From 33e2ebeaaa85af625ddac4ddd461ef832a0eeb70 Mon Sep 17 00:00:00 2001 From: "miriam.baglioni" Date: Tue, 23 Jun 2020 11:07:42 +0200 Subject: [PATCH] fix to the mapper, and changed of the json for testing --- .../eu/dnetlib/dhp/oa/graph/dump/Constants.java | 13 +++++++------ .../dnetlib/dhp/oa/graph/dump/gcat/Mapper.java | 16 ++++++++-------- .../dnetlib/dhp/oa/graph/dump/gcat/software.json | 4 ++-- 3 files changed, 17 insertions(+), 16 deletions(-) diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java index 5f0c4d0132..788d1c50c7 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/Constants.java @@ -11,6 +11,7 @@ public class Constants { public static String DATASET_URL = "https://beta.risis.openaire.eu/search/dataset?datasetId="; public static String SOFTWARE_URL = "https://beta.risis.openaire.eu/search/software?softwareId="; public static String ORP_URL = "https://beta.risis.openaire.eu/search/other?orpId="; + public static String DEFAULT_LICENCE_ID = "notspecified"; public static final Map accessRightsCoarMap = Maps.newHashMap(); public static final Map coarCodeLabelMap = Maps.newHashMap(); public static final Map gcatCatalogue = Maps.newHashMap(); @@ -34,11 +35,11 @@ public class Constants { static { gcatCatalogue.put("OPEN", "OPEN"); - accessRightsCoarMap.put("RESTRICTED", "RESTRICTED"); - accessRightsCoarMap.put("OPEN SOURCE", "OPEN"); - accessRightsCoarMap.put("CLOSED", "CLOSED"); - accessRightsCoarMap.put("EMBARGO", "EMBARGO"); - accessRightsCoarMap.put("UNKNOWN", "UNKNOWN"); - accessRightsCoarMap.put("OTHER", "UNKNOWN"); + gcatCatalogue.put("RESTRICTED", "RESTRICTED"); + gcatCatalogue.put("OPEN SOURCE", "OPEN"); + gcatCatalogue.put("CLOSED", "CLOSED"); + gcatCatalogue.put("EMBARGO", "EMBARGO"); + gcatCatalogue.put("UNKNOWN", "UNKNOWN"); + gcatCatalogue.put("OTHER", "UNKNOWN"); } } diff --git a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/gcat/Mapper.java b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/gcat/Mapper.java index 9478b49515..b3aae322af 100644 --- a/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/gcat/Mapper.java +++ b/dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/gcat/Mapper.java @@ -44,17 +44,13 @@ public class Mapper implements Serializable { externals.add(KeyValue.newInstance("result type", "dataset")); break; case "software": - eu.dnetlib.dhp.schema.oaf.Software is = (eu.dnetlib.dhp.schema.oaf.Software) input; Optional .ofNullable(is.getCodeRepositoryUrl()) .ifPresent(value -> urlSet.add(value.getValue())); Optional .ofNullable(is.getDocumentationUrl()) - .ifPresent( - value -> value - .stream() - .map(v -> urlSet.add(v.getValue()))); + .ifPresent(value -> value.forEach(v -> urlSet.add(v.getValue()))); Optional .ofNullable(is.getProgrammingLanguage()) @@ -71,6 +67,8 @@ public class Mapper implements Serializable { } + out.setLicence_id(Constants.DEFAULT_LICENCE_ID); + Optional .ofNullable(input.getAuthor()) .ifPresent( @@ -106,8 +104,7 @@ public class Mapper implements Serializable { .ofNullable(input.getDescription()) .ifPresent(value -> - getDescription(out, externals, value) - ); + getDescription(out, externals, value)); Optional .ofNullable(input.getEmbargoenddate()) @@ -181,6 +178,10 @@ public class Mapper implements Serializable { KeyValue .newInstance("subject", s.getQualifier().getClassid() + ":" + s.getValue())))); + Optional + .ofNullable(input.getResourcetype()) + .ifPresent(value -> externals.add(KeyValue.newInstance("resource type", value.getClassname()))); + cfSet.forEach(cf -> externals.add(KeyValue.newInstance("collected from", cf))); hbSet.forEach(hb -> externals.add(KeyValue.newInstance("hosted by", hb))); urlSet.forEach(url -> externals.add(KeyValue.newInstance("url", url))); @@ -200,5 +201,4 @@ public class Mapper implements Serializable { it.forEachRemaining(v -> externals.add(KeyValue.newInstance("description", v.getValue()))); } - } diff --git a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/gcat/software.json b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/gcat/software.json index 88c8cae3c8..e35935c0d4 100644 --- a/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/gcat/software.json +++ b/dhp-workflows/dhp-graph-mapper/src/test/resources/eu/dnetlib/dhp/oa/graph/dump/gcat/software.json @@ -1,6 +1,6 @@ {"author":[],"bestaccessright":{"classid":"UNKNOWN","classname":"not available","schemeid":"dnet:access_modes","schemename":"dnet:access_modes"},"codeRepositoryUrl":null,"collectedfrom":[{"dataInfo":null,"key":"10|rest________::b8e502674c3c3499d5374e9b2ea6d8d5","value":"bio.tools"}],"context":[{"dataInfo":[{"deletedbyinference":false,"inferenceprovenance":"bulktagging","inferred":true,"invisible":false,"provenanceaction":{"classid":"community:subject","classname":"Bulktagging for Community - Subject","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":null}],"id":"risis"}],"contributor":[],"country":[],"coverage":[],"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"dateofacceptance":{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"2017-05-01"},"dateofcollection":"","dateoftransformation":"2020-05-27T11:24:44.113Z","description":[{"dataInfo":{"deletedbyinference":false,"inferenceprovenance":"","inferred":false,"invisible":false,"provenanceaction":{"classid":"sysimport:crosswalk:datasetarchive","classname":"sysimport:crosswalk:datasetarchive","schemeid":"dnet:provenanceActions","schemename":"dnet:provenanceActions"},"trust":"0.9"},"value":"Chilibot searches the PubMed literature database based on specific relationships between proteins, genes, or keywords. 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