forked from D-Net/dnet-hadoop
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi
This commit is contained in:
commit
5c9a727895
|
|
@ -5,12 +5,16 @@ import java.util.ArrayList;
|
|||
import java.util.Arrays;
|
||||
import java.util.List;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
|
||||
import eu.dnetlib.broker.objects.OaBrokerMainEntity;
|
||||
import eu.dnetlib.dhp.broker.model.Topic;
|
||||
import eu.dnetlib.dhp.broker.oa.matchers.UpdateMatcher;
|
||||
|
||||
public class EnrichMissingAbstract extends UpdateMatcher<String> {
|
||||
|
||||
private static final int MIN_LENGTH = 200;
|
||||
|
||||
public EnrichMissingAbstract() {
|
||||
super(1,
|
||||
s -> Topic.ENRICH_MISSING_ABSTRACT,
|
||||
|
|
@ -21,10 +25,15 @@ public class EnrichMissingAbstract extends UpdateMatcher<String> {
|
|||
@Override
|
||||
protected List<String> findDifferences(final OaBrokerMainEntity source, final OaBrokerMainEntity target) {
|
||||
if (isMissing(target.getAbstracts()) && !isMissing(source.getAbstracts())) {
|
||||
return Arrays.asList(source.getAbstracts().get(0));
|
||||
} else {
|
||||
return new ArrayList<>();
|
||||
return source
|
||||
.getAbstracts()
|
||||
.stream()
|
||||
.filter(s -> StringUtils.normalizeSpace(s).length() >= MIN_LENGTH)
|
||||
.map(Arrays::asList)
|
||||
.findFirst()
|
||||
.orElse(new ArrayList<>());
|
||||
}
|
||||
return new ArrayList<>();
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,4 +1,4 @@
|
|||
<workflow-app name="create broker events - partial" xmlns="uri:oozie:workflow:0.5">
|
||||
<workflow-app name="update broker notifications" xmlns="uri:oozie:workflow:0.5">
|
||||
|
||||
<parameters>
|
||||
<property>
|
||||
|
|
|
|||
|
|
@ -1,10 +1,36 @@
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|||
|
||||
package eu.dnetlib.dhp.oa.graph.raw;
|
||||
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.*;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.DATASET_DEFAULT_RESULTTYPE;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.DNET_ACCESS_MODES;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.DNET_PID_TYPES;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.IS_PRODUCED_BY;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.NOT_AVAILABLE;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.ORP_DEFAULT_RESULTTYPE;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.OUTCOME;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.PRODUCES;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.PUBLICATION_DEFAULT_RESULTTYPE;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.REPOSITORY_PROVENANCE_ACTIONS;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.RESULT_PROJECT;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.SOFTWARE_DEFAULT_RESULTTYPE;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.UNKNOWN;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.createOpenaireId;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.dataInfo;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.field;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.journal;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.keyValue;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.listFields;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.oaiIProvenance;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.qualifier;
|
||||
import static eu.dnetlib.dhp.schema.oaf.OafMapperUtils.structuredProperty;
|
||||
|
||||
import java.util.*;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
import java.util.Date;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Optional;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.dom4j.Document;
|
||||
|
|
@ -15,7 +41,24 @@ import org.dom4j.Node;
|
|||
import eu.dnetlib.dhp.oa.graph.raw.common.VocabularyGroup;
|
||||
import eu.dnetlib.dhp.schema.common.LicenseComparator;
|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants;
|
||||
import eu.dnetlib.dhp.schema.oaf.*;
|
||||
import eu.dnetlib.dhp.schema.oaf.Author;
|
||||
import eu.dnetlib.dhp.schema.oaf.Context;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||
import eu.dnetlib.dhp.schema.oaf.Field;
|
||||
import eu.dnetlib.dhp.schema.oaf.GeoLocation;
|
||||
import eu.dnetlib.dhp.schema.oaf.Instance;
|
||||
import eu.dnetlib.dhp.schema.oaf.Journal;
|
||||
import eu.dnetlib.dhp.schema.oaf.KeyValue;
|
||||
import eu.dnetlib.dhp.schema.oaf.OAIProvenance;
|
||||
import eu.dnetlib.dhp.schema.oaf.Oaf;
|
||||
import eu.dnetlib.dhp.schema.oaf.OtherResearchProduct;
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||
import eu.dnetlib.dhp.schema.oaf.Software;
|
||||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
|
||||
public abstract class AbstractMdRecordToOafMapper {
|
||||
|
||||
|
|
@ -92,10 +135,10 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
}
|
||||
|
||||
protected String getResultType(final Document doc, final List<Instance> instances) {
|
||||
String type = doc.valueOf("//dr:CobjCategory/@type");
|
||||
final String type = doc.valueOf("//dr:CobjCategory/@type");
|
||||
|
||||
if (StringUtils.isBlank(type) & vocs.vocabularyExists(ModelConstants.DNET_RESULT_TYPOLOGIES)) {
|
||||
String instanceType = instances
|
||||
final String instanceType = instances
|
||||
.stream()
|
||||
.map(i -> i.getInstancetype().getClassid())
|
||||
.findFirst()
|
||||
|
|
@ -256,13 +299,11 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
r.setDataInfo(info);
|
||||
r.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
r.setId(createOpenaireId(50, doc.valueOf("//dri:objIdentifier"), false));
|
||||
|
||||
r.setOriginalId(Arrays.asList(findOriginalId(doc)));
|
||||
|
||||
r.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r.setPid(prepareResultPids(doc, info));
|
||||
r.setDateofcollection(doc.valueOf("//dr:dateOfCollection"));
|
||||
r.setDateoftransformation(doc.valueOf("//dr:dateOfTransformation"));
|
||||
r.setDateofcollection(doc.valueOf("//dr:dateOfCollection|//dri:dateOfCollection"));
|
||||
r.setDateoftransformation(doc.valueOf("//dr:dateOfTransformation|//dri:dateOfTransformation"));
|
||||
r.setExtraInfo(new ArrayList<>()); // NOT PRESENT IN MDSTORES
|
||||
r.setOaiprovenance(prepareOAIprovenance(doc));
|
||||
r.setAuthor(prepareAuthors(doc, info));
|
||||
|
|
|
|||
|
|
@ -162,15 +162,21 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
for (final Object o : doc.selectNodes("//datacite:date")) {
|
||||
final String dateType = ((Node) o).valueOf("@dateType");
|
||||
if (StringUtils.isBlank(dateType)
|
||||
&& !dateType.equalsIgnoreCase("Accepted")
|
||||
&& !dateType.equalsIgnoreCase("Issued")
|
||||
&& !dateType.equalsIgnoreCase("Updated")
|
||||
&& !dateType.equalsIgnoreCase("Available")) {
|
||||
|| (!dateType.equalsIgnoreCase("Accepted")
|
||||
&& !dateType.equalsIgnoreCase("Issued")
|
||||
&& !dateType.equalsIgnoreCase("Updated")
|
||||
&& !dateType.equalsIgnoreCase("Available"))) {
|
||||
res
|
||||
.add(
|
||||
structuredProperty(
|
||||
((Node) o).getText(), "UNKNOWN", "UNKNOWN", DNET_DATA_CITE_DATE, DNET_DATA_CITE_DATE,
|
||||
info));
|
||||
} else {
|
||||
res
|
||||
.add(
|
||||
structuredProperty(
|
||||
((Node) o).getText(), dateType, dateType, DNET_DATA_CITE_DATE, DNET_DATA_CITE_DATE,
|
||||
info));
|
||||
}
|
||||
}
|
||||
return res;
|
||||
|
|
@ -341,7 +347,7 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
getRelation(
|
||||
otherId, docId, RESULT_RESULT, SUPPLEMENT, IS_SUPPLEMENTED_BY, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
} else if (type.equals("IsPartOf")) {
|
||||
} else if (type.equalsIgnoreCase("IsPartOf")) {
|
||||
|
||||
res
|
||||
.add(
|
||||
|
|
|
|||
|
|
@ -7,8 +7,6 @@ import static org.mockito.Mockito.lenient;
|
|||
import java.io.IOException;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
import java.util.function.Predicate;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
|
|
@ -21,7 +19,10 @@ import org.mockito.junit.jupiter.MockitoExtension;
|
|||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.VocabularyGroup;
|
||||
import eu.dnetlib.dhp.schema.oaf.*;
|
||||
import eu.dnetlib.dhp.schema.oaf.Publication;
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
import eu.dnetlib.dhp.schema.oaf.Result;
|
||||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
|
|
|
|||
|
|
@ -78,6 +78,8 @@ public class MappersTest {
|
|||
assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
|
||||
assertFalse(p.getDataInfo().getInvisible());
|
||||
assertTrue(p.getSource().size() == 1);
|
||||
assertTrue(StringUtils.isNotBlank(p.getDateofcollection()));
|
||||
assertTrue(StringUtils.isNotBlank(p.getDateoftransformation()));
|
||||
|
||||
assertTrue(p.getAuthor().size() > 0);
|
||||
final Optional<Author> author = p
|
||||
|
|
@ -329,7 +331,7 @@ public class MappersTest {
|
|||
@Test
|
||||
void testODFRecord() throws IOException {
|
||||
final String xml = IOUtils.toString(getClass().getResourceAsStream("odf_record.xml"));
|
||||
List<Oaf> list = new OdfToOafMapper(vocs, false).processMdRecord(xml);
|
||||
final List<Oaf> list = new OdfToOafMapper(vocs, false).processMdRecord(xml);
|
||||
System.out.println("***************");
|
||||
System.out.println(new ObjectMapper().writeValueAsString(list));
|
||||
System.out.println("***************");
|
||||
|
|
@ -340,6 +342,22 @@ public class MappersTest {
|
|||
assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
|
||||
}
|
||||
|
||||
@Test
|
||||
void testTextGrid() throws IOException {
|
||||
final String xml = IOUtils.toString(getClass().getResourceAsStream("textgrid.xml"));
|
||||
final List<Oaf> list = new OdfToOafMapper(vocs, false).processMdRecord(xml);
|
||||
|
||||
System.out.println("***************");
|
||||
System.out.println(new ObjectMapper().writeValueAsString(list));
|
||||
System.out.println("***************");
|
||||
|
||||
final Dataset p = (Dataset) list.get(0);
|
||||
assertValidId(p.getId());
|
||||
assertValidId(p.getCollectedfrom().get(0).getKey());
|
||||
assertTrue(StringUtils.isNotBlank(p.getTitle().get(0).getValue()));
|
||||
System.out.println(p.getTitle().get(0).getValue());
|
||||
}
|
||||
|
||||
private void assertValidId(final String id) {
|
||||
assertEquals(49, id.length());
|
||||
assertEquals('|', id.charAt(2));
|
||||
|
|
|
|||
|
|
@ -7,13 +7,12 @@
|
|||
<header xmlns="http://namespace.openaire.eu/">
|
||||
<dri:objIdentifier>pensoft_____::00ea4a1cd53806a97d62ea6bf268f2a2</dri:objIdentifier>
|
||||
<dri:recordIdentifier>10.3897/oneeco.2.e13718</dri:recordIdentifier>
|
||||
<dri:dateOfCollection/>
|
||||
<dri:mdFormat/>
|
||||
<dri:mdFormatInterpretation/>
|
||||
<dri:repositoryId/>
|
||||
<dr:objectIdentifier/>
|
||||
<dr:dateOfCollection>2020-03-23T00:20:51.392Z</dr:dateOfCollection>
|
||||
<dr:dateOfTransformation>2020-03-23T00:26:59.078Z</dr:dateOfTransformation>
|
||||
<dri:dateOfCollection>2020-03-23T00:20:51.392Z</dri:dateOfCollection>
|
||||
<dri:dateOfTransformation>2020-03-23T00:26:59.078Z</dri:dateOfTransformation>
|
||||
<oaf:datasourceprefix>pensoft_____</oaf:datasourceprefix>
|
||||
</header>
|
||||
<metadata xmlns="http://namespace.openaire.eu/">
|
||||
|
|
|
|||
|
|
@ -0,0 +1,113 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<record xmlns:dr="http://www.driver-repository.eu/namespace/dr"
|
||||
xmlns:oaf="http://namespace.openaire.eu/oaf"
|
||||
xmlns:oai="http://www.openarchives.org/OAI/2.0/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
|
||||
<oai:header xmlns="http://namespace.openaire.eu/"
|
||||
xmlns:dc="http://purl.org/dc/elements/1.1/"
|
||||
xmlns:dri="http://www.driver-repository.eu/namespace/dri" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance">
|
||||
<dri:objIdentifier>r3f52792889d::000051aa1f61d77d2c0b340091f8024e</dri:objIdentifier>
|
||||
<dri:recordIdentifier>textgrid:q9cv.0</dri:recordIdentifier>
|
||||
<dri:dateOfCollection>2020-11-17T09:34:11.128+01:00</dri:dateOfCollection>
|
||||
<oaf:datasourceprefix>r3f52792889d</oaf:datasourceprefix>
|
||||
<identifier xmlns="http://www.openarchives.org/OAI/2.0/">textgrid:q9cv.0</identifier>
|
||||
<datestamp xmlns="http://www.openarchives.org/OAI/2.0/">2012-01-21T13:35:20Z</datestamp>
|
||||
<dr:dateOfTransformation>2020-11-17T09:46:21.551+01:00</dr:dateOfTransformation>
|
||||
</oai:header>
|
||||
<metadata>
|
||||
<datacite:resource xmlns="http://www.openarchives.org/OAI/2.0/"
|
||||
xmlns:datacite="http://datacite.org/schema/kernel-3"
|
||||
xmlns:dc="http://purl.org/dc/elements/1.1/"
|
||||
xmlns:dri="http://www.driver-repository.eu/namespace/dri" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance">
|
||||
<datacite:identifier identifierType="Handle">hdl:11858/00-1734-0000-0003-7664-F</datacite:identifier>
|
||||
<datacite:creators>
|
||||
<datacite:creator>
|
||||
<datacite:creatorName>Hoffmann von Fallersleben, August Heinrich</datacite:creatorName>
|
||||
<datacite:nameIdentifier nameIdentifierScheme="pnd" schemeURI="https://de.dariah.eu/pnd-service">118552589</datacite:nameIdentifier>
|
||||
</datacite:creator>
|
||||
</datacite:creators>
|
||||
<datacite:titles>
|
||||
<datacite:title titleType="Other">Mailied</datacite:title>
|
||||
<datacite:title titleType="Other">August Heinrich Hoffmann von Fallersleben: Unpolitische Lieder von Hoffmann von Fallersleben, 1. + 2. Theil, 1. Theil, Hamburg: Hoffmann und Campe, 1841.</datacite:title>
|
||||
</datacite:titles>
|
||||
<datacite:publisher>TextGrid</datacite:publisher>
|
||||
<datacite:publicationYear>2012</datacite:publicationYear>
|
||||
<datacite:contributors>
|
||||
<datacite:contributor contributorType="DataManager">
|
||||
<datacite:contributorName>tvitt@textgrid.de</datacite:contributorName>
|
||||
</datacite:contributor>
|
||||
<datacite:contributor contributorType="Other">
|
||||
<datacite:contributorName>Digitale Bibliothek</datacite:contributorName>
|
||||
<datacite:nameIdentifier nameIdentifierScheme="textgrid">TGPR-372fe6dc-57f2-6cd4-01b5-2c4bbefcfd3c</datacite:nameIdentifier>
|
||||
</datacite:contributor>
|
||||
</datacite:contributors>
|
||||
<datacite:dates>
|
||||
<datacite:date dateType="Created">2012-01-21T13:35:20Z</datacite:date>
|
||||
<datacite:date dateType="Issued">2012-01-21T13:35:20Z</datacite:date>
|
||||
<datacite:date dateType="Updated">2012-01-21T13:35:20Z</datacite:date>
|
||||
</datacite:dates>
|
||||
<datacite:resourceType resourceTypeGeneral="Dataset"/>
|
||||
<alternateIdentifiers>
|
||||
<datacite:alternateIdentifier alternateIdentifierType="URI">textgrid:q9cv.0</datacite:alternateIdentifier>
|
||||
<alternateIdentifier alternateIdentifierType="URL">http://hdl.handle.net/hdl:11858/00-1734-0000-0003-7664-F</alternateIdentifier>
|
||||
</alternateIdentifiers>
|
||||
<datacite:relatedIdentifiers>
|
||||
<datacite:relatedIdentifier relatedIdentifierType="Handle" relationType="IsPartOf">hdl:11858/00-1734-0000-0003-7666-B</datacite:relatedIdentifier>
|
||||
</datacite:relatedIdentifiers>
|
||||
<datacite:sizes>
|
||||
<datacite:size>527 Bytes</datacite:size>
|
||||
</datacite:sizes>
|
||||
<datacite:formats>
|
||||
<datacite:format>text/tg.edition+tg.aggregation+xml</datacite:format>
|
||||
</datacite:formats>
|
||||
<datacite:version>0</datacite:version>
|
||||
<datacite:rightsList>
|
||||
<datacite:rights rightsURI="http://creativecommons.org/licenses/by/3.0/de/legalcode"> Der annotierte Datenbestand der Digitalen Bibliothek inklusive
|
||||
Metadaten sowie davon einzeln zugängliche Teile sind eine Abwandlung
|
||||
des Datenbestandes von www.editura.de durch TextGrid und werden
|
||||
unter der Lizenz Creative Commons Namensnennung 3.0 Deutschland
|
||||
Lizenz (by-Nennung TextGrid) veröffentlicht. Die Lizenz bezieht sich
|
||||
nicht auf die der Annotation zu Grunde liegenden allgemeinfreien
|
||||
Texte (Siehe auch Punkt 2 der Lizenzbestimmungen).</datacite:rights>
|
||||
<datacite:rights rightsURI="info:eu-repo/semantics/openAccess"/>
|
||||
</datacite:rightsList>
|
||||
<datacite:descriptions>
|
||||
<datacite:description descriptionType="Abstract"/>
|
||||
</datacite:descriptions>
|
||||
<datacite:geoLocations>
|
||||
<datacite:geoLocation>
|
||||
<datacite:geoLocationPlace
|
||||
xmlns:xs="http://www.w3.org/2001/XMLSchema" xsi:type="xs:string">Hamburg</datacite:geoLocationPlace>
|
||||
</datacite:geoLocation>
|
||||
</datacite:geoLocations>
|
||||
</datacite:resource>
|
||||
<oaf:identifier identifierType="handle">hdl:11858/00-1734-0000-0003-7664-F</oaf:identifier>
|
||||
<dr:CobjCategory type="dataset">0021</dr:CobjCategory>
|
||||
<oaf:refereed>0002</oaf:refereed>
|
||||
<oaf:dateAccepted>2012-01-01</oaf:dateAccepted>
|
||||
<oaf:accessrights>OPEN</oaf:accessrights>
|
||||
<oaf:license>http://creativecommons.org/licenses/by/3.0/de/legalcode</oaf:license>
|
||||
<oaf:language>und</oaf:language>
|
||||
<oaf:hostedBy id="re3data_____::r3d100011365" name="TextGrid Repository"/>
|
||||
<oaf:collectedFrom id="re3data_____::r3d100011365" name="TextGrid Repository"/>
|
||||
</metadata>
|
||||
<about xmlns:dc="http://purl.org/dc/elements/1.1/"
|
||||
xmlns:dri="http://www.driver-repository.eu/namespace/dri" xmlns:prov="http://www.openarchives.org/OAI/2.0/provenance">
|
||||
<provenance xmlns="http://www.openarchives.org/OAI/2.0/provenance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/provenance http://www.openarchives.org/OAI/2.0/provenance.xsd">
|
||||
<originDescription altered="true" harvestDate="2020-11-17T09:34:11.128+01:00">
|
||||
<baseURL>https%3A%2F%2Fdev.textgridlab.org%2F1.0%2Ftgoaipmh%2Foai</baseURL>
|
||||
<identifier>textgrid:q9cv.0</identifier>
|
||||
<datestamp>2012-01-21T13:35:20Z</datestamp>
|
||||
<metadataNamespace>http://schema.datacite.org/oai/oai-1.0/</metadataNamespace>
|
||||
</originDescription>
|
||||
</provenance>
|
||||
<oaf:datainfo>
|
||||
<oaf:inferred>false</oaf:inferred>
|
||||
<oaf:deletedbyinference>false</oaf:deletedbyinference>
|
||||
<oaf:trust>0.9</oaf:trust>
|
||||
<oaf:inferenceprovenance/>
|
||||
<oaf:provenanceaction classid="sysimport:crosswalk"
|
||||
classname="sysimport:crosswalk"
|
||||
schemeid="dnet:provenanceActions" schemename="dnet:provenanceActions"/>
|
||||
</oaf:datainfo>
|
||||
</about>
|
||||
</record>
|
||||
|
|
@ -22,6 +22,12 @@
|
|||
<dependency>
|
||||
<groupId>com.jayway.jsonpath</groupId>
|
||||
<artifactId>json-path</artifactId>
|
||||
<exclusions>
|
||||
<exclusion>
|
||||
<groupId>org.slf4j</groupId>
|
||||
<artifactId>slf4j-api</artifactId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>dom4j</groupId>
|
||||
|
|
@ -82,9 +88,6 @@
|
|||
<groupId>org.codehaus.woodstox</groupId>
|
||||
<artifactId>*</artifactId>
|
||||
</exclusion>
|
||||
|
||||
|
||||
|
||||
<exclusion>
|
||||
<groupId>com.github.ben-manes.caffeine</groupId>
|
||||
<artifactId>*</artifactId>
|
||||
|
|
@ -109,11 +112,10 @@
|
|||
<groupId>org.apache.hadoop</groupId>
|
||||
<artifactId>*</artifactId>
|
||||
</exclusion>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
<exclusion>
|
||||
<groupId>org.apache.zookeeper</groupId>
|
||||
<artifactId>zookeeper</artifactId>
|
||||
</exclusion>
|
||||
</exclusions>
|
||||
</dependency>
|
||||
<dependency>
|
||||
|
|
|
|||
|
|
@ -3,6 +3,10 @@ package eu.dnetlib.dhp.oa.provision;
|
|||
|
||||
public class ProvisionConstants {
|
||||
|
||||
public static final String LAYOUT = "index";
|
||||
public static final String INTERPRETATION = "openaire";
|
||||
public static final String SEPARATOR = "-";
|
||||
|
||||
public static final int MAX_EXTERNAL_ENTITIES = 50;
|
||||
public static final int MAX_AUTHORS = 200;
|
||||
public static final int MAX_AUTHOR_FULLNAME_LENGTH = 1000;
|
||||
|
|
@ -11,4 +15,8 @@ public class ProvisionConstants {
|
|||
public static final int MAX_ABSTRACT_LENGTH = 100000;
|
||||
public static final int MAX_INSTANCES = 10;
|
||||
|
||||
public static String getCollectionName(String format) {
|
||||
return format + SEPARATOR + LAYOUT + SEPARATOR + INTERPRETATION;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -14,11 +14,12 @@ import org.slf4j.Logger;
|
|||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ZkServers;
|
||||
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
public class SolrAdminApplication extends SolrApplication implements Closeable {
|
||||
public class SolrAdminApplication implements Closeable {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(SolrAdminApplication.class);
|
||||
|
||||
|
|
@ -54,12 +55,12 @@ public class SolrAdminApplication extends SolrApplication implements Closeable {
|
|||
.orElse(false);
|
||||
log.info("commit: {}", commit);
|
||||
|
||||
final ISLookUpService isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
|
||||
final ISLookupClient isLookup = new ISLookupClient(ISLookupClientFactory.getLookUpService(isLookupUrl));
|
||||
|
||||
final String zkHost = getZkHost(isLookup);
|
||||
final String zkHost = isLookup.getZkHost();
|
||||
log.info("zkHost: {}", zkHost);
|
||||
|
||||
final String collection = format + SEPARATOR + LAYOUT + SEPARATOR + INTERPRETATION;
|
||||
final String collection = ProvisionConstants.getCollectionName(format);
|
||||
log.info("collection: {}", collection);
|
||||
|
||||
try (SolrAdminApplication app = new SolrAdminApplication(zkHost)) {
|
||||
|
|
|
|||
|
|
@ -1,40 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
public abstract class SolrApplication {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(SolrApplication.class);
|
||||
|
||||
protected static final String LAYOUT = "index";
|
||||
protected static final String INTERPRETATION = "openaire";
|
||||
protected static final String SEPARATOR = "-";
|
||||
protected static final String DATE_FORMAT = "yyyy-MM-dd'T'hh:mm:ss'Z'";
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the zookeeper quorum of the Solr server
|
||||
*
|
||||
* @param isLookup
|
||||
* @return the zookeeper quorum of the Solr server
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
protected static String getZkHost(ISLookUpService isLookup) throws ISLookUpException {
|
||||
return doLookup(
|
||||
isLookup,
|
||||
"for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='IndexServiceResourceType'] return $x//PROTOCOL[./@name='solr']/@address/string()");
|
||||
}
|
||||
|
||||
protected static String doLookup(ISLookUpService isLookup, String xquery) throws ISLookUpException {
|
||||
log.info(String.format("running xquery: %s", xquery));
|
||||
final String res = isLookup.getResourceProfileByQuery(xquery);
|
||||
log.info(String.format("got response (100 chars): %s", StringUtils.left(res, 100) + " ..."));
|
||||
return res;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -10,6 +10,7 @@ import java.text.SimpleDateFormat;
|
|||
import java.util.Date;
|
||||
import java.util.Optional;
|
||||
|
||||
import javax.swing.text.html.Option;
|
||||
import javax.xml.transform.Transformer;
|
||||
import javax.xml.transform.TransformerException;
|
||||
import javax.xml.transform.stream.StreamResult;
|
||||
|
|
@ -20,27 +21,48 @@ import org.apache.commons.lang3.StringUtils;
|
|||
import org.apache.hadoop.io.Text;
|
||||
import org.apache.solr.common.SolrInputDocument;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.JavaRDD;
|
||||
import org.apache.spark.api.java.JavaSparkContext;
|
||||
import org.apache.spark.rdd.RDD;
|
||||
import org.apache.spark.sql.Encoders;
|
||||
import org.apache.spark.sql.SaveMode;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import com.lucidworks.spark.util.SolrSupport;
|
||||
|
||||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.oa.provision.model.SerializableSolrInputDocument;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.StreamingInputDocumentFactory;
|
||||
import eu.dnetlib.dhp.utils.ISLookupClientFactory;
|
||||
import eu.dnetlib.dhp.utils.saxon.SaxonTransformerFactory;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpDocumentNotFoundException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
public class XmlIndexingJob extends SolrApplication {
|
||||
public class XmlIndexingJob {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(XmlIndexingJob.class);
|
||||
|
||||
public enum OutputFormat {
|
||||
SOLR, HDFS
|
||||
}
|
||||
|
||||
private static final Integer DEFAULT_BATCH_SIZE = 1000;
|
||||
|
||||
protected static final String DATE_FORMAT = "yyyy-MM-dd'T'hh:mm:ss'Z'";
|
||||
|
||||
private String inputPath;
|
||||
|
||||
private String format;
|
||||
|
||||
private int batchSize;
|
||||
|
||||
private OutputFormat outputFormat;
|
||||
|
||||
private String outputPath;
|
||||
|
||||
private SparkSession spark;
|
||||
|
||||
public static void main(String[] args) throws Exception {
|
||||
|
||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
||||
|
|
@ -60,27 +82,64 @@ public class XmlIndexingJob extends SolrApplication {
|
|||
final String inputPath = parser.get("inputPath");
|
||||
log.info("inputPath: {}", inputPath);
|
||||
|
||||
final String isLookupUrl = parser.get("isLookupUrl");
|
||||
log.info("isLookupUrl: {}", isLookupUrl);
|
||||
|
||||
final String format = parser.get("format");
|
||||
log.info("format: {}", format);
|
||||
|
||||
final Integer batchSize = parser.getObjectMap().containsKey("batchSize")
|
||||
? Integer.valueOf(parser.get("batchSize"))
|
||||
: DEFAULT_BATCH_SIZE;
|
||||
final String outputPath = Optional
|
||||
.ofNullable(parser.get("outputPath"))
|
||||
.map(StringUtils::trim)
|
||||
.orElse(null);
|
||||
log.info("outputPath: {}", outputPath);
|
||||
|
||||
final Integer batchSize = Optional
|
||||
.ofNullable(parser.get("batchSize"))
|
||||
.map(Integer::valueOf)
|
||||
.orElse(DEFAULT_BATCH_SIZE);
|
||||
log.info("batchSize: {}", batchSize);
|
||||
|
||||
final ISLookUpService isLookup = ISLookupClientFactory.getLookUpService(isLookupUrl);
|
||||
final String fields = getLayoutSource(isLookup, format);
|
||||
final OutputFormat outputFormat = Optional
|
||||
.ofNullable(parser.get("outputFormat"))
|
||||
.map(OutputFormat::valueOf)
|
||||
.orElse(OutputFormat.SOLR);
|
||||
log.info("outputFormat: {}", outputFormat);
|
||||
|
||||
final SparkConf conf = new SparkConf();
|
||||
conf.registerKryoClasses(new Class[] {
|
||||
SerializableSolrInputDocument.class
|
||||
});
|
||||
|
||||
runWithSparkSession(
|
||||
conf,
|
||||
isSparkSessionManaged,
|
||||
spark -> {
|
||||
final String isLookupUrl = parser.get("isLookupUrl");
|
||||
log.info("isLookupUrl: {}", isLookupUrl);
|
||||
final ISLookupClient isLookup = new ISLookupClient(ISLookupClientFactory.getLookUpService(isLookupUrl));
|
||||
new XmlIndexingJob(spark, inputPath, format, batchSize, outputFormat, outputPath).run(isLookup);
|
||||
});
|
||||
}
|
||||
|
||||
public XmlIndexingJob(SparkSession spark, String inputPath, String format, Integer batchSize,
|
||||
OutputFormat outputFormat,
|
||||
String outputPath) {
|
||||
this.spark = spark;
|
||||
this.inputPath = inputPath;
|
||||
this.format = format;
|
||||
this.batchSize = batchSize;
|
||||
this.outputFormat = outputFormat;
|
||||
this.outputPath = outputPath;
|
||||
}
|
||||
|
||||
public void run(ISLookupClient isLookup) throws ISLookUpException, TransformerException {
|
||||
final String fields = isLookup.getLayoutSource(format);
|
||||
log.info("fields: {}", fields);
|
||||
|
||||
final String xslt = getLayoutTransformer(isLookup);
|
||||
final String xslt = isLookup.getLayoutTransformer();
|
||||
|
||||
final String dsId = getDsId(format, isLookup);
|
||||
final String dsId = isLookup.getDsId(format);
|
||||
log.info("dsId: {}", dsId);
|
||||
|
||||
final String zkHost = getZkHost(isLookup);
|
||||
final String zkHost = isLookup.getZkHost();
|
||||
log.info("zkHost: {}", zkHost);
|
||||
|
||||
final String version = getRecordDatestamp();
|
||||
|
|
@ -88,24 +147,31 @@ public class XmlIndexingJob extends SolrApplication {
|
|||
final String indexRecordXslt = getLayoutTransformer(format, fields, xslt);
|
||||
log.info("indexRecordTransformer {}", indexRecordXslt);
|
||||
|
||||
final SparkConf conf = new SparkConf();
|
||||
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||
|
||||
runWithSparkSession(
|
||||
conf,
|
||||
isSparkSessionManaged,
|
||||
spark -> {
|
||||
final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
|
||||
JavaRDD<SolrInputDocument> docs = sc
|
||||
.sequenceFile(inputPath, Text.class, Text.class)
|
||||
.map(t -> t._2().toString())
|
||||
.map(s -> toIndexRecord(SaxonTransformerFactory.newInstance(indexRecordXslt), s))
|
||||
.map(s -> new StreamingInputDocumentFactory(version, dsId).parseDocument(s));
|
||||
|
||||
RDD<SolrInputDocument> docs = sc
|
||||
.sequenceFile(inputPath, Text.class, Text.class)
|
||||
.map(t -> t._2().toString())
|
||||
.map(s -> toIndexRecord(SaxonTransformerFactory.newInstance(indexRecordXslt), s))
|
||||
.map(s -> new StreamingInputDocumentFactory(version, dsId).parseDocument(s))
|
||||
.rdd();
|
||||
|
||||
final String collection = format + SEPARATOR + LAYOUT + SEPARATOR + INTERPRETATION;
|
||||
SolrSupport.indexDocs(zkHost, collection, batchSize, docs);
|
||||
});
|
||||
switch (outputFormat) {
|
||||
case SOLR:
|
||||
final String collection = ProvisionConstants.getCollectionName(format);
|
||||
SolrSupport.indexDocs(zkHost, collection, batchSize, docs.rdd());
|
||||
break;
|
||||
case HDFS:
|
||||
spark
|
||||
.createDataset(
|
||||
docs.map(s -> new SerializableSolrInputDocument(s)).rdd(),
|
||||
Encoders.kryo(SerializableSolrInputDocument.class))
|
||||
.write()
|
||||
.mode(SaveMode.Overwrite)
|
||||
.parquet(outputPath);
|
||||
break;
|
||||
default:
|
||||
throw new IllegalArgumentException("invalid outputFormat: " + outputFormat);
|
||||
}
|
||||
}
|
||||
|
||||
protected static String toIndexRecord(Transformer tr, final String record) {
|
||||
|
|
@ -151,56 +217,4 @@ public class XmlIndexingJob extends SolrApplication {
|
|||
return new SimpleDateFormat(DATE_FORMAT).format(new Date());
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the list of fields associated to the given MDFormat name
|
||||
*
|
||||
* @param isLookup the ISLookup service stub
|
||||
* @param format the Metadata format name
|
||||
* @return the string representation of the list of fields to be indexed
|
||||
* @throws ISLookUpDocumentNotFoundException
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
private static String getLayoutSource(final ISLookUpService isLookup, final String format)
|
||||
throws ISLookUpDocumentNotFoundException, ISLookUpException {
|
||||
return doLookup(
|
||||
isLookup,
|
||||
String
|
||||
.format(
|
||||
"collection('')//RESOURCE_PROFILE[.//RESOURCE_TYPE/@value = 'MDFormatDSResourceType' and .//NAME='%s']//LAYOUT[@name='%s']",
|
||||
format, LAYOUT));
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the openaireLayoutToRecordStylesheet
|
||||
*
|
||||
* @param isLookup the ISLookup service stub
|
||||
* @return the string representation of the XSLT contained in the transformation rule profile
|
||||
* @throws ISLookUpDocumentNotFoundException
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
private static String getLayoutTransformer(ISLookUpService isLookup) throws ISLookUpException {
|
||||
return doLookup(
|
||||
isLookup,
|
||||
"collection('/db/DRIVER/TransformationRuleDSResources/TransformationRuleDSResourceType')"
|
||||
+ "//RESOURCE_PROFILE[./BODY/CONFIGURATION/SCRIPT/TITLE/text() = 'openaireLayoutToRecordStylesheet']//CODE/node()");
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the IndexDS profile ID associated to the given MDFormat name
|
||||
*
|
||||
* @param format
|
||||
* @param isLookup
|
||||
* @return the IndexDS identifier
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
private static String getDsId(String format, ISLookUpService isLookup) throws ISLookUpException {
|
||||
return doLookup(
|
||||
isLookup,
|
||||
String
|
||||
.format(
|
||||
"collection('/db/DRIVER/IndexDSResources/IndexDSResourceType')"
|
||||
+ "//RESOURCE_PROFILE[./BODY/CONFIGURATION/METADATA_FORMAT/text() = '%s']//RESOURCE_IDENTIFIER/@value/string()",
|
||||
format));
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,23 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision.model;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
import org.apache.solr.common.SolrInputDocument;
|
||||
import org.apache.solr.common.SolrInputField;
|
||||
|
||||
/**
|
||||
* Wrapper class needed to make the SolrInputDocument compatible with the Kryo serialization mechanism.
|
||||
*/
|
||||
public class SerializableSolrInputDocument extends SolrInputDocument {
|
||||
|
||||
public SerializableSolrInputDocument() {
|
||||
super(new HashMap<>());
|
||||
}
|
||||
|
||||
public SerializableSolrInputDocument(Map<String, SolrInputField> fields) {
|
||||
super(fields);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,95 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision.utils;
|
||||
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.oa.provision.ProvisionConstants;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpDocumentNotFoundException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
public class ISLookupClient {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(ISLookupClient.class);
|
||||
|
||||
private ISLookUpService isLookup;
|
||||
|
||||
public ISLookupClient(ISLookUpService isLookup) {
|
||||
this.isLookup = isLookup;
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the list of fields associated to the given MDFormat name
|
||||
*
|
||||
* @param format the Metadata format name
|
||||
* @return the string representation of the list of fields to be indexed
|
||||
* @throws ISLookUpDocumentNotFoundException
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
public String getLayoutSource(final String format)
|
||||
throws ISLookUpDocumentNotFoundException, ISLookUpException {
|
||||
return doLookup(
|
||||
String
|
||||
.format(
|
||||
"collection('')//RESOURCE_PROFILE[.//RESOURCE_TYPE/@value = 'MDFormatDSResourceType' and .//NAME='%s']//LAYOUT[@name='%s']",
|
||||
format, ProvisionConstants.LAYOUT));
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the openaireLayoutToRecordStylesheet
|
||||
*
|
||||
* @return the string representation of the XSLT contained in the transformation rule profile
|
||||
* @throws ISLookUpDocumentNotFoundException
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
public String getLayoutTransformer() throws ISLookUpException {
|
||||
return doLookup(
|
||||
"collection('/db/DRIVER/TransformationRuleDSResources/TransformationRuleDSResourceType')"
|
||||
+ "//RESOURCE_PROFILE[./BODY/CONFIGURATION/SCRIPT/TITLE/text() = 'openaireLayoutToRecordStylesheet']//CODE/node()");
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the IndexDS profile ID associated to the given MDFormat name
|
||||
*
|
||||
* @param format
|
||||
* @return the IndexDS identifier
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
public String getDsId(String format) throws ISLookUpException {
|
||||
return doLookup(
|
||||
String
|
||||
.format(
|
||||
"collection('/db/DRIVER/IndexDSResources/IndexDSResourceType')"
|
||||
+ "//RESOURCE_PROFILE[./BODY/CONFIGURATION/METADATA_FORMAT/text() = '%s']//RESOURCE_IDENTIFIER/@value/string()",
|
||||
format));
|
||||
}
|
||||
|
||||
/**
|
||||
* Method retrieves from the information system the zookeeper quorum of the Solr server
|
||||
*
|
||||
* @return the zookeeper quorum of the Solr server
|
||||
* @throws ISLookUpException
|
||||
*/
|
||||
public String getZkHost() throws ISLookUpException {
|
||||
return doLookup(
|
||||
"for $x in /RESOURCE_PROFILE[.//RESOURCE_TYPE/@value='IndexServiceResourceType'] return $x//PROTOCOL[./@name='solr']/@address/string()");
|
||||
}
|
||||
|
||||
private String doLookup(String xquery) throws ISLookUpException {
|
||||
log.info(String.format("running xquery: %s", xquery));
|
||||
final String res = getIsLookup().getResourceProfileByQuery(xquery);
|
||||
log.info(String.format("got response (100 chars): %s", StringUtils.left(res, 100) + " ..."));
|
||||
return res;
|
||||
}
|
||||
|
||||
public ISLookUpService getIsLookup() {
|
||||
return isLookup;
|
||||
}
|
||||
|
||||
public void setIsLookup(ISLookUpService isLookup) {
|
||||
this.isLookup = isLookup;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -46,11 +46,6 @@ public class StreamingInputDocumentFactory {
|
|||
|
||||
private static final String INDEX_RECORD_ID = INDEX_FIELD_PREFIX + "indexrecordidentifier";
|
||||
|
||||
private static final String outFormat = "yyyy-MM-dd'T'hh:mm:ss'Z'";
|
||||
|
||||
private static final List<String> dateFormats = Arrays
|
||||
.asList("yyyy-MM-dd'T'hh:mm:ss", "yyyy-MM-dd", "dd-MM-yyyy", "dd/MM/yyyy", "yyyy");
|
||||
|
||||
private static final String DEFAULTDNETRESULT = "dnetResult";
|
||||
|
||||
private static final String TARGETFIELDS = "targetFields";
|
||||
|
|
@ -125,13 +120,12 @@ public class StreamingInputDocumentFactory {
|
|||
}
|
||||
|
||||
if (!indexDocument.containsKey(INDEX_RECORD_ID)) {
|
||||
indexDocument.clear();
|
||||
System.err.println("missing indexrecord id:\n" + inputDocument);
|
||||
throw new IllegalStateException("cannot extract record ID from: " + inputDocument);
|
||||
}
|
||||
|
||||
return indexDocument;
|
||||
} catch (XMLStreamException e) {
|
||||
return new SolrInputDocument();
|
||||
throw new IllegalStateException(e);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -901,28 +901,6 @@ public class XmlRecordFactory implements Serializable {
|
|||
if (p.getEcsc39() != null) {
|
||||
metadata.add(XmlSerializationUtils.asXmlElement("ecsc39", p.getEcsc39().getValue()));
|
||||
}
|
||||
if (p.getContactfullname() != null) {
|
||||
metadata
|
||||
.add(
|
||||
XmlSerializationUtils
|
||||
.asXmlElement(
|
||||
"contactfullname", p.getContactfullname().getValue()));
|
||||
}
|
||||
if (p.getContactfax() != null) {
|
||||
metadata
|
||||
.add(
|
||||
XmlSerializationUtils.asXmlElement("contactfax", p.getContactfax().getValue()));
|
||||
}
|
||||
if (p.getContactphone() != null) {
|
||||
metadata
|
||||
.add(
|
||||
XmlSerializationUtils.asXmlElement("contactphone", p.getContactphone().getValue()));
|
||||
}
|
||||
if (p.getContactemail() != null) {
|
||||
metadata
|
||||
.add(
|
||||
XmlSerializationUtils.asXmlElement("contactemail", p.getContactemail().getValue()));
|
||||
}
|
||||
if (p.getSummary() != null) {
|
||||
metadata.add(XmlSerializationUtils.asXmlElement("summary", p.getSummary().getValue()));
|
||||
}
|
||||
|
|
|
|||
|
|
@ -22,5 +22,17 @@
|
|||
"paramLongName": "batchSize",
|
||||
"paramDescription": "size of the batch of documents sent to solr",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName": "of",
|
||||
"paramLongName": "outputFormat",
|
||||
"paramDescription": "decides the job output format, SOLR | HDFS",
|
||||
"paramRequired": false
|
||||
},
|
||||
{
|
||||
"paramName": "op",
|
||||
"paramLongName": "outputPath",
|
||||
"paramDescription": "path on hdfs activating an alternative output for the SolrInputDocuments",
|
||||
"paramRequired": false
|
||||
}
|
||||
]
|
||||
|
|
|
|||
|
|
@ -42,6 +42,7 @@
|
|||
<value>*:*</value>
|
||||
<description>query used in the deleted by query operation</description>
|
||||
</property>
|
||||
|
||||
<property>
|
||||
<name>sparkDriverMemoryForJoining</name>
|
||||
<description>memory for driver process</description>
|
||||
|
|
@ -638,6 +639,8 @@
|
|||
<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
|
||||
<arg>--format</arg><arg>${format}</arg>
|
||||
<arg>--batchSize</arg><arg>${batchSize}</arg>
|
||||
<arg>--outputFormat</arg><arg>${outputFormat}</arg>
|
||||
<arg>--outputPath</arg><arg>${workingDir}/solr_documents</arg>
|
||||
</spark>
|
||||
<ok to="commit_solr_collection"/>
|
||||
<error to="Kill"/>
|
||||
|
|
|
|||
|
|
@ -1,107 +1,18 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision;
|
||||
|
||||
import java.io.File;
|
||||
import java.nio.file.Path;
|
||||
|
||||
import org.apache.solr.client.solrj.SolrResponse;
|
||||
import org.apache.solr.client.solrj.embedded.JettyConfig;
|
||||
import org.apache.solr.client.solrj.impl.CloudSolrClient;
|
||||
import org.apache.solr.client.solrj.impl.XMLResponseParser;
|
||||
import org.apache.solr.client.solrj.request.CollectionAdminRequest;
|
||||
import org.apache.solr.client.solrj.request.ConfigSetAdminRequest;
|
||||
import org.apache.solr.client.solrj.request.QueryRequest;
|
||||
import org.apache.solr.client.solrj.request.RequestWriter;
|
||||
import org.apache.solr.client.solrj.response.CollectionAdminResponse;
|
||||
import org.apache.solr.client.solrj.response.ConfigSetAdminResponse;
|
||||
import org.apache.solr.client.solrj.response.SolrPingResponse;
|
||||
import org.apache.solr.client.solrj.response.UpdateResponse;
|
||||
import org.apache.solr.cloud.MiniSolrCloudCluster;
|
||||
import org.apache.solr.common.params.CollectionParams;
|
||||
import org.apache.solr.common.params.CoreAdminParams;
|
||||
import org.apache.solr.common.params.ModifiableSolrParams;
|
||||
import org.apache.solr.common.util.NamedList;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.Assertions;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.junit.jupiter.api.io.TempDir;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import junit.framework.Assert;
|
||||
|
||||
public class SolrAdminApplicationTest {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(SolrAdminApplicationTest.class);
|
||||
public static final String DEFAULT_COLLECTION = "testCollection";
|
||||
public static final String CONFIG_NAME = "testConfig";
|
||||
|
||||
private static MiniSolrCloudCluster miniCluster;
|
||||
private static CloudSolrClient cloudSolrClient;
|
||||
|
||||
@TempDir
|
||||
public static Path tempDir;
|
||||
|
||||
@BeforeAll
|
||||
public static void setup() throws Exception {
|
||||
|
||||
// random unassigned HTTP port
|
||||
final int jettyPort = 0;
|
||||
|
||||
final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
|
||||
|
||||
// create a MiniSolrCloudCluster instance
|
||||
miniCluster = new MiniSolrCloudCluster(2, tempDir, jettyConfig);
|
||||
|
||||
// Upload Solr configuration directory to ZooKeeper
|
||||
String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/testConfig";
|
||||
File configDir = new File(solrZKConfigDir);
|
||||
|
||||
miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
|
||||
|
||||
// override settings in the solrconfig include
|
||||
System.setProperty("solr.tests.maxBufferedDocs", "100000");
|
||||
System.setProperty("solr.tests.maxIndexingThreads", "-1");
|
||||
System.setProperty("solr.tests.ramBufferSizeMB", "100");
|
||||
|
||||
// use non-test classes so RandomizedRunner isn't necessary
|
||||
System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
|
||||
System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
|
||||
|
||||
cloudSolrClient = miniCluster.getSolrClient();
|
||||
cloudSolrClient.setRequestWriter(new RequestWriter());
|
||||
cloudSolrClient.setParser(new XMLResponseParser());
|
||||
cloudSolrClient.setDefaultCollection(DEFAULT_COLLECTION);
|
||||
cloudSolrClient.connect();
|
||||
|
||||
log.info(new ConfigSetAdminRequest.List().process(cloudSolrClient).toString());
|
||||
log.info(CollectionAdminRequest.ClusterStatus.getClusterStatus().process(cloudSolrClient).toString());
|
||||
|
||||
createCollection(cloudSolrClient, DEFAULT_COLLECTION, 2, 1, CONFIG_NAME);
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void shutDown() throws Exception {
|
||||
miniCluster.shutdown();
|
||||
}
|
||||
|
||||
protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
|
||||
int replicationFactor, String configName) throws Exception {
|
||||
ModifiableSolrParams modParams = new ModifiableSolrParams();
|
||||
modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
|
||||
modParams.set("name", name);
|
||||
modParams.set("numShards", numShards);
|
||||
modParams.set("replicationFactor", replicationFactor);
|
||||
modParams.set("collection.configName", configName);
|
||||
QueryRequest request = new QueryRequest(modParams);
|
||||
request.setPath("/admin/collections");
|
||||
return client.request(request);
|
||||
}
|
||||
public class SolrAdminApplicationTest extends SolrTest {
|
||||
|
||||
@Test
|
||||
public void testPing() throws Exception {
|
||||
SolrPingResponse pingResponse = cloudSolrClient.ping();
|
||||
SolrPingResponse pingResponse = miniCluster.getSolrClient().ping();
|
||||
log.info("pingResponse: '{}'", pingResponse.getStatus());
|
||||
Assert.assertTrue(pingResponse.getStatus() == 0);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,109 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision;
|
||||
|
||||
import java.io.File;
|
||||
import java.nio.file.Path;
|
||||
|
||||
import org.apache.commons.io.FileUtils;
|
||||
import org.apache.solr.client.solrj.embedded.JettyConfig;
|
||||
import org.apache.solr.client.solrj.impl.CloudSolrClient;
|
||||
import org.apache.solr.client.solrj.request.CollectionAdminRequest;
|
||||
import org.apache.solr.client.solrj.request.ConfigSetAdminRequest;
|
||||
import org.apache.solr.client.solrj.request.QueryRequest;
|
||||
import org.apache.solr.cloud.MiniSolrCloudCluster;
|
||||
import org.apache.solr.common.params.CollectionParams;
|
||||
import org.apache.solr.common.params.CoreAdminParams;
|
||||
import org.apache.solr.common.params.ModifiableSolrParams;
|
||||
import org.apache.solr.common.util.NamedList;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.io.TempDir;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
public abstract class SolrTest {
|
||||
|
||||
protected static final Logger log = LoggerFactory.getLogger(SolrTest.class);
|
||||
|
||||
protected static final String FORMAT = "test";
|
||||
protected static final String DEFAULT_COLLECTION = FORMAT + "-index-openaire";
|
||||
protected static final String CONFIG_NAME = "testConfig";
|
||||
|
||||
protected static MiniSolrCloudCluster miniCluster;
|
||||
|
||||
@TempDir
|
||||
public static Path workingDir;
|
||||
|
||||
@BeforeAll
|
||||
public static void setup() throws Exception {
|
||||
|
||||
// random unassigned HTTP port
|
||||
final int jettyPort = 0;
|
||||
final JettyConfig jettyConfig = JettyConfig.builder().setPort(jettyPort).build();
|
||||
|
||||
log.info(String.format("working directory: %s", workingDir.toString()));
|
||||
System.setProperty("solr.log.dir", workingDir.resolve("logs").toString());
|
||||
|
||||
// create a MiniSolrCloudCluster instance
|
||||
miniCluster = new MiniSolrCloudCluster(2, workingDir.resolve("solr"), jettyConfig);
|
||||
|
||||
// Upload Solr configuration directory to ZooKeeper
|
||||
String solrZKConfigDir = "src/test/resources/eu/dnetlib/dhp/oa/provision/solr/conf/testConfig";
|
||||
File configDir = new File(solrZKConfigDir);
|
||||
|
||||
miniCluster.uploadConfigSet(configDir.toPath(), CONFIG_NAME);
|
||||
|
||||
// override settings in the solrconfig include
|
||||
System.setProperty("solr.tests.maxBufferedDocs", "100000");
|
||||
System.setProperty("solr.tests.maxIndexingThreads", "-1");
|
||||
System.setProperty("solr.tests.ramBufferSizeMB", "100");
|
||||
|
||||
// use non-test classes so RandomizedRunner isn't necessary
|
||||
System.setProperty("solr.tests.mergeScheduler", "org.apache.lucene.index.ConcurrentMergeScheduler");
|
||||
System.setProperty("solr.directoryFactory", "solr.RAMDirectoryFactory");
|
||||
System.setProperty("solr.lock.type", "single");
|
||||
|
||||
log.info(new ConfigSetAdminRequest.List().process(miniCluster.getSolrClient()).toString());
|
||||
log
|
||||
.info(
|
||||
CollectionAdminRequest.ClusterStatus
|
||||
.getClusterStatus()
|
||||
.process(miniCluster.getSolrClient())
|
||||
.toString());
|
||||
|
||||
NamedList<Object> res = createCollection(
|
||||
miniCluster.getSolrClient(), DEFAULT_COLLECTION, 4, 2, 20, CONFIG_NAME);
|
||||
res.forEach(o -> log.info(o.toString()));
|
||||
|
||||
miniCluster.getSolrClient().setDefaultCollection(DEFAULT_COLLECTION);
|
||||
|
||||
log
|
||||
.info(
|
||||
CollectionAdminRequest.ClusterStatus
|
||||
.getClusterStatus()
|
||||
.process(miniCluster.getSolrClient())
|
||||
.toString());
|
||||
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void shutDown() throws Exception {
|
||||
miniCluster.shutdown();
|
||||
FileUtils.deleteDirectory(workingDir.toFile());
|
||||
}
|
||||
|
||||
protected static NamedList<Object> createCollection(CloudSolrClient client, String name, int numShards,
|
||||
int replicationFactor, int maxShardsPerNode, String configName) throws Exception {
|
||||
ModifiableSolrParams modParams = new ModifiableSolrParams();
|
||||
modParams.set(CoreAdminParams.ACTION, CollectionParams.CollectionAction.CREATE.name());
|
||||
modParams.set("name", name);
|
||||
modParams.set("numShards", numShards);
|
||||
modParams.set("replicationFactor", replicationFactor);
|
||||
modParams.set("collection.configName", configName);
|
||||
modParams.set("maxShardsPerNode", maxShardsPerNode);
|
||||
QueryRequest request = new QueryRequest(modParams);
|
||||
request.setPath("/admin/collections");
|
||||
return client.request(request);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,149 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.provision;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.StringReader;
|
||||
import java.net.URI;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.hadoop.io.Text;
|
||||
import org.apache.solr.client.solrj.SolrQuery;
|
||||
import org.apache.solr.client.solrj.response.QueryResponse;
|
||||
import org.apache.solr.common.SolrInputField;
|
||||
import org.apache.solr.common.params.CommonParams;
|
||||
import org.apache.spark.SparkConf;
|
||||
import org.apache.spark.api.java.JavaPairRDD;
|
||||
import org.apache.spark.api.java.JavaSparkContext;
|
||||
import org.apache.spark.api.java.function.MapFunction;
|
||||
import org.apache.spark.sql.Dataset;
|
||||
import org.apache.spark.sql.Encoders;
|
||||
import org.apache.spark.sql.SparkSession;
|
||||
import org.dom4j.io.SAXReader;
|
||||
import org.junit.jupiter.api.*;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.mockito.Mock;
|
||||
import org.mockito.Mockito;
|
||||
import org.mockito.junit.jupiter.MockitoExtension;
|
||||
|
||||
import eu.dnetlib.dhp.oa.provision.model.SerializableSolrInputDocument;
|
||||
import eu.dnetlib.dhp.oa.provision.utils.ISLookupClient;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpException;
|
||||
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
|
||||
|
||||
@ExtendWith(MockitoExtension.class)
|
||||
public class XmlIndexingJobTest extends SolrTest {
|
||||
|
||||
protected static SparkSession spark;
|
||||
|
||||
private static final Integer batchSize = 100;
|
||||
|
||||
@Mock
|
||||
private ISLookUpService isLookUpService;
|
||||
|
||||
@Mock
|
||||
private ISLookupClient isLookupClient;
|
||||
|
||||
@BeforeEach
|
||||
public void prepareMocks() throws ISLookUpException, IOException {
|
||||
isLookupClient.setIsLookup(isLookUpService);
|
||||
|
||||
int solrPort = URI.create("http://" + miniCluster.getZkClient().getZkServerAddress()).getPort();
|
||||
|
||||
Mockito
|
||||
.when(isLookupClient.getDsId(Mockito.anyString()))
|
||||
.thenReturn("313f0381-23b6-466f-a0b8-c72a9679ac4b_SW5kZXhEU1Jlc291cmNlcy9JbmRleERTUmVzb3VyY2VUeXBl");
|
||||
Mockito.when(isLookupClient.getZkHost()).thenReturn(String.format("127.0.0.1:%s/solr", solrPort));
|
||||
Mockito
|
||||
.when(isLookupClient.getLayoutSource(Mockito.anyString()))
|
||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("fields.xml")));
|
||||
Mockito
|
||||
.when(isLookupClient.getLayoutTransformer())
|
||||
.thenReturn(IOUtils.toString(getClass().getResourceAsStream("layoutToRecordTransformer.xsl")));
|
||||
}
|
||||
|
||||
@BeforeAll
|
||||
public static void before() {
|
||||
|
||||
SparkConf conf = new SparkConf();
|
||||
conf.setAppName(XmlIndexingJobTest.class.getSimpleName());
|
||||
conf.registerKryoClasses(new Class[] {
|
||||
SerializableSolrInputDocument.class
|
||||
});
|
||||
|
||||
conf.setMaster("local[1]");
|
||||
conf.set("spark.driver.host", "localhost");
|
||||
conf.set("hive.metastore.local", "true");
|
||||
conf.set("spark.ui.enabled", "false");
|
||||
conf.set("spark.sql.warehouse.dir", workingDir.resolve("spark").toString());
|
||||
|
||||
spark = SparkSession
|
||||
.builder()
|
||||
.appName(XmlIndexingJobTest.class.getSimpleName())
|
||||
.config(conf)
|
||||
.getOrCreate();
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void tearDown() {
|
||||
spark.stop();
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testXmlIndexingJob_onSolr() throws Exception {
|
||||
|
||||
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
||||
|
||||
long nRecord = JavaSparkContext
|
||||
.fromSparkContext(spark.sparkContext())
|
||||
.sequenceFile(inputPath, Text.class, Text.class)
|
||||
.count();
|
||||
|
||||
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.SOLR, null)
|
||||
.run(isLookupClient);
|
||||
|
||||
Assertions.assertEquals(0, miniCluster.getSolrClient().commit().getStatus());
|
||||
|
||||
QueryResponse rsp = miniCluster.getSolrClient().query(new SolrQuery().add(CommonParams.Q, "*:*"));
|
||||
|
||||
Assertions
|
||||
.assertEquals(
|
||||
nRecord, rsp.getResults().getNumFound(),
|
||||
"the number of indexed records should be equal to the number of input records");
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testXmlIndexingJob_saveOnHDFS() throws Exception {
|
||||
final String ID_XPATH = "//header/*[local-name()='objIdentifier']";
|
||||
|
||||
String inputPath = "src/test/resources/eu/dnetlib/dhp/oa/provision/xml";
|
||||
|
||||
final JavaPairRDD<Text, Text> xmlRecords = JavaSparkContext
|
||||
.fromSparkContext(spark.sparkContext())
|
||||
.sequenceFile(inputPath, Text.class, Text.class);
|
||||
long nRecord = xmlRecords.count();
|
||||
long xmlIdUnique = xmlRecords
|
||||
.map(t -> t._2().toString())
|
||||
.map(s -> new SAXReader().read(new StringReader(s)).valueOf(ID_XPATH))
|
||||
.distinct()
|
||||
.count();
|
||||
Assertions.assertEquals(nRecord, xmlIdUnique, "IDs should be unique among input records");
|
||||
|
||||
final String outputPath = workingDir.resolve("outputPath").toAbsolutePath().toString();
|
||||
new XmlIndexingJob(spark, inputPath, FORMAT, batchSize, XmlIndexingJob.OutputFormat.HDFS, outputPath)
|
||||
.run(isLookupClient);
|
||||
|
||||
final Dataset<SerializableSolrInputDocument> solrDocs = spark
|
||||
.read()
|
||||
.load(outputPath)
|
||||
.as(Encoders.kryo(SerializableSolrInputDocument.class));
|
||||
long docIdUnique = solrDocs.map((MapFunction<SerializableSolrInputDocument, String>) doc -> {
|
||||
final SolrInputField id = doc.getField("__indexrecordidentifier");
|
||||
return id.getFirstValue().toString();
|
||||
}, Encoders.STRING())
|
||||
.distinct()
|
||||
.count();
|
||||
Assertions.assertEquals(xmlIdUnique, docIdUnique, "IDs should be unique among the output records");
|
||||
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -105,7 +105,7 @@
|
|||
<FIELD indexable="true" name="relorganizationname" result="false" stat="false" xpath="distinct-values(//*[local-name()='entity']/*//rel[./to/@type='organization']/legalname)"/>
|
||||
<FIELD indexable="true" name="relorganizationshortname" result="false" stat="false" xpath="distinct-values(//*[local-name()='entity']/*//rel[./to/@type='organization']/legalshortname)"/>
|
||||
<FIELD indexable="true" name="relresultid" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/to[@type='result'])"/>
|
||||
<FIELD indexable="true" name="relresulttype" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/resulttype/@classid)"/>
|
||||
<FIELD indexable="true" name="relresulttype" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/to/@type)"/>
|
||||
<FIELD indexable="true" name="relclass" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/to/@class)"/>
|
||||
<FIELD indexable="true" name="relfundinglevel0_id" result="false" stat="false" tokenizable="false" xpath="//*[local-name()='entity']//rel/funding/funding_level_0"/>
|
||||
<FIELD indexable="true" name="relfundinglevel0_name" result="false" stat="false" tokenizable="false" xpath="//*[local-name()='entity']//rel/funding/funding_level_0/@name/string()"/>
|
||||
|
|
@ -123,7 +123,8 @@
|
|||
<FIELD indexable="true" name="relfundername" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']//rel/funding/funder/@name)"/>
|
||||
<FIELD indexable="true" name="relfunderjurisdiction" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']//rel/funding/funder/@jurisdiction)"/><!-- Collected from of the related entity. Available for result-result relationships -->
|
||||
<FIELD indexable="true" name="relcollectedfromid" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/collectedfrom/@id)"/>
|
||||
<FIELD indexable="true" name="relcollectedfromname" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/collectedfrom/@name)"/><!-- COMMON FIELDS -->
|
||||
<FIELD indexable="true" name="relcollectedfromname" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*//rel/collectedfrom/@name)"/>
|
||||
<FIELD indexable="true" name="semrelid" result="false" stat="false" tokenizable="false" value="concat(./to/text(), '||', ./to/@class/string())" xpath="//*[local-name()='entity']//rel"/><!-- COMMON FIELDS -->
|
||||
<FIELD indexable="true" multivalued="false" name="dateofcollection" result="false" stat="false" type="pdate" value="//header/*[local-name()='dateOfCollection']"/>
|
||||
<FIELD indexable="true" name="collectedfrom" result="false" stat="false" tokenizable="false" value="distinct-values(concat(./@id, '||', ./@name))" xpath="//*[local-name()='entity']/*/*[local-name()='collectedfrom'] | //*[local-name()='entity']/*//*[local-name() = 'instance']/*[local-name()='collectedfrom']"/>
|
||||
<FIELD indexable="true" name="collectedfromdatasourceid" result="false" stat="false" tokenizable="false" xpath="distinct-values(//*[local-name()='entity']/*/*[local-name()='collectedfrom']/@id | //*[local-name()='entity']/*//*[local-name() = 'instance']/*[local-name()='collectedfrom']/@id)"/>
|
||||
|
|
|
|||
|
|
@ -0,0 +1,31 @@
|
|||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
||||
-->
|
||||
|
||||
<!-- If this file is found in the config directory, it will only be
|
||||
loaded once at startup. If it is found in Solr's data
|
||||
directory, it will be re-loaded every commit.
|
||||
|
||||
See http://wiki.apache.org/solr/QueryElevationComponent for more info
|
||||
|
||||
-->
|
||||
<elevate>
|
||||
<!-- Query elevation examples
|
||||
<query text="foo bar">
|
||||
<doc id="1" />
|
||||
<doc id="2" />
|
||||
<doc id="3" />
|
||||
</query>
|
||||
|
||||
for use with techproducts example
|
||||
|
||||
<query text="ipod">
|
||||
<doc id="MA147LL/A" /> put the actual ipod at the top
|
||||
<doc id="IW-02" exclude="true" /> exclude this cable
|
||||
</query>
|
||||
-->
|
||||
|
||||
</elevate>
|
||||
File diff suppressed because it is too large
Load Diff
|
|
@ -83,6 +83,7 @@
|
|||
|
||||
<lib dir="${solr.install.dir:../../../..}/contrib/velocity/lib" regex=".*\.jar" />
|
||||
<lib dir="${solr.install.dir:../../../..}/dist/" regex="solr-velocity-\d.*\.jar" />
|
||||
|
||||
<!-- an exact 'path' can be used instead of a 'dir' to specify a
|
||||
specific jar file. This will cause a serious error to be logged
|
||||
if it can't be loaded.
|
||||
|
|
@ -112,7 +113,8 @@
|
|||
One can force a particular implementation via solr.MMapDirectoryFactory,
|
||||
solr.NIOFSDirectoryFactory, or solr.SimpleFSDirectoryFactory.
|
||||
|
||||
solr.RAMDirectoryFactory is memory based and not persistent.
|
||||
solr.RAMDirectoryFactory is memory based, not
|
||||
persistent, and doesn't work with replication.
|
||||
-->
|
||||
<directoryFactory name="DirectoryFactory"
|
||||
class="${solr.directoryFactory:solr.NRTCachingDirectoryFactory}"/>
|
||||
|
|
@ -204,7 +206,7 @@
|
|||
More details on the nuances of each LockFactory...
|
||||
http://wiki.apache.org/lucene-java/AvailableLockFactories
|
||||
-->
|
||||
<lockType>${solr.lock.type:single}</lockType>
|
||||
<lockType>${solr.lock.type:native}</lockType>
|
||||
|
||||
<!-- Commit Deletion Policy
|
||||
Custom deletion policies can be specified here. The class must
|
||||
|
|
@ -331,6 +333,29 @@
|
|||
postCommit - fired after every commit or optimize command
|
||||
postOptimize - fired after every optimize command
|
||||
-->
|
||||
<!-- The RunExecutableListener executes an external command from a
|
||||
hook such as postCommit or postOptimize.
|
||||
|
||||
exe - the name of the executable to run
|
||||
dir - dir to use as the current working directory. (default=".")
|
||||
wait - the calling thread waits until the executable returns.
|
||||
(default="true")
|
||||
args - the arguments to pass to the program. (default is none)
|
||||
env - environment variables to set. (default is none)
|
||||
-->
|
||||
<!-- This example shows how RunExecutableListener could be used
|
||||
with the script based replication...
|
||||
http://wiki.apache.org/solr/CollectionDistribution
|
||||
-->
|
||||
<!--
|
||||
<listener event="postCommit" class="solr.RunExecutableListener">
|
||||
<str name="exe">solr/bin/snapshooter</str>
|
||||
<str name="dir">.</str>
|
||||
<bool name="wait">true</bool>
|
||||
<arr name="args"> <str>arg1</str> <str>arg2</str> </arr>
|
||||
<arr name="env"> <str>MYVAR=val1</str> </arr>
|
||||
</listener>
|
||||
-->
|
||||
|
||||
</updateHandler>
|
||||
|
||||
|
|
@ -366,14 +391,22 @@
|
|||
Query section - these settings control query time things like caches
|
||||
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -->
|
||||
<query>
|
||||
<!-- Max Boolean Clauses
|
||||
|
||||
Maximum number of clauses in each BooleanQuery, an exception
|
||||
is thrown if exceeded.
|
||||
|
||||
** WARNING **
|
||||
|
||||
This option actually modifies a global Lucene property that
|
||||
will affect all SolrCores. If multiple solrconfig.xml files
|
||||
disagree on this property, the value at any given moment will
|
||||
be based on the last SolrCore to be initialized.
|
||||
|
||||
<!-- Maximum number of clauses in each BooleanQuery, an exception
|
||||
is thrown if exceeded. It is safe to increase or remove this setting,
|
||||
since it is purely an arbitrary limit to try and catch user errors where
|
||||
large boolean queries may not be the best implementation choice.
|
||||
-->
|
||||
<maxBooleanClauses>1024</maxBooleanClauses>
|
||||
|
||||
|
||||
<!-- Solr Internal Query Caches
|
||||
|
||||
There are two implementations of cache available for Solr,
|
||||
|
|
@ -575,8 +608,21 @@
|
|||
This section contains instructions for how the SolrDispatchFilter
|
||||
should behave when processing requests for this SolrCore.
|
||||
|
||||
handleSelect is a legacy option that affects the behavior of requests
|
||||
such as /select?qt=XXX
|
||||
|
||||
handleSelect="true" will cause the SolrDispatchFilter to process
|
||||
the request and dispatch the query to a handler specified by the
|
||||
"qt" param, assuming "/select" isn't already registered.
|
||||
|
||||
handleSelect="false" will cause the SolrDispatchFilter to
|
||||
ignore "/select" requests, resulting in a 404 unless a handler
|
||||
is explicitly registered with the name "/select"
|
||||
|
||||
handleSelect="true" is not recommended for new users, but is the default
|
||||
for backwards compatibility
|
||||
-->
|
||||
<requestDispatcher>
|
||||
<requestDispatcher handleSelect="false" >
|
||||
<!-- Request Parsing
|
||||
|
||||
These settings indicate how Solr Requests may be parsed, and
|
||||
|
|
@ -602,14 +648,15 @@
|
|||
plugins.
|
||||
|
||||
*** WARNING ***
|
||||
Before enabling remote streaming, you should make sure your
|
||||
system has authentication enabled.
|
||||
The settings below authorize Solr to fetch remote files, You
|
||||
should make sure your system has some authentication before
|
||||
using enableRemoteStreaming="true"
|
||||
|
||||
<requestParsers enableRemoteStreaming="false"
|
||||
multipartUploadLimitInKB="-1"
|
||||
formdataUploadLimitInKB="-1"
|
||||
addHttpRequestToContext="false"/>
|
||||
-->
|
||||
<requestParsers enableRemoteStreaming="true"
|
||||
multipartUploadLimitInKB="2048000"
|
||||
formdataUploadLimitInKB="2048"
|
||||
addHttpRequestToContext="false"/>
|
||||
|
||||
<!-- HTTP Caching
|
||||
|
||||
|
|
@ -673,6 +720,14 @@
|
|||
Incoming queries will be dispatched to a specific handler by name
|
||||
based on the path specified in the request.
|
||||
|
||||
Legacy behavior: If the request path uses "/select" but no Request
|
||||
Handler has that name, and if handleSelect="true" has been specified in
|
||||
the requestDispatcher, then the Request Handler is dispatched based on
|
||||
the qt parameter. Handlers without a leading '/' are accessed this way
|
||||
like so: http://host/app/[core/]select?qt=name If no qt is
|
||||
given, then the requestHandler that declares default="true" will be
|
||||
used or the one named "standard".
|
||||
|
||||
If a Request Handler is declared with startup="lazy", then it will
|
||||
not be initialized until the first request that uses it.
|
||||
|
||||
|
|
@ -692,13 +747,9 @@
|
|||
-->
|
||||
<lst name="defaults">
|
||||
<str name="echoParams">explicit</str>
|
||||
<str name="q.op">AND</str>
|
||||
<int name="rows">10</int>
|
||||
<!-- Default search field
|
||||
<str name="df">text</str>
|
||||
-->
|
||||
<!-- Change from JSON to XML format (the default prior to Solr 7.0)
|
||||
<str name="wt">xml</str>
|
||||
-->
|
||||
<!-- <str name="df">text</str> -->
|
||||
</lst>
|
||||
<!-- In addition to defaults, "appends" params can be specified
|
||||
to identify values which should be appended to the list of
|
||||
|
|
@ -781,10 +832,18 @@
|
|||
|
||||
<initParams path="/update/**,/query,/select,/tvrh,/elevate,/spell,/browse">
|
||||
<lst name="defaults">
|
||||
<str name="df">_text_</str>
|
||||
<str name="df">__all</str>
|
||||
</lst>
|
||||
</initParams>
|
||||
|
||||
<!-- This enabled schemaless mode
|
||||
<initParams path="/update/**">
|
||||
<lst name="defaults">
|
||||
<str name="update.chain">add-unknown-fields-to-the-schema</str>
|
||||
</lst>
|
||||
</initParams>
|
||||
-->
|
||||
|
||||
<!-- Solr Cell Update Request Handler
|
||||
|
||||
http://wiki.apache.org/solr/ExtractingRequestHandler
|
||||
|
|
@ -796,10 +855,9 @@
|
|||
<lst name="defaults">
|
||||
<str name="lowernames">true</str>
|
||||
<str name="fmap.meta">ignored_</str>
|
||||
<str name="fmap.content">_text_</str>
|
||||
<str name="fmap.content">__all</str>
|
||||
</lst>
|
||||
</requestHandler>
|
||||
|
||||
<!-- Search Components
|
||||
|
||||
Search components are registered to SolrCore and used by
|
||||
|
|
@ -861,7 +919,7 @@
|
|||
<!-- a spellchecker built from a field of the main index -->
|
||||
<lst name="spellchecker">
|
||||
<str name="name">default</str>
|
||||
<str name="field">_text_</str>
|
||||
<str name="field">__all</str>
|
||||
<str name="classname">solr.DirectSolrSpellChecker</str>
|
||||
<!-- the spellcheck distance measure used, the default is the internal levenshtein -->
|
||||
<str name="distanceMeasure">internal</str>
|
||||
|
|
@ -986,6 +1044,7 @@
|
|||
<searchComponent name="elevator" class="solr.QueryElevationComponent" >
|
||||
<!-- pick a fieldType to analyze queries -->
|
||||
<str name="queryFieldType">string</str>
|
||||
<str name="config-file">elevate.xml</str>
|
||||
</searchComponent>
|
||||
|
||||
<!-- A request handler for demonstrating the elevator component -->
|
||||
|
|
@ -1116,81 +1175,70 @@
|
|||
|
||||
<!-- Add unknown fields to the schema
|
||||
|
||||
Field type guessing update processors that will
|
||||
An example field type guessing update processor that will
|
||||
attempt to parse string-typed field values as Booleans, Longs,
|
||||
Doubles, or Dates, and then add schema fields with the guessed
|
||||
field types. Text content will be indexed as "text_general" as
|
||||
well as a copy to a plain string version in *_str.
|
||||
field types.
|
||||
|
||||
These require that the schema is both managed and mutable, by
|
||||
This requires that the schema is both managed and mutable, by
|
||||
declaring schemaFactory as ManagedIndexSchemaFactory, with
|
||||
mutable specified as true.
|
||||
|
||||
See http://wiki.apache.org/solr/GuessingFieldTypes
|
||||
-->
|
||||
<updateProcessor class="solr.UUIDUpdateProcessorFactory" name="uuid"/>
|
||||
<updateProcessor class="solr.RemoveBlankFieldUpdateProcessorFactory" name="remove-blank"/>
|
||||
<updateProcessor class="solr.FieldNameMutatingUpdateProcessorFactory" name="field-name-mutating">
|
||||
<str name="pattern">[^\w-\.]</str>
|
||||
<str name="replacement">_</str>
|
||||
</updateProcessor>
|
||||
<updateProcessor class="solr.ParseBooleanFieldUpdateProcessorFactory" name="parse-boolean"/>
|
||||
<updateProcessor class="solr.ParseLongFieldUpdateProcessorFactory" name="parse-long"/>
|
||||
<updateProcessor class="solr.ParseDoubleFieldUpdateProcessorFactory" name="parse-double"/>
|
||||
<updateProcessor class="solr.ParseDateFieldUpdateProcessorFactory" name="parse-date">
|
||||
<arr name="format">
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss.SSSZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss,SSSZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss.SSS</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss,SSS</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ssZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss</str>
|
||||
<str>yyyy-MM-dd'T'HH:mmZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss.SSSZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss,SSSZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss.SSS</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss,SSS</str>
|
||||
<str>yyyy-MM-dd HH:mm:ssZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss</str>
|
||||
<str>yyyy-MM-dd HH:mmZ</str>
|
||||
<str>yyyy-MM-dd HH:mm</str>
|
||||
<str>yyyy-MM-dd</str>
|
||||
</arr>
|
||||
</updateProcessor>
|
||||
<updateProcessor class="solr.AddSchemaFieldsUpdateProcessorFactory" name="add-schema-fields">
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.String</str>
|
||||
<str name="fieldType">text_general</str>
|
||||
<lst name="copyField">
|
||||
<str name="dest">*_str</str>
|
||||
<int name="maxChars">256</int>
|
||||
<updateRequestProcessorChain name="add-unknown-fields-to-the-schema">
|
||||
<!-- UUIDUpdateProcessorFactory will generate an id if none is present in the incoming document -->
|
||||
<processor class="solr.UUIDUpdateProcessorFactory" />
|
||||
<processor class="solr.RemoveBlankFieldUpdateProcessorFactory"/>
|
||||
<processor class="solr.FieldNameMutatingUpdateProcessorFactory">
|
||||
<str name="pattern">[^\w-\.]</str>
|
||||
<str name="replacement">_</str>
|
||||
</processor>
|
||||
<processor class="solr.ParseBooleanFieldUpdateProcessorFactory"/>
|
||||
<processor class="solr.ParseLongFieldUpdateProcessorFactory"/>
|
||||
<processor class="solr.ParseDoubleFieldUpdateProcessorFactory"/>
|
||||
<processor class="solr.ParseDateFieldUpdateProcessorFactory">
|
||||
<arr name="format">
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss.SSSZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss,SSSZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss.SSS</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss,SSS</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ssZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm:ss</str>
|
||||
<str>yyyy-MM-dd'T'HH:mmZ</str>
|
||||
<str>yyyy-MM-dd'T'HH:mm</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss.SSSZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss,SSSZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss.SSS</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss,SSS</str>
|
||||
<str>yyyy-MM-dd HH:mm:ssZ</str>
|
||||
<str>yyyy-MM-dd HH:mm:ss</str>
|
||||
<str>yyyy-MM-dd HH:mmZ</str>
|
||||
<str>yyyy-MM-dd HH:mm</str>
|
||||
<str>yyyy-MM-dd</str>
|
||||
</arr>
|
||||
</processor>
|
||||
<processor class="solr.AddSchemaFieldsUpdateProcessorFactory">
|
||||
<str name="defaultFieldType">strings</str>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Boolean</str>
|
||||
<str name="fieldType">booleans</str>
|
||||
</lst>
|
||||
<!-- Use as default mapping instead of defaultFieldType -->
|
||||
<bool name="default">true</bool>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Boolean</str>
|
||||
<str name="fieldType">booleans</str>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.util.Date</str>
|
||||
<str name="fieldType">pdates</str>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Long</str>
|
||||
<str name="valueClass">java.lang.Integer</str>
|
||||
<str name="fieldType">plongs</str>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Number</str>
|
||||
<str name="fieldType">pdoubles</str>
|
||||
</lst>
|
||||
</updateProcessor>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.util.Date</str>
|
||||
<str name="fieldType">tdates</str>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Long</str>
|
||||
<str name="valueClass">java.lang.Integer</str>
|
||||
<str name="fieldType">tlongs</str>
|
||||
</lst>
|
||||
<lst name="typeMapping">
|
||||
<str name="valueClass">java.lang.Number</str>
|
||||
<str name="fieldType">tdoubles</str>
|
||||
</lst>
|
||||
</processor>
|
||||
|
||||
<!-- The update.autoCreateFields property can be turned to false to disable schemaless mode -->
|
||||
<updateRequestProcessorChain name="add-unknown-fields-to-the-schema" default="${update.autoCreateFields:true}"
|
||||
processor="uuid,remove-blank,field-name-mutating,parse-boolean,parse-long,parse-double,parse-date,add-schema-fields">
|
||||
<processor class="solr.LogUpdateProcessorFactory"/>
|
||||
<processor class="solr.DistributedUpdateProcessorFactory"/>
|
||||
<processor class="solr.RunUpdateProcessorFactory"/>
|
||||
|
|
@ -1313,7 +1361,7 @@
|
|||
|
||||
<!-- Query Parsers
|
||||
|
||||
https://lucene.apache.org/solr/guide/query-syntax-and-parsing.html
|
||||
https://cwiki.apache.org/confluence/display/solr/Query+Syntax+and+Parsing
|
||||
|
||||
Multiple QParserPlugins can be registered by name, and then
|
||||
used in either the "defType" param for the QueryComponent (used
|
||||
|
|
@ -1361,4 +1409,4 @@
|
|||
EditorialMarkerFactory will do exactly that:
|
||||
<transformer name="qecBooster" class="org.apache.solr.response.transform.EditorialMarkerFactory" />
|
||||
-->
|
||||
</config>
|
||||
</config>
|
||||
Binary file not shown.
|
|
@ -46,7 +46,7 @@
|
|||
</configuration>
|
||||
</global>
|
||||
|
||||
<start to="Step18"/>
|
||||
<start to="Step1"/>
|
||||
|
||||
<kill name="Kill">
|
||||
<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
|
||||
|
|
|
|||
Loading…
Reference in New Issue