119 lines
9.2 KiB
XML
119 lines
9.2 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100010619</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">cisRED</r3d:repositoryName>
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<r3d:additionalName language="eng">Databases of genome-wide regulatory module and element predictions</r3d:additionalName>
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<r3d:additionalName language="eng">cis - Regulatory element database</r3d:additionalName>
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<r3d:repositoryURL>http://www.cisred.org/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.rwd4wq</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>OMICS_01857</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:SCR_002098</r3d:repositoryIdentifier>
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<r3d:repositoryIdentifier>RRID:nif-0000-02665</r3d:repositoryIdentifier>
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<r3d:description language="eng">The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, similarity, clustering, co-occurrence and coexpression calculations. Sequence inputs include low-coverage genome sequence data and ENCODE data. A Nucleic Acids Research article describes the system architecture</r3d:description>
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<r3d:repositoryContact>cisred@bcgsc.ca</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2007</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>C. Elegans</r3d:keyword>
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<r3d:keyword>DNA</r3d:keyword>
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<r3d:keyword>SAGE</r3d:keyword>
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<r3d:keyword>human</r3d:keyword>
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<r3d:keyword>mouse</r3d:keyword>
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<r3d:keyword>rat</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">BC Cancer Agency, Research Centre, Canada's Michael Smith Genome Sciences Centre</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BCGSC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>http://www.bcgsc.ca/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>cisred@bcgsc.ca</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">BC Cancer Foundation</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://bccancerfoundation.com/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://bccancerfoundation.com/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Genome Canada</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.genomecanada.ca/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.genomecanada.ca/en/about-us/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Michael Smith Foundation for Health Research</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">MSFHR</r3d:institutionAdditionalName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.msfhr.org/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.msfhr.org/contact</r3d:institutionContact>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>Data Release Policy: Open Access</r3d:policyName>
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<r3d:policyURL>http://www.bcgsc.ca/data/data-release-open-access</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>CC</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/2.5/</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://www.bcgsc.ca/data/data-release-open-access</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>closed</r3d:dataUploadType>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>MySQL</r3d:softwareName>
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</r3d:software>
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<r3d:versioning></r3d:versioning>
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<r3d:pidSystem>none</r3d:pidSystem>
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<r3d:citationGuidelineURL>https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1347438/citedby/</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:remarks></r3d:remarks>
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<r3d:entryDate>2014-02-20</r3d:entryDate>
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<r3d:lastUpdate>2019-01-17</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |