122 lines
10 KiB
XML
122 lines
10 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010651</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">AceView</r3d:repositoryName>
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<r3d:additionalName language="eng">AceView genes</r3d:additionalName>
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<r3d:repositoryURL>https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.vwmc9h</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_002277</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-21007</r3d:repositoryIdentifier>
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<r3d:description language="eng">AceView provides a curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace). These experimental cDNA sequences are first co-aligned on the genome then clustered into a minimal number of alternative transcript variants and grouped into genes. Using exhaustively and with high quality standards the available cDNA sequences evidences the beauty and complexity of mammals’ transcriptome, and the relative simplicity of the nematode and plant transcriptomes. Genes are classified according to their inferred coding potential; many presumably non-coding genes are discovered. Genes are named by Entrez Gene names when available, else by AceView gene names, stable from release to release.
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Alternative features (promoters, introns and exons, polyadenylation signals) and coding potential, including motifs, domains, and homologies are annotated in depth; tissues where expression has been observed are listed in order of representation; diseases, phenotypes, pathways, functions, localization or interactions are annotated by mining selected sources, in particular PubMed, GAD and Entrez Gene, and also by performing manual annotation, especially in the worm.
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In this way, both the anatomy and physiology of the experimentally cDNA supported human, mouse and nematode genes are thoroughly annotated.</r3d:description>
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<r3d:repositoryContact>mieg@ncbi.nlm.nih.gov</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:type>institutional</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2000</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">202 Plant Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">20207 Plant Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20306 Animal Genetics, Cell and Developmental Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/index.html</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>ESTs</r3d:keyword>
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<r3d:keyword>arabidopsis</r3d:keyword>
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<r3d:keyword>cDNA</r3d:keyword>
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<r3d:keyword>clones</r3d:keyword>
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<r3d:keyword>disease</r3d:keyword>
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<r3d:keyword>human</r3d:keyword>
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<r3d:keyword>mRNA</r3d:keyword>
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<r3d:keyword>mouse</r3d:keyword>
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<r3d:keyword>rat</r3d:keyword>
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<r3d:keyword>structure</r3d:keyword>
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<r3d:keyword>transcripts</r3d:keyword>
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<r3d:keyword>worm</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Library of Medicine</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NIH NLM</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.nlm.nih.gov/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">National Institutes of Health, National Library of Medicine , National Center for Biotechnology Information</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">NCBI</r3d:institutionAdditionalName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionIdentifier>ROR:02meqm098</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>mieg@ncbi.nlm.nih.gov</r3d:institutionContact>
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<r3d:institutionContact>potdevin.michel@wanadoo.fr</r3d:institutionContact>
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<r3d:institutionContact>y.mieg@free.fr</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Conditions of use</r3d:policyName>
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<r3d:policyURL>https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/Download/Downloads.html</r3d:policyURL>
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</r3d:policy>
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<r3d:policy>
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<r3d:policyName>U.S. Copyright Office Fair Use Index</r3d:policyName>
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<r3d:policyURL>https://www.copyright.gov/fair-use/</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://www.ncbi.nlm.nih.gov/home/about/policies/</r3d:dataLicenseURL>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
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<r3d:software>
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<r3d:softwareName>other</r3d:softwareName>
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<r3d:versioning>yes</r3d:versioning>
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<r3d:api apiType="FTP">ftp://ftp.ncbi.nlm.nih.gov/repository/acedb</r3d:api>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://www.ncbi.nlm.nih.gov/ieb/research/acembly/AboutAceView.html#quote</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks>https://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/downloads.html</r3d:remarks>
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<r3d:entryDate>2014-03-26</r3d:entryDate>
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<r3d:lastUpdate>2022-12-12</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |