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RegistriesOverlap/data/re3dataRecords/r3d100011906.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100011906</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">FungiDB</r3d:repositoryName>
<r3d:additionalName language="eng">The Fungal and Oomycete Genomics Resource</r3d:additionalName>
<r3d:repositoryURL>http://www.fungidb.org/fungidb/</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.xf30yc</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>OMICS_03103</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:SCR_006013</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nlx_151401</r3d:repositoryIdentifier>
<r3d:description language="eng">FungiDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for the kingdom Fungi. FungiDB was first released in early 2011 as a collaborative project between EuPathDB and the group of Jason Stajich (University of California, Riverside). At the end of 2015, FungiDB was integrated into the EuPathDB bioinformatic resource center. FungiDB integrates whole genome sequence and annotation and also includes experimental and environmental isolate sequence data. The database includes comparative genomics, analysis of gene expression, and supplemental bioinformatics analyses and a web interface for data-mining.</r3d:description>
<r3d:repositoryContact>http://fungidb.org/fungidb/app/contact-us</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated="2019-01-10">294 datasets</r3d:size>
<r3d:startDate>2011</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:missionStatementURL>http://www.fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.About</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:keyword>ChIP</r3d:keyword>
<r3d:keyword>ChIP - chip</r3d:keyword>
<r3d:keyword>DNA</r3d:keyword>
<r3d:keyword>FAIR</r3d:keyword>
<r3d:keyword>RNA</r3d:keyword>
<r3d:keyword>gene metrics</r3d:keyword>
<r3d:keyword>genome sequences</r3d:keyword>
<r3d:keyword>isolates</r3d:keyword>
<r3d:keyword>metabolic pathways</r3d:keyword>
<r3d:keyword>microarray</r3d:keyword>
<r3d:keyword>organisms</r3d:keyword>
<r3d:keyword>proteomics</r3d:keyword>
<r3d:keyword>quantitative proteomics</r3d:keyword>
<r3d:keyword>reagents</r3d:keyword>
<r3d:keyword>strains</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">Burroughs Wellcome Fund</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">BWF</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://bwfund.org/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://bwfund.org/contact</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Institutes of Health, National Institute of Allergy and Infectious Diseases, Bioinformatics Resource Centers</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">BRC</r3d:institutionAdditionalName>
<r3d:institutionAdditionalName language="eng">NIAID</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.niaid.nih.gov/research/bioinformatics-resource-centers</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.niaid.nih.gov/global/contact-us</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of California, Department of Microbiology and Plant Pathology</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://plantpathmicro.ucr.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>jason.stajich@ucr.edu</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Georgia</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.uga.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>http://andromeda.galib.uga.edu/contact/?Welcome&amp;Welcome</r3d:institutionContact>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of Pennsylvania</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.upenn.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://www.upenn.edu/about/comments</r3d:institutionContact>
</r3d:institution>
<r3d:policy>
<r3d:policyName>Data Access Policy</r3d:policyName>
<r3d:policyURL>http://www.fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.About</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>NIAID/Division of Microbiology and Infectious Diseases (DMID) Data Sharing and Release Guidelines</r3d:policyName>
<r3d:policyURL>https://www.niaid.nih.gov/research/data-sharing-and-release-guidelines</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:databaseLicense>
<r3d:databaseLicenseName>other</r3d:databaseLicenseName>
<r3d:databaseLicenseURL>http://www.opensource.org/licenses/</r3d:databaseLicenseURL>
</r3d:databaseLicense>
<r3d:dataAccess>
<r3d:dataAccessType>embargoed</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
<r3d:dataLicenseURL>http://www.fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.About</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataLicense>
<r3d:dataLicenseName>other</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://www.niaid.nih.gov/research/data-sharing-and-release-guidelines</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:dataUploadLicense>
<r3d:dataUploadLicenseName>Data Submission and Release on EuPathDB Databases</r3d:dataUploadLicenseName>
<r3d:dataUploadLicenseURL>http://fungidb.org/EuPathDB_datasubm_SOP.pdf</r3d:dataUploadLicenseURL>
</r3d:dataUploadLicense>
<r3d:software>
<r3d:softwareName>unknown</r3d:softwareName>
</r3d:software>
<r3d:versioning>yes</r3d:versioning>
<r3d:api apiType="REST">http://www.fungidb.org/fungidb/serviceList.jsp</r3d:api>
<r3d:pidSystem>none</r3d:pidSystem>
<r3d:citationGuidelineURL>http://www.fungidb.org/fungidb/showXmlDataContent.do?name=XmlQuestions.About#citing</r3d:citationGuidelineURL>
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
<r3d:qualityManagement>yes</r3d:qualityManagement>
<r3d:metadataStandard>
<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
</r3d:metadataStandard>
<r3d:syndication syndicationType="RSS">http://www.fungidb.org/releases.rss</r3d:syndication>
<r3d:syndication syndicationType="RSS">http://www.fungidb.org/news.rss</r3d:syndication>
<r3d:remarks>is covered by Elsevier. Fungi DB is a EuPathDB Project.
University of Pennsylvania is one of Bioinformatics Resource Centers awarded by NIAID to provide data, tools and services which can be accessed through publicly available sites.</r3d:remarks>
<r3d:entryDate>2015-12-22</r3d:entryDate>
<r3d:lastUpdate>2021-09-02</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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