miriam.baglioni
/
RegistriesOverlap
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
RegistriesOverlap/data/re3dataRecords/r3d100012901.xml

86 lines
7.3 KiB
XML
Raw Blame History

<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100012901</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">Antimicrobial Peptide Database</r3d:repositoryName>
<r3d:additionalName language="eng">APD</r3d:additionalName>
<r3d:repositoryURL>http://aps.unmc.edu/AP/main.php</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.ctwd7b</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>OMICS_05706</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:SCR_006606</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nif-0000-02553</r3d:repositoryIdentifier>
<r3d:description language="eng">The Antimicrobial Peptide Database (APD) was originally created by a graduate student, Zhe Wang, as his master&#039;s thesis in the laboratory of Dr. Guangshun Wang. The project was initiated in 2002 and the first version of the database was open to the public in August 2003. It contained 525 peptide entries, which can be searched in multiple ways, including APD ID, peptide name, amino acid sequence, original location, PDB ID, structure, methods for structural determination, peptide length, charge, hydrophobic content, antibacterial, antifungal, antiviral, anticancer, and hemolytic activity. Some results of this bioinformatics tool were reported in the 2004 database paper. The peptide data stored in the APD were gleaned from the literature (PubMed, PDB, Google, and Swiss-Prot) manually in over a decade.</r3d:description>
<r3d:repositoryContact>gwang@unmc.edu</r3d:repositoryContact>
<r3d:repositoryContact>http://aps.unmc.edu/AP/contact.php</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated="2019-02-26">APD contains 3.058 antimicrobial peptides from six kingdoms (337 bacteriocins/peptide antibiotics from bacteria,5 from archaea, 8 from protists, 18 from fungi, 346 from plants, and 2.264 from animals, including some synthetic peptides)</r3d:size>
<r3d:startDate>2003</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
<r3d:subject subjectScheme="DFG">20403 Medical Microbiology, Molecular Infection Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">20405 Immunology</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
<r3d:missionStatementURL>http://aps.unmc.edu/AP/about.php</r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:providerType>serviceProvider</r3d:providerType>
<r3d:keyword>animal</r3d:keyword>
<r3d:keyword>bacteria</r3d:keyword>
<r3d:keyword>fungus</r3d:keyword>
<r3d:keyword>host defense peptides</r3d:keyword>
<r3d:keyword>immune system</r3d:keyword>
<r3d:keyword>plant</r3d:keyword>
<r3d:keyword>protozoa</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">University of Nebraska Medical Center, Department of Pathology and Microbiology</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">UNMC, Department of Pathology and Microbiology</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:responsibilityType>technical</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.unmc.edu/pathology/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>http://aps.unmc.edu/AP/contact.php</r3d:institutionContact>
</r3d:institution>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:databaseLicense>
<r3d:databaseLicenseName>Copyrights</r3d:databaseLicenseName>
<r3d:databaseLicenseURL>http://aps.unmc.edu/AP/about.php</r3d:databaseLicenseURL>
</r3d:databaseLicense>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
<r3d:dataLicenseURL>http://aps.unmc.edu/AP/about.php</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>restricted</r3d:dataUploadType>
<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
</r3d:dataUpload>
<r3d:software>
<r3d:softwareName>unknown</r3d:softwareName>
</r3d:software>
<r3d:versioning>yes</r3d:versioning>
<r3d:pidSystem>other</r3d:pidSystem>
<r3d:citationGuidelineURL>http://aps.unmc.edu/AP/FAQ.php</r3d:citationGuidelineURL>
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
<r3d:qualityManagement>unknown</r3d:qualityManagement>
<r3d:metadataStandard>
<r3d:metadataStandardName metadataStandardScheme="DCC">Repository-Developed Metadata Schemas</r3d:metadataStandardName>
<r3d:metadataStandardURL>http://www.dcc.ac.uk/resources/metadata-standards/repository-developed-metadata-schemas</r3d:metadataStandardURL>
</r3d:metadataStandard>
<r3d:remarks></r3d:remarks>
<r3d:entryDate>2018-11-16</r3d:entryDate>
<r3d:lastUpdate>2019-02-26</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
Reference in New Issue View Git Blame Copy Permalink