From a66aa9bd83b657b9e3ed99de4ecd92ce5a178b06 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Tue, 7 Jul 2020 18:25:00 +0200 Subject: [PATCH] removed unuseful tests --- .../dhp/oa/graph/dump/ZenodoUploadTest.java | 125 ++---------------- 1 file changed, 9 insertions(+), 116 deletions(-) diff --git a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java index ead2e40ef..8458bfb14 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java +++ b/dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/ZenodoUploadTest.java @@ -2,9 +2,12 @@ package eu.dnetlib.dhp.oa.graph.dump; import java.io.*; +import java.io.File; import java.nio.charset.StandardCharsets; import java.nio.file.Files; +import java.util.ArrayList; import java.util.Arrays; +import java.util.List; import org.apache.commons.io.IOUtils; import org.apache.hadoop.conf.Configuration; @@ -17,16 +20,15 @@ import org.junit.jupiter.api.Test; import com.google.gson.Gson; -import eu.dnetlib.dhp.oa.graph.dump.zenodo.Creator; -import eu.dnetlib.dhp.oa.graph.dump.zenodo.Metadata; -import eu.dnetlib.dhp.oa.graph.dump.zenodo.ZenodoModel; +import eu.dnetlib.dhp.oa.graph.dump.zenodo.*; +import eu.dnetlib.dhp.schema.dump.oaf.*; public class ZenodoUploadTest { private static String workingDir; private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions"; - private final String ACCESS_TOKEN = "5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe"; + private final String ACCESS_TOKEN = ""; @BeforeAll public static void beforeAll() throws IOException { @@ -34,19 +36,7 @@ public class ZenodoUploadTest { .createTempDirectory(eu.dnetlib.dhp.oa.graph.dump.UpdateProjectInfoTest.class.getSimpleName()) .toString(); } -// -// Configuration conf = new Configuration(); -// conf.set("fs.defaultFS", "localhost"); -// -// fileSystem = FileSystem.get(conf); -// -// FSDataOutputStream fsDataOutputStream = fileSystem.create(new org.apache.hadoop.fs.Path(workingDir + "/ni")); -// -// BufferedWriter writer = new BufferedWriter(new OutputStreamWriter(fsDataOutputStream, StandardCharsets.UTF_8)); -// -// -// writer.write(ZenodoUploadTest.class.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni").toString()); -// } + @Test public void HDFSConnection() throws IOException { @@ -68,16 +58,6 @@ public class ZenodoUploadTest { .getPath()), new Path(workingDir + "/zenodo/dh-ch/dh-ch")); - System.out.println("pr"); - -// Configuration conf = new Configuration(); -// conf.set("fs.defaultFS", "localhost"); -// -// APIClient s = new APIClient( - // "https://sandbox.zenodo.org/api/deposit/depositions"); -// -// s.connect(); -// s.upload(workingDir +"/ni", "Neuroinformatics", fs); APIClient client = new APIClient(URL_STRING, ACCESS_TOKEN); @@ -89,9 +69,7 @@ public class ZenodoUploadTest { new Path(workingDir + "/zenodo"), true); while (fileStatusListIterator.hasNext()) { LocatedFileStatus fileStatus = fileStatusListIterator.next(); - // do stuff with the file like ... - // BufferedInputStream bis = new BufferedInputStream(fs.open( fileStatus.getPath())); String p_string = fileStatus.getPath().toString(); int index = p_string.lastIndexOf("/"); @@ -100,7 +78,6 @@ public class ZenodoUploadTest { String community_name = communityMap.get(community).replace(" ", "_"); fs.copyToLocalFile(fileStatus.getPath(), new Path("/tmp/" + community_name)); System.out.println(community); -// System.out.println(client.upload(bis, community)); File f = new File("/tmp/" + community_name); System.out.println(client.upload(f, community_name)); @@ -111,98 +88,14 @@ public class ZenodoUploadTest { } - ZenodoModel zenodo = new ZenodoModel(); - Metadata data = new Metadata(); - data.setTitle("Dump of OpenAIRE Communities related graph"); - data.setUpload_type("dataset"); - data.setDescription("this is a fake upload done for testing purposes"); - Creator c = new Creator(); - c.setName("Miriam Baglioni"); - c.setAffiliation("CNR _ISTI"); - data.setCreators(Arrays.asList(c)); - zenodo.setMetadata(data); + String metadata = "{\"metadata\":{\"access_right\":\"open\",\"communities\":[{\"identifier\":\"openaire-research-graph\"}],\"creators\":[{\"affiliation\":\"CNR - ISTI\",\"name\":\"Manghi, Paolo\",\"orcid\":\"0000-0001-7291-3210\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Atzori, Claudio\",\"orcid\":\"0000-0001-9613-6639\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Bardi, Alessia\",\"orcid\":\"0000-0002-1112-1292\"},{\"affiliation\":\"ISTI - CNR\",\"name\":\"Baglioni, Miriam\",\"orcid\":\"0000-0002-2273-9004\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Shirrwagen, Jochen\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Dimitropoulos, Harry\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"La Bruzzo, Sandro\",\"orcid\":\"0000-0003-2855-1245\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Foufoulas, Ioannis\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Löhden, Aenne\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Bäcker, Amelie\",\"orcid\":\"0000-0001-6015-2063\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Mannocci, Andrea\",\"orcid\":\"0000-0002-5193-7851\"},{\"affiliation\":\"University of Warsaw\",\"name\":\"Horst, Marek\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Czerniak, Andreas\",\"orcid\":\"0000-0003-3883-4169\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kiatropoulou, Katerina\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Kokogiannaki, Argiro\",\"orcid\":\"0000-0002-3880-0244\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"De Bonis, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Artini, Michele\"},{\"affiliation\":\"CNR - ISTI\",\"name\":\"Ottonello, Enrico\"},{\"affiliation\":\"Athena Research and Innovation Centre\",\"name\":\"Lempesis, Antonis\"},{\"affiliation\":\"CERN\",\"name\":\"Ioannidis, Alexandros\"},{\"affiliation\":\"University of Bielefeld\",\"name\":\"Summan, Friedrich\"}],\"description\":\"\\u003cp\\u003eThis dataset contains dumps of the OpenAIRE Research Graph containing metadata records relevant for the research communities and initiatives collaborating with OpenAIRE\\u003c/p\\u003e. \\u003cp\\u003eEach dataset is a zip containing a file with one json per line. Each json is compliant to the schema available at XXXX\\u003c/p\\u003e\",\"grants\":[{\"id\":\"777541\"},{\"id\":\"824091\"},{\"id\":\"824323\"}],\"keywords\":[\"Open Science\",\"Scholarly Communication\",\"Information Science\"],\"language\":\"eng\",\"license\":\"CC-BY-4.0\",\"title\":\"OpenAIRE Research Graph: Dumps for research communities and initiatives.\",\"upload_type\":\"dataset\",\"version\":\"1.0\"}}"; - System.out.println(client.sendMretadata(new Gson().toJson(zenodo))); + System.out.println(client.sendMretadata(metadata)); System.out.println(client.publish()); } - @Test - public void serializeMetadata() { - ZenodoModel zenodo = new ZenodoModel(); - Metadata data = new Metadata(); - - data.setTitle("Dump of OpenAIRE Communities related graph"); - data.setUpload_type("dataset"); - data.setDescription("this is a fake uploade done for testing purposes"); - Creator c = new Creator(); - c.setName("Miriam Baglioni"); - c.setAffiliation("CNR _ISTI"); - data.setCreators(Arrays.asList(c)); - zenodo.setMetadata(data); - - System.out.println(new Gson().toJson(zenodo)); - - } - - @Test - public void testConnection() throws IOException { - - // InputStream is = getClass().getClassLoader().getResourceAsStream("eu/dnetlib/dhp/oa/graph/dump/zenodo/ni"); - APIClient s = new APIClient( - "https://sandbox.zenodo.org/api/deposit/depositions", - "5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe"); - - Assertions.assertEquals(201, s.connect()); - - s - .upload( - new File(getClass() - .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/ni") - .getPath()), - "Neuroinformatics"); - -// s.upload(getClass() -// .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/dh-ch") -// .getPath(), "DigitalHumanitiesandCulturalHeritage"); -// -// s.upload(getClass() -// .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/egi") -// .getPath(), "EGI"); -// -// s.upload(getClass() -// .getResource("/eu/dnetlib/dhp/oa/graph/dump/zenodo/science-innovation-policy") -// .getPath(), "ScienceandInnovationPolicyStudies"); - -// ZenodoModel zenodo = new ZenodoModel(); -// Metadata data = new Metadata(); -// -// data.setTitle("Dump of OpenAIRE Communities related graph"); -// data.setUpload_type("dataset"); -// data.setDescription("this is a fake uploade done for testing purposes"); -// Creator c = new Creator(); -// c.setName("Miriam Baglioni"); -// c.setAffiliation("CNR _ISTI"); -// data.setCreators(Arrays.asList(c)); -// zenodo.setMetadata(data); -// -// s.sendMretadata(new Gson().toJson(zenodo)); -// -// s.publish(); - - } - - @Test - public void testConnectionOnly() throws IOException { - APIClient s = new APIClient( - "https://sandbox.zenodo.org/api/deposit/depositions", - "5ImUj0VC1ICg4ifK5dc3AGzJhcfAB4osxrFlsr8WxHXxjaYgCE0hY8HZcDoe"); - - int tmp = s.connect(); - - System.out.println(tmp); - } }