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dnet-hadoop
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fixed error on empty intersection with publication and relation on export to OAF

This commit is contained in:
Sandro La Bruzzo 2020-10-08 17:29:29 +02:00
parent eec418cd26
commit 734934e2eb
5 changed files with 136 additions and 154 deletions
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2
dhp-common/src/main/java/eu/dnetlib/dhp/oa/merge/AuthorMerger.java
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@ -1,4 +1,6 @@
package eu.dnetlib.dhp.oa.merge;
import java.text.Normalizer;
import java.util.*;
import java.util.stream.Collectors;

3
dhp-workflows/dhp-dedup-openaire/src/main/java/eu/dnetlib/dhp/oa/dedup/DedupRecordFactory.java
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@ -1,12 +1,10 @@
package eu.dnetlib.dhp.oa.dedup;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import eu.dnetlib.dhp.oa.merge.AuthorMerger;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.api.java.function.MapGroupsFunction;
import org.apache.spark.sql.Dataset;
@ -19,6 +17,7 @@ import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.common.collect.Lists;
import eu.dnetlib.dhp.oa.merge.AuthorMerger;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.*;
import scala.Tuple2;

2
dhp-workflows/dhp-dedup-openaire/src/test/java/eu/dnetlib/dhp/oa/dedup/EntityMergerTest.java
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@ -10,11 +10,11 @@ import java.io.Serializable;
import java.nio.file.Paths;
import java.util.*;
import eu.dnetlib.dhp.oa.merge.AuthorMerger;
import org.codehaus.jackson.map.ObjectMapper;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.oa.merge.AuthorMerger;
import eu.dnetlib.dhp.schema.oaf.*;
import eu.dnetlib.pace.util.MapDocumentUtil;
import scala.Tuple2;

29
dhp-workflows/dhp-graph-provision-scholexplorer/src/main/java/eu/dnetlib/dhp/export/DLIToOAF.scala
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@ -272,30 +272,11 @@ object DLIToOAF {
result
}
// def convertDLIRelation(r: DLIRelation): Relation = {
//
// val result = new Relation
// if (!relationTypeMapping.contains(r.getRelType))
// return null
//
// if (r.getProperties == null || r.getProperties.size() == 0 || (r.getProperties.size() == 1 && r.getProperties.get(0) == null))
// return null
// val t = relationTypeMapping.get(r.getRelType)
//
// result.setRelType("resultResult")
// result.setRelClass(t.get._1)
// result.setSubRelType(t.get._2)
// result.setCollectedfrom(r.getProperties.asScala.map(c => collectedFromMap.getOrElse(c.getKey, null)).filter(p => p != null).asJava)
// result.setSource(generateId(r.getSource))
// result.setTarget(generateId(r.getTarget))
//
// if (result.getSource.equals(result.getTarget))
// return null
// result.setDataInfo(generateDataInfo())
//
// result
// }
def convertDLIRelation(r: Relation): Relation = {
r.setSource(r.getSource.replaceFirst("50|","50|scholix_____::" ).replaceFirst("60|", "60|scholix_____::"))
r.setTarget(r.getTarget.replaceFirst("50|","50|scholix_____::" ).replaceFirst("60|", "60|scholix_____::"))
r
}
def convertDLIDatasetTOOAF(d: DLIDataset): Dataset = {

2
dhp-workflows/dhp-graph-provision-scholexplorer/src/main/java/eu/dnetlib/dhp/export/SparkExportContentForOpenAire.scala
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@ -44,7 +44,7 @@ object SparkExportContentForOpenAire {
val dsRel = spark.read.load(s"$workingPath/relation_b").as[Relation]
dsRel.filter(r => r.getDataInfo==null || r.getDataInfo.getDeletedbyinference ==false).write.mode(SaveMode.Overwrite).save(s"$workingPath/export/relationDS")
dsRel.filter(r => r.getDataInfo==null || r.getDataInfo.getDeletedbyinference ==false).map(DLIToOAF.convertDLIRelation).write.mode(SaveMode.Overwrite).save(s"$workingPath/export/relationDS")
val dsPubs = spark.read.load(s"$workingPath/publication").as[DLIPublication]