114 lines
9.0 KiB
XML
114 lines
9.0 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012731</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Pathway Commons</r3d:repositoryName>
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<r3d:repositoryURL>https://www.pathwaycommons.org/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.5y3gdd</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_02761</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_002103</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-20884</r3d:repositoryIdentifier>
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<r3d:description language="eng">Pathway Commons is a convenient point of access to biological pathway information collected from public pathway databases. Information is sourced from public pathway databases and is readily searched, visualized, and downloaded. The data is freely available under the license terms of each contributing database.</r3d:description>
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<r3d:repositoryContact>https://groups.google.com/forum/#!forum/pathway-commons-help/join</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2013</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>http://www.pathwaycommons.org/pc/about.do</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>DNA</r3d:keyword>
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<r3d:keyword>RNA</r3d:keyword>
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<r3d:keyword>biochemistry</r3d:keyword>
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<r3d:keyword>cell-to-cell communication</r3d:keyword>
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<r3d:keyword>genetic interations</r3d:keyword>
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<r3d:keyword>genetics</r3d:keyword>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>metabolic pathways</r3d:keyword>
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<r3d:keyword>molecular interactions</r3d:keyword>
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<r3d:keyword>molecules</r3d:keyword>
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<r3d:keyword>protein</r3d:keyword>
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<r3d:keyword>proteomics</r3d:keyword>
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<r3d:keyword>signaling pathways</r3d:keyword>
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<r3d:keyword>system biology</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Harvard Medical School, Dana-Farber Cancer Institute, Sander Lab</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.sanderlab.org/#/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.sanderlab.org/#/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Oregon Health & Science University</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">OHSU</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ohsu.edu/xd/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:009avj582</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_009665</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ohsu.edu/xd/about/contact-us/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Toronto, Bader Lab</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://baderlab.org/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://baderlab.org/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Toronto, Memorial Sloan-Kettering Cancer Center , Computational Biology Center</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">MSKCC, cBio</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://cbio.mskcc.org/about/index.html</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://cbio.mskcc.org/contact-cbio/index.html</r3d:institutionContact>
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</r3d:institution>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.pathwaycommons.org/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>other</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="REST">http://www.pathwaycommons.org/pc2/home</r3d:api>
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<r3d:pidSystem>other</r3d:pidSystem>
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<r3d:citationGuidelineURL></r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:syndication syndicationType="RSS">http://groups.google.com/group/pathway-commons-announcements/feed/rss_v2_0_msgs.xml</r3d:syndication>
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<r3d:remarks>Pathway Commons software is build in GitHub: https://github.com/PathwayCommons/pcviz/</r3d:remarks>
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<r3d:entryDate>2018-07-04</r3d:entryDate>
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<r3d:lastUpdate>2021-06-16</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |