miriam.baglioni
/
dnet-hadoop
forked from D-Net/dnet-hadoop
2
0
Fork 0
Code Issues 2 Pull Requests Releases Wiki Activity

merge branch with master

This commit is contained in:
Miriam Baglioni 2021-03-30 16:27:23 +02:00
parent 330343937c 4b6e514f02
commit 4632795f25
28 changed files with 1119 additions and 485 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

9
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/common/ModelSupport.java
View File

@ -5,6 +5,9 @@ import static com.google.common.base.Preconditions.checkArgument;
import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.time.Instant;
import java.time.format.DateTimeFormatter;
import java.time.temporal.TemporalAccessor;
import java.util.Date;
import java.util.Map;
import java.util.Objects;
@ -477,8 +480,6 @@ public class ModelSupport {
return ((OafEntity) t).getId();
}
public static final String ISO8601FORMAT = "yyyy-MM-dd'T'HH:mm:ssZ";
public static String oldest(String dateA, String dateB) throws ParseException {
if (StringUtils.isBlank(dateA)) {
@ -489,8 +490,8 @@ public class ModelSupport {
}
if (StringUtils.isNotBlank(dateA) && StringUtils.isNotBlank(dateB)) {
final Date a = new SimpleDateFormat(ISO8601FORMAT).parse(dateA);
final Date b = new SimpleDateFormat(ISO8601FORMAT).parse(dateB);
final Date a = Date.from(Instant.from(DateTimeFormatter.ISO_INSTANT.parse(dateA)));
final Date b = Date.from(Instant.from(DateTimeFormatter.ISO_INSTANT.parse(dateB)));
return a.before(b) ? dateA : dateB;
} else {

5
dhp-schemas/src/test/java/eu/dnetlib/dhp/schema/oaf/MergeTest.java
View File

@ -85,6 +85,11 @@ public class MergeTest {
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
a = createRel(true, "2016-05-07T12:41:19.202Z");
b = createRel(true, "2016-04-05T12:41:19.202Z");
a.mergeFrom(b);
assertEquals("2016-04-05T12:41:19.202Z", a.getValidationDate());
}
@Test

18
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/finalizedb.sh Normal file
View File

@ -0,0 +1,18 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
export SOURCE=$1
export SHADOW=$2
echo "Updating shadow database"
impala-shell -d ${SOURCE} -q "invalidate metadata"
impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/^\(.*\)/compute stats ${SOURCE}.\1;/" | impala-shell -c -f -
impala-shell -q "create database if not exists ${SHADOW}"
impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -c -f -
impala-shell -d ${SOURCE} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${SOURCE}.\1;/" | impala-shell -c -f -
echo "Shadow db ready!"

18
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/impala-shell.sh
View File

@ -1,18 +0,0 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
echo "Getting file from " $3
hdfs dfs -copyToLocal $3
echo "Running impala shell make the new database visible"
impala-shell -q "INVALIDATE METADATA;"
echo "Running impala shell to compute new table stats"
impala-shell -d $1 -f $2
echo "Impala shell finished"
rm $2

25
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/monitor.sh Normal file
View File

@ -0,0 +1,25 @@
export PYTHON_EGG_CACHE=/home/$(whoami)/.python-eggs
export link_folder=/tmp/impala-shell-python-egg-cache-$(whoami)
if ! [ -L $link_folder ]
then
rm -Rf "$link_folder"
ln -sfn ${PYTHON_EGG_CACHE}${link_folder} ${link_folder}
fi
export SOURCE=$1
export TARGET=$2
export SHADOW=$3
export SCRIPT_PATH=$4
echo "Getting file from " $4
hdfs dfs -copyToLocal $4
echo "Creating monitor database"
cat step20-createMonitorDB.sql | sed s/SOURCE/$1/g | sed s/TARGET/$2/g1 | impala-shell -f -
echo "Impala shell finished"
echo "Updating shadow monitor database"
impala-shell -q "create database if not exists ${SHADOW}"
impala-shell -d ${SHADOW} -q "show tables" --delimited | sed "s/^/drop view if exists ${SHADOW}./" | sed "s/$/;/" | impala-shell -f -
impala-shell -d ${TARGET} -q "show tables" --delimited | sed "s/\(.*\)/create view ${SHADOW}.\1 as select * from ${TARGET}.\1;/" | impala-shell -f -
echo "Shadow db ready!"

45
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step10.sql
View File

@ -3,14 +3,37 @@
-- Tables/views from external tables/views (Fundref, Country, CountyGDP, roarmap, rndexpediture)
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS SELECT * FROM ${external_stats_db_name}.fundref;
CREATE OR REPLACE VIEW ${stats_db_name}.country AS SELECT * FROM ${external_stats_db_name}.country;
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS SELECT * FROM ${external_stats_db_name}.countrygdp;
CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS SELECT * FROM ${external_stats_db_name}.roarmap;
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS SELECT * FROM ${external_stats_db_name}.rndexpediture;
CREATE OR REPLACE VIEW ${stats_db_name}.context AS SELECT * FROM ${external_stats_db_name}.context;
CREATE OR REPLACE VIEW ${stats_db_name}.category AS SELECT * FROM ${external_stats_db_name}.category;
CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_stats_db_name}.concept;
CREATE OR REPLACE VIEW ${stats_db_name}.fundref AS
SELECT *
FROM ${external_stats_db_name}.fundref;
CREATE OR REPLACE VIEW ${stats_db_name}.country AS
SELECT *
FROM ${external_stats_db_name}.country;
CREATE OR REPLACE VIEW ${stats_db_name}.countrygdp AS
SELECT *
FROM ${external_stats_db_name}.countrygdp;
CREATE OR REPLACE VIEW ${stats_db_name}.roarmap AS
SELECT *
FROM ${external_stats_db_name}.roarmap;
CREATE OR REPLACE VIEW ${stats_db_name}.rndexpediture AS
SELECT *
FROM ${external_stats_db_name}.rndexpediture;
CREATE OR REPLACE VIEW ${stats_db_name}.context AS
SELECT *
FROM ${external_stats_db_name}.context;
CREATE OR REPLACE VIEW ${stats_db_name}.category AS
SELECT *
FROM ${external_stats_db_name}.category;
CREATE OR REPLACE VIEW ${stats_db_name}.concept AS
SELECT *
FROM ${external_stats_db_name}.concept;
------------------------------------------------------------------------------------------------
@ -18,4 +41,8 @@ CREATE OR REPLACE VIEW ${stats_db_name}.concept AS SELECT * FROM ${external_sta
-- Creation date of the database
------------------------------------------------------------------------------------------------
------------------------------------------------------------------------------------------------
create table ${stats_db_name}.creation_date as select date_format(current_date(), 'dd-MM-yyyy') as date;
create table ${stats_db_name}.creation_date as
select date_format(current_date(), 'dd-MM-yyyy') as date;
--
-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.creation_date COMPUTE STATISTICS FOR COLUMNS;

128
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step11.sql
View File

@ -5,40 +5,114 @@
----------------------------------------------------------------
--Datasource temporary table updates
UPDATE ${stats_db_name}.datasource_tmp SET harvested='true' WHERE datasource_tmp.id IN (SELECT DISTINCT d.id FROM ${stats_db_name}.datasource_tmp d, ${stats_db_name}.result_datasources rd WHERE d.id=rd.datasource);
UPDATE ${stats_db_name}.datasource_tmp
SET harvested='true'
WHERE datasource_tmp.id IN (SELECT DISTINCT d.id
FROM ${stats_db_name}.datasource_tmp d,
${stats_db_name}.result_datasources rd
WHERE d.id = rd.datasource);
-- Project temporary table update and final project table creation with final updates that can not be applied to ORC tables
UPDATE ${stats_db_name}.project_tmp SET haspubs='yes' WHERE project_tmp.id IN (SELECT pr.id FROM ${stats_db_name}.project_results pr, ${stats_db_name}.result r WHERE pr.result=r.id AND r.type='publication');
UPDATE ${stats_db_name}.project_tmp
SET haspubs='yes'
WHERE project_tmp.id IN (SELECT pr.id
FROM ${stats_db_name}.project_results pr,
${stats_db_name}.result r
WHERE pr.result = r.id
AND r.type = 'publication');
DROP TABLE IF EXISTS ${stats_db_name}.project;
CREATE TABLE ${stats_db_name}.project stored as parquet as
SELECT p.id , p.acronym, p.title, p.funder, p.funding_lvl0, p.funding_lvl1, p.funding_lvl2, p.ec39, p.type, p.startdate, p.enddate, p.start_year, p.end_year, p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier, p.code
SELECT p.id,
p.acronym,
p.title,
p.funder,
p.funding_lvl0,
p.funding_lvl1,
p.funding_lvl2,
p.ec39,
p.type,
p.startdate,
p.enddate,
p.start_year,
p.end_year,
p.duration,
CASE WHEN prr1.id IS NULL THEN 'no' ELSE 'yes' END AS haspubs,
CASE WHEN prr1.id IS NULL THEN 0 ELSE prr1.np END AS numpubs,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.daysForlastPub END AS daysforlastpub,
CASE WHEN prr2.id IS NULL THEN 0 ELSE prr2.dp END AS delayedpubs,
p.callidentifier,
p.code
FROM ${stats_db_name}.project_tmp p
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr INNER JOIN ${stats_db_name}.result r ON pr.result=r.id
WHERE r.type='publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id, max(datediff(to_date(r.date), to_date(pp.enddate)) ) AS daysForlastPub , count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp, ${stats_db_name}.project_results pr, ${stats_db_name}.result r
WHERE pp.id=pr.id AND pr.result=r.id AND r.type='publication' AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
LEFT JOIN (SELECT pr.id, count(distinct pr.result) AS np
FROM ${stats_db_name}.project_results pr
INNER JOIN ${stats_db_name}.result r ON pr.result = r.id
WHERE r.type = 'publication'
GROUP BY pr.id) AS prr1 on prr1.id = p.id
LEFT JOIN (SELECT pp.id,
max(datediff(to_date(r.date), to_date(pp.enddate))) AS daysForlastPub,
count(distinct r.id) AS dp
FROM ${stats_db_name}.project_tmp pp,
${stats_db_name}.project_results pr,
${stats_db_name}.result r
WHERE pp.id = pr.id
AND pr.result = r.id
AND r.type = 'publication'
AND datediff(to_date(r.date), to_date(pp.enddate)) > 0
GROUP BY pp.id) AS prr2
ON prr2.id = p.id;
-- Publication temporary table updates
UPDATE ${stats_db_name}.publication_tmp SET delayed = 'yes' WHERE publication_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.publication_tmp
SET delayed = 'yes'
WHERE publication_tmp.id IN (SELECT distinct r.id
FROM stats_wf_db_obs.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
-- Dataset temporary table updates
UPDATE ${stats_db_name}.dataset_tmp SET delayed = 'yes' WHERE dataset_tmp.id IN (SELECT distinct r.id FROM stats_wf_db_obs.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.dataset_tmp
SET delayed = 'yes'
WHERE dataset_tmp.id IN (SELECT distinct r.id
FROM stats_wf_db_obs.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
-- Software temporary table updates
UPDATE ${stats_db_name}.software_tmp SET delayed = 'yes' WHERE software_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.software_tmp
SET delayed = 'yes'
WHERE software_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
-- Oherresearchproduct temporary table updates
UPDATE ${stats_db_name}.otherresearchproduct_tmp SET delayed = 'yes' WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id FROM ${stats_db_name}.result r, ${stats_db_name}.project_results pr, ${stats_db_name}.project_tmp p WHERE r.id=pr.result AND pr.id=p.id AND to_date(r.date)-to_date(p.enddate) > 0);
UPDATE ${stats_db_name}.otherresearchproduct_tmp
SET delayed = 'yes'
WHERE otherresearchproduct_tmp.id IN (SELECT distinct r.id
FROM ${stats_db_name}.result r,
${stats_db_name}.project_results pr,
${stats_db_name}.project_tmp p
WHERE r.id = pr.result
AND pr.id = p.id
AND to_date(r.date) - to_date(p.enddate) > 0);
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS SELECT result_projects.id AS result, result_projects.project AS project_results, result.date as resultdate, project.enddate as projectenddate, result_projects.daysfromend AS daysfromend FROM ${stats_db_name}.result_projects, ${stats_db_name}.result, ${stats_db_name}.project WHERE result_projects.id=result.id AND result.type='publication' AND project.id=result_projects.project;
CREATE OR REPLACE VIEW ${stats_db_name}.project_results_publication AS
SELECT result_projects.id AS result,
result_projects.project AS project_results,
result.date as resultdate,
project.enddate as projectenddate,
result_projects.daysfromend AS daysfromend
FROM ${stats_db_name}.result_projects,
${stats_db_name}.result,
${stats_db_name}.project
WHERE result_projects.id = result.id
AND result.type = 'publication'
AND project.id = result_projects.project;
-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project COMPUTE STATISTICS FOR COLUMNS;

67
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step12.sql
View File

@ -1,21 +1,25 @@
------------------------------------------------------------------------------------------------------
-- Creating parquet tables from the updated temporary tables and removing unnecessary temporary tables
------------------------------------------------------------------------------------------------------
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS
SELECT *
FROM ${stats_db_name}.datasource_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.datasource;
CREATE TABLE ${stats_db_name}.datasource stored AS parquet AS SELECT * FROM ${stats_db_name}.datasource_tmp;
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS
SELECT *
FROM ${stats_db_name}.publication_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.publication;
CREATE TABLE ${stats_db_name}.publication stored AS parquet AS SELECT * FROM ${stats_db_name}.publication_tmp;
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS
SELECT *
FROM ${stats_db_name}.dataset_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.dataset;
CREATE TABLE ${stats_db_name}.dataset stored AS parquet AS SELECT * FROM ${stats_db_name}.dataset_tmp;
CREATE TABLE ${stats_db_name}.software stored AS parquet AS
SELECT *
FROM ${stats_db_name}.software_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.software;
CREATE TABLE ${stats_db_name}.software stored AS parquet AS SELECT * FROM ${stats_db_name}.software_tmp;
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct;
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS SELECT * FROM ${stats_db_name}.otherresearchproduct_tmp;
CREATE TABLE ${stats_db_name}.otherresearchproduct stored AS parquet AS
SELECT *
FROM ${stats_db_name}.otherresearchproduct_tmp;
DROP TABLE ${stats_db_name}.project_tmp;
DROP TABLE ${stats_db_name}.datasource_tmp;
@ -29,10 +33,47 @@ DROP TABLE ${stats_db_name}.otherresearchproduct_tmp;
---------------------------------------------
-- Result
CREATE OR REPLACE VIEW ${stats_db_name}.result AS SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication UNION ALL SELECT *, bestlicence as access_mode FROM ${stats_db_name}.software UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.dataset UNION ALL SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct;
CREATE OR REPLACE VIEW ${stats_db_name}.result AS
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.publication
UNION ALL
SELECT *, bestlicence as access_mode
FROM ${stats_db_name}.software
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.dataset
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.otherresearchproduct;
-------------------------------------------------------------------------------
-- To see with Antonis if the following is needed and where it should be placed
-------------------------------------------------------------------------------
CREATE TABLE ${stats_db_name}.numbers_country AS SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications FROM ${stats_db_name}.result r, ${stats_db_name}.result_datasources rd, ${stats_db_name}.datasource d, ${stats_db_name}.datasource_organizations dor, ${stats_db_name}.organization org WHERE r.id=rd.id AND rd.datasource=d.id AND d.id=dor.id AND dor.organization=org.id AND r.type='publication' AND r.bestlicence='Open Access' GROUP BY org.country;
CREATE TABLE ${stats_db_name}.numbers_country AS
SELECT org.country AS country, count(distinct rd.datasource) AS datasources, count(distinct r.id) AS publications
FROM ${stats_db_name}.result r,
${stats_db_name}.result_datasources rd,
${stats_db_name}.datasource d,
${stats_db_name}.datasource_organizations dor,
${stats_db_name}.organization org
WHERE r.id = rd.id
AND rd.datasource = d.id
AND d.id = dor.id
AND dor.organization = org.id
AND r.type = 'publication'
AND r.bestlicence = 'Open Access'
GROUP BY org.country;
-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.datasource COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.numbers_country COMPUTE STATISTICS FOR COLUMNS;

9
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step13.sql
View File

@ -57,3 +57,12 @@ UNION ALL
SELECT * FROM ${stats_db_name}.software_sources
UNION ALL
SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
--
-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_sources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_sources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_sources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_sources COMPUTE STATISTICS FOR COLUMNS;

13
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
View File

@ -47,3 +47,16 @@ FROM (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false) d on o.datasource = d.id;
-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_licenses COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_licenses COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_licenses COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_licenses COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.organization_pids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.organization_sources COMPUTE STATISTICS FOR COLUMNS;

9
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step15.sql
View File

@ -34,3 +34,12 @@ union all
select * from ${stats_db_name}.software_refereed
union all
select * from ${stats_db_name}.otherresearchproduct_refereed;
--
-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_refereed COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_refereed COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_refereed COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_refereed COMPUTE STATISTICS FOR COLUMNS;

11
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16.sql
View File

@ -78,3 +78,14 @@ join ${stats_db_name}.datasource d on d.id=rd.datasource
join ${stats_db_name}.datasource_organizations dor on dor.id=d.id
join ${stats_db_name}.organization o on o.id=dor.organization
where o.country is not null and o.country!='';
-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_peerreviewed COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_greenoa COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_gold COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_affiliated_country COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_deposited_country COMPUTE STATISTICS FOR COLUMNS;

3
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_5.sql
View File

@ -53,3 +53,6 @@ drop table if exists ${stats_db_name}.result;
drop view if exists ${stats_db_name}.result;
create table ${stats_db_name}.result stored as parquet as select * from ${stats_db_name}.result_tmp;
drop table ${stats_db_name}.result_tmp;
--
-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result COMPUTE STATISTICS FOR COLUMNS;

9
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step16_6.sql
View File

@ -29,4 +29,11 @@ select rcount.pid, sum(case when rcount.type='publication' then rcount.count els
from rcount
group by rcount.pid;
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture
create view ${stats_db_name}.rndexpenditure as select * from stats_ext.rndexpediture;
--
-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_projectcount COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_fundercount COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project_resultcount COMPUTE STATISTICS FOR COLUMNS;

207
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step17.sql
View File

@ -1,207 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Shadow schema table exchange
------------------------------------------------------
------------------------------------------------------
-- Dropping old views
DROP VIEW IF EXISTS ${stats_db_shadow_name}.category;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.concept;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.context;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.countrygdp;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.creation_date;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.dataset_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.datasource_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.funder;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.fundref;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.numbers_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.organization_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_organizations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_resultcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.project_results_publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.publication_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_affiliated_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_deposited_country;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_fundercount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_gold;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_greenoa;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_organization;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_peerreviewed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projectcount;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_projects;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.result_topics;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.rndexpediture;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.roarmap;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_citations;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_classifications;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_concepts;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_datasources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_languages;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_licenses;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_oids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_pids;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_refereed;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_sources;
DROP VIEW IF EXISTS ${stats_db_shadow_name}.software_topics;
-- Creating the shadow database, in case it doesn't exist
CREATE database IF NOT EXISTS ${stats_db_shadow_name};
-- Creating new views
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.category AS SELECT * FROM ${stats_db_name}.category;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.concept AS SELECT * FROM ${stats_db_name}.concept;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.context AS SELECT * FROM ${stats_db_name}.context;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.country AS SELECT * FROM ${stats_db_name}.country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.countrygdp AS SELECT * FROM ${stats_db_name}.countrygdp;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.creation_date AS SELECT * FROM ${stats_db_name}.creation_date;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset AS SELECT * FROM ${stats_db_name}.dataset;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_citations AS SELECT * FROM ${stats_db_name}.dataset_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_classifications AS SELECT * FROM ${stats_db_name}.dataset_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_concepts AS SELECT * FROM ${stats_db_name}.dataset_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_datasources AS SELECT * FROM ${stats_db_name}.dataset_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_languages AS SELECT * FROM ${stats_db_name}.dataset_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_licenses AS SELECT * FROM ${stats_db_name}.dataset_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_oids AS SELECT * FROM ${stats_db_name}.dataset_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_pids AS SELECT * FROM ${stats_db_name}.dataset_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_refereed AS SELECT * FROM ${stats_db_name}.dataset_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_sources AS SELECT * FROM ${stats_db_name}.dataset_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.dataset_topics AS SELECT * FROM ${stats_db_name}.dataset_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource AS SELECT * FROM ${stats_db_name}.datasource;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_languages AS SELECT * FROM ${stats_db_name}.datasource_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_oids AS SELECT * FROM ${stats_db_name}.datasource_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_organizations AS SELECT * FROM ${stats_db_name}.datasource_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_results AS SELECT * FROM ${stats_db_name}.datasource_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.datasource_sources AS SELECT * FROM ${stats_db_name}.datasource_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.funder AS SELECT * FROM ${stats_db_name}.funder;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.fundref AS SELECT * FROM ${stats_db_name}.fundref;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.numbers_country AS SELECT * FROM ${stats_db_name}.numbers_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization AS SELECT * FROM ${stats_db_name}.organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_datasources AS SELECT * FROM ${stats_db_name}.organization_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_pids AS SELECT * FROM ${stats_db_name}.organization_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_projects AS SELECT * FROM ${stats_db_name}.organization_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.organization_sources AS SELECT * FROM ${stats_db_name}.organization_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct AS SELECT * FROM ${stats_db_name}.otherresearchproduct;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_citations AS SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_classifications AS SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_concepts AS SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_datasources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_languages AS SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_licenses AS SELECT * FROM ${stats_db_name}.otherresearchproduct_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_oids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_pids AS SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_refereed AS SELECT * FROM ${stats_db_name}.otherresearchproduct_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_sources AS SELECT * FROM ${stats_db_name}.otherresearchproduct_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.otherresearchproduct_topics AS SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project AS SELECT * FROM ${stats_db_name}.project;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_oids AS SELECT * FROM ${stats_db_name}.project_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_organizations AS SELECT * FROM ${stats_db_name}.project_organizations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results AS SELECT * FROM ${stats_db_name}.project_results;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_resultcount AS SELECT * FROM ${stats_db_name}.project_resultcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.project_results_publication AS SELECT * FROM ${stats_db_name}.project_results_publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication AS SELECT * FROM ${stats_db_name}.publication;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_citations AS SELECT * FROM ${stats_db_name}.publication_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_languages AS SELECT * FROM ${stats_db_name}.publication_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_licenses AS SELECT * FROM ${stats_db_name}.publication_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_oids AS SELECT * FROM ${stats_db_name}.publication_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_pids AS SELECT * FROM ${stats_db_name}.publication_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_refereed AS SELECT * FROM ${stats_db_name}.publication_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_sources AS SELECT * FROM ${stats_db_name}.publication_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.publication_topics AS SELECT * FROM ${stats_db_name}.publication_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result AS SELECT * FROM ${stats_db_name}.result;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_affiliated_country AS SELECT * FROM ${stats_db_name}.result_affiliated_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_citations AS SELECT * FROM ${stats_db_name}.result_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_classifications AS SELECT * FROM ${stats_db_name}.result_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_concepts AS SELECT * FROM ${stats_db_name}.result_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_datasources AS SELECT * FROM ${stats_db_name}.result_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_deposited_country AS SELECT * FROM ${stats_db_name}.result_deposited_country;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_fundercount AS SELECT * FROM ${stats_db_name}.result_fundercount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_gold AS SELECT * FROM ${stats_db_name}.result_gold;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_greenoa AS SELECT * FROM ${stats_db_name}.result_greenoa;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_languages AS SELECT * FROM ${stats_db_name}.result_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_licenses AS SELECT * FROM ${stats_db_name}.result_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_oids AS SELECT * FROM ${stats_db_name}.result_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_organization AS SELECT * FROM ${stats_db_name}.result_organization;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_peerreviewed AS SELECT * FROM ${stats_db_name}.result_peerreviewed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_pids AS SELECT * FROM ${stats_db_name}.result_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projectcount AS SELECT * FROM ${stats_db_name}.result_projectcount;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_projects AS SELECT * FROM ${stats_db_name}.result_projects;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_refereed AS SELECT * FROM ${stats_db_name}.result_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_sources AS SELECT * FROM ${stats_db_name}.result_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.result_topics AS SELECT * FROM ${stats_db_name}.result_topics;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.rndexpediture AS SELECT * FROM ${stats_db_name}.rndexpediture;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.roarmap AS SELECT * FROM ${stats_db_name}.roarmap;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software AS SELECT * FROM ${stats_db_name}.software;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_citations AS SELECT * FROM ${stats_db_name}.software_citations;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_classifications AS SELECT * FROM ${stats_db_name}.software_classifications;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_concepts AS SELECT * FROM ${stats_db_name}.software_concepts;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_datasources AS SELECT * FROM ${stats_db_name}.software_datasources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_languages AS SELECT * FROM ${stats_db_name}.software_languages;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_licenses AS SELECT * FROM ${stats_db_name}.software_licenses;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_oids AS SELECT * FROM ${stats_db_name}.software_oids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_pids AS SELECT * FROM ${stats_db_name}.software_pids;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_refereed AS SELECT * FROM ${stats_db_name}.software_refereed;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_sources AS SELECT * FROM ${stats_db_name}.software_sources;
CREATE VIEW IF NOT EXISTS ${stats_db_shadow_name}.software_topics AS SELECT * FROM ${stats_db_name}.software_topics;

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step18.sql
View File

@ -1,8 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
INVALIDATE METADATA ${stats_db_name};

8
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step19.sql
View File

@ -1,8 +0,0 @@
------------------------------------------------------
------------------------------------------------------
-- Impala table statistics - Needed to make the tables
-- visible for impala
------------------------------------------------------
------------------------------------------------------
INVALIDATE METADATA ${stats_db_name};

119
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step2.sql
View File

@ -5,40 +5,109 @@
--------------------------------------------------------------
-- Publication temporary table
DROP TABLE IF EXISTS ${stats_db_name}.publication_tmp;
CREATE TABLE ${stats_db_name}.publication_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
)
clustered by (id) into 100 buckets stored as orc tblproperties ('transactional' = 'true');
CREATE TABLE ${stats_db_name}.publication_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored as orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.publication_tmp SELECT substr(p.id, 4) as id, p.title[0].value as title, p.publisher.value as publisher, p.journal.name as journal ,
p.dateofacceptance.value as date, date_format(p.dateofacceptance.value,'yyyy') as year, p.bestaccessright.classname as bestlicence,
p.embargoenddate.value as embargo_end_date, false as delayed, size(p.author) as authors , concat_ws('\u003B',p.source.value) as source,
case when size(p.description) > 0 then true else false end as abstract,
'publication' as type
INSERT INTO ${stats_db_name}.publication_tmp
SELECT substr(p.id, 4) as id,
p.title[0].value as title,
p.publisher.value as publisher,
p.journal.name as journal,
p.dateofacceptance.value as date,
date_format(p.dateofacceptance.value, 'yyyy') as year,
p.bestaccessright.classname as bestlicence,
p.embargoenddate.value as embargo_end_date,
false as delayed,
size(p.author) as authors,
concat_ws('\u003B', p.source.value) as source,
case when size(p.description) > 0 then true else false end as abstract,
'publication' as type
from ${openaire_db_name}.publication p
where p.datainfo.deletedbyinference=false;
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_classifications AS SELECT substr(p.id, 4) as id, instancetype.classname as type from ${openaire_db_name}.publication p LATERAL VIEW explode(p.instance.instancetype) instances as instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_classifications AS
SELECT substr(p.id, 4) as id, instancetype.classname as type
from ${openaire_db_name}.publication p
LATERAL VIEW explode(p.instance.instancetype) instances as instancetype
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.publication p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_concepts AS
SELECT substr(p.id, 4) as id, contexts.context.id as concept
from ${openaire_db_name}.publication p
LATERAL VIEW explode(p.context) contexts as context
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_datasources as
SELECT p.id, case when d.id is null then 'other' else p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
where p.datainfo.deletedbyinference=false ) p
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference=false ) d on p.datasource = d.id;
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) as datasource
from ${openaire_db_name}.publication p lateral view explode(p.instance) instances as instance
where p.datainfo.deletedbyinference = false) p
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.publication_languages AS select substr(p.id, 4) as id, p.language.classname as language FROM ${openaire_db_name}.publication p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_languages AS
select substr(p.id, 4) as id, p.language.classname as language
FROM ${openaire_db_name}.publication p
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_oids AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_pids AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value as pid
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.publication_topics as select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic FROM ${openaire_db_name}.publication p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_topics as
select substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS TYPE, subjects.subject.value AS topic
FROM ${openaire_db_name}.publication p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false;
-- Publication_citations
CREATE TABLE ${stats_db_name}.publication_citations AS SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.publication p lateral view explode(p.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.publication_citations AS
SELECT substr(p.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
FROM ${openaire_db_name}.publication p
lateral view explode(p.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and p.datainfo.deletedbyinference = false;
-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_classifications COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_concepts COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_datasources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_languages COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_pids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_topics COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.publication_citations COMPUTE STATISTICS FOR COLUMNS;

121
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step20-createMonitorDB.sql Normal file
View File

@ -0,0 +1,121 @@
drop database if exists TARGET cascade;
create database if not exists TARGET;
create view if not exists TARGET.category as select * from SOURCE.category;
create view if not exists TARGET.concept as select * from SOURCE.concept;
create view if not exists TARGET.context as select * from SOURCE.context;
create view if not exists TARGET.country as select * from SOURCE.country;
create view if not exists TARGET.countrygdp as select * from SOURCE.countrygdp;
create view if not exists TARGET.creation_date as select * from SOURCE.creation_date;
create view if not exists TARGET.funder as select * from SOURCE.funder;
create view if not exists TARGET.fundref as select * from SOURCE.fundref;
create view if not exists TARGET.rndexpenditure as select * from SOURCE.rndexpediture;
--create view if not exists TARGET.roarmap as select * from SOURCE.roarmap;
create table TARGET.result as
select distinct * from (
select * from SOURCE.result r where exists (select 1 from SOURCE.result_projects rp join SOURCE.project p on rp.project=p.id where rp.id=r.id)
union all
select * from SOURCE.result r where exists (select 1 from SOURCE.result_concepts rc where rc.id=r.id) ) foo;
compute stats TARGET.result;
create table TARGET.result_affiliated_country as select * from SOURCE.result_affiliated_country rac where exists (select 1 from TARGET.result r where r.id=rac.id);
compute stats TARGET.result_affiliated_country;
create table TARGET.result_citations as select * from SOURCE.result_citations orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_citations;
create table TARGET.result_classifications as select * from SOURCE.result_classifications orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_classifications;
create table TARGET.result_concepts as select * from SOURCE.result_concepts orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_concepts;
create table TARGET.result_datasources as select * from SOURCE.result_datasources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_datasources;
create table TARGET.result_deposited_country as select * from SOURCE.result_deposited_country orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_deposited_country;
create table TARGET.result_fundercount as select * from SOURCE.result_fundercount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_fundercount;
create table TARGET.result_gold as select * from SOURCE.result_gold orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_gold;
create table TARGET.result_greenoa as select * from SOURCE.result_greenoa orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_greenoa;
create table TARGET.result_languages as select * from SOURCE.result_languages orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_languages;
create table TARGET.result_licences as select * from SOURCE.result_licenses orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_licences;
create table TARGET.result_oids as select * from SOURCE.result_oids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_oids;
create table TARGET.result_organization as select * from SOURCE.result_organization orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_organization;
create table TARGET.result_peerreviewed as select * from SOURCE.result_peerreviewed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_peerreviewed;
create table TARGET.result_pids as select * from SOURCE.result_pids orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_pids;
create table TARGET.result_projectcount as select * from SOURCE.result_projectcount orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_projectcount;
create table TARGET.result_projects as select * from SOURCE.result_projects orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_projects;
create table TARGET.result_refereed as select * from SOURCE.result_refereed orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_refereed;
create table TARGET.result_sources as select * from SOURCE.result_sources orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_sources;
create table TARGET.result_topics as select * from SOURCE.result_topics orig where exists (select 1 from TARGET.result r where r.id=orig.id);
compute stats TARGET.result_topics;
-- datasources
create view if not exists TARGET.datasource as select * from SOURCE.datasource;
create view if not exists TARGET.datasource_oids as select * from SOURCE.datasource_oids;
create view if not exists TARGET.datasource_organizations as select * from SOURCE.datasource_organizations;
create view if not exists TARGET.datasource_sources as select * from SOURCE.datasource_sources;
create table TARGET.datasource_results as select id as result, datasource as id from TARGET.result_datasources;
compute stats TARGET.datasource_results;
-- organizations
create view if not exists TARGET.organization as select * from SOURCE.organization;
create view if not exists TARGET.organization_datasources as select * from SOURCE.organization_datasources;
create view if not exists TARGET.organization_pids as select * from SOURCE.organization_pids;
create view if not exists TARGET.organization_projects as select * from SOURCE.organization_projects;
create view if not exists TARGET.organization_sources as select * from SOURCE.organization_sources;
-- projects
create view if not exists TARGET.project as select * from SOURCE.project;
create view if not exists TARGET.project_oids as select * from SOURCE.project_oids;
create view if not exists TARGET.project_organizations as select * from SOURCE.project_organizations;
create view if not exists TARGET.project_resultcount as select * from SOURCE.project_resultcount;
create table TARGET.project_results as select id as result, project as id from TARGET.result_projects;
compute stats TARGET.project_results;
--denorm
alter table TARGET.result rename to TARGET.res_tmp;
create table TARGET.result_denorm as
select distinct r.*, rp.project, p.acronym as pacronym, p.title as ptitle, p.funder as pfunder, p.funding_lvl0 as pfunding_lvl0, rd.datasource, d.name as dname, d.type as dtype
from TARGET.res_tmp r
join TARGET.result_projects rp on rp.id=r.id
join TARGET.result_datasources rd on rd.id=r.id
join TARGET.project p on p.id=rp.project
join TARGET.datasource d on d.id=rd.datasource;
compute stats TARGET.result_denorm;
alter table TARGET.result_denorm rename to TARGET.result;
drop table TARGET.res_tmp;
--- done!

114
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step3.sql
View File

@ -5,32 +5,108 @@
------------------------------------------------------
-- Dataset temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.dataset_tmp;
CREATE TABLE ${stats_db_name}.dataset_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) into 100 buckets stored AS orc tblproperties('transactional'='true');
CREATE TABLE ${stats_db_name}.dataset_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
)
clustered by (id) into 100 buckets stored AS orc tblproperties ('transactional' = 'true');
INSERT INTO ${stats_db_name}.dataset_tmp SELECT substr(d.id, 4) AS id, d.title[0].value AS title, d.publisher.value AS publisher, cast(null AS string) AS journal,
d.dateofacceptance.value as date, date_format(d.dateofacceptance.value,'yyyy') AS year, d.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date, false AS delayed, size(d.author) AS authors , concat_ws('\u003B',d.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
'dataset' AS type
INSERT INTO ${stats_db_name}.dataset_tmp
SELECT substr(d.id, 4) AS id,
d.title[0].value AS title,
d.publisher.value AS publisher,
cast(null AS string) AS journal,
d.dateofacceptance.value as date,
date_format(d.dateofacceptance.value, 'yyyy') AS year,
d.bestaccessright.classname AS bestlicence,
d.embargoenddate.value AS embargo_end_date,
false AS delayed,
size(d.author) AS authors,
concat_ws('\u003B', d.source.value) AS source,
CASE WHEN SIZE(d.description) > 0 THEN TRUE ELSE FALSE end AS abstract,
'dataset' AS type
FROM ${openaire_db_name}.dataset d
WHERE d.datainfo.deletedbyinference=FALSE;
WHERE d.datainfo.deletedbyinference = FALSE;
-- Dataset_citations
CREATE TABLE ${stats_db_name}.dataset_citations AS SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result FROM ${openaire_db_name}.dataset d LATERAL VIEW explode(d.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and d.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_citations AS
SELECT substr(d.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS result
FROM ${openaire_db_name}.dataset d
LATERAL VIEW explode(d.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and d.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_classifications AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_concepts AS SELECT substr(p.id, 4) as id, contexts.context.id as concept from ${openaire_db_name}.dataset p LATERAL VIEW explode(p.context) contexts as context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_concepts AS
SELECT substr(p.id, 4) as id, contexts.context.id as concept
from ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.context) contexts as context
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_datasources AS SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.dataset_datasources AS
SELECT p.id, case when d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
FROM (
SELECT substr(p.id, 4) as id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.instance) instances AS instance
where p.datainfo.deletedbyinference = false) p
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.dataset_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.dataset p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_languages AS
SELECT substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.dataset p
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_oids AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_pids AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.dataset_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.dataset p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.dataset_topics AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.dataset p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false;
--
-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_classifications COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_concepts COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_datasources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_languages COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_pids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.dataset_topics COMPUTE STATISTICS FOR COLUMNS;

114
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step4.sql
View File

@ -5,32 +5,108 @@
--------------------------------------------------------
-- Software temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.software_tmp;
CREATE TABLE ${stats_db_name}.software_tmp (id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) clustered by (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
CREATE TABLE ${stats_db_name}.software_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
)
clustered by (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
INSERT INTO ${stats_db_name}.software_tmp SELECT substr(s.id, 4) as id, s.title[0].value AS title, s.publisher.value AS publisher, CAST(NULL AS string) AS journal,
s.dateofacceptance.value AS DATE, date_format(s.dateofacceptance.value,'yyyy') AS YEAR, s.bestaccessright.classname AS bestlicence,
s.embargoenddate.value AS embargo_end_date, FALSE AS delayed, SIZE(s.author) AS authors , concat_ws('\u003B',s.source.value) AS source,
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'software' as type
INSERT INTO ${stats_db_name}.software_tmp
SELECT substr(s.id, 4) as id,
s.title[0].value AS title,
s.publisher.value AS publisher,
CAST(NULL AS string) AS journal,
s.dateofacceptance.value AS DATE,
date_format(s.dateofacceptance.value, 'yyyy') AS YEAR,
s.bestaccessright.classname AS bestlicence,
s.embargoenddate.value AS embargo_end_date,
FALSE AS delayed,
SIZE(s.author) AS authors,
concat_ws('\u003B', s.source.value) AS source,
CASE WHEN SIZE(s.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'software' as type
from ${openaire_db_name}.software s
where s.datainfo.deletedbyinference=false;
where s.datainfo.deletedbyinference = false;
-- Software_citations
CREATE TABLE ${stats_db_name}.software_citations AS SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.software s LATERAL VIEW explode(s.extrainfo) citations as citation where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and s.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_citations AS
SELECT substr(s.id, 4) as id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
FROM ${openaire_db_name}.software s
LATERAL VIEW explode(s.extrainfo) citations as citation
where xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and s.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_classifications AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_concepts AS
SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.context) contexts AS context
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.instance) instances AS instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id FROM ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.software_datasources AS
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource end as datasource
FROM (
SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.instance) instances AS instance
where p.datainfo.deletedbyinference = false) p
LEFT OUTER JOIN (
SELECT substr(d.id, 4) id
FROM ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false) d ON p.datasource = d.id;
CREATE TABLE ${stats_db_name}.software_languages AS select substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.software p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_languages AS
select substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.software p
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_oids AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_pids AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.software_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.software p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.software_topics AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.software p
LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false;
--
-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_classifications COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_concepts COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_datasources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_languages COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_pids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.software_topics COMPUTE STATISTICS FOR COLUMNS;

103
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step5.sql
View File

@ -5,32 +5,99 @@
--------------------------------------------------------------------------------
-- Otherresearchproduct temporary table supporting updates
DROP TABLE IF EXISTS ${stats_db_name}.otherresearchproduct_tmp;
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp ( id STRING, title STRING, publisher STRING, journal STRING, date STRING, year STRING, bestlicence STRING, embargo_end_date STRING, delayed BOOLEAN, authors INT, source STRING, abstract BOOLEAN, type STRING ) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
CREATE TABLE ${stats_db_name}.otherresearchproduct_tmp
(
id STRING,
title STRING,
publisher STRING,
journal STRING,
date STRING,
year STRING,
bestlicence STRING,
embargo_end_date STRING,
delayed BOOLEAN,
authors INT,
source STRING,
abstract BOOLEAN,
type STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp SELECT substr(o.id, 4) AS id, o.title[0].value AS title, o.publisher.value AS publisher, CAST(NULL AS string) AS journal,
o.dateofacceptance.value AS DATE, date_format(o.dateofacceptance.value,'yyyy') AS year, o.bestaccessright.classname AS bestlicence,
o.embargoenddate.value as embargo_end_date, FALSE AS delayed, SIZE(o.author) AS authors , concat_ws('\u003B',o.source.value) AS source,
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'other' AS type
INSERT INTO ${stats_db_name}.otherresearchproduct_tmp
SELECT substr(o.id, 4) AS id,
o.title[0].value AS title,
o.publisher.value AS publisher,
CAST(NULL AS string) AS journal,
o.dateofacceptance.value AS DATE,
date_format(o.dateofacceptance.value, 'yyyy') AS year,
o.bestaccessright.classname AS bestlicence,
o.embargoenddate.value as embargo_end_date,
FALSE AS delayed,
SIZE(o.author) AS authors,
concat_ws('\u003B', o.source.value) AS source,
CASE WHEN SIZE(o.description) > 0 THEN TRUE ELSE FALSE END AS abstract,
'other' AS type
FROM ${openaire_db_name}.otherresearchproduct o
WHERE o.datainfo.deletedbyinference=FALSE;
WHERE o.datainfo.deletedbyinference = FALSE;
-- Otherresearchproduct_citations
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") !="" and o.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_citations AS
SELECT substr(o.id, 4) AS id, xpath_string(citation.value, "//citation/id[@type='openaire']/@value") AS RESULT
FROM ${openaire_db_name}.otherresearchproduct o LATERAL VIEW explode(o.extrainfo) citations AS citation
WHERE xpath_string(citation.value, "//citation/id[@type='openaire']/@value") != ""
and o.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS SELECT substr(p.id, 4) AS id, instancetype.classname AS type FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_classifications AS
SELECT substr(p.id, 4) AS id, instancetype.classname AS type
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.instance.instancetype) instances AS instancetype
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS SELECT substr(p.id, 4) AS id, contexts.context.id AS concept FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_concepts AS
SELECT substr(p.id, 4) AS id, contexts.context.id AS concept
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.context) contexts AS context
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance where p.datainfo.deletedbyinference=false) p LEFT OUTER JOIN
(SELECT substr(d.id, 4) id from ${openaire_db_name}.datasource d WHERE d.datainfo.deletedbyinference=false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.otherresearchproduct_datasources AS
SELECT p.id, CASE WHEN d.id IS NULL THEN 'other' ELSE p.datasource END AS datasource
FROM (SELECT substr(p.id, 4) AS id, substr(instances.instance.hostedby.key, 4) AS datasource
from ${openaire_db_name}.otherresearchproduct p lateral view explode(p.instance) instances as instance
where p.datainfo.deletedbyinference = false) p
LEFT OUTER JOIN(SELECT substr(d.id, 4) id
from ${openaire_db_name}.datasource d
WHERE d.datainfo.deletedbyinference = false) d on p.datasource = d.id;
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS SELECT substr(p.id, 4) AS id, p.language.classname AS language FROM ${openaire_db_name}.otherresearchproduct p where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_languages AS
SELECT substr(p.id, 4) AS id, p.language.classname AS language
FROM ${openaire_db_name}.otherresearchproduct p
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_oids AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.originalid) oids AS ids
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_pids AS
SELECT substr(p.id, 4) AS id, ppid.qualifier.classname AS type, ppid.value AS pid
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.pid) pids AS ppid
where p.datainfo.deletedbyinference = false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject where p.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.otherresearchproduct_topics AS
SELECT substr(p.id, 4) AS id, subjects.subject.qualifier.classname AS type, subjects.subject.value AS topic
FROM ${openaire_db_name}.otherresearchproduct p LATERAL VIEW explode(p.subject) subjects AS subject
where p.datainfo.deletedbyinference = false;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_classifications COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_concepts COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_datasources COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_languages COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_pids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.otherresearchproduct_topics COMPUTE STATISTICS FOR COLUMNS;

94
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step6.sql
View File

@ -1,30 +1,84 @@
-- noinspection SqlNoDataSourceInspectionForFile
------------------------------------------------------
------------------------------------------------------
-- Project table/view and Project related tables/views
------------------------------------------------------
------------------------------------------------------
-- Project_oids Table
DROP TABLE IF EXISTS ${stats_db_name}.project_oids;
CREATE TABLE ${stats_db_name}.project_oids AS SELECT substr(p.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.project_oids AS
SELECT substr(p.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.project p LATERAL VIEW explode(p.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.project_organizations AS
SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization
from ${openaire_db_name}.relation r
WHERE r.reltype = 'projectOrganization'
and r.datainfo.deletedbyinference = false;
-- Project_organizations Table
DROP TABLE IF EXISTS ${stats_db_name}.project_organizations;
CREATE TABLE ${stats_db_name}.project_organizations AS SELECT substr(r.source, 4) AS id, substr(r.target, 4) AS organization from ${openaire_db_name}.relation r WHERE r.reltype='projectOrganization' and r.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.project_results AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'resultProject'
and r.datainfo.deletedbyinference = false;
-- Project_results Table
DROP TABLE IF EXISTS ${stats_db_name}.project_results;
CREATE TABLE ${stats_db_name}.project_results AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS result FROM ${openaire_db_name}.relation r WHERE r.reltype='resultProject' and r.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.project_tmp
(
id STRING,
acronym STRING,
title STRING,
funder STRING,
funding_lvl0 STRING,
funding_lvl1 STRING,
funding_lvl2 STRING,
ec39 STRING,
type STRING,
startdate STRING,
enddate STRING,
start_year INT,
end_year INT,
duration INT,
haspubs STRING,
numpubs INT,
daysforlastpub INT,
delayedpubs INT,
callidentifier STRING,
code STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
-- Project table
----------------
-- Creating and populating temporary Project table
DROP TABLE IF EXISTS ${stats_db_name}.project_tmp;
CREATE TABLE ${stats_db_name}.project_tmp (id STRING, acronym STRING, title STRING, funder STRING, funding_lvl0 STRING, funding_lvl1 STRING, funding_lvl2 STRING, ec39 STRING, type STRING, startdate STRING, enddate STRING, start_year INT, end_year INT, duration INT, haspubs STRING, numpubs INT, daysforlastpub INT, delayedpubs INT, callidentifier STRING, code STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
INSERT INTO ${stats_db_name}.project_tmp SELECT substr(p.id, 4) AS id, p.acronym.value AS acronym, p.title.value AS title, xpath_string(p.fundingtree[0].value, '//funder/name') AS funder, xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0, xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1, xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2, p.ecsc39.value AS ec39, p.contracttype.classname AS type, p.startdate.value AS startdate, p.enddate.value AS enddate, year(p.startdate.value) AS start_year, year(p.enddate.value) AS end_year, CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration, 'no' AS haspubs, 0 AS numpubs, 0 AS daysforlastpub, 0 AS delayedpubs, p.callidentifier.value AS callidentifier, p.code.value AS code FROM ${openaire_db_name}.project p WHERE p.datainfo.deletedbyinference=false;
INSERT INTO ${stats_db_name}.project_tmp
SELECT substr(p.id, 4) AS id,
p.acronym.value AS acronym,
p.title.value AS title,
xpath_string(p.fundingtree[0].value, '//funder/name') AS funder,
xpath_string(p.fundingtree[0].value, '//funding_level_0/name') AS funding_lvl0,
xpath_string(p.fundingtree[0].value, '//funding_level_1/name') AS funding_lvl1,
xpath_string(p.fundingtree[0].value, '//funding_level_2/name') AS funding_lvl2,
p.ecsc39.value AS ec39,
p.contracttype.classname AS type,
p.startdate.value AS startdate,
p.enddate.value AS enddate,
year(p.startdate.value) AS start_year,
year(p.enddate.value) AS end_year,
CAST(MONTHS_BETWEEN(p.enddate.value, p.startdate.value) AS INT) AS duration,
'no' AS haspubs,
0 AS numpubs,
0 AS daysforlastpub,
0 AS delayedpubs,
p.callidentifier.value AS callidentifier,
p.code.value AS code
FROM ${openaire_db_name}.project p
WHERE p.datainfo.deletedbyinference = false;
create table ${stats_db_name}.funder as
select distinct xpath_string(fund, '//funder/id') as id, xpath_string(fund, '//funder/name') as name, xpath_string(fund, '//funder/shortname') as shortname
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund
select distinct xpath_string(fund, '//funder/id') as id,
xpath_string(fund, '//funder/name') as name,
xpath_string(fund, '//funder/shortname') as shortname
from ${openaire_db_name}.project p lateral view explode(p.fundingtree.value) fundingtree as fund;
-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project_organizations COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project_results COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.project_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.funder COMPUTE STATISTICS FOR COLUMNS;

136
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step7.sql
View File

@ -5,27 +5,137 @@
----------------------------------------------------
-- Views on temporary tables that should be re-created in the end
CREATE OR REPLACE VIEW ${stats_db_name}.result as SELECT *, bestlicence AS access_mode FROM ${stats_db_name}.publication_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.software_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.dataset_tmp UNION ALL SELECT *,bestlicence AS access_mode FROM ${stats_db_name}.otherresearchproduct_tmp;
CREATE OR REPLACE VIEW ${stats_db_name}.result as
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.publication_tmp
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.software_tmp
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.dataset_tmp
UNION ALL
SELECT *, bestlicence AS access_mode
FROM ${stats_db_name}.otherresearchproduct_tmp;
-- Views on final tables
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS SELECT * FROM ${stats_db_name}.publication_datasources UNION ALL SELECT * FROM ${stats_db_name}.software_datasources UNION ALL SELECT * FROM ${stats_db_name}.dataset_datasources UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE OR REPLACE VIEW ${stats_db_name}.result_datasources AS
SELECT *
FROM ${stats_db_name}.publication_datasources
UNION ALL
SELECT *
FROM ${stats_db_name}.software_datasources
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_datasources
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_datasources;
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS SELECT * FROM ${stats_db_name}.publication_citations UNION ALL SELECT * FROM ${stats_db_name}.software_citations UNION ALL SELECT * FROM ${stats_db_name}.dataset_citations UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE OR REPLACE VIEW ${stats_db_name}.result_citations AS
SELECT *
FROM ${stats_db_name}.publication_citations
UNION ALL
SELECT *
FROM ${stats_db_name}.software_citations
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_citations
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_citations;
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS SELECT * FROM ${stats_db_name}.publication_classifications UNION ALL SELECT * FROM ${stats_db_name}.software_classifications UNION ALL SELECT * FROM ${stats_db_name}.dataset_classifications UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE OR REPLACE VIEW ${stats_db_name}.result_classifications AS
SELECT *
FROM ${stats_db_name}.publication_classifications
UNION ALL
SELECT *
FROM ${stats_db_name}.software_classifications
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_classifications
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_classifications;
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS SELECT * FROM ${stats_db_name}.publication_concepts UNION ALL SELECT * FROM ${stats_db_name}.software_concepts UNION ALL SELECT * FROM ${stats_db_name}.dataset_concepts UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE OR REPLACE VIEW ${stats_db_name}.result_concepts AS
SELECT *
FROM ${stats_db_name}.publication_concepts
UNION ALL
SELECT *
FROM ${stats_db_name}.software_concepts
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_concepts
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_concepts;
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS SELECT * FROM ${stats_db_name}.publication_languages UNION ALL SELECT * FROM ${stats_db_name}.software_languages UNION ALL SELECT * FROM ${stats_db_name}.dataset_languages UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE OR REPLACE VIEW ${stats_db_name}.result_languages AS
SELECT *
FROM ${stats_db_name}.publication_languages
UNION ALL
SELECT *
FROM ${stats_db_name}.software_languages
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_languages
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_languages;
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS SELECT * FROM ${stats_db_name}.publication_oids UNION ALL SELECT * FROM ${stats_db_name}.software_oids UNION ALL SELECT * FROM ${stats_db_name}.dataset_oids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_oids AS
SELECT *
FROM ${stats_db_name}.publication_oids
UNION ALL
SELECT *
FROM ${stats_db_name}.software_oids
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_oids
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_oids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS SELECT * FROM ${stats_db_name}.publication_pids UNION ALL SELECT * FROM ${stats_db_name}.software_pids UNION ALL SELECT * FROM ${stats_db_name}.dataset_pids UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_pids AS
SELECT *
FROM ${stats_db_name}.publication_pids
UNION ALL
SELECT *
FROM ${stats_db_name}.software_pids
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_pids
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_pids;
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS SELECT * FROM ${stats_db_name}.publication_topics UNION ALL SELECT * FROM ${stats_db_name}.software_topics UNION ALL SELECT * FROM ${stats_db_name}.dataset_topics UNION ALL SELECT * FROM ${stats_db_name}.otherresearchproduct_topics;
CREATE OR REPLACE VIEW ${stats_db_name}.result_topics AS
SELECT *
FROM ${stats_db_name}.publication_topics
UNION ALL
SELECT *
FROM ${stats_db_name}.software_topics
UNION ALL
SELECT *
FROM ${stats_db_name}.dataset_topics
UNION ALL
SELECT *
FROM ${stats_db_name}.otherresearchproduct_topics;
DROP TABLE IF EXISTS ${stats_db_name}.result_organization;
CREATE TABLE ${stats_db_name}.result_organization AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='resultOrganization' and r.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.result_organization AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'resultOrganization'
and r.datainfo.deletedbyinference = false;
DROP TABLE IF EXISTS ${stats_db_name}.result_projects;
CREATE TABLE ${stats_db_name}.result_projects AS select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend FROM ${stats_db_name}.result r JOIN ${stats_db_name}.project_results pr ON r.id=pr.result JOIN ${stats_db_name}.project_tmp p ON p.id=pr.id;
CREATE TABLE ${stats_db_name}.result_projects AS
select pr.result AS id, pr.id AS project, datediff(p.enddate, p.startdate) AS daysfromend
FROM ${stats_db_name}.result r
JOIN ${stats_db_name}.project_results pr ON r.id = pr.result
JOIN ${stats_db_name}.project_tmp p ON p.id = pr.id;
-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_organization COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.result_projects COMPUTE STATISTICS FOR COLUMNS;

119
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step8.sql
View File

@ -5,54 +5,105 @@
-- Datasource table/view and Datasource related tables/views
------------------------------------------------------------
------------------------------------------------------------
-- Datasource table creation & update
-------------------------------------
-- Creating and populating temporary datasource table
DROP TABLE IF EXISTS ${stats_db_name}.datasource_tmp;
CREATE TABLE ${stats_db_name}.datasource_tmp(`id` string, `name` STRING, `type` STRING, `dateofvalidation` STRING, `yearofvalidation` string, `harvested` BOOLEAN, `piwik_id` INT, `latitude` STRING, `longitude`STRING, `websiteurl` STRING, `compatibility` STRING) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties('transactional'='true');
CREATE TABLE ${stats_db_name}.datasource_tmp
(
`id` string,
`name` STRING,
`type` STRING,
`dateofvalidation` STRING,
`yearofvalidation` string,
`harvested` BOOLEAN,
`piwik_id` INT,
`latitude` STRING,
`longitude` STRING,
`websiteurl` STRING,
`compatibility` STRING
) CLUSTERED BY (id) INTO 100 buckets stored AS orc tblproperties ('transactional' = 'true');
-- Insert statement that takes into account the piwik_id of the openAIRE graph
INSERT INTO ${stats_db_name}.datasource_tmp
SELECT substr(d1.id, 4) AS id, officialname.value AS name,
datasourcetype.classname AS type, dateofvalidation.value AS dateofvalidation, date_format(d1.dateofvalidation.value,'yyyy') AS yearofvalidation,
FALSE AS harvested,
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
d1.latitude.value AS latitude, d1.longitude.value AS longitude,
d1.websiteurl.value AS websiteurl, d1.openairecompatibility.classid AS compatibility
SELECT substr(d1.id, 4) AS id,
officialname.value AS name,
datasourcetype.classname AS type,
dateofvalidation.value AS dateofvalidation,
date_format(d1.dateofvalidation.value, 'yyyy') AS yearofvalidation,
FALSE AS harvested,
CASE WHEN d2.piwik_id IS NULL THEN 0 ELSE d2.piwik_id END AS piwik_id,
d1.latitude.value AS latitude,
d1.longitude.value AS longitude,
d1.websiteurl.value AS websiteurl,
d1.openairecompatibility.classid AS compatibility
FROM ${openaire_db_name}.datasource d1
LEFT OUTER JOIN
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
FROM ${openaire_db_name}.datasource
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
WHERE originalidd like "piwik:%") AS d2
ON d1.id = d2.id
WHERE d1.datainfo.deletedbyinference=FALSE;
LEFT OUTER JOIN
(SELECT id, split(originalidd, '\\:')[1] as piwik_id
FROM ${openaire_db_name}.datasource
LATERAL VIEW EXPLODE(originalid) temp AS originalidd
WHERE originalidd like "piwik:%") AS d2
ON d1.id = d2.id
WHERE d1.datainfo.deletedbyinference = FALSE;
-- Updating temporary table with everything that is not based on results -> This is done with the following "dual" table.
-- Creating a temporary dual table that will be removed after the following insert
CREATE TABLE ${stats_db_name}.dual(dummy CHAR(1));
INSERT INTO ${stats_db_name}.dual VALUES('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`, `piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
SELECT 'other', 'Other', 'Repository', NULL, NULL, false, 0, NULL, NULL, NULL, 'unknown' FROM ${stats_db_name}.dual WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name='Unknown Repository');
CREATE TABLE ${stats_db_name}.dual
(
dummy CHAR(1)
);
INSERT INTO ${stats_db_name}.dual
VALUES ('X');
INSERT INTO ${stats_db_name}.datasource_tmp (`id`, `name`, `type`, `dateofvalidation`, `yearofvalidation`, `harvested`,
`piwik_id`, `latitude`, `longitude`, `websiteurl`, `compatibility`)
SELECT 'other',
'Other',
'Repository',
NULL,
NULL,
false,
0,
NULL,
NULL,
NULL,
'unknown'
FROM ${stats_db_name}.dual
WHERE 'other' not in (SELECT id FROM ${stats_db_name}.datasource_tmp WHERE name = 'Unknown Repository');
DROP TABLE ${stats_db_name}.dual;
UPDATE ${stats_db_name}.datasource_tmp SET name='Other' WHERE name='Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp SET yearofvalidation=null WHERE yearofvalidation='-1';
UPDATE ${stats_db_name}.datasource_tmp
SET name='Other'
WHERE name = 'Unknown Repository';
UPDATE ${stats_db_name}.datasource_tmp
SET yearofvalidation=null
WHERE yearofvalidation = '-1';
DROP TABLE IF EXISTS ${stats_db_name}.datasource_languages;
CREATE TABLE ${stats_db_name}.datasource_languages AS SELECT substr(d.id, 4) AS id, langs.languages AS language FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
CREATE TABLE ${stats_db_name}.datasource_languages AS
SELECT substr(d.id, 4) AS id, langs.languages AS language
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.odlanguages.value) langs AS languages;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_oids;
CREATE TABLE ${stats_db_name}.datasource_oids AS SELECT substr(d.id, 4) AS id, oids.ids AS oid FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
CREATE TABLE ${stats_db_name}.datasource_oids AS
SELECT substr(d.id, 4) AS id, oids.ids AS oid
FROM ${openaire_db_name}.datasource d LATERAL VIEW explode(d.originalid) oids AS ids;
DROP TABLE IF EXISTS ${stats_db_name}.datasource_organizations;
CREATE TABLE ${stats_db_name}.datasource_organizations AS SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization FROM ${openaire_db_name}.relation r WHERE r.reltype='datasourceOrganization' and r.datainfo.deletedbyinference=false;
CREATE TABLE ${stats_db_name}.datasource_organizations AS
SELECT substr(r.target, 4) AS id, substr(r.source, 4) AS organization
FROM ${openaire_db_name}.relation r
WHERE r.reltype = 'datasourceOrganization'
and r.datainfo.deletedbyinference = false;
-- datasource sources:
-- where the datasource info have been collected from.
create table if not exists ${stats_db_name}.datasource_sources AS select substr(d.id,4) as id, substr(cf.key, 4) as datasource from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf where d.datainfo.deletedbyinference=false;
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS SELECT datasource AS id, id AS result FROM ${stats_db_name}.result_datasources;
create table if not exists ${stats_db_name}.datasource_sources AS
select substr(d.id, 4) as id, substr(cf.key, 4) as datasource
from ${openaire_db_name}.datasource d lateral view explode(d.collectedfrom) cfrom as cf
where d.datainfo.deletedbyinference = false;
CREATE OR REPLACE VIEW ${stats_db_name}.datasource_results AS
SELECT datasource AS id, id AS result
FROM ${stats_db_name}.result_datasources;
-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.datasource_tmp COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.datasource_languages COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.datasource_oids COMPUTE STATISTICS FOR COLUMNS;
-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.datasource_organizations COMPUTE STATISTICS FOR COLUMNS;

21
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step9.sql
View File

@ -3,10 +3,21 @@
-- Organization table/view and Organization related tables/views
----------------------------------------------------------------
----------------------------------------------------------------
DROP TABLE IF EXISTS ${stats_db_name}.organization;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS SELECT substr(o.id, 4) as id, o.legalname.value as name, o.legalshortname.value as legalshortname, o.country.classid as country
FROM ${openaire_db_name}.organization o WHERE o.datainfo.deletedbyinference=FALSE;
CREATE TABLE IF NOT EXISTS ${stats_db_name}.organization AS
SELECT substr(o.id, 4) as id,
o.legalname.value as name,
o.legalshortname.value as legalshortname,
o.country.classid as country
FROM ${openaire_db_name}.organization o
WHERE o.datainfo.deletedbyinference = FALSE;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS SELECT organization AS id, id AS datasource FROM ${stats_db_name}.datasource_organizations;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_datasources AS
SELECT organization AS id, id AS datasource
FROM ${stats_db_name}.datasource_organizations;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS SELECT id AS project, organization as id FROM ${stats_db_name}.project_organizations;
CREATE OR REPLACE VIEW ${stats_db_name}.organization_projects AS
SELECT id AS project, organization as id
FROM ${stats_db_name}.project_organizations;
-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS;
-- ANALYZE TABLE ${stats_db_name}.organization COMPUTE STATISTICS FOR COLUMNS;

2
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/updateCache.sh
View File

@ -1,4 +1,4 @@
#!/usr/bin/env bash
curl --request GET $1/cache/updateCache
sleep 20h

59
dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/workflow.xml
View File

@ -17,6 +17,14 @@
<name>stats_db_shadow_name</name>
<description>the name of the shadow schema</description>
</property>
<property>
<name>monitor_db_name</name>
<description>the target monitor db name</description>
</property>
<property>
<name>monitor_db_shadow_name</name>
<description>the name of the shadow monitor db</description>
</property>
<property>
<name>stats_tool_api_url</name>
<description>The url of the API of the stats tool. Is used to trigger the cache update.</description>
@ -252,31 +260,6 @@
<param>stats_db_name=${stats_db_name}</param>
<param>openaire_db_name=${openaire_db_name}</param>
</hive2>
<ok to="Step17"/>
<error to="Kill"/>
</action>
<action name="Step17">
<hive2 xmlns="uri:oozie:hive2-action:0.1">
<jdbc-url>${hive_jdbc_url}</jdbc-url>
<script>scripts/step17.sql</script>
<param>stats_db_name=${stats_db_name}</param>
<param>stats_db_shadow_name=${stats_db_shadow_name}</param>
</hive2>
<ok to="Step18"/>
<error to="Kill"/>
</action>
<action name="Step18">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec>
<argument>${stats_db_name}</argument>
<argument>step18.sql</argument>
<argument>${wf:appPath()}/scripts/step18.sql</argument>
<file>impala-shell.sh</file>
</shell>
<ok to="Step19"/>
<error to="Kill"/>
</action>
@ -285,17 +268,31 @@
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>impala-shell.sh</exec>
<exec>finalizedb.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${stats_db_shadow_name}</argument>
<argument>step19.sql</argument>
<argument>${wf:appPath()}/scripts/step19.sql</argument>
<file>impala-shell.sh</file>
<file>finalizedb.sh</file>
</shell>
<ok to="Step20"/>
<ok to="step20-createMonitorDB"/>
<error to="Kill"/>
</action>
<action name="Step20">
<action name="step20-createMonitorDB">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>
<exec>monitor.sh</exec>
<argument>${stats_db_name}</argument>
<argument>${monitor_db_name}</argument>
<argument>${monitor_db_shadow_name}</argument>
<argument>${wf:appPath()}/scripts/step20-createMonitorDB.sql</argument>
<file>monitor.sh</file>
</shell>
<ok to="Step21"/>
<error to="Kill"/>
</action>
<action name="Step21">
<shell xmlns="uri:oozie:shell-action:0.1">
<job-tracker>${jobTracker}</job-tracker>
<name-node>${nameNode}</name-node>