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RegistriesOverlap/data/re3dataRecords/r3d100010243.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100010243</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">UCSC Genome Browser</r3d:repositoryName>
<r3d:additionalName language="eng">UCSC Genome Bioinformatics</r3d:additionalName>
<r3d:additionalName language="eng">University of California Santa Cruz Genome Bioinformatics</r3d:additionalName>
<r3d:repositoryURL>https://genome.ucsc.edu/</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.s22qdj</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>OMICS_00926</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:SCR_005780</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nif-0000-03603</r3d:repositoryIdentifier>
<r3d:description language="eng">It is an interactive website offering access to genome sequence data from a variety of vertebrate and invertebrate species and major model organisms, integrated with a large collection of aligned annotations. The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels.</r3d:description>
<r3d:repositoryContact>genome@soe.ucsc.edu</r3d:repositoryContact>
<r3d:repositoryContact>https://genome.ucsc.edu/contacts.html</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated=""></r3d:size>
<r3d:startDate>2009</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
<r3d:subject subjectScheme="DFG">20306 Animal Genetics, Cell and Developmental Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
<r3d:subject subjectScheme="DFG">20401 Metabolism, Biochemistry and Genetics of Microorganisms</r3d:subject>
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
<r3d:missionStatementURL>http://genomewiki.ucsc.edu/index.php/Main_Page</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Databases</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:keyword>COVID-19</r3d:keyword>
<r3d:keyword>bioinformatics</r3d:keyword>
<r3d:keyword>chromosomes</r3d:keyword>
<r3d:keyword>comparative genomics</r3d:keyword>
<r3d:keyword>genes</r3d:keyword>
<r3d:keyword>genome analysis</r3d:keyword>
<r3d:keyword>genome browser</r3d:keyword>
<r3d:keyword>genomes</r3d:keyword>
<r3d:keyword>sequence</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">Howard Hughes Medical Institute</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">HHMI</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.hhmi.org/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:006w34k90</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Cancer Institute</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NCI</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.cancer.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:040gcmg81</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Human Genome Research Institute</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NHGRI</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.genome.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:00baak391</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of California Santa Cruz, Genomics Institute</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">UCSC, CBSE</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://ucscgenomics.soe.ucsc.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://ucscgenomics.soe.ucsc.edu/contact/</r3d:institutionContact>
</r3d:institution>
<r3d:policy>
<r3d:policyName>Browser Genome Release Agreement</r3d:policyName>
<r3d:policyURL>https://www.ncbi.nlm.nih.gov/projects/mapview/static/app_help/Browser_Genome_Release_Agreement.html</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>restricted</r3d:dataAccessType>
<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://genome.ucsc.edu/conditions.html</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataLicense>
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://genome.ucsc.edu/license/</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataLicense>
<r3d:dataLicenseName>other</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://genome.ucsc.edu/license/gblicense.pdf</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:software>
<r3d:softwareName>unknown</r3d:softwareName>
</r3d:software>
<r3d:versioning></r3d:versioning>
<r3d:api apiType="FTP">ftp://hgdownload.cse.ucsc.edu/</r3d:api>
<r3d:pidSystem>none</r3d:pidSystem>
<r3d:citationGuidelineURL>https://genome.ucsc.edu/cite.html</r3d:citationGuidelineURL>
<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
<r3d:qualityManagement>yes</r3d:qualityManagement>
<r3d:remarks>A license is required for commercial download and/or installation of the Genome Browser binaries and source code.
Downloading data: https://www.genome.ucsc.edu/goldenPath/help/ftp.html
UCSC Genome Browser Mirror Sites see: https://genome.ucsc.edu/mirror.html
Europe: https://genome-euro.ucsc.edu/
Asia: https://genome-asia.ucsc.edu/
Simons Center for Quantitative Biology at Cold Spring Harbor Laboratory : http://genome-mirror.cshl.edu/ This mirror may contain CSHL-generated annotations in addition to the standard UCSC tracks</r3d:remarks>
<r3d:entryDate>2013-04-17</r3d:entryDate>
<r3d:lastUpdate>2021-08-24</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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