164 lines
14 KiB
XML
164 lines
14 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010931</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">The Human Protein Atlas</r3d:repositoryName>
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<r3d:additionalName language="eng">HPA</r3d:additionalName>
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<r3d:repositoryURL>https://www.proteinatlas.org/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.j0t0pe</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>MIR:00000336</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_03913</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_006710</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-00204</r3d:repositoryIdentifier>
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<r3d:description language="eng">The Swedish Human Protein Atlas project has been set up to allow for a systematic exploration of the human proteome using Antibody-Based Proteomics. This is accomplished by combining high-throughput generation of affinity-purified antibodies with protein profiling in a multitude of tissues and cells assembled in tissue microarrays. Confocal microscopy analysis using human cell lines is performed for more detailed protein localization. The program hosts the Human Protein Atlas portal with expression profiles of human proteins in tissues and cells. The main objective of the resource centre is to produce specific antibodies to human target proteins using a high-throughput production method involving the cloning and protein expression of Protein Epitope Signature Tags (PrESTs). After purification, the antibodies are used to study expression profiles in cells and tissues and for functional analysis of the corresponding proteins in a wide range of platforms.</r3d:description>
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<r3d:repositoryContact>contact@proteinatlas.org</r3d:repositoryContact>
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<r3d:repositoryContact>https://www.proteinatlas.org/about/contact</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2022-02-02">more than 26.900 antibodies targeting proteins from over 17.100 human genes;</r3d:size>
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<r3d:startDate>2005</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20104 Structural Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20104 Structural Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>https://www.proteinatlas.org/about</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>RNA</r3d:keyword>
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<r3d:keyword>antibody</r3d:keyword>
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<r3d:keyword>cancer</r3d:keyword>
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<r3d:keyword>cell biology</r3d:keyword>
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<r3d:keyword>cell lines</r3d:keyword>
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<r3d:keyword>histology</r3d:keyword>
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<r3d:keyword>human</r3d:keyword>
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<r3d:keyword>pathology</r3d:keyword>
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<r3d:keyword>proteomics</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">AlbaNova University Center</r3d:institutionName>
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<r3d:institutionAdditionalName language="swe">AlbaNova universitetscentrum</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">Stockholm Center for Physics, Astronomy and Biotechnology</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="swe">Stockholms centrum för fysik, astronomi och bioteknik</r3d:institutionAdditionalName>
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<r3d:institutionCountry>SWE</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.albanova.se/?q=an%2Fhem</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:044kkfr75</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>reception@albanova.se</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Knut & Alice Wallenberg Foundation</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">KAW</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="swe">Knut och Alice Wallenbergs Stiftelse</r3d:institutionAdditionalName>
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<r3d:institutionCountry>SWE</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://kaw.wallenberg.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:004hzzk67</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_004778</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_77359</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>kaw@kaw.se</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Royal Institute of Technology</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">KTH</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="swe">Kungliga Tekniska högskolan</r3d:institutionAdditionalName>
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<r3d:institutionCountry>SWE</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.kth.se/en</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:026vcq606</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_000992</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_48999</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.kth.se/en/om/kontakt</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">SciLifeLab</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">Science for Life Laboratory</r3d:institutionAdditionalName>
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<r3d:institutionCountry>SWE</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.scilifelab.se/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:04ev03g22</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_014078</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.scilifelab.se/contact/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Uppsala University, Rudbeck Laboratory</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">Rudbeck Laboratory</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="swe">Rudbecklaboratoriet</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="swe">Uppsala Universitet, Rudbecklaboratoriet</r3d:institutionAdditionalName>
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<r3d:institutionCountry>SWE</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.rudbeck.uu.se/?languageId=1</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>receptionen@rudbeck.uu.se</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Licence and citation policy</r3d:policyName>
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<r3d:policyURL>https://www.proteinatlas.org/about/licence</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>embargoed</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by-nc-nd/4.0/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://www.proteinatlas.org/about/licence</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:dataUploadLicense>
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<r3d:dataUploadLicenseName>Submission of external antibodies to be included in the Protein Atlas</r3d:dataUploadLicenseName>
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<r3d:dataUploadLicenseURL>https://www.proteinatlas.org/download/call.pdf</r3d:dataUploadLicenseURL>
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</r3d:dataUploadLicense>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://www.proteinatlas.org/about/licence</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks>Protein Atlas version 21.0 Release date: 2021.11.18
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The file structure is presented in the XSD-schema</r3d:remarks>
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<r3d:entryDate>2014-08-21</r3d:entryDate>
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<r3d:lastUpdate>2022-02-02</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |