136 lines
11 KiB
XML
136 lines
11 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012753</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Small Molecule Pathway Database</r3d:repositoryName>
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<r3d:additionalName language="eng">SMPDB</r3d:additionalName>
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<r3d:additionalName language="eng">formerly: PathBank</r3d:additionalName>
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<r3d:repositoryURL>http://smpdb.ca/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/fairsharing.y1zyaq</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000104</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_02777</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_004844</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_143926</r3d:repositoryIdentifier>
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<r3d:description language="eng">The Small Molecule Pathway Database (SMPDB) contains small molecule pathways found in humans, which are presented visually. All SMPDB pathways include information on the relevant organs, subcellular compartments, protein cofactors, protein locations, metabolite locations, chemical structures and protein quaternary structures. Accompanying data includes detailed descriptions and references, providing an overview of the pathway, condition or processes depicted in each diagram.</r3d:description>
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<r3d:repositoryContact>https://smpdb.ca/contact</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="">Pathways 98.632</r3d:size>
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<r3d:startDate>2009</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20101 Biochemistry</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20401 Metabolism, Biochemistry and Genetics of Microorganisms</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>http://smpdb.ca/about</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>chemoinformatics</r3d:keyword>
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<r3d:keyword>drug-action pathway</r3d:keyword>
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<r3d:keyword>metabolic disease pathway</r3d:keyword>
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<r3d:keyword>metabolic pathway</r3d:keyword>
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<r3d:keyword>metabolite signaling pathway</r3d:keyword>
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<r3d:keyword>metabolomics</r3d:keyword>
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<r3d:keyword>molecular biology</r3d:keyword>
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<r3d:keyword>proteomics</r3d:keyword>
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<r3d:keyword>systems biology</r3d:keyword>
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<r3d:keyword>transcriptomics</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Alberta Innovates</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://albertainnovates.ca/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Canadian Institutes of Health Research</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">CIHR</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="fra">IRSC</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="fra">Instituts de recherche en santé du Canada</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.cihr-irsc.gc.ca/</r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_012838</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_45689</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate>2010</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">The Metabolomics Innovation Centre</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">TMIC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.metabolomicscentre.ca/</r3d:institutionURL>
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<r3d:responsibilityStartDate>2010</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Alberta</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL></r3d:institutionURL>
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<r3d:institutionIdentifier>RRID:SCR_001853</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_10148</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Alberta, Departments of Computing Science and Biological Sciences, Wishart Research Group</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.wishartlab.com/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.wishartlab.com/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>What is SMPDB?</r3d:policyName>
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<r3d:policyURL>http://smpdb.ca/about</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>ODC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://smpdb.ca/about#citing</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>unknown</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://smpdb.ca/about#citing</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks>Each small molecule is hyperlinked to detailed descriptions contained in the Human Metabolome Database - HMDB or DrugBank and each protein_complex or enzyme complex is hyperlinked to UniProt.
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A pathway drawing tool called PathWhiz (http://smpdb.ca/pathwhiz) is available for public use.
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SMP-MAP can be used for multiple entity highlighting and mapping.</r3d:remarks>
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<r3d:entryDate>2018-07-05</r3d:entryDate>
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<r3d:lastUpdate>2021-09-10</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |