forked from D-Net/dnet-hadoop
continue mapping from crossref to OAF
This commit is contained in:
parent
eef60bb9f4
commit
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@ -1,70 +1,85 @@
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package eu.dnetlib.doiboost.crossref
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package eu.dnetlib.doiboost.crossref
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import eu.dnetlib.dhp.schema.oaf._
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import eu.dnetlib.dhp.schema.oaf._
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import eu.dnetlib.dhp.utils.DHPUtils
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import org.json4s
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import org.json4s
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import org.json4s.DefaultFormats
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import org.json4s.DefaultFormats
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import org.json4s.jackson.JsonMethods._
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import org.json4s.jackson.JsonMethods._
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import org.slf4j.Logger
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import org.slf4j.Logger
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import scala.collection.JavaConverters._
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import scala.collection.JavaConverters._
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class Crossref2Oaf {
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class Crossref2Oaf {
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//STATIC STRING
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val MAG = "MAG"
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val ORCID = "ORCID"
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val CROSSREF = "Crossref"
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val UNPAYWALL = "UnpayWall"
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val GRID_AC = "grid.ac"
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val WIKPEDIA = "wikpedia"
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val doiBoostNSPREFIX = "doiboost____"
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val OPENAIRE_PREFIX = "openaire____"
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val SEPARATOR = "::"
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val DNET_LANGUAGES = "dnet:languages"
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val PID_TYPES = "dnet:pid_types"
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val PID_TYPES = "dnet:pid_types"
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val mappingCrossrefType = Map(
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val mappingCrossrefType = Map(
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"book-section" -> "publication",
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"book-section" -> "publication",
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"book" -> "publication",
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"book" -> "publication",
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"book-chapter" -> "publication",
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"book-chapter" -> "publication",
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"book-part" -> "publication",
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"book-part" -> "publication",
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"book-series" -> "publication",
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"book-series" -> "publication",
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"book-set" -> "publication",
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"book-set" -> "publication",
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"book-track" -> "publication",
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"book-track" -> "publication",
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"edited-book" -> "publication",
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"edited-book" -> "publication",
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"reference-book" -> "publication",
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"reference-book" -> "publication",
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"monograph" -> "publication",
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"monograph" -> "publication",
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"journal-article" -> "publication",
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"journal-article" -> "publication",
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"dissertation" -> "publication",
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"dissertation" -> "publication",
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"other" -> "publication",
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"other" -> "publication",
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"peer-review" -> "publication",
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"peer-review" -> "publication",
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"proceedings" -> "publication",
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"proceedings" -> "publication",
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"proceedings-article" -> "publication",
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"proceedings-article" -> "publication",
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"reference-entry" -> "publication",
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"reference-entry" -> "publication",
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"report" -> "publication",
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"report" -> "publication",
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"report-series" -> "publication",
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"report-series" -> "publication",
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"standard" -> "publication",
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"standard" -> "publication",
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"standard-series" -> "publication",
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"standard-series" -> "publication",
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"posted-content"-> "publication",
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"posted-content" -> "publication",
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"dataset" -> "dataset"
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"dataset" -> "dataset"
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)
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)
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val mappingCrossrefSubType = Map(
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val mappingCrossrefSubType = Map(
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"book-section" -> "0013 Part of book or chapter of book",
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"book-section" -> "0013 Part of book or chapter of book",
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"book" -> "0002 Book",
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"book" -> "0002 Book",
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"book-chapter" -> "0013 Part of book or chapter of book",
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"book-chapter" -> "0013 Part of book or chapter of book",
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"book-part" -> "0013 Part of book or chapter of book",
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"book-part" -> "0013 Part of book or chapter of book",
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"book-series" -> "0002 Book",
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"book-series" -> "0002 Book",
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"book-set" -> "0002 Book",
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"book-set" -> "0002 Book",
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"book-track" -> "0002 Book",
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"book-track" -> "0002 Book",
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"edited-book" -> "0002 Book",
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"edited-book" -> "0002 Book",
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"reference-book" -> "0002 Book",
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"reference-book" -> "0002 Book",
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"monograph" -> "0002 Book",
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"monograph" -> "0002 Book",
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"journal-article" -> "0001 Article",
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"journal-article" -> "0001 Article",
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"dissertation" -> "0006 Doctoral thesis",
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"dissertation" -> "0006 Doctoral thesis",
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"other" -> "0038 Other literature type",
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"other" -> "0038 Other literature type",
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"peer-review" -> "0015 Review",
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"peer-review" -> "0015 Review",
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"proceedings" -> "0004 Conference object",
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"proceedings" -> "0004 Conference object",
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"proceedings-article" -> "0004 Conference object",
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"proceedings-article" -> "0004 Conference object",
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"reference-entry" -> "0013 Part of book or chapter of book",
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"reference-entry" -> "0013 Part of book or chapter of book",
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"report" -> "0017 Report",
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"report" -> "0017 Report",
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"report-series" -> "0017 Report",
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"report-series" -> "0017 Report",
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"standard" -> "0038 Other literature type",
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"standard" -> "0038 Other literature type",
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"standard-series" -> "0038 Other literature type",
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"standard-series" -> "0038 Other literature type",
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"dataset"-> "0021 Dataset",
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"dataset" -> "0021 Dataset",
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"preprint"-> "0016 Preprint",
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"preprint" -> "0016 Preprint",
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"report"-> "0017 Report"
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"report" -> "0017 Report"
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)
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)
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def convert(input: String, logger:Logger): Result = {
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def convert(input: String, logger: Logger): Result = {
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implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
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implicit lazy val formats: DefaultFormats.type = org.json4s.DefaultFormats
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lazy val json: json4s.JValue = parse(input)
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lazy val json: json4s.JValue = parse(input)
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val objectType = (json \ "type").extractOrElse[String](null)
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val objectType = (json \ "type").extractOrElse[String](null)
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@ -74,42 +89,72 @@ class Crossref2Oaf {
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val result = generateItemFromType(objectType, objectSubType)
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val result = generateItemFromType(objectType, objectSubType)
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if (result == null)
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if (result == null)
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return result
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return result
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val cOBJCategory = mappingCrossrefSubType.getOrElse(objectType,mappingCrossrefSubType.getOrElse(objectSubType,"0038 Other literature type"));
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val cOBJCategory = mappingCrossrefSubType.getOrElse(objectType, mappingCrossrefSubType.getOrElse(objectSubType, "0038 Other literature type"));
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logger.debug(mappingCrossrefType(objectType))
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logger.debug(cOBJCategory)
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logger.info(mappingCrossrefType(objectType))
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//MAPPING Crossref DOI into PID
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logger.info(cOBJCategory)
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val doi: String = (json \ "DOI").extract[String]
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val doi:String = (json \ "DOI").extract[String]
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val pid = new StructuredProperty()
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pid.setValue(doi)
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pid.setQualifier(new Qualifier)
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result.setPid(List(createSP(doi,"doi", PID_TYPES)).asJava)
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logger.info(doi)
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result.setPid(List(createSP(doi, "doi", PID_TYPES)).asJava)
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//MAPPING Crossref DOI into OriginalId
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result.setOriginalId(List(doi).asJava)
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//Set identifier as {50|60} | doiboost____::md5(DOI)
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result.setId(generateIdentifier(result, doi))
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// Add DataInfo
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result.setDataInfo(generateDataInfo())
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result.setLastupdatetimestamp((json \"indexed" \"timestamp").extract[Long])
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result.setDateofcollection((json \"indexed" \"date-time").extract[String])
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result
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result
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}
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}
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def createSP(value:String, classId:String, schemeId:String ):StructuredProperty = {
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def generateIdentifier(oaf: Result, doi:String): String = {
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val id = DHPUtils.md5(doi.toLowerCase)
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if (oaf.isInstanceOf[Dataset])
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return s"60|${doiBoostNSPREFIX}${SEPARATOR}${id}"
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s"50|${doiBoostNSPREFIX}${SEPARATOR}${id}"
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}
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def generateDataInfo(): DataInfo = {
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val di =new DataInfo
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di.setDeletedbyinference(false)
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di.setInferred(false)
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di.setInvisible(false)
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di.setTrust("0.9")
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di.setProvenanceaction(createQualifier("sysimport:actionset", "dnet:provenanceActions"))
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di
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}
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def createSP(value: String, classId: String, schemeId: String): StructuredProperty = {
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val sp = new StructuredProperty
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val sp = new StructuredProperty
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val q = new Qualifier
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sp.setQualifier(createQualifier(classId, schemeId))
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q.setClassid(classId)
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q.setClassname(classId)
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q.setSchemeid(schemeId)
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q.setSchemename(schemeId )
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sp.setValue(value)
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sp.setValue(value)
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sp.setQualifier(q)
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sp
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sp
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}
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}
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def createQualifier(cls:String, sch:String):Qualifier = {
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val q = new Qualifier
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q.setClassid(cls)
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q.setClassname(cls)
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q.setSchemeid(sch)
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q.setSchemename(sch)
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q
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}
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def generateItemFromType (objectType:String, objectSubType:String):Result = {
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if (mappingCrossrefType.contains(objectType)){
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def generateItemFromType(objectType: String, objectSubType: String): Result = {
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if (mappingCrossrefType.contains(objectType)) {
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if (mappingCrossrefType(objectType).equalsIgnoreCase("publication"))
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if (mappingCrossrefType(objectType).equalsIgnoreCase("publication"))
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return new Publication()
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return new Publication()
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if (mappingCrossrefType(objectType).equalsIgnoreCase("dataset"))
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if (mappingCrossrefType(objectType).equalsIgnoreCase("dataset"))
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return new Dataset()
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return new Dataset()
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}
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}
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null
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null
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}
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}
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@ -6,5 +6,6 @@ log4j.appender.A1=org.apache.log4j.ConsoleAppender
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# A1 uses PatternLayout.
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# A1 uses PatternLayout.
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log4j.logger.org = ERROR
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log4j.logger.org = ERROR
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log4j.logger.eu.dnetlib = DEBUG
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log4j.appender.A1.layout=org.apache.log4j.PatternLayout
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log4j.appender.A1.layout=org.apache.log4j.PatternLayout
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log4j.appender.A1.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
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log4j.appender.A1.layout.ConversionPattern=%-4r [%t] %-5p %c %x - %m%n
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