020-04-28 11:46:23 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori ac25f2d8d1 integrated changes from master 2020-04-28 08:55:28 +02:00
Miriam Baglioni 2980e50edf merge upstream 2020-04-27 15:06:48 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Michele Artini 1260d03eba skip empty projects 2020-04-27 13:51:13 +02:00
Miriam Baglioni df34a4ebcc changed the configuration to add ignorecase option to each verb related to covid-19 community 2020-04-27 12:32:56 +02:00
Miriam Baglioni 7a59324ccf changed the test to check for the new ignorecase option 2020-04-27 12:31:46 +02:00
Miriam Baglioni 986c97348d added the ignorecase option to each selection verb 2020-04-27 12:31:05 +02:00