93 lines
7.5 KiB
XML
93 lines
7.5 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100013971</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">CIS-BP</r3d:repositoryName>
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<r3d:additionalName language="eng">Catalog of Inferred Sequence Binding Preferences</r3d:additionalName>
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<r3d:repositoryURL>http://cisbp.ccbr.utoronto.ca/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>RRID:SCR_017236</r3d:repositoryIdentifier>
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<r3d:description language="eng">The Catalog of Inferred Sequence Binding Preferences (CIS-BP) is a library of transcription factor (TF) DNA binding motifs and specificities. The data are organized in a user friendly manner for ease of searching, browsing, and downloading. CIS-BP also includes built-in web tools for scanning DNA sequences for putative TF binding sites, predicting the DNA binding motif of a given TF, and identifying a TF that might recognize a given DNA motif.</r3d:description>
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<r3d:repositoryContact>http://cisbp.ccbr.utoronto.ca/contact.php</r3d:repositoryContact>
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<r3d:repositoryContact>matthew.weirauch@cchmc.org</r3d:repositoryContact>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2022-09-13">1.491 motifs; 165.030 TFs with at least one binding motif (4.559 from direct experiments), out of a total of 392.333 TFs from 321 families in 741 species</r3d:size>
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<r3d:startDate></r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20306 Animal Genetics, Cell and Developmental Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:missionStatementURL>http://cisbp.ccbr.utoronto.ca/help.html</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Structured text</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>DNA</r3d:keyword>
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<r3d:keyword>FactorBook</r3d:keyword>
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<r3d:keyword>Fly Factor Survey</r3d:keyword>
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<r3d:keyword>HOCOMOCO</r3d:keyword>
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<r3d:keyword>JASPAR</r3d:keyword>
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<r3d:keyword>Transfac</r3d:keyword>
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<r3d:keyword>UniProbe</r3d:keyword>
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<r3d:keyword>eukaryotic proteomes</r3d:keyword>
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<r3d:keyword>motif</r3d:keyword>
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<r3d:keyword>protein binding microarray (PBM)</r3d:keyword>
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<r3d:keyword>transcription factor (TF)</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Cincinnati Children’s Hospital Medical Center</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.cincinnatichildrens.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:01hcyya48</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">University of Toronto</r3d:institutionName>
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<r3d:institutionCountry>CAN</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.utoronto.ca/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:03dbr7087</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://governingcouncil.utoronto.ca/secretariat/policies</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://cisbp.ccbr.utoronto.ca/faq.html</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:versioning></r3d:versioning>
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<r3d:citationGuidelineURL>http://cisbp.ccbr.utoronto.ca/cite.php</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>unknown</r3d:qualityManagement>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">DDI - Data Documentation Initiative</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/ddi-data-documentation-initiative</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:metadataStandard>
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<r3d:metadataStandardName metadataStandardScheme="DCC">Dublin Core</r3d:metadataStandardName>
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<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/dublin-core</r3d:metadataStandardURL>
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</r3d:metadataStandard>
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<r3d:remarks>Note: many motifs derived from Transfac require a license – hence, we do not provide these motifs, and instead indicate that a “Transfac license is required.”</r3d:remarks>
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<r3d:entryDate>2022-09-13</r3d:entryDate>
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<r3d:lastUpdate>2022-09-16</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |