145 lines
10 KiB
XML
145 lines
10 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012690</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Network Data Exchange</r3d:repositoryName>
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<r3d:additionalName language="eng">NDEx</r3d:additionalName>
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<r3d:repositoryURL>https://home.ndexbio.org/index/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.8nq9t6</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_29036</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_003943</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nlx_158334</r3d:repositoryIdentifier>
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<r3d:description language="eng">The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge.
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The NDEx Project maintains a free, public website; alternatively, users can also decide to run their own copies of the NDEx Server software in cases where the stored networks must be kept in a highly secure environment (such as for HIPAA compliance) or where high application load is incompatible with a shared public resource.</r3d:description>
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<r3d:repositoryContact>https://home.ndexbio.org/contact-us/</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate></r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>https://home.ndexbio.org/about-ndex/</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Configuration data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Networkbased data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Source code</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>COVID-19</r3d:keyword>
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<r3d:keyword>biological networks</r3d:keyword>
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<r3d:keyword>cancer</r3d:keyword>
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<r3d:keyword>molecular interaction</r3d:keyword>
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<r3d:keyword>pathway model</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">NDEx Project</r3d:institutionName>
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<r3d:institutionCountry>AAA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://home.ndexbio.org/index/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">The Regents of the University of California, The Cytoscape Consortium</r3d:institutionName>
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<r3d:institutionCountry>AAA</r3d:institutionCountry>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://cytoscape.org/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Nature Scientific Data - Data Policies</r3d:policyName>
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<r3d:policyURL>https://www.nature.com/sdata/policies/data-policies</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>Quick Start guide</r3d:policyName>
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<r3d:policyURL>https://home.ndexbio.org/quick-start/</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>Terms, License and Sources</r3d:policyName>
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<r3d:policyURL>https://home.ndexbio.org/disclaimer-license/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:databaseLicense>
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<r3d:databaseLicenseName>BSD</r3d:databaseLicenseName>
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<r3d:databaseLicenseURL>https://opensource.org/licenses/BSD-3-Clause</r3d:databaseLicenseURL>
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</r3d:databaseLicense>
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<r3d:dataAccess>
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<r3d:dataAccessType>closed</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>other</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Apache License 2.0</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/Apache-2.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>BSD</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://home.ndexbio.org/disclaimer-license/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>BSD</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/BSD-3-Clause</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/CDDL-1.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/EPL-1.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/GPL-3.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/LGPL-3.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/MIT</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://opensource.org/licenses/MPL-2.0</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Publishing in NDEx</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>https://home.ndexbio.org/publishing-in-ndex/</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:software>
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<r3d:softwareName>other</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="REST">https://home.ndexbio.org/using-the-ndex-server-api/</r3d:api>
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<r3d:pidSystem>DOI</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://home.ndexbio.org/about-ndex/</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks>NDEx – The Network Data Exchange is covered by Clarivate Data Citation Index . NDEx is a Scientific Data - Nature Reommended Data Repository.</r3d:remarks>
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<r3d:entryDate>2018-05-28</r3d:entryDate>
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<r3d:lastUpdate>2021-08-11</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |