103 lines
8.1 KiB
XML
103 lines
8.1 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
|
<r3d:repository>
|
|
<r3d:re3data.orgIdentifier>r3d100010653</r3d:re3data.orgIdentifier>
|
|
<r3d:repositoryName language="eng">Conserved Domain database</r3d:repositoryName>
|
|
<r3d:additionalName language="eng">CDD</r3d:additionalName>
|
|
<r3d:additionalName language="eng">formerly: Conserved Domains and Protein Classification</r3d:additionalName>
|
|
<r3d:repositoryURL>https://www.ncbi.nlm.nih.gov/cdd/</r3d:repositoryURL>
|
|
<r3d:repositoryIdentifier>RRID:SCR_002077</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:nif-0000-02647</r3d:repositoryIdentifier>
|
|
<r3d:description language="eng">The Conserved Domain Database is a resource for the annotation of functional units in proteins. Its collection of domain models includes a set curated by NCBI, which utilizes 3D structure to provide insights into sequence/structure/function relationships</r3d:description>
|
|
<r3d:repositoryContact>https://www.ncbi.nlm.nih.gov/home/about/contact/</r3d:repositoryContact>
|
|
<r3d:type>disciplinary</r3d:type>
|
|
<r3d:type>institutional</r3d:type>
|
|
<r3d:size updated="2022-08-17">62.852 total models; 4.617 multi-model Superfamilies</r3d:size>
|
|
<r3d:startDate>2008</r3d:startDate>
|
|
<r3d:endDate></r3d:endDate>
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
|
|
<r3d:missionStatementURL>https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml</r3d:missionStatementURL>
|
|
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
|
<r3d:providerType>serviceProvider</r3d:providerType>
|
|
<r3d:keyword>3-dimensional structures</r3d:keyword>
|
|
<r3d:keyword>PSSM</r3d:keyword>
|
|
<r3d:keyword>amino acids</r3d:keyword>
|
|
<r3d:keyword>biotechnology</r3d:keyword>
|
|
<r3d:keyword>nucleotide</r3d:keyword>
|
|
<r3d:keyword>protein</r3d:keyword>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">National Center for Biotechnology Information</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">NCBI</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:responsibilityType>technical</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.ncbi.nlm.nih.gov/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:02meqm098</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>https://www.ncbi.nlm.nih.gov/home/about/contact/</r3d:institutionContact>
|
|
<r3d:institutionContact>info@ncbi.nlm.nih.gov</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">National Institutes of Health, National Library of Medicine</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">NIH NLM</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>USA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.nlm.nih.gov/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:policy>
|
|
<r3d:policyName>NCBI Website and Data Usage Policies and Disclaimers</r3d:policyName>
|
|
<r3d:policyURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:policyURL>
|
|
</r3d:policy>
|
|
<r3d:databaseAccess>
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
|
</r3d:databaseAccess>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
|
</r3d:dataAccess>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>other</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataUpload>
|
|
<r3d:dataUploadType>closed</r3d:dataUploadType>
|
|
</r3d:dataUpload>
|
|
<r3d:software>
|
|
<r3d:softwareName>unknown</r3d:softwareName>
|
|
</r3d:software>
|
|
<r3d:versioning>yes</r3d:versioning>
|
|
<r3d:api apiType="FTP">ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/</r3d:api>
|
|
<r3d:api apiType="other">https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml#BatchRPSBWebAPI</r3d:api>
|
|
<r3d:pidSystem>none</r3d:pidSystem>
|
|
<r3d:citationGuidelineURL>https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd_help.shtml#CitingCDD</r3d:citationGuidelineURL>
|
|
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
|
|
<r3d:qualityManagement>yes</r3d:qualityManagement>
|
|
<r3d:remarks>the Conserved Domain Database is part of the NCBI Structure Group: Data ingest from following source databases: NCBI CDD, Simple Modular Architecture Research Tool (SMART), PFAM, COGs, Protein Clusters (PRK), TIGRFAMs</r3d:remarks>
|
|
<r3d:entryDate>2014-03-26</r3d:entryDate>
|
|
<r3d:lastUpdate>2022-08-17</r3d:lastUpdate>
|
|
</r3d:repository>
|
|
</r3d:re3data> |