104 lines
8.0 KiB
XML
104 lines
8.0 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012575</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Vega</r3d:repositoryName>
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<r3d:additionalName language="eng">Vertebrate Genome Annotation database</r3d:additionalName>
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<r3d:repositoryURL>http://vega.archive.ensembl.org/index.html</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.mr293q</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_19068</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_007907</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-03626</r3d:repositoryIdentifier>
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<r3d:description language="eng">A repository for high-quality gene models produced by the manual annotation of vertebrate genomes. The final update of Vega, version 68, was released in February 2017 and is now archived at vega.archive.ensembl.org. We plan to maintain this resource until Feb 2020.</r3d:description>
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<r3d:repositoryContact>http://vega.archive.ensembl.org/Help/Contact/</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2017-02</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>http://vega.archive.ensembl.org/info/about/data_access.html</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>chromosome</r3d:keyword>
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<r3d:keyword>dog</r3d:keyword>
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<r3d:keyword>genomic sequences</r3d:keyword>
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<r3d:keyword>gorilla</r3d:keyword>
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<r3d:keyword>human</r3d:keyword>
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<r3d:keyword>mouse</r3d:keyword>
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<r3d:keyword>pig</r3d:keyword>
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<r3d:keyword>wallaby</r3d:keyword>
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<r3d:keyword>zebrafish</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Biotechnology and Biological Sciences Research Council</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BBSRC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.bbsrc.ac.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>webmaster@bbsrc.ac.uk</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Instiutes of Health</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.nih.gov/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Wellcome Trust Sanger Institute</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.sanger.ac.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://www.sanger.ac.uk/about/who-we-are/sanger-institute/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Data sharing policy</r3d:policyName>
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<r3d:policyURL>ftp://ftp.sanger.ac.uk/pub/00-README.data-sharing-policy.txt</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://vega.archive.ensembl.org/index.html</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>MySQL</r3d:softwareName>
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</r3d:software>
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<r3d:versioning></r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.sanger.ac.uk/pub/vega/human/</r3d:api>
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<r3d:api apiType="REST">http://rest.ensembl.org/</r3d:api>
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<r3d:citationGuidelineURL>http://vega.archive.ensembl.org/Help/Faq?id=392</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks>Tools using VEGA:
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Otter (http://www.sanger.ac.uk/science/tools/otter/) enables human annotators to compare numerous sources of evidence and then to build gene objects with multiple alternative transcripts.
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The SeqTools package (http://www.sanger.ac.uk/science/tools/seqtools/) contains three tools for visualising sequence alignments: Blixem, Dotter and Belvu.</r3d:remarks>
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<r3d:entryDate>2017-12-14</r3d:entryDate>
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<r3d:lastUpdate>2021-09-22</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |