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added test method to check the creation of relations between context and projects

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Miriam Baglioni 2021-04-09 12:49:51 +02:00
parent 6b51b69cf7
commit 04a0d1ba6e
1 changed files with 123 additions and 116 deletions
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239
dhp-workflows/dhp-graph-mapper/src/test/java/eu/dnetlib/dhp/oa/graph/dump/complete/CreateRelationTest.java
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@ -5,18 +5,18 @@ import java.util.*;
import java.util.function.Consumer;
import java.util.stream.Collectors;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Project;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import com.google.gson.Gson;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.dump.oaf.graph.Relation;
import eu.dnetlib.dhp.schema.oaf.Datasource;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.utils.DHPUtils;
public class CreateRelationTest {
@ -206,7 +206,7 @@ public class CreateRelationTest {
" <param name=\"suggestedAcknowledgement\"/>\n" +
" <param name=\"zenodoCommunity\">oac_ni</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"ni::projects\" label=\"NI Content providers\"/>\n" +
" <category claim=\"false\" id=\"ni::projects\" label=\"NI Content providers\"/>\n" +
" <category claim=\"false\" id=\"ni::contentproviders\" label=\"NI Content providers\">\n" +
" <concept claim=\"false\" id=\"ni::contentproviders::1\" label=\"OpenNeuro\">\n" +
" <param name=\"openaireId\">re3data_____::5b9bf9171d92df854cf3c520692e9122</param>\n" +
@ -442,55 +442,63 @@ public class CreateRelationTest {
" <param name=\"zenodoCommunity\">oaa_elixir-gr</param>\n" +
" <param name=\"creationdate\">2018-03-01T12:00:00</param>\n" +
" <category claim=\"false\" id=\"elixir-gr::projects\" label=\"ELIXIR GR Projects\">\n" +
" <concept claim=\"false\" id=\"ni::projects::12\" label=\"\">\n" +
" <param name=\"projectfullname\">BIO-INFORMATICS RESEARCH NETWORK COORDINATING CENTER (BIRN-CC)</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1U24RR025736-01</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::13\" label=\"\">\n" +
" <param name=\"projectfullname\">COLLABORATIVE RESEARCH: The Cognitive Neuroscience of Category Learning</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">0223843</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::14\" label=\"\">\n" +
" <param name=\"projectfullname\">The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">5R01MH082795-05</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::15\" label=\"\">\n" +
" <param name=\"projectfullname\">Fragmented early life environmental and emotional / cognitive vulnerabilities</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1P50MH096889-01A1</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::16\" label=\"\">\n" +
" <param name=\"projectfullname\">Enhancement of the 1000 Functional Connectome Project</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1R03MH096321-01A1</param>\n" +
" <param name=\"funder\">TUBITAK</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::17\" label=\"\">\n" +
" <param name=\"projectfullname\">CRCNS Data Sharing: An open data repository for cognitive neuroscience: The OpenfMRI Project</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1131441</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
" <param name=\"projectfullname\">Enhancing Human Cortical Plasticity: Visual Psychophysics and fMRI</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">0121950</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
" <param name=\"projectfullname\">Transforming statistical methodology for neuroimaging meta-analysis.</param>\n" +
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">100309</param>\n" +
" <param name=\"funder\">WT</param>\n" +
" </concept>\n" +
" </category>" +
" <concept claim=\"false\" id=\"ni::projects::12\" label=\"\">\n" +
" <param name=\"projectfullname\">BIO-INFORMATICS RESEARCH NETWORK COORDINATING CENTER (BIRN-CC)</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1U24RR025736-01</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::13\" label=\"\">\n" +
" <param name=\"projectfullname\">COLLABORATIVE RESEARCH: The Cognitive Neuroscience of Category Learning</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">0223843</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::14\" label=\"\">\n" +
" <param name=\"projectfullname\">The Cognitive Atlas: Developing an Interdisciplinary Knowledge Base Through Socia</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">5R01MH082795-05</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::15\" label=\"\">\n" +
" <param name=\"projectfullname\">Fragmented early life environmental and emotional / cognitive vulnerabilities</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1P50MH096889-01A1</param>\n" +
" <param name=\"funder\">NIH</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::16\" label=\"\">\n" +
" <param name=\"projectfullname\">Enhancement of the 1000 Functional Connectome Project</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1R03MH096321-01A1</param>\n" +
" <param name=\"funder\">TUBITAK</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::17\" label=\"\">\n" +
" <param name=\"projectfullname\">CRCNS Data Sharing: An open data repository for cognitive neuroscience: The OpenfMRI Project</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">1131441</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
" <param name=\"projectfullname\">Enhancing Human Cortical Plasticity: Visual Psychophysics and fMRI</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">0121950</param>\n" +
" <param name=\"funder\">NSF</param>\n" +
" </concept>\n" +
" <concept claim=\"false\" id=\"ni::projects::18\" label=\"\">\n" +
" <param name=\"projectfullname\">Transforming statistical methodology for neuroimaging meta-analysis.</param>\n"
+
" <param name=\"acronym\"/>\n" +
" <param name=\"CD_PROJECT_NUMBER\">100309</param>\n" +
" <param name=\"funder\">WT</param>\n" +
" </concept>\n" +
" </category>" +
" <category claim=\"false\" id=\"elixir-gr::contentproviders\" label=\"Elixir-GR Content providers\">\n"
+
@ -627,88 +635,87 @@ public class CreateRelationTest {
final Consumer<ContextInfo> consumer = ci -> cInfoList.add(ci);
queryInformationSystem
.getContextRelation(consumer, "projects", ModelSupport.getIdPrefix(Project.class));
.getContextRelation(consumer, "projects", ModelSupport.getIdPrefix(Project.class));
cInfoList.forEach(c -> System.out.println(new Gson().toJson(c)));
List<Relation> rList = new ArrayList<>();
cInfoList.forEach(cInfo -> Process.getRelation(cInfo).forEach(rList::add));
Assertions.assertEquals(44 , rList.size());
Assertions.assertEquals(44, rList.size());
Assertions
.assertFalse(
rList
.stream()
.map(r -> r.getSource().getId())
.collect(Collectors.toSet())
.contains(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))));
.assertFalse(
rList
.stream()
.map(r -> r.getSource().getId())
.collect(Collectors.toSet())
.contains(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("dh-ch"))));
Assertions
.assertEquals(
2,
rList
.stream()
.filter(
r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.collect(Collectors.toList())
.size());
.assertEquals(
2,
rList
.stream()
.filter(
r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.collect(Collectors.toList())
.size());
Assertions
.assertEquals(
2,
rList
.stream()
.filter(
r -> r
.getTarget()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.collect(Collectors.toList())
.size());
.assertEquals(
2,
rList
.stream()
.filter(
r -> r
.getTarget()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.collect(Collectors.toList())
.size());
Set<String> tmp = rList
.stream()
.filter(
r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.map(r -> r.getTarget().getId())
.collect(Collectors.toSet());
.stream()
.filter(
r -> r
.getSource()
.getId()
.equals(
String
.format(
"%s|%s::%s", Constants.CONTEXT_ID,
Constants.CONTEXT_NS_PREFIX,
DHPUtils.md5("clarin"))))
.map(r -> r.getTarget().getId())
.collect(Collectors.toSet());
Assertions
.assertTrue(
tmp.contains("40|corda__h2020::b5a4eb56bf84bef2ebc193306b4d423f") &&
tmp.contains("40|corda_______::ef782b2d85676aa3e5a907427feb18c4") );
.assertTrue(
tmp.contains("40|corda__h2020::b5a4eb56bf84bef2ebc193306b4d423f") &&
tmp.contains("40|corda_______::ef782b2d85676aa3e5a907427feb18c4"));
rList.forEach(rel -> {
if (rel.getSource().getId().startsWith("40|")){
if (rel.getSource().getId().startsWith("40|")) {
String proj = rel.getSource().getId().substring(3);
Assertions.assertTrue(proj.substring(0, proj.indexOf("::")).length() == 12);
}