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RegistriesOverlap/data/re3dataRecords/r3d100011104.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100011104</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">Worldwide Protein Data Bank</r3d:repositoryName>
<r3d:additionalName language="eng">PDB</r3d:additionalName>
<r3d:additionalName language="eng">wwPDB</r3d:additionalName>
<r3d:repositoryURL>http://www.wwpdb.org/</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.mckkb4</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:SCR_006555</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nif-0000-23903</r3d:repositoryIdentifier>
<r3d:description language="eng">The Protein Data Bank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules that serves a global community of researchers, educators, and students. The data contained in the archive include atomic coordinates, crystallographic structure factors and NMR experimental data. Aside from coordinates, each deposition also includes the names of molecules, primary and secondary structure information, sequence database references, where appropriate, and ligand and biological assembly information, details about data collection and structure solution, and bibliographic citations. The Worldwide Protein Data Bank (wwPDB) consists of organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). The wwPDB&#039;s mission is to maintain a single PDB archive of macromolecular structural data that is freely and publicly available to the global community.</r3d:description>
<r3d:repositoryContact>info@wwpdb.org</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:type>other</r3d:type>
<r3d:size updated="2018-11-30">PDB Depositions 152.043</r3d:size>
<r3d:startDate>2000</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">20104 Structural Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">20104 Structural Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
<r3d:subject subjectScheme="DFG">3 Natural Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">301 Molecular Chemistry</r3d:subject>
<r3d:subject subjectScheme="DFG">308 Optics, Quantum Optics and Physics of Atoms, Molecules and Plasmas</r3d:subject>
<r3d:subject subjectScheme="DFG">31 Chemistry</r3d:subject>
<r3d:subject subjectScheme="DFG">316 Geochemistry, Mineralogy and Crystallography</r3d:subject>
<r3d:subject subjectScheme="DFG">32 Physics</r3d:subject>
<r3d:subject subjectScheme="DFG">34 Geosciences (including Geography)</r3d:subject>
<r3d:missionStatementURL>http://www.wwpdb.org/</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:providerType>serviceProvider</r3d:providerType>
<r3d:keyword>biology</r3d:keyword>
<r3d:keyword>molecular biology</r3d:keyword>
<r3d:keyword>proteins</r3d:keyword>
<r3d:keyword>proteomics</r3d:keyword>
<r3d:keyword>x-ray structures</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">Biological Magnetic Resonance Data Bank</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">BMRB</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>http://www.bmrb.wisc.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">Protein Data Bank Japan</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">PDBj</r3d:institutionAdditionalName>
<r3d:institutionCountry>JPN</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://pdbj.org/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">Protein Data Bank in Europe</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">PDBe</r3d:institutionAdditionalName>
<r3d:institutionCountry>GBR</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>http://www.ebi.ac.uk/pdbe/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">RCSB Protein Data Bank</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">RCSB PDB</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.wwpdb.org/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">The Electron Microscopy Data Bank at PDBe</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">EMDB</r3d:institutionAdditionalName>
<r3d:institutionCountry>GBR</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>http://www.ebi.ac.uk/pdbe/emdb/</r3d:institutionURL>
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<r3d:policy>
<r3d:policyName>Core Trust Seal</r3d:policyName>
<r3d:policyURL>https://www.coretrustseal.org/wp-content/uploads/2021/05/worldwide-protein-data-bank_2021-05-07.pdf</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>Worldwide Protein Data Bank Policy Statement Governing Integrative/Hybrid Methods Structure Depositions</r3d:policyName>
<r3d:policyURL>http://www.wwpdb.org/documentation/ihm</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>wwPDB Agreement</r3d:policyName>
<r3d:policyURL>http://www.wwpdb.org/about/agreement</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>wwPDB Privacy and Usage Policies</r3d:policyName>
<r3d:policyURL>https://www.wwpdb.org/about/privacy</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
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<r3d:dataAccess>
<r3d:dataAccessType>embargoed</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
<r3d:dataLicenseURL>http://www.wwpdb.org/about/agreement</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:dataUploadLicense>
<r3d:dataUploadLicenseName>wwPDB new deposition and annotation system</r3d:dataUploadLicenseName>
<r3d:dataUploadLicenseURL>http://www.wwpdb.org/deposition/system-information</r3d:dataUploadLicenseURL>
</r3d:dataUploadLicense>
<r3d:software>
<r3d:softwareName>unknown</r3d:softwareName>
</r3d:software>
<r3d:versioning>yes</r3d:versioning>
<r3d:api apiType="FTP">http://www.wwpdb.org/download/downloads</r3d:api>
<r3d:api apiType="FTP">ftp://ftp.ebi.ac.uk/pub/databases/pdb/</r3d:api>
<r3d:api apiType="FTP">ftp://ftp.pdbj.org/pub/pdb/</r3d:api>
<r3d:api apiType="FTP">ftp://ftp.wwpdb.org/</r3d:api>
<r3d:api apiType="other">https://www.wwpdb.org/validation/onedep-validation-web-service-interface</r3d:api>
<r3d:pidSystem>none</r3d:pidSystem>
<r3d:citationGuidelineURL>http://www.wwpdb.org/about/cite-us</r3d:citationGuidelineURL>
<r3d:aidSystem>ORCID</r3d:aidSystem>
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
<r3d:qualityManagement>yes</r3d:qualityManagement>
<r3d:certificate>other</r3d:certificate>
<r3d:syndication syndicationType="RSS">http://www.wwpdb.org/news_rss.xml</r3d:syndication>
<r3d:remarks>is covered by Elsevier. Worldwide Protein Data Bank is covered by Thomson Reuters Data Citation Index.
wwPDB is a regular Member of the ICSU World Data System - WDS.</r3d:remarks>
<r3d:entryDate>2014-08-13</r3d:entryDate>
<r3d:lastUpdate>2021-09-03</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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