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dnet-hadoop
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Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer

This commit is contained in:
Sandro La Bruzzo 2021-06-29 14:16:12 +02:00
parent 7e08655e5f 986a8011ec
commit db933ebd21
4 changed files with 30 additions and 4 deletions
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3
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/collection/HttpConnector2.java
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@ -142,9 +142,10 @@ public class HttpConnector2 {
throw new CollectorException("4xx error: request will not be repeated. " + report);
}
if (is5xx(urlConn.getResponseCode())) {
// SERVER SIDE ERRORS RETRY ONLY on 503
switch (urlConn.getResponseCode()) {
case HttpURLConnection.HTTP_BAD_GATEWAY:
case HttpURLConnection.HTTP_UNAVAILABLE:
case HttpURLConnection.HTTP_GATEWAY_TIMEOUT:
if (retryAfter > 0) {
log
.warn(

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/contexts.sh
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@ -12,7 +12,7 @@ TARGET_DB=$2
TMP=/tmp/stats-update-`tr -dc A-Za-z0-9 </dev/urandom | head -c 6`
echo "Downloading context data"
curl -L ${CONTEXT_API}/contexts?all=true -H "accept: application/json" | /usr/local/sbin/jq -r '.[] | "\(.id),\(.label)"' > contexts.csv
curl -L ${CONTEXT_API}/contexts/?type=ri,community -H "accept: application/json" | /usr/local/sbin/jq -r '.[] | "\(.id),\(.label)"' > contexts.csv
cat contexts.csv | cut -d , -f1 | xargs -I {} curl -L ${CONTEXT_API}/context/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split(":")[0]),\(.id),\(.label)"' > categories.csv
cat categories.csv | cut -d , -f2 | sed 's/:/%3A/g'| xargs -I {} curl -L ${CONTEXT_API}/context/category/{}/?all=true | /usr/local/sbin/jq -r '.[]|"\(.id|split("::")[0])::\(.id|split("::")[1]),\(.id),\(.label)"' > concepts.csv
cat contexts.csv | sed 's/^\(.*\),\(.*\)/\1,\1::other,\2/' >> categories.csv

16
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql
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@ -10,7 +10,6 @@ create view if not exists TARGET.creation_date as select * from SOURCE.creation_
create view if not exists TARGET.funder as select * from SOURCE.funder;
create view if not exists TARGET.fundref as select * from SOURCE.fundref;
create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
--create view if not exists TARGET.roarmap as select * from SOURCE.roarmap;
create table TARGET.result as
select distinct * from (
@ -18,7 +17,7 @@ create table TARGET.result as
union all
select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id)
union all
select * from SOURCE.result r where exists (select 1 from SOURCE.result_project rp join SOURCE.project p on p.id=rp.project join SOURCE.project_organizations po on po.id=p.id join SOURCE.organization o on o.id=po.organization where ro.id=r.id and o.name in (
select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on p.id=rp.project join SOURCE.project_organizations po on po.id=p.id join SOURCE.organization o on o.id=po.organization where rp.id=r.id and o.name in (
'GEORG-AUGUST-UNIVERSITAT GOTTINGEN STIFTUNG OFFENTLICHEN RECHTS',
'ATHINA-EREVNITIKO KENTRO KAINOTOMIAS STIS TECHNOLOGIES TIS PLIROFORIAS, TON EPIKOINONION KAI TIS GNOSIS',
'Consiglio Nazionale delle Ricerche',
@ -104,6 +103,19 @@ create view if not exists TARGET.project_resultcount as select * from SOURCE.pro
create table TARGET.project_results as select id as result, project as id from TARGET.result_projects;
compute stats TARGET.project_results;
-- indicators
create table TARGET.indi_pub_green_oa as select * from SOURCE.indi_pub_green_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_green_oa;
create table TARGET.indi_pub_grey_lit as select * from SOURCE.indi_pub_grey_lit orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_grey_lit;
create table TARGET.indi_pub_doi_from_crossref as select * from SOURCE.indi_pub_doi_from_crossref orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_doi_from_crossref;
create table TARGET.indi_pub_gold_oa as select * from SOURCE.indi_pub_gold_oa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.indi_pub_gold_oa;
--denorm
alter table TARGET.result rename to TARGET.res_tmp;

13
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -272,6 +272,19 @@
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step16_7-createIndicatorsTables"/>
<error to="Kill"/>
</action>
<action name="Step16_7-createIndicatorsTables">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>indicators.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${wf:appPath()}/scripts/step16_7-createIndicatorsTables.sql</argument>
<file>indicators.sh</file>
</shell>
<ok to="Step17"/>
<error to="Kill"/>
</action>