115 lines
9.2 KiB
XML
115 lines
9.2 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012214</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Mammalian Transcriptomic Database</r3d:repositoryName>
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<r3d:additionalName language="eng">MTD</r3d:additionalName>
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<r3d:repositoryURL>http://mtd.cbi.ac.cn/index.php</r3d:repositoryURL>
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<r3d:repositoryIdentifier>OMICS_11215</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>biodbcore-001412</r3d:repositoryIdentifier>
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<r3d:description language="eng">MTD is focused on mammalian transcriptomes with a current version that contains data from humans, mice, rats and pigs. Regarding the core features, the MTD browses genes based on their neighboring genomic coordinates or joint KEGG pathway and provides expression information on exons, transcripts, and genes by integrating them into a genome browser. We developed a novel nomenclature for each transcript that considers its genomic position and transcriptional features.</r3d:description>
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<r3d:repositoryContact>http://mtd.cbi.ac.cn/contact.php</r3d:repositoryContact>
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<r3d:repositoryContact>junyu@big.ac.cn</r3d:repositoryContact>
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<r3d:repositoryContact>xiaojingfa@big.ac.cn</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate></r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>http://bigd.big.ac.cn/mission</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>RNA</r3d:keyword>
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<r3d:keyword>RNA-seq</r3d:keyword>
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<r3d:keyword>Sequence Read Archive (SRA)</r3d:keyword>
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<r3d:keyword>cell lines</r3d:keyword>
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<r3d:keyword>gene expression</r3d:keyword>
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<r3d:keyword>genetics</r3d:keyword>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>human</r3d:keyword>
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<r3d:keyword>mouse</r3d:keyword>
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<r3d:keyword>pig</r3d:keyword>
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<r3d:keyword>rat</r3d:keyword>
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<r3d:keyword>tissues</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Chinese Academy of Sciences, Beijing Institute of Genomics, Big Data Center</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BIGD</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">CAS, BIGD</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="zho">中国科学院北京基因组研究所生命与健康大数据中心</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="zho">大数据中心</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CHN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://bigd.big.ac.cn/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://bigd.big.ac.cn/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Chinese Academy of Sciences, Beijing Institute of Genomics, CAS Key Laboratory of Genome Sciences & Information</r3d:institutionName>
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<r3d:institutionCountry>CHN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://sourcedb.big.cas.cn/yw/pl/fs/BIG_GSI/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>http://english.big.cas.cn/au/ct/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Natural Science Foundation of China</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NSFC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CHN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.nsfc.gov.cn/publish/portal1/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/3.0/cn/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://bigd.big.ac.cn/mission</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>unknown</r3d:softwareName>
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</r3d:software>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>http://mtd.cbi.ac.cn/faq.php#que7</r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:remarks>other link to MTD: http://bigd.big.ac.cn/mtd/index.php</r3d:remarks>
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<r3d:entryDate>2016-11-08</r3d:entryDate>
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<r3d:lastUpdate>2021-11-16</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |