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RegistriesOverlap
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RegistriesOverlap/data/re3dataRecords/r3d100012459.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100012459</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">MicrosporidiaDB</r3d:repositoryName>
<r3d:repositoryURL>http://microsporidiadb.org/micro/</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.vk0ax6</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>MIR:00000152</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>OMICS_03153</r3d:repositoryIdentifier>
<r3d:description language="eng">MicrosporidiaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the phylum Microsporidia. In its first iteration (released in early 2010), MicrosporidiaDB contains the genomes of two Encephalitozoon species (see below). MicrosporidiaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers. The database includes supplemental bioinformatics analyses and a web interface for data-mining.</r3d:description>
<r3d:repositoryContact>http://microsporidiadb.org/micro/contact.do</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated="2017-12-06">50 data sets</r3d:size>
<r3d:startDate>2009</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:missionStatementURL>http://microsporidiadb.org/micro/showXmlDataContent.do?name=XmlQuestions.About</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:keyword>Chip sequencing</r3d:keyword>
<r3d:keyword>DNA</r3d:keyword>
<r3d:keyword>FAIR</r3d:keyword>
<r3d:keyword>RNA</r3d:keyword>
<r3d:keyword>genetics</r3d:keyword>
<r3d:keyword>microarray</r3d:keyword>
<r3d:keyword>proteomics</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">National Institute of Allergy and Infectious Diseases, Bioinformatics Resource Centers</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">BRC</r3d:institutionAdditionalName>
<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.niaid.nih.gov/research/bioinformatics-resource-centers</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://ned.nih.gov/search/ViewDetails.aspx?NIHID=2001097136</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Georgia</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.uga.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Glasgow</r3d:institutionName>
<r3d:institutionCountry>GBR</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.gla.ac.uk/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.gla.ac.uk/connect/contact/</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Liverpool</r3d:institutionName>
<r3d:institutionCountry>GBR</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.liverpool.ac.uk/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.liverpool.ac.uk/contacts/</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Pennsylvania</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.upenn.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>droos@sas.upenn.edu</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">Wellcome Trust Sanger Institute</r3d:institutionName>
<r3d:institutionCountry>GBR</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.sanger.ac.uk/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>http://www.sanger.ac.uk/about/who-we-are/sanger-institute/contact-us</r3d:institutionContact>
</r3d:institution>
<r3d:policy>
<r3d:policyName>Data Access Policy</r3d:policyName>
<r3d:policyURL>http://microsporidiadb.org/micro//showXmlDataContent.do?name=XmlQuestions.About</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>NIAID Data Sharing and Release Guidelines</r3d:policyName>
<r3d:policyURL>https://www.niaid.nih.gov/research/data-sharing-and-release-guidelines</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:dataAccess>
<r3d:dataAccessType>embargoed</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
<r3d:dataLicenseURL>http://microsporidiadb.org/micro/showXmlDataContent.do?name=XmlQuestions.About</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:dataUploadLicense>
<r3d:dataUploadLicenseName>Data Submission</r3d:dataUploadLicenseName>
<r3d:dataUploadLicenseURL>http://microsporidiadb.org/EuPathDB_datasubm_SOP.pdf</r3d:dataUploadLicenseURL>
</r3d:dataUploadLicense>
<r3d:software>
<r3d:softwareName>CKAN</r3d:softwareName>
</r3d:software>
<r3d:versioning>yes</r3d:versioning>
<r3d:api apiType="REST">http://microsporidiadb.org/micro/serviceList.jsp</r3d:api>
<r3d:pidSystem>none</r3d:pidSystem>
<r3d:citationGuidelineURL>http://microsporidiadb.org/micro/showXmlDataContent.do?name=XmlQuestions.About#citingproviders</r3d:citationGuidelineURL>
<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
<r3d:qualityManagement>unknown</r3d:qualityManagement>
<r3d:metadataStandard>
<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
</r3d:metadataStandard>
<r3d:remarks></r3d:remarks>
<r3d:entryDate>2017-09-05</r3d:entryDate>
<r3d:lastUpdate>2018-12-17</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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